Publications by: Marine & Aquaculture Sciences

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Walker, S.E., Sheaves, M., and Waltham, N.J. (2022) Barriers to Using UAVs in Conservation and Environmental Management: A Systematic Review. Environmental Management. (In Press)

Saleh, Alzayat, Sheaves, Marcus, and Rahimi Azghadi, Mostafa (2022) Computer vision and deep learning for fish classification in underwater habitats: A survey. Fish and Fisheries. (In Press)

Li, Jie, Zou, Yiyang, Yang, Jian, Li, Qiqi, Bourne, David G., Sweet, Michael, Liu, Cong, Guo, Anjie, and Zhang, Si (2022) Cultured Bacteria Provide Insight into the Functional Potential of the Coral-Associated Microbiome. mSystems. (In Press)

Fernando, Fernando, Candebat, Caroline L., Strugnell, Jan M., Andreakis, Nikolaos, and Nankervis, Leo (2022) Dietary supplementation of astaxanthin modulates skin color and liver antioxidant status of giant grouper (Epinephelus lanceolatus). Aquaculture Reports, 26. 101266. (In Press)

Hobbs, Jean-Paul A., Richards, Zoe T., Popovic, Iva, Lei, Chuan, Staeudle, Timo M., Montanari, Stefano R., and Dibattista, Joseph D. (2022) Hybridisation and the evolution of coral reef biodiversity. Coral Reefs. (In Press)

Greco, Laura Susana Lopez, Stumpf, Liane, Timpanaro, Santiago, Cid, Abril Rebagliati, Lamberti, Matias, Battista, Ariadna, LauraTomas, Ana, and Jones, Clive M. (2022) Impact of low-cost diets on maturation of the red claw crayfish Cherax quadricarinatus: An integrative approach during a long-term study. Aquaculture, 561. 738614. (In Press)

Grant, Michael I., Bicknell, Anthony W.J., Htut, Thaung, Maung, Antt, Maung, Thu, Myo, Khin Myo, Rein, Thu, San, Min Khan, White, William T., Ya, Kyaw Zay, and Mizrahi, Meira (2022) Market surveys and social media provide confirmation of the endangered giant freshwater whipray Urogymnus polylepis in Myanmar. Journal of Fish Biology. (In Press)

Cooper, Madalyn K., Villacorta-Rath, Cecilia, Burrows, Damien, Jerry, Dean R., Carr, Leah, Barnett, Adam, Huveneers, Charlie, and Simpfendorfer, Colin A. (2022) Practical eDNA sampling methods inferred from particle size distribution and comparison of capture techniques for a Critically Endangered elasmobranch. Environmental DNA. (In Press)

Mohammadi, Zohre, Bhati, Abhishek Singh, and Jerry, Dean (2022) A Pre-Science Style Model of Aquaculture Tourism Businesses. Tourism Planning & Development. (In Press)

Welch, David J., Smith, Adam K., Krusic-Golub, Kyne, Erdmann, Sandra, and Newman, Stephen J. (2022) Preliminary age-based life history characteristics of the dogtooth tuna, Gymnosarda unicolor (Ruppell, 1838), in the southwest Pacific Ocean. Aquaculture and Fisheries. (In Press)

Nankervis, Leo, and Jones, Clive (2022) Recent advances and future directions in practical diet formulation and adoption in tropical Palinurid lobster aquaculture. Reviews in Aquaculture. (In Press)

Smith, Hillary A., Brown, Dylan A., Arjunwadkar, Chaitanya V., Fulton, Stella E., Whitman, Taylor, Hermanto, Bambang, Mastroianni, Elissa, Mattocks, Neil, Smith, Adam K., Harrison, Peter L., Boström-Einarsson, Lisa, McLeod, Ian M., and Bourne, David G. (2022) Removal of macroalgae from degraded reefs enhances coral recruitment. Restoration Ecology. (In Press)

Barnett, Adam, Fitzpatrick, Richard, Bradley, Michael, Miller, Ingo, Sheaves, Marcus, Chin, Andrew, Smith, Bethany, Diedrich, Amy, Yick, Jonah, Lubitz, Nicolas, Crook, Kevin, Mattone, Carlo, Bennett, Mike B., Wojtach, Leah, and Abrantes, Katya (2022) Scientific response to a cluster of shark bites. People and Nature. (In Press)

Borland, Hayden P., Gilby, Ben L., Henderson, Christopher J., Connolly, Rod M., Gorissen, Bob, Ortodossi, Nicholas L., Rummell, Ashley L., Nagelkerken, Ivan, Pittman, Simon J., Sheaves, Marcus, and Olds, Andrew D. (2022) Seafloor Terrain Shapes the Three-dimensional Nursery Value of Mangrove and Seagrass Habitats. Ecosystems. (In Press)

Clark-Shen, Naomi, Chin, Andrew, Arunrugstichai, Sirachai, Labaja, Jessica, Mizrahi, Meira, Simeon, Benaya, and Hutchinson, Neil (2022) Status of Southeast Asia's marine sharks and rays. Conservation Biology. (In Press)

Cardenosa, Diego, Shea, Stanley K., Zhang, Huarong, Fischer, Gunter A., Simpfendorfer, Colin A., and Chapman, Demian D. (2022) Two thirds of species in a global shark fin trade hub are threatened with extinction: Conservation potential of international trade regulations for coastal sharks. Conservation Letters. e12910. (In Press)

Massault, Cecile, Jeffrey, Cara, Jones, David B., Barnard, Roger, Strugnell, Jan M., Zenger, Kyall R., and Jerry, Dean R. (2022) Non-invasive DNA collection for parentage analysis for bivalves: A case study from the silver-lipped pearl oyster (Pinctada maxima). Aquaculture, 552. 738036.

Nankervis, Leo, Cobcroft, Jennifer M., Nguyen, Nguyen V., and Rimmer, Michael A. (2022) Advances in practical feed formulation and adoption for hybrid grouper (Epinephelus fuscoguttatus ♀ × E. lanceolatus ♂) aquaculture. Reviews in Aquaculture, 14 (1). pp. 288-307.

Kumanan, Karthiga, von Ammon, Ulla, Fidler, Andrew, Symonds, Jane E., Walker, Seumas P., Carson, Jeremy, and Hutson, Kate S. (2022) Advantages of selective medium for surveillance of Tenacibaculum species in marine fish aquaculture. Aquaculture, 558. 738365.

Hemingson, Christopher R., Mihalitsis, Michalis, and Bellwood, David R. (2022) Are fish communities on coral reefs becoming less colourful? Global Change Biology, 28 (10). pp. 3321-3332.

Corkeron, Peter, Roman, Joe, Kershaw, Francine, Leslie, Matthew S., Kraus, Scott D., and Sutaria, Dipani (2022) Balaenoptera ricei is also the Gulf of Mexico whale. Marine Mammal Science, 38 (2). pp. 847-849.

Pearson, Richard G., Davis, Aaron M., and Birtles, R.Alastair (2022) The Burdekin River: a review of its ecology, conservation and management. Report. James Cook University, Townsville, Queensland.

Narvaez, Pauline, Morais, Renato A., Vaughan, David B., Grutter, Alexandra S., and Hutson, Kate S. (2022) Cleaner fish are potential super-spreaders. Journal of Experimental Biology, 225. 15.

Galbraith, Gemma F., Cresswell, Benjamin J., McCormick, Mark, Bridge, Thomas C., and Jones, Geoffrey P. (2022) Contrasting hydrodynamic regimes of submerged pinnacle and emergent coral reefs. PLoS ONE, 17 (8). e0273092.

Razak, Tries B., Bostrom-Einarsson, Lisa, Alisa, Cut Aja Gita, Vida, Rindah Talitha, and Lamont, Timothy A.C. (2022) Coral reef restoration in Indonesia: A review of policies and projects. Marine Policy, 137. 104940.

Kuek, Felicity, Motti, Cherie, Zhang, Jia, Cooke, Ira R., Todd, Jonathan D., Miller, David J., Bourne, David G., and Raina, Jean-Baptiste (2022) DMSP production by coral-associated bacteria. Frontiers in Marine Science, 9. 869574.

Budd, Alyssa M., Guppy, Jarrod L., Thepot, Valentin, Domingos, Jose A., and Jerry, Dean R. (2022) Delayed effect of low rearing temperature on gonadal DNA methylation in juvenile barramundi (Lates calcarifer). Aquaculture, 560. 738541.

Hill, Erin, Linacre, Adrian, Toop, Simon, Murphy, Nicholas, and Strugnell, Jan M. (2022) Development of an STR panel for a non-native population of an endangered species. Molecular Biology Reports, 49 (1). pp. 839-845.

Baje, Leontine, Chin, Andrew, White, William T., and Simpfendorfer, Colin A. (2022) Dietary overlap of carcharhinid sharks in the Gulf of Papua. Marine and Freshwater Research, 73 (5). pp. 605-614.

Foster, Charles S.P., Van Dyke, James U., Thompson, Michael B., Smith, Nicholas M.A., Simpfendorfer, Colin A., Murphy, Christopher R., and Whittington, Camilla M. (2022) Different Genes are Recruited During Convergent Evolution of Pregnancy and the Placenta. Molecular Biology and Evolution, 39 (4). msac077.

Li, Joan Y.Q., Nankervis, Leo, and Dawson, Amanda L. (2022) Digesting the Indigestible: Microplastic Extraction from Prawn Digestive Tracts. Frontiers in Environmental Chemistry, 3. 903314.

Bourne, David G, Smith, Hillary, and Page, Cathie (2022) Diseases of scleractinian corals. In: Rowley, Andrew F., Coates, Christopher J., and Whitten, Miranda W., (eds.) Invertebrate Pathology. Oxford University Press, Oxford, UK, pp. 77-108.

Villacorta Rath, Cecilia, Green, Bridget S., Gardner, Caleb, Murphy, Nick P., Souza, Carla A., and Strugnell, Jan M. (2022) Disentangling genetic from environmental effects on phenotypic variability of Southern rock lobster (Jasus edwardsii) postlarvae. Ecology and Evolution, 12 (11). e9519.

Borland, Hayden P., Gilby, Ben L., Henderson, Christopher J., Connolly, Rod M., Gorissen, Bob, Ortodossi, Nicholas L., Rummell, Ashley J., Pittman, Simon J., Sheaves, Marcus, and Olds, Andrew D. (2022) Dredging fundamentally reshapes the ecological significance of 3D terrain features for fish in estuarine seascapes. Landscape Ecology, 37. pp. 1385-1400.

Borland, Hayden P., Gilby, Ben L., Henderson, Christopher J., Connolly, Rod M., Gorissen, Bob, Ortodossi, Nicholas L., Rummell, Ashley J., Pittman, Simon J., Sheaves, Marcus, and Olds, Andrew D. (2022) Dredging transforms the seafloor and enhances functional diversity in urban seascapes. Science of the Total Environment, 831. 154811.

Noonan, Sam H.C., DiPerna, Stephanie, Hoogenboom, Mia O., and Fabricius, Katharina E. (2022) Effects of variable daily light integrals and elevated CO2 on the adult and juvenile performance of two Acropora corals. Marine Biology, 169. 10.

von Ammon, Ulla, Averink, Tessa, Kumanan, Karthiga, Brosnahan, Cara L., Pochon, Xavier, Hutson, Kate S., and Symonds, Jane E. (2022) An Efficient Tetraplex Surveillance Tool for Salmonid Pathogens. Frontiers In Microbiology, 13. 885585.

Cooke, Steven J., Hultine, Kevin R., Rummer, Jodie L., Fangue, Nann A., Seebacher, Frank, Eliason, Erika J., Macmillan, Heath A., Fuller, Andrea, and Franklin, Craig E. (2022) Elevating the impact of conservation physiology by building a community devoted to excellence, transparency, ethics, integrity and mutual respect. Conservation Physiology, 10 (1). coac015.

Shu, Jacelyn J., Heuer, Rachael M., Hannan, Kelly D., Stieglitz, John D., Benetti, Daniel D., Rummer, Jodie L., Grosell, Martin, and Brauner, Colin J. (2022) Enhanced oxygen unloading in two marine percomorph teleosts. Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 264. 111101.

Mattone, Carlo, Bradley, Michael, Barnett, Adam, Konovalov, Dmitry A., and Sheaves, Marcus (2022) Environmental conditions constrain nursery habitat value in Australian sub-tropical estuaries. Marine Environmental Research, 175. 105568.

Budd, Alyssa M., Robins, Julie B., Whybird, Olivia, and Jerry, Dean R. (2022) Epigenetics underpins phenotypic plasticity of protandrous sex change in fish. Ecology and Evolution, 12 (3). e8730.

Xu, Tian, and Zeng, Chaoshu (2022) Establishing larval feeding regimens for the decorator crab Camposcia retusa: effects of live prey types and density on larval survival and development. Aquaculture Research, 53 (7). pp. 2772-2784.

Zhang, Jia, Richards, Zoe T., Adam, Arne A.S., Chan, Cheong Xin, Shinzato, Chuya, Gilmour, James, Thomas, Luke, Strugnell, Jan M., Miller, David J., and Cooke, Ira (2022) Evolutionary Responses of a Reef-building Coral to Climate Change at the End of the Last Glacial Maximum. Molecular Biology and Evolution, 39 (10). msac201.

Free, Christopher M., Cabral, Reniel B., Froehlich, Halley E., Battista, Willow, Ojea, Elena, O’Reilly, Erin, Palardy, James E., García Molinos, Jorge, Siegel, Katherine J., Arnason, Ragnar, Juinio-Meñez, Marie Antonette, Fabricius, Katharina, Turley, Carol, and Gaines, Steven D. (2022) Expanding ocean food production under climate change. Nature, 605. pp. 490-496.

Westaway, Jacob A.F., Huerlimann, Roger, Kandasamy, Yogavijayan, Miller, Catherine M., Norton, Robert, Watson, David, Infante-Villamil, Sandra, and Rudd, Donna (2022) Exploring the long-term colonisation and persistence of probiotic-prophylaxis species on the gut microbiome of preterm infants: a pilot study. European Journal of Pediatrics, 181 (9). pp. 3389-3400.

Siqueira Correa, Alexandre, Kiessling, Wolfgang, and Bellwood, David (2022) Fast-growing species shape the evolution of reef corals. Nature Communications, 13. 2426.

Muruga, Pooventhran, Bellwood, David R., and Mihalitsis, Michalis (2022) Forensic odontology: Assessing bite wounds to determine the role of teeth in piscivorous fishes. Integrative Organismal Biology, 4 (1). obac011.

Nankervis, L., Barbero, G., Irving, A., Joyce, M., Pizzutto, M., Diedrich, A., and Condon, K. (2022) Future-proofing the NA aquaculture industry need for skilled staff to 2050. Report. CRC for Developing Northern Australia, Townsville.

Kosch, Tiffany A., Waddle, Anthony W., Cooper, Caitlin A., Zenger, Kyall R., Garrick, Dorian J., Berger, Lee, and Skerratt, Lee F. (2022) Genetic approaches for increasing fitness in endangered species. Trends in Ecology & Evolution, 37 (4). pp. 332-345.

Huerlimann, Roger, Cowley, Jeff A., Wade, Nicholas M., Wang, Yinan, Kasinadhuni, Naga, Chan, Chon Kit Kenneth, Jabbari, Jafar S., Siemering, Kirby, Gordon, Lavinia, Tinning, Matthew, Montenegro, Juan D., Maes, Gregory E., Sellars, Melony J., Coman, Gregory J., McWilliam, Sean, Zenger, Kyall R., Khatkar, Mehar S., Raadsma, Herman W., Donovan, Dallas, Krishna, Gopala, and Jerry, Dean R. (2022) Genome assembly of the Australian black tiger shrimp (Penaeus monodon) reveals a novel fragmented IHHNV EVE sequence. G3: Genes, Genomes, Genetics, 12 (4). jkac034.

Omeka, W.K.M., Liyanage, D.S., Lee, Sukkyoung, Lim, Chaehyeon, Yang, Hyerim, Sandamalika, W.M.Gayashani, Udayantha, H.M.V., Kim, Gaeun, Ganeshalingam, Subothini, Jeong, Taehyug, Oh, Seong-Rip, Won, Seung-Hwan, Koh, Hyoung-Bum, Kim, Mun-Kwan, Jones, David B., Massault, Cecile, Jerry, Dean R., and Lee, Jehee (2022) Genome-wide association study (GWAS) of growth traits in olive flounder (Paralichthys olivaceus). Aquaculture, 555. 738257.

Liyanage, D.S., Lee, Sukkyoung, Yang, Hyerim, Lim, Chaehyeon, Omeka, W.K.M., Sandamalika, W.M. Gayashani, Udayantha, H.M.V., Kim, Gaeun, Ganeshalingam, Subothini, Jeong, Taehyug, Oh, Seong-Rip, Won, Seung-Hwan, Koh, Hyoung-Bum, Kim, Mun-Kwan, Jones, David B., Massault, Cecile, Jerry, Dean R., and Lee, Jehee (2022) Genome-wide association study of VHSV-resistance trait in Paralichthys olivaceus. Fish and Shellfish Immunology, 124. pp. 391-400.

Womersley, Freya C., Humphries, Nicolas E., Queiroz, Nuno, Vedor, Marisa, da Costa, Ivo, Furtado, Miguel, Tyminski, John P., Abrantes, Katya, Araujo, Gonzalo, Bach, Steffen S., Barnett, Adam, Berumen, Michael L., Bessudo Lion, Sandra, Braun, Camrin D., Clingham, Elizabeth, Cochran, Jesse E.M., de la Parra, Rafael, Diamant, Stella, Dove, Alistair D.M., Dudgeon, Christine L., Erdmann, Mark V., Espinoza, Eduardo, Fitzpatrick, Richard, Cano, Jaime González, Green, Jonathan R., Guzman, Hector M., Hardenstine, Royale, Hasan, Abdi, Hazin, Fábio H.B., Hearn, Alex R., Hueter, Robert, Jaidah, Mohammed Y., Labaja, Jessica, Ladino, Felipe, Macena, Bruno C.L., Morris, John J., Norman, Bradley M., Peñaherrera-Palma, Cesar, Pierce, Simon J., Quintero, Lina M., Ramírez-Macías, Dení, Reynolds, Samantha D., Richardson, Anthony J., Robinson, David P., Rohner, Christoph A., Rowat, David R.L., Sheaves, Marcus, Shivji, Mahmood S., Sianipar, Abraham B., Skomal, Gregory B., Soler, German, Syakurachman, Ismail, Thorrold, Simon R., Webb, D. Harry, Wetherbee, Bradley M., White, Timothy D., Clavelle, Tyler, Kroodsma, David A., Thums, Michele, Ferreira, Luciana C., Meekan, Mark G., Arrowsmith, Lucy M., Lester, Emily K., Meyers, Megan M., Peel, Lauren R., Sequeira, Ana M.M., Eguiluz, Victor M., Duarte, Carlos M., and Sims, David W. (2022) Global collision-risk hotspots of marine traffic and the world's largest fish, the whale shark. Proceedings of the National Academy of Sciences of the United States of America, 119 (20). e2117440.

Matley, Jordan K., Klinard, Natalie V., Barbosa Martins, Ana P., Aarestrup, Kim, Aspillaga, Eneko, Cooke, Steven J., Cowley, Paul D., Heupel, Michelle R., Lowe, Christopher G., Lowerre-Barbieri, Susan K., Mitamura, Hiromichi, Moore, Jean Sébastien, Simpfendorfer, Colin A., Stokesbury, Michael J.W., Taylor, Matthew D., Thorstad, Eva B., Vandergoot, Christopher S., and Fisk, Aaron T. (2022) Global trends in aquatic animal tracking with acoustic telemetry. Trends in Ecology & Evolution, 37 (1). pp. 79-94.

Figueiredo, Joana, Thomas, Christopher J., Deleersnijder, Eric, Lambrechts, Jonathan, Baird, Andrew H., Connolly, Sean R., and Hanert, Emmanuel (2022) Global warming decreases connectivity among coral populations. Nature Climate Change, 12 (1). pp. 83-87.

Murray, Nicholas J., Worthington, Thomas A., Bunting, Pete, Duce, Stephanie, Hagger, Valerie, Lovelock, Catherine E., Lucas, Richard, Saunders, Megan I., Sheaves, Marcus, Spalding, Mark, Waltham, Nathan J., and Lyons, Mitchell B. (2022) High-resolution mapping of losses and gains of Earth's tidal wetlands. Science, 376. pp. 744-749.

Wada, Naohisa, Hsu, Ming-Tsung, Tandon, Kshitij, Hsiao, Silver Sung-Yun, Chen, Hsing-Ju, Chen, Yu-Hsiang, Chiang, Pei-Wen, Yu, Sheng-Ping, Lu, Chih-Ying, Chiou, Yu-Jing, Tu, Yung-Chi, Tian, Xuejiao, Chen, Bi-Chang, Lee, Der-Chuen, Yamashiro, Hideyuki, Bourne, David G., and Tang, Sen-lin (2022) High-resolution spatial and genomic characterization of coral-associated microbial aggregates in the coral Stylophora pistillata. Science Advances, 8 (27). eabo2431.

Neil, Rachel C., Cabrera, Maria Gomez, and Uthicke, Sven (2022) Juvenile age and available coral species modulate transition probability from herbivory to corallivory in Acanthaster cf. solaris (Crown-of-Thorns Seastar). Coral Reefs, 41. pp. 843-848.

Cook, Nathan, Smith, Adam, Songcuan, Al, Cassidy, Daniel, Sartori, Greta, and McLeod, Ian (2022) Lessons learned from small-scale coral outplanting intervention at a restoration site on the Great Barrier Reef. Ecological Management and Restoration, 23 (1). pp. 89-93.

Bradley, Michael, Nagelkerken, Ivan, Baker, Ronald, Travers, Michael, and Sheaves, Marcus (2022) Local Environmental Context Structures Animal-Habitat Associations Across Biogeographic Regions. Ecosystems, 25. pp. 237-251.

Guppy, Jarrod L., Marc, Adrien F., and Jerry, Dean R. (2022) Maturation and spawning performance of hormonally-induced precocious female barramundi (Lates calcarifer) and implications of their use in selective breeding. Aquaculture, 552. 737991.

Arbon, P.M., Condon, K., Andrade Martinez, M., and Jerry, D.R. (2022) Molecular detection of six viral pathogens from Australian wild sourced giant black tiger shrimp (Penaeus monodon) broodstock. Aquaculture, 548. 737651.

Genodepa, Jerome, Zeng, Chaoshu, Militz, Thane A., and Southgate, Paul C. (2022) Ontogenetic variation in digestive enzyme activities within embryos and newly-hatched larvae of the tropical spiny lobster, Panulirus ornatus. Aquaculture, 548 (Part 1). 737595.

Jerry, Dean R., Jones, David B., Lillehammer, Marie, Massault, Cecile, Loughnan, Shannon, Cate, Holly S., Harrison, Paul J., Strugnell, Jan M., Zenger, Kyall R., and Robinson, Nicholas A. (2022) Predicted strong genetic gains from the application of genomic selection to improve growth related traits in barramundi (Lates calcarifer). Aquaculture, 549. 737761.

Poulos, Davina E., and McCormick, Mark I. (2022) Prior residency improves the performance of a habitat specialist in a degrading environment. Coral Reefs, 41 (2). pp. 423-433.

Thatcher, Callaway, Hoj, Lone, and Bourne, David G. (2022) Probiotics for coral aquaculture: challenges and considerations. Current Opinion in Biotechnology, 73. pp. 380-386.

Hyde, Ciaran A., Notarbartolo di Sciara, Giuseppe, Sorrentino, Lynn, Boyd, Charlotte, Finucci, Brittany, Fowler, Sarah L., Kyne, Peter M., Leurs, Guido, Simpfendorfer, Colin A., Tetley, Michael J., Womersley, Freya, and Jabado, Rima W. (2022) Putting sharks on the map: A global standard for improving shark area-based conservation. Frontiers in Marine Science, 9. 968853.

Kang, Jingliang, Nagelkerken, Ivan, Rummer, Jodie L., Rodolfo-Metalpa, Riccardo, Munday, Philip L., Ravasi, Timothy, and Schunter, Celia (2022) Rapid evolution fuels transcriptional plasticity to ocean acidification. Global Change Biology, 28 (9). pp. 3007-3022.

Aquino, Jon Irish, Elliott, Lisa, Zeng, Chaoshu, and Paris, Damien B.B.P. (2022) Recent developments in male fertility evaluation, sperm cryopreservation and artificial fertilisation, and their potential application to decapod crustacean aquaculture. Reviews in Aquaculture, 14 (2). pp. 848-889.

Meyer, Lauren, Barry, Christine, Araujo, Gonzalo, Barnett, Adam, Brunnschweiler, Juerg M., Chin, Andrew, Gallagher, Austin, Healy, Teleah, Kock, Alison, Newsome, David, Ponzo, Alessandro, and Huveneers, Charlie (2022) Redefining provisioning in marine wildlife tourism. Journal of Ecotourism, 21 (3). pp. 210-229.

Genodepa, Jerome, Zeng, Chaoshu, Militz, Thane A., and Southgate, Paul C. (2022) Responses of digestive enzyme profiles to various scenarios of food availability in newly-hatched Stage I phyllosoma larvae of the tropical spiny lobster Panulirus ornatus. Comparative Biochemistry and Physiology-Part B: biochemistry & molecular biology, 261. 110751.

Jones, Geoffrey P., Srinivasan, Maya, Galbraith, Gemma F., Berumen, Michael L., and Planes, Serge (2022) Saving Nemo: Extinction Risk, Conservation Status, and Effective Management Strategies for Anemonefishes. In: Laudet, Vincent, and Ravasi, Timothy, (eds.) Evolution, Development and Ecology of Anemonefishes. CRC Press, Boca Raton, FL, USA, pp. 285-298.

Coppock, Amy G., Kingsford, Michael J., Battershill, Christopher N., and Jones, Geoffrey P. (2022) Significance of fish–sponge interactions in coral reef ecosystems. Coral Reefs, 41. pp. 1285-1308.

Webster, Emily G., Hamann, Mark, Shimada, Takahiro, Limpus, Colin, and Duce, Stephanie (2022) Space-use patterns of green turtles in industrial coastal foraging habitat: Challenges and opportunities for informing management with a large satellite tracking dataset. Aquatic Conservation: marine and freshwater ecosystems, 32 (6). pp. 1041-1056.

Tebbett, Sterling B., Morais, Juliano, and Bellwood, David R. (2022) Spatial patchiness in change, recruitment, and recovery on coral reefs at Lizard Island following consecutive bleaching events. Marine Environmental Research, 173. 105537.

Crook, Kevin, Sheaves, Marcus, and Barnett, Adam (2022) Species-specific foraging behaviors define the functional roles of sympatric stingrays. Limnology and Oceanography, 67 (1). pp. 219-230.

Glasson, Christopher R.K., Luiten, Cara A., Carnachan, Susan M., Daines, Alison M., Kidgell, Joel T., Hinkley, Simon F.R., Praeger, Christina, Andrade Martinez, Maria, Sargison, Liam, Magnusson, Marie, de Nys, Rocky, and Sims, Ian M. (2022) Structural characterization of ulvans extracted from blade (Ulva ohnoi) and filamentous (Ulva tepida and Ulva prolifera) species of cultivated Ulva. International Journal of Biological Macromolecules, 194. pp. 571-579.

Buddle, Alice L., Van Dyke, James U., Thompson, Michael B., Simpfendorfer, Colin A., Murphy, Christopher R., Day, Margot L., and Whittington, Camilla M. (2022) Structure and permeability of the egg capsule of the placental Australian sharpnose shark, Rhizoprionodon taylori. Journal of Comparative Physiology B: Biochemical Systemic and Environmental Physiology, 192. pp. 263-273.

Kingsford, Michael J., Krunes, Emily A., and Hall, April E. (2022) Testing the critical size at settlement hypothesis for two species of coral reef fish. Marine Ecology Progress Series, 681. pp. 87-101.

Underwood, Avril H., Derhè, Mia A., and Jacups, Susan (2022) Thermal imaging outshines spotlighting for detecting cryptic, nocturnal mammals in tropical rainforests. Wildlife Research, 49 (6). pp. 491-499.

Bouyoucos, Ian A., Simpfendorfer, Colin A., Planes, Serge, Schwieterman, Gail D., Weideli, Ornella C., and Rummer, Jodie L. (2022) Thermally insensitive physiological performance allows neonatal sharks to use coastal habitats as nursery areas. Marine Ecology Progress Series, 682. pp. 137-152.

Quigley, Kate M., Hein, Margaux, and Suggett, David J. (2022) Translating the 10 golden rules of reforestation for coral reef restoration. Conservation Biology, 36 (4). e13890.

Martins, A.P.B., Matley, JK., Heupel, M.R., Fisk, A.T., Chin, A., and Simpfendorfer, C.A. (2022) Trophic ecology of sympatric juvenile stingrays within a nursery area. Marine and Freshwater Research, 73 (5). pp. 676-686.

D'Alberto, Brooke M., White, William T., Chin, Andrew, Dharmadi, , and Simpfendorfer, Colin A. (2022) Untangling the Indonesian tangle net fishery: Describing a data-poor fishery targeting large, threatened rays (Superorder Batoidea). Aquatic Conservation: marine and freshwater ecosystems, 32 (2). pp. 366-384.

Condon, Kelly, Huerlimann, Roger, Charles, Tony, Lowrey, Ryan, Arbon, Phoebe, and Jerry, Dean R. (2022) Using bacterial whole genome sequencing to identify toxin genes associated with disease outbreaks in black tiger shrimp (Penaeus monodon) aquaculture production. Aquaculture, 546. 737255.

Pattiselanno, Freddy, Iriansul, , Barnes, Paul A., and Arobaya, Agustina Y.S. (2022) Using local ecological knowledge to locate the western long-beaked echidna Zaglossus bruijnii on the Vogelkop Peninsula, West Papua, Indonesia. Oryx, 56 (4). pp. 636-638.

Kingsford, M.J., and Cole, R.G. (2022) Vertical distribution patterns of ichthyoplankton in temperate waters of New Zealand. Marine and Freshwater Research, 73 (4). pp. 503-519.

Ingram, Daniel J., Prideaux, Margi, Hodgins, Nicola K., Frisch-Nwakanma, Heidrun, Avila, Isabel C., Collins, Tim, Cosentino, Mel, Keith-Diagne, Lucy W., Marsh, Helene, Shirley, Matthew H., Van Waerebeek, Koen, Djondo, Maximin K., Fukuda, Yusuke, Glaus, Kerstin B.J., Jabado, Rima W., Lang, Jeffrey W., Lüber, Sigrid, Manolis, Charlie, Webb, Grahame J.W., and Porter, Lindsay (2022) Widespread Use of Migratory Megafauna for Aquatic Wild Meat in the Tropics and Subtropics. Frontiers in Marine Science, 9. 837447.

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Mihalitsis, Michalis, Hemingson, Christopher R., Goatley, Christopher H.R., and Bellwood, David R. (2021) The role of fishes as food: a functional perspective on predator–prey interactions. Functional Ecology, 35 (5). pp. 1109-1119.

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Candebat, Caroline L., Booth, Mark A., and Pirozzi, Igor (2021) The sulfur amino acid requirements of juvenile Yellowtail Kingfish (Seriola lalandi). Aquaculture, 534. 736234.

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Templeman, Michelle A., McKenzie, Madeline R., and Kingsford, Michael J. (2021) The utility of jellyfish as marine biomonitors. Marine Pollution Bulletin, 173. 113056.

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Worthington, Thomas A., Andradi-Brown, Dominic A., Bhargava, Radhika, Buelow, Christina, Bunting, Pete, Duncan, Clare, Fatoyinbo, Lola, Friess, Daniel A., Goldberg, Liza, Hilarides, Lammert, Lagomasino, David, Landis, Emily, Longley-Wood, Kate, Lovelock, Catherine E., Murray, Nicholas J., Narayan, Siddharth, Rosenqvist, Ake, Sievers, Michael, Simard, Marc, Thomas, Nathan, van Eijk, Pieter, Zganjar, Chris, and Spalding, Mark D. (2020) Harnessing big data to support the conservation and rehabilitation of mangrove forests globally. One Earth, 2 (5). pp. 429-443.

Gacesa, Ranko, Hung, Julia Yun-hsuan, Bourne, David G., and Long, Paul F. (2020) Horizontal transfer of a natterin-like toxin encoding gene within the holobiont of the reef building coral Acropora digitifera (Cnidaria:Anthozoa: Scleractinia) and across multiple animal linages. Journal of Venom Research, 10. pp. 7-12.

Wei, Yujie, Lin, Dongdong, Xu, Zhanning, Gao, Xiaoman, Zeng, Chaoshu, and Ye, Haihui (2020) A possible role of crustacean cardioactive peptide in regulating immune response in hepatopancreas of mud crab. Frontiers in Immunology, 11. 711.

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Tebbett, Sterling B., Streit, Robert P., and Bellwood, David R. (2020) A 3D perspective on sediment accumulation in algal turfs: implications of coral reef flattening. Journal of Ecology, 108 (1). pp. 70-80.

Tebbett, Sterling B., Goatley, Christopher H. R., Streit, Robert P., and Bellwood, David R. (2020) Algal turf sediments limit the spatial extent of function delivery on coral reefs. Science of the Total Environment, 734. 139422.

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Priyambodo, Bayu, Jones, Clive M., and Sammut, Jesmond (2020) Assessment of the lobster puerulus (Panulirus homarus and Panulirus ornatus, Decapoda: Palinuridae) resource of Indonesia and its potential for sustainable harvest for aquaculture. Aquaculture, 528. 735563.

Bourillon, Bastien, Acou, Anthony, Trancart, Thomas, Belpaire, Claude, Covaci, Adrian, Bustamante, Paco, Faliex, Elisabeth, Amilhat, Elsa, Malarvannan, Govindan, Virag, Laure, Aarestrup, Kim, Bervoets, Lieven, Boisneau, Catherine, Boulenger, Clarisse, Gargan, Paddy, Becerra-Jurado, Gustavo, Lobon-Cervia, Javier, Maes, Gregory E., Pedersen, Michael Ingemann, Poole, Russell, Sjoberg, Niklas, Wickstrom, Hakan, Walker, Alan, Righton, David, and Feunteun, Eric (2020) Assessment of the quality of European silver eels and tentative approach to trace the origin of contaminants - a European overview. Science of the Total Environment, 743. 140675.

Konovalov, Dmitry A., Swinhoe, Natalie, Efremova, Dina B., Birtles, R. Alastair, Kusetic, Martha, Hillcoat, Suzanne, Curnock, Matthew I., Williams, Genevieve, and Sheaves, Marcus (2020) Automatic sorting of Dwarf Minke Whale underwater images. Information, 11 (4). 200.

Kalidin, Bhavnah Komul, Mattone, Carlo, and Sheaves, Marcus (2020) Barriers to effective monitoring and evaluation of small-scale fisheries in small island developing states: an example from Mauritius. Marine Policy, 118. 103845.

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Laubenstein, Taryn D., Jarrold, Michael D., Rummer, Jodie L., and Munday, Philip L. (2020) Beneficial effects of diel CO₂ cycles on reef fish metabolic performance are diminished under elevated temperature. Science of the Total Environment, 735. 139084.

McLeod, Ian M., Bourne, David, Ceccarelli, Daniela M., Boström-Einarsson, Lisa, Cook, Nathan, Fulton, Stella E., Hancock, Boze, Harrison, Peter, Hein, Margaux, Le Port, Agnès, Paewai-Higgins, Roma, Smith, Hillary A., and Smith, Adam (2020) Best practice coral restoration for the Great Barrier Reef. Report. Reef and Rainforest Research Centre Limited (RRRC), Cairns, QLD, Australia.

Miller, Michaela E., Hamann, Mark, and Kroon, Frederieke J. (2020) Bioaccumulation and biomagnification of microplastics in marine organisms: a review and meta-analysis of current data. PLoS ONE, 15 (10). e0240792.

Barton, Jonathan A., Humphrey, Craig, Bourne, David G., and Hutson, Kate S. (2020) Biological controls to manage Acropora-eating flatworms in coral aquaculture. Aquaculture Environment Interactions, 12. pp. 61-66.

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Velu, Chinnathambi, Cires, Samuel, Brinkman, Diane L., and Heimann, Kirsten (2020) Bioproduct potential of outdoor cultures of Tolypothrix sp.: effect of carbon dioxide and metal-rich wastewater. Frontiers in Bioengineering and Biotechnology, 8. 51.

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Trujillo-González, A., Becker, J.A., Huerlimann, R., Saunders, R.J., and Hutson, K.S. (2020) Can environmental DNA be used for aquatic biosecurity in the aquarium fish trade? Biological Invasions, 22. pp. 1011-1025.

Villacorta Rath, Cecilia, Adekunle, Adeshina I., Edmunds, Richard C., Strugnell, Jan M., Schwarzkopf, Lin, and Burrows, Damien (2020) Can environmental DNA be used to detect first arrivals of the cane toad, Rhinella marina, into novel locations? Environmental DNA, 2 (4). pp. 635-646.

Smart, Jonathan J., White, William T., Baje, Leontine, Chin, Andrew, D'Alberto, Brooke M., Grant, Michael I., Mukherji, Sushmita, and Simpfendorfer, Colin A. (2020) Can multi-species shark longline fisheries be managed sustainably using size limits? Theoretically, yes. Realistically, no. Journal of Applied Ecology, 57 (9). pp. 1847-1860.

Anderson, R Charles, Herrera, Miguel, Ilangakoon, Anoukchika D., Koya, K.M., Moazzam, M., Mustika, Putu L., and Sutaria, Dipani N. (2020) Cetacean bycatch in Indian Ocean tuna gillnet fisheries. Endangered Species Research, 41. pp. 39-53.

Panicker, Divya, Sutaria, Dipani, Kumar, Ajith, and Stafford, Kathleen M. (2020) Cetacean distribution and diversity in Lakshadweep waters, India, using a platform of opportunity: October 2015 to April 2016. Aquatic Mammals, 46 (1). pp. 80-92.

Gainsford, A., Jones, G.P., Gardner, M.G., and van Herwerden, L. (2020) Characterisation and cross-amplification of 42 microsatellite markers in two Amphiprion species (Pomacentridae) and a natural hybrid anemonefish to inform genetic structure within a hybrid zone. Molecular Biology Reports, 47 (2). pp. 1521-1525.

Cantalice, Kleyton Magno, Alvarado-Ortega, Jesús, and Bellwood, David Roy (2020) †Chaychanus gonzalezorum gen. et sp. nov.: A damselfish fossil (Percomorphaceae; Pomacentridae), from the Early Paleocene outcrop of Chiapas, Southeastern Mexico. Journal of South American Earth Sciences, 98. 102322.

Araujo, Gonzalo, Legaspi, Christine, Matthews, Kinsey, Ponzo, Alessandro, Chin, Andrew, and Manjaji-Matsumoto, B. Mabel (2020) Citizen science sheds light on the cryptic ornate eagle ray Aetomylaeus vespertilio. Aquatic Conservation, 30 (10). pp. 2012-2018.

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Johnson, Johanna E., Hooper, Eryn, and Welch, David J. (2020) Community marine monitoring toolkit: a tool developed in the Pacific to inform community-based marine resource management. Marine Pollution Bulletin, 159. 111498.

Basel, Britt, Goby, Gillian, and Johnson, Johanna (2020) Community-based adaptation to climate change in villages of Western Province, Solomon Islands. Marine Pollution Bulletin, 156. 111266.

Payet, Samuel D., Lowe, Jake R., Mapstone, Bruce D., Pratchett, Morgan S., Sinclair-Taylor, Tane H., Taylor, Brett M., Waldie, Peter A., and Harrison, Hugo B. (2020) Comparative demography of commercially important species of coral grouper, Plectropomus leopardus and P. laevis, from Australia's great barrier reef and Coral Sea marine parks. Journal of Fish Biology, 97 (4). pp. 1165-1176.

Glasl, Bettina, Robbins, Steven, Frade, Pedro R., Marangon, Emma, Laffy, Patrick W., Bourne, David G., and Webster, Nicole N. (2020) Comparative genome-centric analysis reveals seasonal variation in the function of coral reef microbiomes. ISME Journal: multidisciplinary journal of microbial ecology, 14. pp. 1435-1450.

Nayfa, Maria G., Jones, Dave B., Benzie, John A.H., Jerry, Dean R., and Zenger, Kyall R. (2020) Comparing genomic signatures of selection between the Abbassa Strain and eight wild populations of Nile tilapia (Oreochromis niloticus) in Egypt. Frontiers in Genetics, 11. 567969.

Hair, Cathy, Militz, Thane, Daniels, Nicholas, and Southgate, Paul C. (2020) Comparison of survival, growth and burying behavior of cultured and wild sandfish (Holothuria scabra) juveniles: implications for ocean mariculture. Aquaculture, 526. 735355.

Blake, Denise F., Crowe, Melissa, Lindsay, David, Brouff, Annie, Mitchell, Simon, Leggat, Peter, and Pollock, Neal (2020) Comparison of tissue oxygenation achieved breathing oxygen using different delivery devices and flow rates. Diving and Hyperbaric Medicine, 50 (1). pp. 34-42.

Barrios-Garrido, Hector, Shimada, Takahiro, Diedrich, Amy, and Hamann, Mark (2020) Conservation and enforcement capacity index (CECi): integrating human development, economy, and marine turtle status. Journal of Environmental Management, 262. 110311.

Bradley, Michael, Nagelkerken, Ivan, Baker, Ronald, and Sheaves, Marcus (2020) Context dependence: a conceptual approach for understanding the habitat relationships of Coastal Marine Fauna. BioScience, 70 (11). pp. 986-1004.

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Shao, Luchang, and Zeng, Chaoshu (2020) Survival, growth, ingestion rate and foraging behavior of larval green mandarin fish (Synchiropus splendidus) fed copepods only versus co-fed copepods with rotifers. Aquaculture, 520. 734958.

Noordin, Noordiyana M., Zeng, Chaoshu, and Southgate, Paul C. (2020) Survival, molting pattern, and growth of early blue swimmer crab, Portunus pelagicus, juveniles fed diets containing varying levels of cholesterol. Journal of the World Aquaculture Society, 51. pp. 255-265.

Downie, Adam T., Illing, Bjorn, Faria, Ana, and Rummer, Jodie L. (2020) Swimming performance of marine fish larvae: review of a universal trait under ecological and environmental pressure. Reviews in Fish Biology and Fisheries, 30 (1). pp. 93-108.

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Timmiss, Libby A., Martin, John M., Murray, Nicholas J., Welbergen, Justin A., Westcott, David, McKeown, Adam, and Kingsford, Richard T. (2020) Threatened but not conserved: flying-fox roosting and foraging habitat in Australia. Australian Journal of Zoology, 68 (6). pp. 226-233.

Martins, A. P. B., Heupel, M. R., Oakley-Cogan, A., Chin, A., and Simpfendorfer, C. (2020) Towed-float GPS telemetry: a tool to assess movement patterns and habitat use of juvenile stingrays. Marine and Freshwater Research, 71 (1). pp. 89-98.

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Huertas, Victor, and Bellwood, David R. (2020) Trophic separation in planktivorous reef fishes: a new role for mucus? Oecologia, 192 (3). pp. 813-822.

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Rushton, Cindy, and Wilson, Kimberley (2020) Understanding the work of FLOs through a recovery framework lens. International Journal of Inclusive Education, 24 (1). pp. 1-14.

Harohau, Daykin, Blythe, Jessica, Sheaves, Marcus, and Diedrich, Amy (2020) Uneven adoption of tilapia aquaculture in rural Solomon Islands. Aquaculture International, 28. pp. 2093-2109.

Paez-Rosas, Diego, Pazmino, Diana A., and Riofrio-Lazo, Marjorie (2020) Unprecedented records of Guadalupe and Juan Fernandez fur seals in the Galapagos Archipelago. Aquatic Mammals, 46 (6). pp. 549-555.

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Magnusson, Marie, Vucko, Matthew J., Neoh, Tze Loon, and de Nys, Rocky (2020) Using oil immersion to deliver a naturally-derived, stable bromoform product from the red seaweed Asparagopsis taxiformis. Algal Research, 51. 102065.

Chin, A., Rigby, C., Short, A., and White, W.T. (2020) Verified records of Kuhl's devil ray (Mobula kuhlii) in the Solomon Islands from citizen scientists. Pacific Conservation Biology, 26. pp. 100-101.

Pascelli, Cecilia, Laffy, Patrick W., Botté, Emmanuelle, Kupresanin, Marija, Rattei, Thomas, Lurgi, Miguel, Ravasi, Timothy, and Webster, Nicole S. (2020) Viral ecogenomics across the Porifera. Microbiome, 8. 144.

Sherman, C. Samantha, Heupel, Michelle R., Moore, Stephen K., Chin, Andrew, and Simpfendorfer, Colin A. (2020) When sharks are away, rays will play: effects of top predator removal in coral reef ecosystems. Marine Ecology - Progress Series, 641. pp. 145-157.

Pattiselanno, Freddy, Lloyd, Janice K.F., Sayer, Jeffrey, Boedhihartono, Agni Klintuni, and Arobaya, Agustina (2020) Wild meat trade chain on the Bird's Head Peninsula of West Papua Province, Indonesia. Journal of Ethnobiology, 40 (2). pp. 202-217.

Fingerhut, Legana C. H. W., Miller, David J., Strugnell, Jan M., Daly, Norelle L., and Cooke, Ira R. (2020) ampir: an R package for fast genome-wide prediction of antimicrobial peptides. Bioinformatics, 36 (21). btaa653.

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Candebat, Caroline L., Booth, Mark, Williamson, Jane E., and Pirozzi, Igor (2020) The critical oxygen threshold of Yellowtail Kingfish (Seriola lalandi). Aquaculture, 516. 734519.

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Hayes, Matthew A., McClure, Eva C., York, Paul H., Jinks, Kristin I., Rasheed, Michael A., Sheaves, Marcus, and Connolly, Rod M. (2020) The differential importance of deep and shallow seagrass to Nekton assemblages of The Great Barrier Reef. Diversity, 12 (8). 292.

Nordborg, F. Mikaela, Jones, Ross J., Oelgemöller, Michael, and Negri, Andrew P. (2020) The effects of ultraviolet radiation and climate on oil toxicity to coral reef organisms – a review. Science of the Total Environment, 720. 137486.

Armstrong, Amelia J., Armstrong, Asia O., Bennett, Michael B., McGregor, Frazer, Abrantes, Kátya G., Barnett, Adam, Richardson, Anthony J., Townsend, Kathy A., and Dudgeon, Christine L. (2020) The geographic distribution of reef and oceanic manta rays (Mobula alfredi and Mobula birostris) in Australian coastal waters. Journal of Fish Biology, 96 (3). pp. 835-840.

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Saleh, Alzayat, Laradji, Issam H., Konovalov, Dmitry A., Bradley, Michael, Vazquez, David, and Sheaves, Marcus (2020) A realistic fish-habitat dataset to evaluate algorithms for underwater visual analysis. Scientific Reports, 10. 14671.

Rigg, Damian, Seymour, Jamie E., Courtney, Robert L., and Jones, Clive M. (2020) A review of juvenile redclaw crayfish Cherax quadricarinatus (von Martens, 1898) Aquaculture: global production practices and innovation. Freshwater Crayfish, 25 (1). pp. 13-30.

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Barton, Jonathan A., Willis, Bette L., and Hutson, Kate S. (2017) Coral propagation: a review of techniques for ornamental trade and reef restoration. Reviews in Aquaculture, 9 (3). pp. 238-256.

Chin, A., Simpfendorfer, C.A., White, W.T., Wardell, G.J., McAuley, R.B., and Heupel, M.R. (2017) Crossing lines: a multidisciplinary framework for assessing connectivity of hammerhead sharks across jurisdictional boundaries. Scientific Reports, 7. 46061.

Karthikeyan, Obulisamy Parthiba, Nadarajan, Saravanan, Cirés, Samuel, Alvarez-Roa, Carlos, Razaghi, Ali, Chidambarampadmavathy, Karthigeyan, Velu, Chinnathambi, Subashchandrabose, Gobalakrishnan, and Heimann, Kirsten (2017) Culture scale-up and immobilisation of a mixed methanotrophic consortium for methane remediation in pilot-scale bio-filters. Environmental Technology, 38 (4). pp. 474-482.

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Humanes, Adriana, Ricardo, Gerard F., Willis, Bette L., Fabricius, Katharina E., and Negri, Andrew P. (2017) Cumulative effects of suspended sediments, organic nutrients and temperature stress on early life history stages of the coral Acropora tenuis. Scientific Reports, 7. 44101.

Baird, Andrew H., Hoogenboom, Mia O., and Huang, Danwei (2017) Cyphastrea salae, a new species of hard coral from Lord Howe Island, Australia (Scleractinia, Merulinidae). ZooKeys, 662. pp. 49-66.

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Cipresso Pereira, Pedro Henrique, Bezerra dos Santos, Marcus Vinicius, Lippi, Daniel Lino, de Paula Silva, Pedro Henrique, and Barros, Breno (2017) Difference in the trophic structure of fish communities between artificial and natural habitats in a tropical estuary. Marine and Freshwater Research, 68 (3). pp. 473-483.

Neave, Matthew J., Rachmawati, Rita, Xun, Liping, Michell, Craig T., Bourne, David G., Apprill, Amy, and Voolstra, Christian R. (2017) Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales. ISME Journal: multidisciplinary journal of microbial ecology, 11 (1). pp. 186-200.

Mooney, Christopher J., and Kingsford, Michael J. (2017) Discriminating populations of medusae (Chironex fleckeri, Cubozoa) using statolith microchemistry. Marine and Freshwater Research, 68. pp. 1144-1152.

Marcelino, Vanessa Rossetto, Morrow, Kathleen M., van Oppen, Madeleine J.H., Bourne, David G., and Verbruggen, Heroen (2017) Diversity and stability of coral endolithic microbial communities at a naturally high p CO2 reef. Molecular Ecology, 26 (19). pp. 5344-5357.

Eddy, Tyler D., Lotze, Heike K., Fulton, Elizabeth A., Coll, Marta, Ainsworth, Cameron H., de Araújo, Júlio Neves, Bulman, Catherine M., Bundy, Alida, Christensen, Villy, Field, John C., Gribble, Neil A., Hasan, Mejs, Mackinson, Steve, and Townsend, Howard (2017) Ecosystem effects of invertebrate fisheries. Fish and Fisheries, 18 (1). pp. 40-53.

Ram, Ravinesh, Chand, Roveena V., Forrest, Andrew, and Southgate, Paul C. (2017) Effect of processing method on quality, texture, collagen and amino acid composition of sandfish (Holothuria scabra). LWT - Food Science and Technology, 86. pp. 261-269.

Pratchett, Morgan S., Cameron, Darren S., Donelson, Jennifer, Evans, Louisa, Frisch, Ashley J., Hobday, Alistair J., Hoey, Andrew S., Marshall, Nadine A., Messmer, Vanessa, Munday, Philip L., Pears, Rachel, Pecl, Gretta, Reynolds, Adam, Scott, Molly, Tobin, Andrew, Tobin, Renae, Welch, David J., and Williamson, David H. (2017) Effects of climate change on coral grouper (Plectropomus spp.) and possible adaptation options. Reviews in Fish Biology and Fisheries, 27. pp. 297-316.

McKnight, Donald T., Schwarzkopf, Lin, Alford, Ross A., Bower, Deborah S., and Zenger, Kyall R. (2017) Effects of emerging infectious diseases on host population genetics: a review. Conservation Genetics, 18. pp. 1235-1245.

Wang, Guizhong, Xu, Jie, Jia, Qilong, Zeng, Chaoshu, Wu, Lisheng, and Wu, Dingxun (2017) Effects of microalgae as diets on the survival, development and fecundity of a pelagic cyclopoid copepod Apocyclops borneoensis. Journal of the Marine Biological Association of the United Kingdom, 97 (6). pp. 1251-1257.

Wu, Xugan, Zeng, Chaoshu, and Southgate, Paul C. (2017) Effects of starvation on survival, biomass, and lipid composition of newly hatched larvae of the blue swimmer crab, Portunus pelagicus (Linnaeus, 1758). Aquaculture International, 25 (1). pp. 447-461.

Humanes Schumann, Adriana, Fink, Artur, Willis, Bette L., Fabricius, Katharina E., de Beer, Dirk, and Negri, Andrew P. (2017) Effects of suspended sediments and nutrient enrichment on juvenile corals. Marine Pollution Bulletin, 125 (1-2). pp. 166-175.

Moyano, Marta, Candebat, Caroline, Ruhbaum, Yannick, Álvarez-Fernández, Santiago, Claireaux, Guy, Zambonino-Infante, José Luis, and Peck, Myron A. (2017) Effects of warming rate, acclimation temperature and ontogeny on the critical thermal maximum of temperate marine fish larvae. PLoS ONE, 12 (7). e0179928.

Souza, Carla A., Murphy, Nicholas, Villacorta-Rath, Cecilia, Woodings, Laura N., Ilyushkina, Irina, Hernandez, Cristian E., Green, Bridget S., Bell, James J., and Strugnell, Jan (2017) Efficiency of ddRAD target enriched sequencing across spiny rock lobster species (Palinuridae: Jasus). Scientific Reports, 7 (1). 6781.

Nowland, Samantha J., Southgate, Paul C., Basiita, Rose K., and Jerry, Dean R. (2017) Elucidation of fine-scale genetic structure of sandfish (Holothuria scabra) populations in Papua New Guinea and northern Australia. Marine and Freshwater Research, 68 (10). pp. 1901-1911.

Everingham, Yvette L., Gyuris, Emma, and Connolly, Sean R. (2017) Enhancing student engagement to positively impact mathematics anxiety, confidence and achievement for interdisciplinary science subjects. International Journal of Mathematical Education in Science and Technology, 48 (8). pp. 1153-1165.

Kerry, James T., and Bellwood, David R. (2017) Environmental drivers of sheltering behaviour in large reef fishes. Marine Pollution Bulletin, 125 (1-2). pp. 254-259.

Elumalai, Punniyakotti, Parthipan, Punniyakotti, Obulisamy, Karthikeyan Parthiba, and Rajasekar, Aruliah (2017) Enzyme-mediated biodegradation of long-chain n-alkanes (C₃₂ and C₄₀) by thermophilic bacteria. 3 Biotech, 7. 116.

Shiel, Brett P., Hall, Nathan E., Cooke, Ira R., Robinson, Nicholas A., and Strugnell, Jan M. (2017) Epipodial tentacle gene expression and predetermined resilience to summer mortality in the commercially important greenlip abalone, Haliotis laevigata. Marine Biotechnology, 19 (2). pp. 191-205.

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Boström-Einarsson, Lisa, and Rivera-Posada, Jairo (2016) Controlling outbreaks of the coral-eating crown-of-thorns starfish using a single injection of common household vinegar. Coral Reefs, 35 (1). pp. 223-228.

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Jones, B., Smullen, R., and Carton, A.G. (2016) Flavour enhancement of freshwater farmed barramundi (Lates calcarifer), through dietary enrichment with cultivated sea lettuce, Ulva ohnoi. Aquaculture, 454. pp. 192-198.

Karthikeyan, Obulisamy Parthiba, Chidambarampadmavathy, Karthigeyan, Nadarjan, Saravanan, and Heimann, Kirsten (2016) Influence of nutrients on oxidation of low level methane by mixed methanotrophic consortia. Environmental Science and Pollution Research, 23 (5). pp. 4346-4357.

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Chin, Andrew, Heupel, Michelle R., Simpfendorfer, Colin A., and Tobin, Andrew J. (2016) Population organisation in reef sharks: new variations in coastal habitat use by mobile marine predators. Marine Ecology Progress Series, 544. pp. 197-211.

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Andreakis, Nikolaos, Costello, Paul, Zanolla, Marianela, Saunders, Gary W., and Mata, Leonardo (2016) Endemic or introduced? Phylogeography of Asparagopsis (Florideophyceae) in Australia reveals multiple introductions and a new mitochondrial lineage. Journal of Phycology, 52 (1). pp. 141-147.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., and Zenger, Kyall R. (2016) Fishing for divergence in a sea of connectivity: the utility of ddRADseq genotyping in a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera. Marine Genomics, 25. pp. 57-68.

D'Anastasi, B.R., van Herwerden, L., Hobbs, J.A., Simpfendorfer, C.A., and Lukoschek, V. (2016) New range and habitat records for threatened Australian sea snakes raise challenges for conservation. Biological Conservation, 194. pp. 66-70.

Mata, Leonardo, Magnusson, Marie, Paul, Nicholas A., and de Nys, Rocky (2016) The intensive land-based production of the green seaweeds Derbesia tenuissima and Ulva ohnoi: biomass and bioproducts. Journal of Applied Phycology, 28 (1). pp. 365-375.

Angell, Alex R., Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2016) The protein content of seaweeds: a universal nitrogen-to-protein conversion factor of five. Journal of Applied Phycology, 28 (1). pp. 511-524.

Kishore, Pranesh, and Southgate, Paul C. (2016) The effect of different culture methods on the quality of round pearls produced by the black-lip pearl oyster Pinctada margaritifera (Linnaeus, 1758). Aquaculture, 451. pp. 65-71.

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Johansson, Charlotte L., Paul, Nicholas A., de Nys, Rocky, and Roberts, David A. (2016) Simultaneous biosorption of selenium, arsenic and molybdenum with modified algal-based biochars. Journal of Environmental Management, 165. pp. 117-123.

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Fuentes, Marianna M.P.B., Chambers, Lynda, Chin, Andrew, Dann, Peter, Dobbs, Kirstin, Marsh, Helene, Poloczanska, Elvira S., Maison, Kim, Turner, Malcolm, and Pressey, Robert L. (2016) Adaptive management of marine mega-fauna in a changing climate. Mitigation and Adaptation Strategies for Global Change, 21 (2). pp. 209-224.

Cole, Andrew J., Neveux, Nicolas, Whelan, Anna, Morton, Jeff, Vis, Mark, de Nys, Rocky, and Paul, Nicholas A. (2016) Adding value to the treatment of municipal wastewater through the intensive production of freshwater macroalgae. Algal Research, 20. pp. 100-109.

Johnson, Johanna E., Welch, David J., Maynard, Jeffrey A., Bell, Johann D., Pecl, Gretta, Robins, Julie, and Saunders, Thor (2016) Assessing and reducing vulnerability to climate change: moving from theory to practical decision-support. Marine Policy, 74. pp. 220-229.

Chivers, Douglas P., McCormick, Mark I., Allan, Bridie J. M., Mitchell, Matthew D., Gonçalves, Emanuel J., Bryshun, Reid, and Ferrari, Maud C.O. (2016) At odds with the group: changes in lateralization and escape performance reveal conformity and conflict in fish schools. Proceedings of the Royal Society of London Series B, Biological Sciences, 283. 20161127. pp. 1-8.

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Sheaves, Janine, Dingle, Liliana, and Mattone, Carlo (2016) Biotic hotspots in mangrove-dominated estuaries: macro-invertebrate aggregation in unvegetated lower intertidal flats. Marine Ecology Progress Series, 556. pp. 31-43.

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Buck, Alexander C.E., Gardiner, Naomi M., and Boström-Einarsson, Lisa (2016) Citric acid injections: an accessible and efficient method for controlling outbreaks of the crown-of-thorns starfish Acanthaster cf. solaris. Diversity, 8 (28). d8040028. pp. 1-12.

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He, Yaya, Liang, Xiao, Jazrawi, Christopher, Montoya, Alejandro, Yuen, Alexander, Cole, Andrew J., Neveux, Nicolas, Paul, Nicholas A., de Nys, Rocky, Maschmeyer, Thomas, and Haynes, Brian S. (2016) Continuous hydrothermal liquefaction of macroalgae in the presence of organic co-solvents. Algal Research, 17. pp. 185-195.

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Gerlach, Gabriele, Atema, Jelle, Raupach, Michael J., Deister, Fabian, Müeller, Anke, and Kingsford, Michael J. (2016) Cryptic species of cardinalfish with evidence for old and new divergence. Coral Reefs, 35 (2). pp. 437-450.

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Duy, Nguyen Dinh Quang, Francis, David S., and Southgate, Paul C. (2016) Development of hyaline spheres in late auriculariae of sandfish, Holothuria scabra: is it a reliable indicator of subsequent performance? Aquaculture, 465. pp. 144-151.

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Thépot, Valentin, and Jerry, Dean R. (2015) The effect of temperature on the embryonic development of barramundi, the Australian strain of Lates calcarifer (Bloch) using current hatchery practices. Aquaculture Reports, 2. pp. 132-138.

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Yu, Kun, Gong, Jie, Huang, Chencui, Huang, Huiyang, Ye, Haihui, Wang, Guizhong, and Zeng, Chaoshu (2015) Characterization of CCTα and evaluating its expression in the mud crab Scylla paramamosain when challenged by low temperatures alone and in combination with high and low salinity. Cell Stress & Chaperones, 20 (5). pp. 853-864.

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Kishore, Pranesh, and Southgate, Paul C. (2015) Development and function of pearl-sacs grown from regenerated mantle graft tissue in the black-lip pearl oyster, Pinctada margaritifera (Linnaeus, 1758). Fish and Shellfish Immunology, 45 (2). pp. 567-573.

Militz, Thane A., Kinch, Jeff, and Southgate, Paul C. (2015) Population demographics of Tridacna noae (Röding, 1798) in New Ireland, Papua New Guinea. Journal of Shellfish Research, 34 (2). pp. 329-335.

Gosch, Björn J., Paul, Nicholas A., De Nys, Rocky, and Magnusson, Marie (2015) Spatial, seasonal, and within-plant variation in total fatty acid content and composition in the brown seaweeds Dictyota bartayresii and Dictyopteris australis (Dictyotales, Phaeophyceae). Journal of Applied Phycology, 27 (4). pp. 1607-1622.

Alajmi, Fahad, Zeng, Chaoshu, and Jerry, Dean R. (2015) Domestication as a novel approach for improving the cultivation of calanoid copepods: a case study with Parvocalanus crassirostris. PLoS ONE, 10 (7). e0133269. pp. 1-16.

Tsuji, Haruo, Zeng, Chaoshu, Romano, Nicholas, Southgate, Paul, and Ye, Haihui (2015) Development of larval culture methods for blue-legged gold coral banded shrimp Stenopus cyanoscelis: effects of prey type and prey density. Fisheries Science, 81 (4). pp. 731-736.

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Huerlimann, Roger, Zenger, Kyall R., Jerry, Dean R., and Heimann, Kirsten (2015) Phylogenetic analysis of nucleus-encoded acetyl-CoA carboxylases targeted at the cytosol and plastid of algae. PLoS ONE, 10 (7). e0131099. pp. 1-10.

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Nguyen Hao, Hoang-Tuong, Karthikeyan, Obulisamy Parthiba, and Heimann, Kirsten (2015) Bio-refining of carbohydrate-rich food waste for biofuels. Energies, 8 (7). pp. 6350-6364.

Carter, Alex B., Carton, Alexander G., McCormick, Mark I., Tobin, Andrew J., and Williams, Ashley J. (2015) Maternal size, not age, influences egg quality of a wild, protogynous coral reef fish Plectropomus leopardus. Marine Ecology Progress Series, 529. pp. 249-263.

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Basiita, Rose K., Zenger, Kyall R., Mwanja, Matthew T., and Jerry, Dean R. (2015) Development of genome-wide microsatellite genetic resources in a commercially important African freshwater fish species – the Nile perch, Lates niloticus. Animal Genetics, 46 (3). p. 340.

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Pratchett, M.S., Blowes, S.A., Coker, D., Kubacki, E., Nowicki, J., and Hoey, A.S. (2015) Indirect benefits of high coral cover for non-corallivorous butterflyfishes. Coral Reefs, 34 (2). pp. 665-672.

Dutra, Leo X.C., Bustamante, Rodrigo H., Sporne, Ilva, van Putten, Ingrid, Dichmont, Catherine M., Ligtermoet, Emma, Sheaves, Marcus, and Deng, Roy A. (2015) Organizational drivers that strengthen adaptive capacity in the coastal zone of Australia. Ocean & Coastal Management, 109. pp. 64-76.

Pollock, F. Joseph, Krediet, Cory J., Garren, Melissa, Stocker, Roman, Winn, Karina, Wilson, Bryan, Huete-Stauffer, Carla, Willis, Bette L., and Bourne, David G. (2015) Visualization of coral host-pathogen interactions using a stable GFP-labeled Vibrio coralliilyticus strain. Coral Reefs, 34 (2). pp. 655-662.

Kerry, J.T., and Bellwood, D.R. (2015) The functional role of tabular structures for large reef fishes: avoiding predators or solar irradiance? Coral Reefs, 34 (2). pp. 693-702.

Payne, Nicholas L., Snelling, Edward P., Fitzpatrick, Richard, Seymour, Jamie, Courtney, Robert, Barnett, Adam, Watanabe, Yuuki, Sims, David W., Squire, Lyle, and Semmens, Jayson M. (2015) A new method for resolving uncertainty of energy requirements in large water breathers: the 'mega-flume' seagoing swim-tunnel respirometer. Methods in Ecology and Evolution, 6 (6). pp. 668-677.

Budd, Alyssa M., Banh, Quyen Q., Domingos, Jose A., and Jerry, Dean R. (2015) Sex control in fish: approaches, challenges and opportunities for aquaculture. Journal of Marine Science and Engineering, 3 (2). jmse3020329. pp. 329-355.

Courtney, Robert, Sachlikidis, Nik, Jones, Rhondda, and Seymour, Jamie (2015) Prey capture ecology of the Cubozoan Carukia barnesi. PLoS ONE, 10 (5). e0124256. pp. 1-12.

Priyambodo, Bayu, Jones, Clive, and Sammut, Jesmond (2015) The effect of trap type and water depth on puerulus settlement in the spiny lobster aquaculture industry in Indonesia. Aquaculture, 442. pp. 132-137.

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Taylor, Brett M., Lindfield, Steven J., and Choat, J. Howard (2015) Hierarchical and scale-dependent effects of fishing pressure and environment on the structure and size distribution of parrotfish communities. Ecography, 38. pp. 520-530.

Ow, Y.X., Collier, C.J., and Uthicke, S. (2015) Responses of three tropical seagrass species to CO2 enrichment. Marine Biology, 162 (5). pp. 1005-1017.

Lédée, Elodie J.I., Heupel, Michelle, Tobin, Andrew J., Knip, Danielle M., and Simpfendorfer, Colin A. (2015) A comparison between traditional kernel-based methods and network analysis: an example from two nearshore shark species. Animal Behaviour, 103. pp. 17-28.

Kumar, Senthil Arun, Magnusson, Marie, Ward, Leigh C., Paul, Nicholas A., and Brown, Lindsay (2015) A green algae mixture of Scenedesmus and Schroederiella attenuates obesity-linked metabolic syndrome in rats. Nutrients, 7 (4). pp. 2771-2787.

Chotnipat, Soranot, Miller, Terrence L., Knuckey, Richard M., and Hutson, Kate S. (2015) Molecular and morphological evidence for the widespread distribution of Laticola paralatesi infecting wild and farmed Lates calcarifer in Australia. Diseases of Aquatic Organisms, 113 (3). pp. 195-205.

Lédée, Elodie J.I., Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2015) Movements and space use of giant trevally in coral reef habitats and the importance of environmental drivers. Animal Biotelemetry, 3. 6. pp. 1-14.

Gamble, Steven, Pirozzi, Igor, Hall, Michael R., Zeng, Chaoshu, Conlan, Jessica A., and Francis, David S. (2015) The effects of pre-digested protein sources on the performance of early–mid stage Panulirus ornatus phyllosoma. Aquaculture, 440. pp. 17-24.

Roberts, David A., Paul, Nicholas A., Bird, Michael I., and de Nys, Rocky (2015) Bioremediation for coal-fired power stations using macroalgae. Journal of Environmental Management, 153. pp. 25-32.

Hodge, Jennifer, and Bellwood, David R. (2015) On the relationship between species age and geographical range in reef fishes: are widespread species older than they seem? Global Ecology and Biogeography , 24 (4). pp. 495-505.

Boaden, A.E., and Kingsford, M.J. (2015) Predators drive community structure in coral reef fish assemblages. Ecosphere, 6 (4). 46. pp. 1-33.

Miller, G.M., Kroon, F.J., Metcalfe, S., and Munday, P.L. (2015) Temperature is the evil twin: effects of increased temperature and ocean acidification on reproduction in a reef fish. Ecological Applications, 25 (3). pp. 603-620.

Adlard, Robert D., Miller, Terrence L., and Smit, Nico J. (2015) The butterfly effect: parasite diversity, environment, and emerging disease in aquatic wildlife. Trends in Parasitology, 31 (4). pp. 160-166.

Allan, Bridie J.M., Domenici, Paolo, Munday, Philip L., and McCormick, Mark I. (2015) Feeling the heat: the effect of acute temperature changes on predator–prey interactions in coral reef fish. Conservation Physiology, 3 (1). cov011. pp. 1-8.

Johansson, Charlotte L., Paul, Nicholas A., de Nys, Rocky, and Roberts, David A. (2015) The complexity of biosorption treatments for oxyanions in a multi-element mine effluent. Journal of Environmental Management, 151. pp. 386-392.

Gong, Jie, Ye, Haihui, Xie, Yinjie, Yang, Yanan, Huang, Huiyang, Li, Shaojing, and Zeng, Chaoshu (2015) Ecdysone receptor in the mud crab Scylla paramamosain: a possible role in promoting ovarian development. Journal of Endocrinology, 224 (3). JOE-14-0526. pp. 273-287.

Kerry, J.T., and Bellwood, D.R. (2015) Do tabular corals constitute keystone structures for fishes on coral reefs? Coral Reefs, 34 (1). pp. 41-50.

Cirés, Samuel, Alvarez-Roa, Carlos, and Heimann, Kirsten (2015) First use of the WAVE™ disposable rocking bioreactor for enhanced bioproduct synthesis by N2-fixing cyanobacteria. Biotechnology and Bioengineering, 112 (3). pp. 621-626.

Lawton, Rebecca J., Carl, Christina, de Nys, Rocky, and Paul, Nicholas A. (2015) Heritable variation in growth and biomass productivity in the clonal freshwater macroalga Oedogonium. Algal Research, 8. pp. 108-114.

Rizzari, Justin R., Bergseth, Brock J., and Frisch, Ashley J. (2015) Impact of conservation areas on trophic interactions between apex predators and herbivores on coral reefs. Conservation Biology, 29 (2). pp. 418-429.

Magnusson, Marie, Mata, Leonardo, Wang, Na, Zhao, Jian, de Nys, Rocky, and Paul, Nicholas A. (2015) Manipulating antioxidant content in macroalgae in intensive land-based cultivation systems for functional food applications. Algal Research, 8. pp. 153-160.

Cipresso Pereira, Pedro Henrique, Barros, Breno, Zemoi, Rahel, and Ferreira, Beatrice Padovani (2015) Ontogenetic diet changes and food partitioning of Haemulon spp. coral reef fishes, with a review of the genus diet. Reviews in Fish Biology and Fisheries, 25 (1). pp. 245-260.

Bradley, Michael, Van Putten, Ingrid, and Sheaves, Marcus (2015) The pace and progress of adaptation: marine climate change preparedness in Australia's coastal communities. Marine Policy, 53. pp. 13-20.

Kent, Megan, Welladsen, Heather M., Mangott, Arnold, and Li, Yan (2015) Nutritional evaluation of Australian microalgae as potential human health supplements. PLoS ONE, 10 (2). e0118985. pp. 1-14.

Militz, Thane A., and Hutson, Kate S. (2015) Beyond symbiosis: cleaner shrimp clean up in culture. PLoS ONE, 10 (2). e0117723. pp. 1-11.

Matley, J.K., Heupel, M.R., and Simpfendorfer, C.A. (2015) Depth and space use of leopard coralgrouper Plectropomus leopardus using passive acoustic tracking. Marine Ecology Progress Series, 521. pp. 201-216.

Whalan, Steve, Abdul Wahab, Muhammad A., Sprungala, Susanne, Poole, Andrew J., and de Nys, Rocky (2015) Larval settlement: the role of surface topography for sessile coral reef invertebrates. PLoS ONE, 10 (2). e0117675. pp. 1-17.

Brazenor, Alexander K., and Hutson, Kate S. (2015) Effects of temperature and salinity on the life cycle of Neobenedenia sp. (Monogenea: Capsalidae) infecting farmed barramundi (Lates calcarifer ). Parasitology Research, 114 (5). pp. 1875-1886.

Kumar, Senthil Arun, Magnusson, Marie, Ward, Leigh C., Paul, Nicholas A., and Brown, Lindsay (2015) Seaweed supplements normalise metabolic, cardiovascular and liver responses in high-carbohydrate, high-fat fed rats. Marine Drugs, 13 (2). pp. 788-805.

Roberts, David A., Paul, Nicholas A., Dworjanyn, Symon A., Hu, Yi, Bird, Michael I., and de Nys, Rocky (2015) Gracilaria waste biomass (sampah rumput laut) as a bioresource for selenium biosorption. Journal of Applied Phycology, 27 (1). pp. 611-620.

Januchowski-Hartley, Fraser A., Graham, Nicholas A.J., Cinner, Joshua E., and Russ, Garry R. (2015) Local fishing influences coral reef fish behavior inside protected areas of the Indo-Pacific. Biological Conservation, 182. pp. 8-12.

Hall, N.M., Berry, K.L.E., Rintoul, L., and Hoogenboom, M.O. (2015) Microplastic ingestion by scleractinian corals. Marine Biology, 162 (3). pp. 725-732.

Espinoza, Mario, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2015) Residency patterns and movements of grey reef sharks (Carcharhinus amblyrhynchos) in semi-isolated coral reef habitats. Marine Biology, 162 (2). pp. 343-358.

Gosch, Björn J., Paul, Nicholas A., de Nys, Rocky, and Magnusson, Marie (2015) Seasonal and within-plant variation in fatty acid content and composition in the brown seaweed Spatoglossum macrodontum (Dictyotales, Phaeophyceae). Journal of Applied Phycology, 27 (1). pp. 387-398.

Akhila, Dharnappa Sannejal, Mani, Madhu K., Rai, Praveen, Condon, Kelly, Owens, Leigh, and Karunasagar, Indrani (2015) Antisense RNA mediated protection from white spot syndrome virus (WSSV) infection in Pacific white shrimp Litopenaeus vannamei. Aquaculture, 435. pp. 306-309.

Gainsford, A., Van Herwerden, L., and Jones, G.P. (2015) Hierarchical behaviour, habitat use and species size differences shape evolutionary outcomes of hybridization in a coral reef fish. Journal of Evolutionary Biology, 28 (1). pp. 205-222.

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Silva Leal, Isabela Carolina, de Araújo, Maria Elisabeth, da Cunha, Simone Rabelo, and Cipresso Pereira, Pedro Henrique (2015) The influence of fire-coral colony size and agonistic behaviour of territorial damselfish on associated coral reef fish communities. Marine Environmental Research, 108. pp. 45-54.

Russ, Garry R., Questel, Sarah-Lee A., Rizzari, Justin R., and Alcala, Angel C. (2015) The parrotfish-coral relationship: refuting the ubiquity of a prevailing paradigm. Marine Biology, 162 (10). pp. 2029-2045.

Berner, Florian, Heimann, Kirsten, and Sheehan, Madoc (2015) A perfused membrane biofilm reactor for microalgae cultivation in tropical conditions. In: Proceedings of the 16th Asia Pacific Confederation of Chemical Engineering Congress (2015) 3133047. pp. 291-301. From: APCChE 2015: 16th Asia Pacific Confederation of Chemical Engineering Congress, 27 September - 1 October 2015, Melbourne, VIC, Australia.

Machado, Lorenna, Kinley, Robert D., Magnusson, Marie, de Nys, Rocky, and Tomkins, Nigel W. (2015) The potential of macroalgae for beef production systems in Northern Australia. Journal of Applied Phycology, 27 (5). pp. 2001-2005.

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Trieu, Nancy, Cutmore, Scott C., Miller, Terrence L., and Cribb, Thomas H. (2015) A species pair of Bivesicula Yamaguti, 1934 (Trematoda: Bivesiculidae) in unrelated Great Barrier Reef fishes: implications for the basis of speciation in coral reef fish trematodes. Systematic Parasitology, 91 (3). pp. 231-239.

Noble, Tansyn, Robson, Heather, Saunders, Richard, and Jerry, Dean (2015) The utility of eDNA as a tilapia surveillance tool. Report. Invasive Animalc Cooperative Research Centre, Canberra, ACT, Australia.

Williamson, David H., Ceccarelli, Daniela M., Evans, Richard D., Hill, Jos K., and Russ, Garry R. (2014) Derelict fishing line provides a useful proxy for estimating levels of non-compliance with no-take marine reserves. PLoS One, 9 (12). e114395. pp. 1-21.

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Rivera-Posada, Jairo, Pratchett, Morgan S., Aguilar, Catalina, Grand, Alexandra, and Caballes, Ciemon F. (2014) Bile salts and the single-shot lethal injection method for killing crown-of-thorns sea stars (Acanthaster planci). Ocean & Coastal Management, 102 (A). pp. 383-390.

Taylor, Brett M., Houk, Peter, Russ, Garry R., and Choat, J. Howard (2014) Life histories predict vulnerability to overexploitation in parrotfishes. Coral Reefs, 33 (4). pp. 869-878.

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Abdul Wahab, Muhammad Azmi, de Nys, Rocky, Abdo, David, Webster, Nicole, and Whalan, Steve (2014) The influence of habitat on post-settlement processes, larval production and recruitment in a common coral reef sponge. Journal of Experimental Marine Biology and Ecology, 461. pp. 162-172.

Rigby, Cassandra L., Wedding, Brett B., Grauf, Steve, and Simpfendorfer, Colin A. (2014) The utility of near infrared spectroscopy for age estimation of deepwater sharks. Deep-sea Research Part I: Oceanographic Research Papers, 94. pp. 184-194.

Razaghi, Ali, Kartik, Obulisamy, Owens, Leigh, and Heimann, Kirsten (2014) Methane oxidation by the oleaginous yeast, Rhodotorula glutinis – fact or fiction? In: [Presented at the North Queensland Festival of Life Sciences 2014]. From: North Queensland Festival of Life Sciences 2014, 5 November 2014, Townsville, QLD, Australia.

Cole, Andrew J., Mata, Leonardo, Paul, Nicholas A., and De Nys, Rocky (2014) Using CO₂ to enhance carbon capture and biomass applications of freshwater macroalgae. GCB Bioenergy, 6. pp. 637-645.

Sharp, Michael F., Kamath, Sandip D., Koeberl, Martina, Jerry, Dean R., O'Hehir, Robyn E., Campbell, Dianne E., and Lopata, Andreas L. (2014) Differential IgE binding to isoallergens from Asian seabass (Lates calcarifer) in children and adults. Molecular Immunology, 62 (1). pp. 77-85.

Hodge, Jennifer R., Van Herwerden, Lynne , and Bellwood, David R. (2014) Temporal evolution of coral reef fishes: global patterns and disparity in isolated locations. Journal of Biogeography, 41 (11). pp. 2115-2127.

Cutmore, Scott C., Miller, Terrence L., Bray, Rodney A., and Cribb, Thomas H. (2014) A new species of Plectognathotrema Layman, 1930 (Trematoda: Zoogonidae) from an Australian monacanthid, with a molecular assessment of the phylogenetic position of the genus. Systematic Parasitology, 89 (3). pp. 237-246.

Wenger, Amelia S., McCormick, Mark I., Endo, Geoff G.K., McLeod, Ian M., Kroom, Frederieke J., and Jones, Geoffrey P. (2014) Suspended sediment prolongs larval development in a coral reef fish. Journal of Experimental Biology, 217. pp. 1122-1128.

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Moser, Gerhard, Raadsma, Herman W., Taylor, Joseph J., and Zenger, Kyall R. (2014) Determining genetic contributions to host oyster shell growth: quantitative trait loci and genetic association analysis for the silver-lipped pearl oyster, Pinctada maxima. Aquaculture, 434. pp. 367-375.

Lavoué, Sébastien, Nakayama, Kouji, Jerry, Dean R., Yamanoue, Yusuke, Yagishita, Naoki, Suzuki, Nobuaki, Nishida, Mutsumi, and Miya, Masaki (2014) Mitogenomic phylogeny of the Percichthyidae and Centrarchiformes (Percomorphaceae): comparison with recent nuclear gene-based studies and simultaneous analysis. Gene, 549 (1). pp. 46-57.

Lema, Kimberley A., Willis, Bette L., and Bourne, David G. (2014) Amplicon pyrosequencing reveals spatial and temporal consistency in diazotroph assemblages of the Acropora millepora microbiome. Environmental Microbiology, 16 (10). pp. 3345-3359.

Kohli, Gurjeet S., Murray, Shauna A., Neilan, Brett A., Rhodes, Lesley L., Harwood, D. Tim, Smith, Kirsty F., Meyer, Lauren, Capper, Angela, Brett, Steve, and Hallegraeff, Gustaaf M. (2014) High abundance of the potentially maitotoxic dinoflagellate Gambierdiscus carpenteri in temperate waters of New South Wales, Australia. Harmful Algae, 39. pp. 134-145.

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Moser, Gerhard, Raadsma, Herman W., Taylor, Joseph J., and Zenger, Kyall R. (2014) Quantitative trait loci and genetic association analysis reveals insights into complex pearl quality traits in donor silver-lipped pearl oysters. Aquaculture, 434. pp. 476-485.

Rodolfo-Metalpa, Riccardo, Hoogenboom, Mia O., Rottier , Cécile, Ramos-Esplá, Alfonso, Baker, Andrew C., Fine, Maoz, and Ferrier-Pagès, Christine (2014) Thermally tolerant corals have limited capacity to acclimatize to future warming. Global Change Biology, 20 (10). pp. 3036-3049.

Alajmi, Fahad, and Zeng, Chaoshu (2014) The effects of stocking density on key biological parameters influencing culture productivity of the calanoid copepod, Parvocalanus crassirostris. Aquaculture, 434. pp. 201-207.

Kramer, M.J., Bellwood, D.R., and Bellwood, O. (2014) Benthic Crustacea on coral reefs: a quantitative survey. Marine Ecology Progress Series, 511. pp. 105-116.

Cirés, Samuel, Alvarez-Roa, Carlos, Wood, Susanna A., Puddick, Jonathan, Loza, Virginia, and Heimann, Kirsten (2014) First report of microcystin-producing Fischerella sp. (Stigonematales, Cyanobacteria) in tropical Australia. Toxicon, 88. pp. 62-66.

Espinoza, Mario, Cappo, Mike, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2014) Quantifying shark distribution patterns and species-habitat associations: implications of marine park zoning. PLoS ONE, 9 (9). e106885. pp. 1-17.

Wolanski, Eric, and Kingsford, Michael J. (2014) Oceanographic and behavioural assumptions in models of the fate of coral and coral reef fish larvae. Journal of the Royal Society Interface, 11 (98). 20140209. pp. 1-12.

Pratchett, Morgan S., Hoey, Andrew S., Cvitanovic, Christopher, Hobbs, Jean-Paul, and Fulton, Christopher J. (2014) Abundance, diversity, and feeding behavior of coral reef butterflyfishes at Lord Howe Island. Ecology and Evolution, 4 (18). pp. 3612-3625.

Taylor, B.M., Rhodes, K.L., Marshell, A., and McIlwain, J.L. (2014) Age-based demographic and reproductive assessment of orangespine Naso lituratus and bluespine Naso unicornis unicornfishes. Journal of Fish Biology, 85 (3). pp. 901-916.

Mouillot, David, Villéger, Sébastien, Parravicini, Valeriano, Kulbicki, Michel, Ernesto Arias-González, Jesus, Bender, Mariana, Chabanet, Pascale, Floeter, Sergio R., Friedlander, Alan, Vigliola, Laurent, and Bellwood, David R. (2014) Functional over-redundancy and high functional vulnerability in global fish faunas on tropical reefs. Proceedings of the National Academy of Sciences of the United States of America, 111 (38). pp. 13757-13762.

Parravicini, Valeriano, Villéger, Sébastien, McClanahan, Tim R., Arias-González, Jesus Ernesto, Bellwood, David R., Belmaker, Jonathan, Chabanet, Pascale, Floeter, Sergio R., Friedlander, Alan M., Guilhaumon, François, Vigliola, Laurent, Kulbicki, Michel, and Mouillot, David (2014) Global mismatch between species richness and vulnerability of reef fish assemblages. Ecology Letters, 17 (9). pp. 1101-1110.

Kramer, M.J., Bellwood, D.R., and Bellwood, O. (2014) Large‐scale spatial variation in epilithic algal matrix cryptofaunal assemblages on the Great Barrier Reef. Marine Biology, 161 (9). pp. 2183-2190.

Xu, Su Yun, Karthigkeyan, Obuli P., Selvam , Ammaiyappan, and Wong, Jonathan W.C (2014) Microbial community distribution and extracellular enzyme activities in leach bed reactor treating food waste: Effect of different leachate recirculation practices. Bioresource Technology, 168. pp. 41-48.

Alajmi, Fahad, Zeng, Chaoshu, and Jerry, Dean R. (2014) Improvement in the reproductive productivity of the tropical calanoid copepod Parvocalanus crassirostris through selective breeding. Aquaculture, 420–421. pp. 18-23.

Langlois, Lucas A., and Hoogenboom, Mia O. (2014) Capacity for short-term physiological acclimation to light does not control the lower depth distributions of branching corals. Marine Ecology Progress Series, 508. pp. 149-162.

Magnusson, Marie, Mata, Leonardo, De Nys, Rocky, and Paul, Nicholas (2014) Biomass, lipid and fatty acid production in large-scale cultures of the marine macroalga Derbesia tenuissima (Chlorophyta). Marine Biotechnology, 16 (4). pp. 456-464.

Paul, Nicholas A., Neveux, Nicolas, Magnusson, Marie, and De Nys, Rocky (2014) Comparative production and nutritional value of "sea grapes" — the tropical green seaweeds Caulerpa lentillifera and C. racemosa. Journal of Applied Phycology, 26 (4). pp. 1833-1844.

Do Huu, Hoang, and Jones, Clive M. (2014) Effects of dietary mannan oligosaccharide supplementation on juvenile spiny lobster Panulirus homarus (Palinuridae). Aquaculture, 432. pp. 258-264.

Miller, Kelsey Irene, and Russ, Garry Ronald (2014) Studies of no-take marine reserves: methods for differentiating reserve and habitat effects. Ocean & Coastal Management, 96. pp. 51-60.

Pollock, F. Joseph, Lamb, Joleah B., Field, Stuart N., Heron, Scott F., Schaffelke, Britta, Shedrawi, George, Bourne, David G., and Willis, Bette L. (2014) Sediment and turbidity associated with offshore dredging increase coral disease prevalence on nearby reefs. PLoS ONE, 9 (7). e102498. pp. 1-9.

Huerlimann, Roger, Steinig, Eike J., Loxton, Heather, Zenger, Kyall R., Jerry, Dean R., and Heimann, Kirsten (2014) Effects of growth phase and nitrogen starvation on expression of fatty acid desaturases and fatty acid composition of Isochrysis aff. galbana (TISO). Gene, 545 (1). pp. 36-44.

Cole, Andrew J., de Nys, Rocky, and Paul, Nicholas A. (2014) Removing constraints on the biomass production of freshwater macroalgae by manipulating water exchange to manage nutrient flux. PLoS ONE, 9 (7). e101284. pp. 1-9.

Tobin, Andrew J., Mapleston, Amos, Harry, Alastair V., and Espinoza, Mario (2014) Big fish in shallow water; use of an intertidal surf-zone habitat by large-bodied teleosts and elasmobranchs in tropical northern Australia. Environmental Biology of Fishes, 97 (7). pp. 821-838.

Sheaves, Marcus, Brookes, Justin, Coles, Robert, Freckelton, Marnie, Groves, Paul, Johnston, Ross, and Wingberg, Pia (2014) Repair and revitalisation of Australia's tropical estuaries and coastal wetlands: opportunities and constraints for the reinstatement of lost function and productivity. Marine Policy, 47. pp. 23-38.

Kidgell, Joel T., de Nys, Rocky, Paul, Nicholas A., and Roberts, David A. (2014) The sequential application of macroalgal biosorbents for the bioremediation of a complex industrial effluent. PLoS ONE, 9 (7). e101309.

Islam, Muhammad Aminul, Brown, Richard, Dowell, Ashley, Eickhoff, Wilhelm, Heimann, Kirsten, von Alvensleben, Nicolas, and Brookes, Peter (2014) Evaluation of a pilot-scale oil extraction from microalgae for biodiesel production. In: Journal of Environmental Science (3) From: ICERE 2014: International Conference on Environment and Renewable Energy, 7-8 May 2014, Paris, France.

Welladsen, Heather, Kent, Megan, Mangott, Arnold, and Li, Yan (2014) Shelf-life assessment of microalgae concentrates: effect of cold preservation on microalgal nutrition profiles. Aquaculture, 430. pp. 241-247.

Huerlimann, Roger, Steinig, Eike J., Loxton, Heather, Zenger, Kyall, Jerry, Dean R., and Heimann, Kirsten (2014) The effect of nitrogen limitation on acetyl-CoA carboxylase expression and fatty acid content in Chromera velia and Isochrysis aff. galbana (TISO). Gene, 543 (2). pp. 204-211.

Carl, Christina, de Nys, Rocky, and Paul, Nicholas A. (2014) The seeding and cultivation of a tropical species of filamentous ulva for algal biomass production. PLoS ONE, 9 (6). e98700. pp. 1-9.

Lane, Daniel J., Zevenhoven, Maria, Ashman, Peter J., van Eyk, Philip J., Hupa, Mikko, de Nys, Rocky, and Lewis, David M. (2014) Algal biomass: occurrence of the main inorganic elements and simulation of ash interactions with bed material. Energy & Fuels, 28 (7). pp. 4622-4632.

Kidgell, Joel T., de Nys, Rocky, Hu, Yi, Paul, Nicholas A., and Roberts, David A. (2014) Bioremediation of a complex industrial effluent by biosorbents derived from freshwater macroalgae. PLoS ONE, 9 (6). e94706. pp. 1-9.

Connolly, Sean R., Macneil, M. Aaron, Caley, M. Julian, Knowlton, Nancy, Cripps, Ed, Hisano, Mizue, Thibaut, Loïc M., Bhattacharya, Bhaskar D., Benedetti-Cechi, Lisandro, Brainard, Russell E., Brandt, Angelika, Bulleri, Fabio, Ellingsen, Kari E., Kaiser, Stefanie, Kröncke, Ingrid, Linse, Katrin, Maggi, Elena, O'Hara, Timothy D., Plaisance, Laetititia, Poore, Gary C.B., Sarkar, Santosh K., Satpathy, Kamala, Schückel, Ulrike, Williams, Alan, and Wilson, Robin S. (2014) Commonness and rarity in the marine biosphere. Proceedings of the National Academy of Sciences of the United States of America, 111 (23). pp. 8524-8529.

Montanari, Stefano R., Hobbs, Jean-Paul A., Pratchett, Morgan S., Bay, Line K., and Van Herwerden, Lynne (2014) Does genetic distance between parental species influence outcomes of hybridization among coral reef butterflyfishes? Molecular Ecology, 23 (11). pp. 2757-2770.

Fox, Rebecca J., and Bellwood, David R. (2014) Herbivores in a small world: network theory highlights vulnerability in the function of herbivory on coral reefs. Functional Ecology, 28 (3). pp. 642-651.

Bentley, B.P., Harvey, E.S., Newman, S.J., Welch, D.J., Smith, A.K., and Kennington, W.J. (2014) Local genetic patchiness but no regional differences between Indo-West Pacific populations of the dogtooth tuna Gymnosarda unicolor. Marine Ecology Progress Series, 506. pp. 267-277.

Chong-Seng, K.M., Nash, K.L., Bellwood, D.R., and Graham, N.A.J. (2014) Macroalgal herbivory on recovering versus degrading coral reefs. Coral Reefs, 33 (2). pp. 409-419.

Brandl, S.J., Hoey, A.S., and Bellwood, D.R. (2014) Micro-topography mediates interactions between corals, algae, and herbivorous fishes on coral reefs. Coral Reefs, 33 (2). pp. 421-430.

Abdul Wahab, M., De Nys, R., Webster, N., and Whalan, S. (2014) Phenology of sexual reproduction in the common coral reef sponge, Carteriospongia foliascens. Coral Reefs, 33 (2). pp. 381-394.

Trave, Claudia, and Sheaves, Marcus (2014) Bimini Islands: a characterization of the two major nursery areas; status and perspectives. SpringerPlus, 3. 270. pp. 1-9.

Ellison, Michael B., de Nys, Rocky, Paul, Nicholas A., and Roberts, David A. (2014) Growth and metal bioconcentration by conspecific freshwater macroalgae cultured in industrial waste water. PeerJ, 2. e401. pp. 1-17.

Abdul Wahab, Muhammad Azmi, de Nys, Rocky, Webster, Nicole, and Whalan, Steve (2014) Larval behaviours and their contribution to the distribution of the intertidal coral reef sponge Carteriospongia foliascens. PLoS ONE, 9 (5). e98181. pp. 1-13.

Carl, Christina, de Nys, Rocky, Lawton, Rebecca J., and Paul, Nicholas A. (2014) Methods for the induction of reproduction in a tropical species of filamentous Ulva. PLoS ONE, 9 (5). e97396. pp. 1-10.

Militz, T.A., Southgate, P.C., Carton, A.G., and Hutson, K.S. (2014) Efficacy of garlic (Allium sativum) extract applied as a therapeutic immersion treatment for Neobenedenia sp. management in aquaculture. Journal of Fish Diseases, 37 (5). pp. 451-461.

Brandl, Simon J., and Bellwood, David R. (2014) Individual-based analyses reveal limited functional overlap in a coral reef fish community. Journal of Animal Ecology, 83 (3). pp. 661-670.

Donelson, Jennifer M., McCormick, Mark I., Booth, David J., and Munday, Philip L. (2014) Reproductive acclimation to increased water temperature in a tropical reef fish. PLoS ONE, 9 (5). e97223. pp. 1-9.

Agha, Ramsy, Lezcano, María Ángeles, Labrador, María del Mar, Cirés, Samuel, and Quesada, Antonio (2014) Seasonal dynamics and sedimentation patterns of Microcystis oligopeptide-based chemotypes reveal subpopulations with different ecological traits. Limnology and Oceanography, 59 (3). pp. 861-871.

Abdul Wahab, Muhammad, Fromont, J., Whalan, S., Webster, N., and Andreakis, N. (2014) Combining morphometrics with molecular taxonomy: how different are similar foliose keratose sponges from the Australian tropics? Molecular Phylogenetics and Evolution, 73. pp. 23-39.

Stella, J.S, Munday, P.L., Walker, S.P.W., Pratchett, M.S., and Jones, G.P. (2014) From cooperation to combat: adverse effect of thermal stress in a symbiotic coral-crustacean community. Oecologia, 174 (4). pp. 1187-1195.

Clements, Kendall D., Angert, Esther R., Montgomery, W. Linn, and Choat, Howard (2014) Intestinal microbiota in fishes: what's known and what's not. Molecular Ecology, 23 (8). pp. 1891-1898.

Poulos, Davina E., and McCormick, Mark I. (2014) Who wins in the battle for space? The importance of priority, behavioural history and size. Animal Behaviour, 90. pp. 305-314.

Lawton, Rebecca J., de Nys, Rocky, Skinner , Stephen, and Paul, Nicholas A. (2014) Isolation and identification of Oedogonium species and strains for biomass applications. PLoS ONE, 9 (3). e90223. pp. 1-9.

Tremblay, P., Grover, R., Maguer, J.F., Hoogenboom, M., and Ferrier-Pagès, C. (2014) Carbon translocation from symbiont to host depends on irradiance and food availability in the tropical coral Stylophora pistillata. Coral Reefs, 33 (1). pp. 1-13.

Vucko, M.J., King, P.C., Poole, A.J., Hu, Yi, Jahedi, M.Z., and de Nys, R. (2014) Assessing the antifouling properties of cold-spray metal embedment using loading density gradients of metal particles. Biofouling, 30 (6). pp. 651-666.

Tang, Lei, Smith-Keune, Carolyn, Gardner, Michael G., and Hardesty, Britta Denise (2014) Development, characterisation and cross-species amplification of 16 novel microsatellite markers for the endangered Black-throated Finch (Poephila cincta) in Australia. Conservation Genetics Resources, 6 (1). pp. 143-146.

Ban, Stephen S., Graham, Nicholas A.J., and Connolly, Sean R. (2014) Evidence for multiple stressor interactions and effects on coral reefs. Global Change Biology, 20 (3). pp. 681-697.

Baker, Ronald, Buckland, Amanda, and Sheaves, Marcus (2014) Fish gut content analysis: robust measures of diet composition. Fish and Fisheries, 15 (1). pp. 170-177.

D'agata, Stéphanie, Mouillot, David, Kulbicki, Michel, Andréföuet, Serge, Bellwood, David R., Cinner, Joshua E., Cowman, Peter F., Kronen, Mecki, Pinca, Silvia, and Vigliola, Laurent (2014) Human-mediated loss of phylogenetic and functional diversity in coral reef fishes. Current Biology, 24 (5). pp. 555-560.

Wakefield, Corey B., Williams, Ashley, Newman, Steve J., Bunel, Melanie, Dowling, Christopher E., Armstrong, Chella A., and Langlois, Tim J. (2014) Rapid and reliable multivariate discrimination for two cryptic Eteline snappers using otolith morphometry. Fisheries Research , 151. pp. 100-106.

Welsh, Stuart A., Jerry, Dean R., and Burrows, Damien W. (2014) A new species of freshwater eel-tailed catfish of the genus Tandanus (Teleostei: Plotosidae) from the wet tropics region of Eastern Australia. Copeia, 1. pp. 136-142.

Shimazu, Takeshi, Cribb, Thomas H., Miller, Terrence L., Urabe, Misako, Van Ha, Nguyen, Thi Binh, Tran, and Shed'ko, Marina B. (2014) Revision of Isoparorchis Southwell, 1913 (Digenea, Hemiuroidea, Isoparorchiidae), parasites of the air bladder of freshwater catfishes: a molecular and morphological study. Bulletin of National Museum of Natural Science, Series A, 40 (1). pp. 15-51.

Chung, Wen-Sung, Marshall, N. Justin, Watson, Sue-Ann, Munday, Philip L., and Nilsson, Göran E. (2014) Ocean acidification slows retinal function in a damselfish through interference with GABAA receptors. Journal of Experimental Biology, 217. pp. 323-326.

Hobbs, J.-P.A., Frisch, A.J., Mutz, S., and Ford, B.M. (2014) Evaluating the effectiveness of teeth and dorsal fin spines for non-lethal age estimation of a tropical reef fish, coral trout Plectropomus leopardus. Journal of Fish Biology, 84 (2). pp. 328-338.

Chivers, Douglas P., McCormick, Mark I., Nilsson, Göran E., Munday, Philip L., Watson, Sue-Ann, Meekan, Mark, Mitchell, Matthew D., Corkill, Katherine C., and Ferrari, Maud C.O. (2014) Impaired learning about predators and lower survival under elevated CO2: a consequence of neurotransmitter interference. Global Change Biology, 20 (2). pp. 515-522.

Gamble, S., Carton, A.G., and Pirozzi, I. (2014) Open-top static respirometry is a reliable method to determine the routine metabolic rate of barramundi, Lates calcarifer. Marine and Freshwater Behaviour and Physiology, 47 (1). pp. 19-28.

Kingsford, M.J., Finn, M.D., O'Callaghan, M.D., Atema, J., and Gerlach, G. (2014) Planktonic larval duration, age and growth of Ostorhinchus doederleini (Pisces: Apogonidae) on the southern Great Barrier Reef, Australia. Marine Biology, 161 (2). pp. 245-259.

Angell, Alex R., Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2014) Variation in amino acid content and its relationship to nitrogen content and growth rate in Ulva ohnoi (Chlorophyta). Journal of Phycology, 50 (1). pp. 216-226.

Domenici, Paolo, Allan, Bridie J.M., Watson, Sue-Ann, McCormick, Mark I., and Munday, Philip L. (2014) Shifting from right to left: the combined effect of elevated CO2 and temperature on behavioural lateralization in a coral reef fish. PLoS One, 9 (1). e87969. pp. 1-6.

Paul, Nicholas A., Svensson, Carl Johan, de Nys, Rocky, and Steinberg, Peter D. (2014) Simple growth patterns can create complex trajectories for the ontogeny of constitutive chemical defences in seaweeds. PLoS ONE, 9 (1). e86893. pp. 1-10.

Taylor, Brett M. (2014) Drivers of protogynous sex change differ across spatial scales. Proceedings of the Royal Society of London Series B, Biological Sciences, 281 (1775). 20132423. pp. 1-8.

Machado, Lorenna, Magnusson, Marie, Paul, Nicholas A., de Nys, Rocky, and Tomkins, Nigel (2014) Effects of marine and freshwater macroalgae on in vitro total gas and methane production. PLoS ONE, 9 (1). e85289. pp. 1-11.

Frisch, Ashley J., Ireland, Matthew, and Baker, Ronald (2014) Trophic ecology of large predatory reef fishes: energy pathways, trophic level, and implications for fisheries in a changing climate. Marine Biology, 161 (1). pp. 61-73.

McNamara, M.K.A., Miller, T.L., and Cribb, T.H. (2014) Evidence for extensive cryptic speciation in trematodes of butterflyfishes (Chaetodontidae) of the tropical Indo-West Pacific. International Journal for Parasitology, 44 (1). pp. 37-48.

Bellwood, David R., Hoey, Andrew S., Bellwood, Orpha, and Goatley, Christopher H.R. (2014) Evolution of long-toothed fishes and the changing nature of fish-benthos interactions on coral reefs. Nature Communications, 5. 3144. pp. 1-6.

Dixson, Danielle L., Jones, Geoffrey P., Munday, Philip L., Planes, Serge, Pratchett, Morgan S., and Thorrold, Simon R. (2014) Experimental evaluation of imprinting and the role innate preference plays in habitat selection in a coral reef fish. Oecologia, 174 (1). pp. 99-107.

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Cipresso Pereira, Pedro Henrique Cipresso, Moraes, Rodrigo Lima, dos Santos, Marcus Vinicius Bezerra, Lippi, Daniel Lino, Feitosa, João Lucas Leão, and UNSPECIFIED (2014) The influence of multiple factors upon reef fish abundance and species richness in a tropical coral complex. Ichthyological Research, 61 (4). pp. 375-384.

Abesamis, Rene A., Green, Alison, Russ, Garry R., and Jadloc, Claro Renato L. (2014) The intrinsic vulnerability to fishing of coral reef fishes and their differential recovery in fishery closures. Reviews in Fish Biology and Fisheries, 24 (4). pp. 1033-1063.

Heinrich, Dennis D.U., Rummer, Jodie L., Morash, Andrea J., Watson, Sue-Ann, Simpfendorfer, Colin, Heupel, Michelle R., and Munday, Philip L. (2014) A product of its environment: the epaulette shark (Hemiscyllium ocellatum) exhibits physiological tolerance to elevated environmental CO(2). Conservation Physiology, 2. pp. 1-12.

Vermeiren, Peter, and Sheaves, Marcus (2014) A remote photographic technique for high replication, large scale understanding of spatial distribution patterns of intertidal crabs. Hydrobiologia, 724 (1). pp. 79-89.

Kessel, S.T., Cooke, S.J., Heupel, M.R., Hussey, N.E., Simpfendorfer, C.A., Vagle, S., and Fisk, A.T. (2014) A review of detection range testing in aquatic passive acoustic telemetry studies. Reviews in Fish Biology and Fisheries, 24 (1). pp. 199-218.

Barnett, Leonie J., Miller, Terrence L., and Cribb, Thomas H. (2014) A review of the currently recognised opecoelid cercariae, including the identification and emergence ecology of Cercaria capricornia XII (Digenea: Opecoelidae) from Nassarius olivaceus (Gastropoda: Nassariidae) in Central Queensland, Australia. Parasitology International, 63 (5). pp. 670-682.

Cribb, Thomas H., Miller, Terrence L., Bray, Rodney A., and Cutmore, Scott C. (2014) The sexual adult of Cercaria praecox Walker, 1971 (Digenea: Fellodistomidae), with the proposal of Oceroma n. g. Systematic Parasitology, 88 (1). pp. 1-10.

Komyakova, Valeriya, Munday, Philip L., and Jones, Geoffrey P. (2013) Relative importance of coral cover, habitat complexity and diversity in determining the structure of reef fish communities. PLoS ONE, 8 (12). e83178. pp. 1-12.

de Paula Silva, Pedro H., Paul, Nicholas A., de Nys, Rocky, and Mata, Leonardo (2013) Enhanced production of green tide algal biomass through additional carbon supply. PLoS ONE, 8 (12). e81164. pp. 1-7.

Hoey, A.S., Brandl, S.J., and Bellwood, D.R. (2013) Diet and cross-shelf distribution of rabbitfishes (f. Siganidae) on the northern Great Barrier Reef: implications for ecosystem function. Coral Reefs, 32 (4). pp. 973-984.

Dubois, Baptiste, Tomkins, Nigel W., Kinley, Robert D., Bai, Mei, Seymour, Scott, Paul, Nicholas A., and de Nys, Rocky (2013) Effect of tropical algae as additives on rumen in vitro gas production and fermentation characteristics. American Journal of Plant Sciences, 4 (12B). pp. 34-43.

Torda, G., Lundgren, P., Willis, B.L., and van Oppen, M.J.H. (2013) Genetic assignment of recruits reveals short- and long-distance larval dispersal in Pocillopora damicornis on the Great Barrier Reef. Molecular Ecology, 22 (23). pp. 5821-5834.

Jones, David B., Jerry, Dean R., Forêt, Sylvain, Konovalov, Dmitry A., and Zenger, Kyall R. (2013) Genome-wide SNP validation and mantle tissue transcriptome analysis in the silver-lipped pearl oyster, Pinctada maxima. Marine Biotechnology, 15 (6). pp. 647-658.

Jeans, Jennifer, Campbell, Douglas A., and Hoogenboom, Mia O. (2013) Increased reliance upon photosystem II repair following acclimation to high-light by coral-dinoflagellate symbioses. Photosynthesis Research, 118 (3). pp. 219-229.

Johansson, C.L., van de Leemput, I.A., Depczynski, M., Hoey, A.S., and Bellwood, D.R. (2013) Key herbivores reveal limited functional redundancy on inshore coral reefs. Coral Reefs, 32 (4). pp. 963-972.

Harrison, Hugo B., Saenz-Agudelo, Pablo, Planes, Serge, Jones, Geoffrey P., and Berumen, Michael L. (2013) On minimizing assignment errors and the trade-off between false positives and negatives in parentage analysis. Molecular Ecology, 22 (23). pp. 5738-5742.

Munday, Philip L., Warner, Robert R., Monro, Keyne, Pandolfi, John M., and Marshall, Dustin J. (2013) Predicting evolutionary responses to climate change in the sea. Ecology Letters, 16 (12). pp. 1488-1500.

Mata, Leonardo, Wright, Emily, Owens, Leigh, Paul, Nicholas, and de Nys, Rocky (2013) Water-soluble natural products from seaweed have limited potential in controlling bacterial pathogens in fish aquaculture. Journal of Applied Phycology, 25 (6). pp. 1963-1973.

Welsh, J.Q., Goatley, C.H.R., and Bellwood, D.R. (2013) The ontogeny of home ranges: evidence from coral reef fishes. Proceedings of the Royal Society of London Series B, Biological Sciences, 280 (1773). 20132066. pp. 1-7.

Roberts, David A., de Nys, Rocky, and Paul, Nicholas A. (2013) The effect of CO2 on algal growth in industrial waste water for bioenergy and bioremediation applications. PLoS ONE, 8 (11). e81631. pp. 1-12.

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Raadsma, Herman W., and Zenger, Kyall R. (2013) A high-density SNP genetic linkage map for the silver-lipped pearl oyster, Pinctada maxima: a valuable resource for gene localisation and marker-assisted selection. BMC Genomics, 14. 810. pp. 1-18.

Curley, B.G., Glasby, T.M., Curley, A.J., Creese, R.G., and Kingsford, M.J. (2013) Enhanced numbers of two temperate reef fishes in a small, partial-take marine protected area related to spearfisher exclusion. Biological Conservation, 167. pp. 435-445.

Miller, Terrence L., Small, Hamish J., Peemoeller, Bhae-Jin, Gibbs, David A., and Shields, Jeffrey D. (2013) Experimental infections of Orchitophrya stellarum (Scuticociliata) in American blue crabs (Callinectes sapidus) and fiddler crabs (Uca minax). Journal of Invertebrate Pathology, 114 (3). pp. 346-355.

Connolly, N.M., and Pearson, R.G. (2013) Nutrient enrichment of a heterotrophic stream alters leaf litter nutritional quality and shredder physiological condition via the microbial pathway. Hydrobiologia, 718 (1). pp. 85-92.

Sato, Yui, Willis, Bette L., and Bourne, David G. (2013) Pyrosequencing-based profiling of archaeal and bacterial 16S rRNA genes identifies a novel archaeon associated with black band disease in corals. Environmental Microbiology, 15 (11). pp. 2994-3007.

Wood, Apanie L., Butler, James R.A., Sheaves, Marcus, and Wani, Jacob (2013) Sport fisheries: opportunities and challenges for diversifying coastal livelihoods in the Pacific. Marine Policy, 42. pp. 305-314.

Raina, Jean-Baptiste, Tapiolas, Dianne M., Foret, Sylvain, Lutz, Adrian, Abrego, David, Ceh, Janja, Seneca, Francois O., Clode, Peta L., Bourne, David G., Willis, Bette L., and Motti, Cherie A. (2013) DMSP biosynthesis by an animal and its role in coral thermal stress response. Nature, 502 (7473). pp. 677-691.

Momigliano, Paolo, Sparrow, Leanne, Blair, David, and Heimann, Kirsten (2013) The diversity of Coolia spp. (Dinophyceae Ostreopsidaceae) in the central Great Barrier Reef region. PLoS ONE, 8 (10). e799278. pp. 1-11.

Walther, Benjamin D., Kingsford, Michael J., and McCulloch, Malcolm T. (2013) Environmental records from Great Barrier Reef corals: inshore versus offshore drivers. PLoS ONE, 8 (10). e77091. pp. 1-14.

Cantacessi, Cinzia, Seddon, Jennifer M., Miller, Terrence L., Leow, Chiuan Yee, Thomas, Laëtitia, Mason, Lyndel, Willis, Charlene, Walker, Giselle, Loukas, Alex, Gasser, Robin B., Jones, Malcolm K., and Hofmann, Andreas (2013) A genome-wide analysis of annexins from parasitic organisms and their vectors. Scientific Reports, 3. 2893. pp. 1-8.

Knight, Jon M., Griffin, Lachlan, Dale, Pat E.R., and Sheaves, Marcus (2013) Short-term dissolved oxygen patterns in sub-tropical mangroves. Estuarine, Coastal and Shelf Science, 131. pp. 290-296.

Lawton, Rebecca J., Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2013) Algal bioremediation of waste waters from land-based aquaculture using Ulva: selecting target species and strains. PLoS ONE, 8 (10). e77344. pp. 1-10.

Manassa, R.P., Dixson, D.L., McCormick, M.I., and Chivers, D.P. (2013) Coral reef fish incorporate multiple sources of visual and chemical information to mediate predation risk. Animal Behaviour, 86 (4). pp. 717-722.

Chivers, Douglas P., Dixson, Danielle L., White, James R., McCormick, Mark I., and Ferrari, Maud C.O. (2013) Degradation of chemical alarm cues and assessment of risk throughout the day. Ecology and Evolution, 3 (11). pp. 3925-3934.

McCormick, Mark I., and Lönnstedt, Oona M. (2013) Degrading habitats and the effect of topographic complexity on risk assessment. Ecology and Evolution, 3 (12). pp. 4221-4229.

Miller, Terrence L., and Cribb, Thomas H. (2013) Dramatic phenotypic plasticity within species of Siphomutabilus n. g. (Digenea: Cryptogonimidae) from Indo-Pacific caesionines (Perciformes: Lutjanidae). Systematic Parasitology, 86 (2). pp. 101-112.

Brazenor, Alexander K., and Hutson, Kate S. (2013) Effect of temperature and salinity on egg hatching and description of the life cycle of Lernanthropus latis (Copepoda: Lernanthropidae) infecting barramundi, Lates calcarifer. Parasitology International, 62 (5). pp. 437-447.

Graham, Erin M., Baird, Andrew H., Willis, Bette L., and Connolly, Sean R. (2013) Effects of delayed settlement on post-settlement growth and survival of scleractinian coral larvae. Oecologia, 173 (2). pp. 431-438.

Nash, Kirsty L., Graham, Nicholas A.J., and Bellwood, David R. (2013) Fish foraging patterns, vulnerability to fishing, and implications for the management of ecosystem function across scale. Ecological Applications, 23 (7). pp. 1632-1644.

Grech, A., Bos, M., Brodie, J., Coles, R., Dale, A., Gilbert, R., Hamann, M., Marsh, H., Neil, K., Pressey, R.L., Rasheed, M.A., Sheaves, M., and Smith, A. (2013) Guiding principles for the improved governance of port and shipping impacts in the Great Barrier Reef. Marine Pollution Bulletin, 75 (1). pp. 8-20.

Miller, Gabrielle M., Watson, Sue-Ann, McCormick, Mark I., and Munday, Philip L. (2013) Increased CO₂ stimulates reproduction in a coral reef fish. Global Change Biology, 19 (10). pp. 3037-3045.

Duchene, David, Klanten, Selma O., Munday, Philip L., Herler, Jürgen, and van Herwerden, Lynne (2013) Phylogenetic evidence for recent diversification of obligate coral-dwelling gobies compared with their host corals. Molecular Phylogenetics and Evolution, 69 (1). pp. 123-132.

Boström-Einarsson, Lisa, Bonin, Mary C., Munday, Philip L., and Jones, Geoffrey P. (2013) Strong intraspecific competition and habitat selectivity influence abundance of a coral-dwelling damselfish. Journal of Experimental Marine Biology and Ecology, 448. pp. 85-92.

Brooker, Rohan M., Jones, Geoffrey P., and Munday, Philip L. (2013) Within-colony feeding selectivity by a corallivorous reef fish: foraging to maximize reward? Ecology and Evolution, 3 (12). pp. 4109-4118.

Price, Bronwyn, McAlpine, Clive A., Kutt, Alex S., Ward, Doug, Phinn, Stuart R., and Ludwig, John A. (2013) Disentangling how landscape spatial and temporal heterogeneity affects savanna birds. PLoS ONE, 8 (9). e74333. pp. 1-12.

Militz, Thane A., Southgate, Paul C., Carton, Alexander G., and Hutson, Kate S. (2013) Dietary supplementation of garlic (Allium sativum) to prevent monogenean infection in aquaculture. Aquaculture, 408-409. pp. 95-99.

Magnusson, Marie, Heimann, Kirsten, Ridd, Michael, and Negri, Andrew P. (2013) Pesticide contamination and phytotoxicity of sediment interstitial water to tropical benthic microalgae. Water Research, 47 (14). pp. 5211-5221.

Botté, Emmanuelle S., Smith-Keune, Carolyn, and Jerry, Dean R. (2013) Temperature: a prolonged confounding factor on cholinesterase activity in the tropical reef fish Acanthochromis polyacanthus. Aquatic Toxicology, 140-141. pp. 337-339.

Todd, Erica V., Blair, David, Farley, Sharon, Farrington, Lachlan, FitzSimmons, Nancy N., Georges, Arthur, Limpus, Colin J., and Jerry, Dean R. (2013) Contemporary genetic structure reflects historical drainage isolation in an Australian snapping turtle, Elseya albagula. Zoological Journal of the Linnean Society, 169 (1). pp. 200-214.

Silva Leal, Isabela Carolina, Cipresso Pereira, Pedro Herique, and de Araújo, Maria Elisabeth (2013) Coral reef fish association and behaviour on the fire coral Millepora spp. in north-east Brazil. Journal of the Marine Biological Association of the United Kingdom, 93 (6). pp. 1703-1711.

Haapkylä, J., Melbourne-Thomas, J., Flavell, M., and Willis, B.L. (2013) Disease outbreaks, bleaching and a cyclone drive changes in coral assemblages on an inshore reef of the Great Barrier Reef. Coral Reefs, 32 (3). pp. 815-824.

Boaden, A.E., and Kingsford, M.J. (2013) Distributions and habitat associations of the bridled monocle bream Scolopsis bilineatus (Nemipteridae): a demographic approach. Journal of Fish Biology, 83 (3). pp. 618-641.

Hodge, Jennifer R., Read, Charmaine I., Bellwood, David R., and van Herwerden, Lynne (2013) Evolution of sympatric species: a case study of the coral reef fish genus Pomacanthus (Pomacanthidae). Journal of Biogeography, 40 (9). pp. 1676-1687.

Brooker, R.M., Munday, P.L., Mcleod, I.M., and Jones, G.P. (2013) Habitat preferences of a corallivorous reef fish: predation risk versus food quality. Coral Reefs, 32 (3). pp. 613-622.

Baker, Ronald, Fry, Brian, Rozas, Lawrence P., and Minello, Thomas J. (2013) Hydrodynamic regulation of salt marsh contributions to aquatic food webs. Marine Ecology Progress Series, 490. pp. 37-52.

Montanari, Stefano R., Gardner, Michael G., Hobbs, Jean-Paul A., Pratchett, Morgan S., Bay, Line K., and van Herwerden, Lynne (2013) Isolation and characterization of twenty microsatellite markers for the study of hybridization in butterflyfish of the genus Chaetodon. Conservation Genetics Resources, 5 (3). pp. 783-786.

Brandl, S.J., and Bellwood, D.R. (2013) Morphology, sociality, and ecology: can morphology predict pairing behavior in coral reef fishes? Coral Reefs, 32 (3). pp. 835-846.

Taylor, B.M., and Mills, J.S. (2013) Movement and spawning migration patterns suggest small marine reserves can offer adequate protection for exploited emperorfishes. Coral Reefs, 32 (4). pp. 1077-1087.

Horne, John B., Momigliano, Paolo, van Herwerden, Lynne, and Newman, Stephen J. (2013) Murky waters: searching for structure in genetically depauperate blue threadfin populations of Western Australia. Fisheries Research, 146. pp. 1-6.

Newton, James R., Zenger, Kyall R., and Jerry, Dean R. (2013) Next-generation transcriptome profiling reveals insights into genetic factors contributing to growth differences and temperature adaptation in Australian populations of barramundi (Lates calcarifer). Marine Genomics, 11. pp. 45-52.

Lönnstedt, Oona M., Munday, Philip L., McCormick, Mark I., Ferrari, Maud C.O., and Chivers, Douglas P. (2013) Ocean acidification and responses to predators: can sensory redundancy reduce the apparent impacts of elevated CO2 on fish? Ecology and Evolution, 3 (10). pp. 3565-3575.

Johansen, J.L., and Jones, G.P. (2013) Sediment-induced turbidity impairs foraging performance and prey choice of planktivorous coral reef fishes. Ecological Applications, 23 (6). pp. 1504-1517.

Fulton, C.J., Binning, S.A., Wainwright, P.C., and Bellwood, D.R. (2013) Wave-induced abiotic stress shapes phenotypic diversity in a coral reef fish across a geographical cline. Coral Reefs, 32 (3). pp. 685-689.

Shaw, Emily C., Munday, Philip L., and McNeil, Ben I. (2013) The role of CO₂ variability and exposure time for biological impacts of ocean acidification. Geophysical Research Letters, 40 (17). pp. 4685-4688.

Paris, Claire B., Atema, Jelle, Irisson, Jean-Olivier, Kingsford, Michael, Gerlach, Gabriele, and Guigand, Cedric M. (2013) Reef odor: a wake up call for navigation in reef fish larvae. PLoS ONE, 8 (8). e72808. pp. 1-8.

Leduc, Antoine O.H.C., Munday, Philip L., Brown, Grant E., and Ferrari, Maud C.O, (2013) Effects of acidification on olfactory-mediated behaviour in freshwater and marine ecosystems: a synthesis. Philosophical Transactions of the Royal Society B: Biological Sciences, 368 (1627). 20120447 . pp. 1-14.

Cowman, Peter F., and Bellwood, David R. (2013) Vicariance across major marine biogeographic barriers: temporal concordance and the relative intensity of hard versus soft barriers. Proceedings of the Royal Society of London Series B, Biological Sciences, 280 (1768). 20131541. pp. 1-8.

Cutmore, Scott C., Miller, Terrence L., Curran, Stephen S., Bennett, Michael B., and Cribb, Thomas H. (2013) Phylogenetic relationships of the Gorgoderidae (Platyhelminthes: Trematoda), including the proposal of a new subfamily (Degeneriinae n. subfam.). Parasitology Research, 112 (8). pp. 3063-3074.

Loughnan, Shannon R., Domingos, Jose A., Smith-Keune, Carolyn, Forrester, Justin P., Jerry, Dean R., Beheregaray, Luciano B., and Robinson, Nicholas A. (2013) Broodstock contribution after mass spawning and size grading in barramundi (Lates calcarifer, Bloch). Aquaculture, 404-405. pp. 139-149.

Munday, Philip L., Pratchett, Morgan S., Dixson, Danielle L., Donelson, Jennifer M., Endo, Geoff G.K., Reynolds, Adam D., and Knuckey, Richard (2013) Elevated CO2 affects the behavior of an ecologically and economically important coral reef fish. Marine Biology, 160 (8). pp. 2137-2144.

Blowes, Shane A., Pratchett, Morgan S., and Connolly, Sean R. (2013) Heterospecific aggression and dominance in a guild of coral-feeding fishes: the roles of dietary ecology and phylogeny. American Naturalist, 182 (2). pp. 157-168.

Richards, Zoe T., Syms, Craig, Wallace, Carden C., Muir, Paul R., and Willis, Bette L. (2013) Multiple occupancy–abundance patterns in staghorn coral communities. Diversity and Distributions, 19 (8). pp. 884-895.

Bourne, David G., van der Zee, Marc J.J., Botté, Emmanuelle S., and Sato, Yui (2013) Sulfur-oxidizing bacterial populations within cyanobacterial dominated coral disease lesions. Environmental Microbiology Reports, 5 (4). pp. 518-524.

Miller, T.L., and Adlard, R.D. (2013) Unicapsula species (Myxosporea: Trilosporidae) of Australian marine fishes, including the description of Unicapsula andersenae n. sp. in five teleost families off Queensland, Australia. Parasitology Research, 112 (8). pp. 2945-2957.

Goopy, J.P., deNys, R., Callaghan, M., and Parker, A. (2013) Vitamin A status of heifers fed a diet deficient in Beta Carotene. In: Proceedings of the Northern Beef Research Update Conference. p. 168. From: Northern Beef Research Update Conference , 12-15 August 2013, Cairns, QLD, Australia.

Yong, R.Q-Y., Cutmore, S.C., Miller, T.L., Adlard, R.D., and Cribb, T.H. (2013) The ghost of parasites past: eggs of the blood fluke Cardicola chaetodontis (Aporocotylidae) trapped in the heart and gills of butterflyfishes (Perciformes: Chaetodontidae) of the Great Barrier Reef. Parasitology, 140 (9). pp. 1186-1194.

Feary, David A., Burt, John A., Bauman, Andrew G., Al Hazeem, Shaker, Abdel-Moati, Mohamed A., Al-Khalifa, Khalifa A., Anderson, Donald M., Amos, Carl, Baker, Andrew, Bartholomew, Aaron, Bento, Rita, Cavalcante, Geórgenes H., Chen, Chaolun Allen, Coles, Steve L., Dab, Koosha, Fowler, Ashley M., George, David, Grandcourt, Edwin, Hill, Ross, John, David M., Jones, David A., Keshavmurthy, Shashank, Mahmoud, Huda, Tapeh, Mahdi Moradi Och, Mostafavi, Pargol Ghavam, Naser, Humood, Pichon, Michel, Purkis, Sam, Riegl, Bernhard, Samimi-Namin, Kaveh, Sheppard, Charles, Samiei, Jahangir Vajed, Voolstra, Christian R., and Wiedenmann, Joerg (2013) Critical research needs for identifying future changes in Gulf coral reef ecosystems. Marine Pollution Bulletin, 72 (2). pp. 406-416.

Stephens, Evan, de Nys, Rocky, Ross, Ian L., and Hankamer, Ben (2013) Algae fuels as an alternative to petroleum. Journal of Petroleum & Environmental Biotechnology, 4 (4). 1000148. pp. 1-7.

Leahy, Susannah M., Kingsford, Michael J., and Steinberg, Craig R. (2013) Do clouds save the Great Barrier Reef? Satellite imagery elucidates the cloud-SST relationship at the local scale. PLoS ONE, 8 (7). e70400. pp. 1-12.

Wen, Colin Kuo-Chang, Chen, Kao-Song, Hsieh, Hernyi Justin, Hsu, Chia-Min, and Chen, Chaolun Allen (2013) High coral cover and subsequent high fish richness on mature breakwaters in Taiwan. Marine Pollution Bulletin, 72 (1). pp. 55-63.

Bott, Nathan J., Miller, Terrence L., and Cribb, Thomas H. (2013) Bucephalidae (Platyhelminthes: Digenea) of Plectropomus (Serranidae: Epinephelinae) in the tropical Pacific. Parasitology Research, 112 (7). pp. 2561-2584.

Hughes, Terry P., Connolly, Sean R., and Keith, Sally A. (2013) Geographic ranges of reef corals (Cnidaria: Anthozoa: Scleractinia) in the Indo-Pacific. Ecology, 94 (7). p. 1659.

Domingos, Jose A., Smith-Keune, Carolyn, Robinson, Nicholas, Loughnan, Shannon, Harrison, Paul, and Jerry, Dean R. (2013) Heritability of harvest growth traits and genotype–environment interactions in barramundi, Lates calcarifer (Bloch). Aquaculture, 402-403. pp. 66-75.

Mitchell, Matthew D., and McCormick, Mark I. (2013) Ontogenetic differences in chemical alarm cue production determine antipredator responses and learned predator recognition. Behavioural Ecology and Sociobiology, 67 (7). pp. 1123-1129.

Howells, Emily J., Willis, Bette L., Bay, Line K., and van Oppen, Madeleine J.H. (2013) Spatial and temporal genetic structure of Symbiodinium populations within a common reef-building coral on the Great Barrier Reef. Molecular Ecology, 22 (14). pp. 3693-3708.

White, James R., Meekan, Mark G., McCormick, Mark I., and Ferrari, Maud C.O. (2013) A comparison of field measures of boldness and their relationships to survival in young fish. PLoS ONE, 8 (7). e68900. pp. 1-11.

Underwood, Avril H., Taylor, Sandra, and Seymour, Jamie E. (2013) Range extension of the Cubozoan, Tripedalia binata Moore (Cnideria: Carybdeida: Carybdeidae) from far north Queensland, Australia. Memoirs of the Queensland Museum - Nature, 56 (2). pp. 607-614.

Mouritsen, Henrik, Atema, Jelle, Kingsford, Michael J., and Gerlach, Gabriele (2013) Sun compass orientation helps coral reef fish larvae return to their natal reef. PLoS ONE, 8 (6). e66039. pp. 1-16.

Galaiduk, Ronen, Figueira, Will F., Kingsford, Michael J., and Curley, Belinda G. (2013) Factors driving the biogeographic distribution of two temperate Australian damselfishes and ramifications for range shifts. Marine Ecology Progress Series, 484. pp. 189-202.

DiBattista, Joseph D., Berumen, Michael L., Gaither, Michelle R., Rocha, Luiz A., Eble, Jeff A., Choat, J. Howard, Craig, Matthew, Skillings, Derek J., and Bowen, Brian W. (2013) After continents divide: comparative phylogeography of reef fishes from the Red Sea and Indian Ocean. Journal of Biogeography, 40 (6). pp. 1170-1181.

Petersen, Elizabeth H., Jones, Clive, and Priyambodo, Bayu (2013) Bioeconomics of spiny lobster farming in Indonesia. Asian Journal of Agriculture and Development, 10 (1). pp. 25-39.

Frost, Ashley J., Thompson, Jack S., Smith, Charlotte, Burton, Hannah C., Davis, Ben, Watts, Phillip C., and Sneddon, Lynne U. (2013) Environmental change alters personality in the rainbow trout, Oncorhynchus mykiss. Animal Behaviour, 85 (6). pp. 1199-1207.

Sadovy de Mitcheson, Yvonne, Craig, Matthew T., Bertoncini, Athila A., Carpenter, Kent E., Cheung, William W.L., Choat, John H., Cornish, Andrew S., Fennessy, Sean T., Ferreira, Beatrice, Heemstra, Philip C., Liu, Min, Myers, Robert F., Pollard, David A., Rhodes, Kevin L., Rocha, Luiz A., Russell, Barry C., Samoilys, Melita A., and Sanciangco, Jonnell (2013) Fishing groupers towards extinction: a global assessment of threats and extinction risks in a billion dollar fishery. Fish and Fisheries, 14 (2). pp. 119-136.

van der Meer, Martin H., Gardner, Michael G., Berumen, Michael L., Hobbs, Jean-Paul A., and Van Herwerden, Lynne (2013) Identification of seventeen microsatellite loci for conservation genetic studies of the endemic wrasse Coris bulbifrons. Conservation Genetics Resources, 5 (2). pp. 363-366.

van der Meer, Martin H., Horne, John B., Gardner, Michael G., Hobbs, Jean-Paul A., Pratchett, Morgan, and van Herwerden, Lynne (2013) Limited contemporary gene flow and high self-replenishment drives peripheral isolation in an endemic coral reef fish. Ecology and Evolution, 3 (6). pp. 1653-1666.

Brandl, S.J., and Bellwood, D.R. (2013) Pair formation in the herbivorous rabbitfish Siganus doliatus. Journal of Fish Biology, 82 (6). pp. 2031-2044.

Brooker, Rohan M., Jones, Geoffrey P., and Munday, Philip L. (2013) Prey selectivity affects reproductive success of a corallivorous reef fish. Oecologia, 172 (2). pp. 409-416.

Graham, E.M., Baird, A.H., Connolly, S.R., Sewell, M.A., and Willis, B.L. (2013) Rapid declines in metabolism explain extended coral larval longevity. Coral Reefs, 32 (2). pp. 539-549.

Wenger, A.S., McCormick, M.I., McLeod, I.M., and Jones, G.P. (2013) Suspended sediment alters predator–prey interactions between two coral reef fishes. Coral Reefs, 32 (2). pp. 369-374.

Kramer, M.J., Bellwood, O., and Bellwood, D.R. (2013) The trophic importance of algal turfs for coral reef fishes: the crustacean link. Coral Reefs, 32 (2). pp. 575-583.

Mouillot, David, Bellwood, David R., Baraloto, Christopher, Chave, Jerome, Galzin, Rene, Harmelin-Vivien, Mireille, Kulbicki, Michel, Lavergne, Sebastien, Lavorel, Sandra, Mouquet, Nicolas, Paine, C.E. Timothy, Renaud, Julien, and Thuiller, Wilfried (2013) Rare species support vulnerable functions in high-diversity ecosystems. PLoS Biology, 11 (5). e1001569. pp. 1-11.

Lawton, Rebecca J., de Nys, Rocky, and Paul, Nicholas (2013) Selecting reliable and robust freshwater macroalgae for biomass applications. PLoS ONE, 8 (5). e64168. pp. 1-7.

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Tapiolas, Dianne M., Raina, Jean-Baptiste, Lutz, Adrian, Willis, Bette L., and Motti, Cherie A. (2013) Direct measurement of dimethylsulfoniopropionate (DMSP) in reef-building corals using quantitative nuclear magnetic resonance (qNMR) spectroscopy. Journal of Experimental Marine Biology and Ecology, 443. pp. 85-89.

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Bellwood, David R., Baird, Andrew H., Depczynski, Martial, González-Cabello, Alonso, Hoey, Andrew S., Lefevre, Carine D., and Tanner, Jennifer K. (2012) Coral recovery may not herald the return of fishes on damaged coral reefs. Oecologia, 170 (2). 1- 7.

Palmer, C. V., Graham, E., and Baird, A. H. (2012) Immunity through early development of coral larvae. Developmental and Comparative Immunology, 38 (2). 395-399.

McCormick, Mark I. (2012) Lethal effects of habitat degradation on fishes through changing competitive advantage. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1744). pp. 3899-3904.

Watson, Sue-Ann, Peck, Lloyd S., Tyler, Paul A., Southgate, Paul C., Tan, Koh Siang, Day, Robert W., and Morley, Simon A. (2012) Marine invertebrate skeleton size varies with latitude, temperature and carbonate saturation: implications for global change and ocean acidification. Global Change Biology, 18 (10). pp. 3026-3038.

Watson, Sue-Ann, Southgate, Paul C., Miller, Gabrielle M., Moorhead, Jonathan A., and Knauer, Jens (2012) Ocean acidification and warming reduce juvenile survival of the fluted giant clam, Tridacna squamosa. Molluscan Research, 32 (3). pp. 177-180.

Castine, Sarah A., Erler, Dirk V., Trott, Lindsay A., Paul, Nicholas A., De Nys, Rocky, and Eyre, Bradley D. (2012) Denitrification and anammox in tropical aquaculture settlement ponds: an isotope tracer approach for evaluating N2 production. PLoS ONE, 7 (9). e42810.

Manassa, R.P., and McCormick, M.I. (2012) Risk assessment via predator diet cues in a coral reef goby. Journal of Experimental Marine Biology and Ecology, 426-427. pp. 48-52.

de Santis, Christian, B. Gomes, Giana, and Jerry, Dean R. (2012) Abundance of myostatin gene transcripts and their correlation with muscle hypertrophy during the development of barramundi, Lates calcarifer. Comparative Biochemistry and Physiology-Part B: biochemistry & molecular biology, 163 (1). pp. 101-107.

Boaden, A.E., and Kingsford, M.J. (2012) Diel behaviour and trophic ecology of Scolopsis bilineatus (Nemipteridae). Coral Reefs, 31 (3). pp. 871-883.

Figueiredo, Joana, and Connolly, Sean R. (2012) Dispersal-mediated coexistence under recruitment limitation and displacement competition. Ecological Modelling, 243. pp. 133-142.

Palmer, C.V., Bythell, J.C., and Willis, B.L. (2012) Enzyme activity demonstrates multiple pathways of innate immunity in Indo-Pacific anthozoans. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1743). pp. 3879-3887.

Feeney, W.E., Lönnstedt, O.M., Bosiger, Y., Martin, J., Jones, G.P., Rowe, R.J., and McCormick, M.I. (2012) High rate of prey consumption in a small predatory fish on coral reefs. Coral Reefs, 31 (3). pp. 909-918.

Pratchett, Morgan S., Coker, Darren J., Jones, Geoffrey P., and Munday, Philip L. (2012) Specialization in habitat use by coral reef damselfishes and their susceptibility to habitat loss. Ecology and Evolution, 2 (9). pp. 2168-2180.

Berkstrom, Charlotte, Jones, Geoffrey P., McCormick, Mark I., and Srinivasan, Maya (2012) Ecological versatility and its importance for the distribution and abundance of coral reef wrasses. Marine Ecology Progress Series, 461. pp. 151-163.

Sheaves, Marcus (2012) Ecosystem equivalence and the ability to generalise: insights from global consistencies in mangrove fish assemblages. Marine Ecology Progress Series, 461. pp. 137-149.

Kelly, Jenny, Saggers, Sherry, Taylor, Kylie, Pearce , Glenn, Massey, Peter, Bull, Jennifer, Odo, Travis, Thomas, John, Billycan, Rosita, Judd, Jenni, Reilly, Susan, and Ahboo, Shayne (2012) "Makes you proud to be black eh?": Reflections on meaningful Indigenous research participation. International Journal for Equity in Health, 11 (40). pp. 1-15.

de Paula Silva, Pedro H., De Nys, Rocky, and Paul, Nicholas A. (2012) Seasonal growth dynamics and resilience of the green tide alga Cladophora coelothrix in high-nutrient tropical aquaculture. Aquaculture Environment Interactions , 2 (3). pp. 253-266.

Macintosh, Hugh, De Nys, Rocky, and Whalan, Stephen (2012) Shipworms as a model for competition and coexistence in specialized habitats. Marine Ecology Progress Series, 461. pp. 95-105.

Knip, Danielle M., Heupel, Michelle R., and Simpfendorfer, Colin A. (2012) Mortality rates for two shark species occupying a shared coastal environment. Fisheries Research, 125-126. pp. 184-189.

Moore, Bradley R., Simpfendorfer, Colin A., Newman, Stephen J., Stapley, Jason M., Allsop, Quentin, Sellin, Michelle J., and Welch, David J. (2012) Spatial variation in life history reveals insight into connectivity and geographic population structure of a tropical estuarine teleost: king threadfin, Polydactylus macrochir. Fisheries Research, 125-126. pp. 214-224.

Chong-Seng, Karen M., Mannering, Thomas D., Pratchett, Morgan S., Bellwood, David R., and Graham, Nicholas A.J. (2012) The influence of coral reef benthic condition on associated fish assemblages. PLoS ONE, 7 (8). e42167. pp. 1-10.

Kingsford, M.J., Seymour, J.E., and O'Callaghan, M.D. (2012) Abundance patterns of cubozoans on and near the Great Barrier Reef. Hydrobiologia, 690 (1). pp. 257-268.

Olsen, Esben Moland, Heupel, Michelle R., Simpfendorfer, Colin A., and Moland, Even (2012) Harvest selection on Atlantic cod behavioral traits: implications for spatial management. Ecology and Evolution, 2 (7). pp. 1549-1562.

Dixson, Danielle L., Pratchett, Morgan S., and Munday, Philip L. (2012) Reef fishes innately distinguish predators based on olfactory cues associated with recent prey items rather than individual species. Animal Behaviour, 84 (1). pp. 45-51.

Camus, Thomas, and Zeng, Chaoshu (2012) Reproductive performance, survival and development of nauplii and copepodites, sex ratio and adult life expectancy of the harpacticoid copepod, Euterpina acutifrons, fed different microalgal diets. Aquaculture Research, 43 (8). pp. 1159-1169.

Manassa, R.P., and McCormick, M.I. (2012) Social learning and acquired recognition of a predator by a marine fish. Animal Cognition, 15 (4). pp. 559-565.

Mooney, C. J., and Kingsford, M. J. (2012) Sources and movements of Chironex fleckeri medusae using statolith elemental chemistry. Hydrobiologia, 690 (1). pp. 269-277.

Templeman, Michelle A., and Kingsford, Michael J. (2012) Variation in soft tissue chemistry among scyphozoan and cubozoan jellyfishes from the Great Barrier Reef, Australia. Hydrobiologia, 690 (1). pp. 279-290.

Newton, J.R., De Santis, C., and Jerry, D.R. (2012) The gene expression response of the catadromous perciform barramundi Lates calcarifer to an acute heat stress. Journal of Fish Biology, 81 (1). pp. 81-93.

Nash, Kirsty L., Graham, Nicholas A.J., Januchowski-Hartley, Fraser A., and Bellwood, David R. (2012) Influence of habitat condition and competition on foraging behaviour of parrotfishes. Marine Ecology Progress Series, 457. pp. 113-124.

Noonan, Sam H.C., Jones, Geoffrey P., and Pratchett, Morgan S. (2012) Coral size, health and structural complexity: effects on the ecology of a coral reef damselfish. Marine Ecology Progress Series, 456. pp. 127-137.

Harrison, Hugo B., Williamson, David H., Evans, Richard D., Almany, Glenn R., Thorrold, Simon R., Russ, Garry R., Feldheim, Kevin A., van Herwerden, Lynne, Planes, Serge, Srinivasan, Maya, Berumen, Michael L., and Jones, Geoffrey P. (2012) Larval export from marine reserves and the recruitment benefit for fish and fisheries. Current Biology, 22 (11). pp. 1023-1028.

Ferrari, Maud C.O., McCormick, Mark I., Munday, Philip L., Meekan, Mark G., Dixson, Danielle L., Lönnstedt, Oona, and Chivers, Douglas P. (2012) Effects of ocean acidification on visual risk assessment in coral reef fishes. Functional Ecology, 26 (3). pp. 553-558.

Lönnstedt, Oona M., McCormick, Mark I., Meekan, Mark G., Ferrari, Maud C.O., and Chivers, Douglas P. (2012) Learn and live: predator experience and feeding history determines prey behaviour and survival. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1736). pp. 2091-2098.

Whitney, Nicholas M., Robbins, William D., Schultz, Jennifer K., Bowen, Brian W., and Holland, Kim N. (2012) Oceanic dispersal in a sedentary reef shark (Triaenodon obesus): genetic evidence for extensive connectivity without a pelagic larval stage. Journal of Biogeography, 39 (6). pp. 1144-1156.

Milione, Michael, and Southgate, Paul C. (2012) Reproductive cycle of the winged pearl oyster, Pteria penguin (Röding 1793) (Pteriidae) in north-eastern Australia. Invertebrate Reproduction and Development, 56 (2). pp. 164-171.

Ballagh, Aaron C., Welch, David J., Newman, Stephen J., Allsop, Quentin, and Stapley, Jason M. (2012) Stock structure of the blue threadfin (Eleutheronema tetradactylum) across northern Australia derived from life-history characteristics. Fisheries Research, 121-122. pp. 63-72.

Buston, Peter M., Jones, Geoffrey P., Planes, Serge, and Thorrold, Simon R. (2012) Probability of successful larval dispersal declines fivefold over 1 km in a coral reef fish. Proceedings of the Royal Society of London B: Biological Sciences, 279 (1735). pp. 1883-1888.

Luter, Heidi M., Whalan, Stephen, and Webster, Nicole S. (2012) The marine sponge Ianthella basta can recover from stress-induced tissue regression. Hydrobiologia, 687 (1). pp. 227-235.

Domingos, J.A., Fromm, P., Smith-Keune, C., and Jerry, D.R. (2012) A robust flow-cytometric protocol for assessing growth rate of hatchery-reared barramundi Lates calcarifer larvae. Journal of Fish Biology, 80 (6). pp. 2253-2266.

Hughes, Terry P., Baird, Andrew H., Dinsdale, Elizabeth A., Moltschaniwskyj, Natalie A., Pratchett, Morgan S., Tanner, Jason E., and Willis, Bette L. (2012) Assembly rules of reef corals are flexible along a steep climatic gradient. Current Biology, 22 (8). pp. 736-741.

Andutta, Fernando P., Kingsford, Michael J., and Wolanski, Eric (2012) 'Sticky water' enables the retention of larvae in a reef mosaic. Estuarine, Coastal and Shelf Science , 101. pp. 54-63.

Simpfendorfer, Colin A., and Heupel, Michelle R. (2012) Assessing habitat use and movement. In: Carrier, Jeffrey C., Musick, John A., and Heithaus, Michael R., (eds.) Biology of Sharks and Their Relatives. CRC Marine Biology Series . CRC Press, London, UK, pp. 579-601.

Morgan, Jess A.T., Harry, Alastair V., Welch, David J., Street, Raewyn, White, Jimmy, Geraghty, Pascal T., Macbeth, William G., Tobin, Andrew, Simpfendorfer, Colin A., and Ovenden, Jennifer R. (2012) Detection of interspecies hybridisation in Chondrichthyes: hybrids and hybrid offspring between Australian (Carcharhinus tilstoni) and common (C. limbatus) blacktip shark found in an Australian fishery. Conservation Genetics, 13 (2). pp. 455-463.

Thibaut, Loïc M., Connolly, Sean R., and Sweatman, Hugh P.A. (2012) Diversity and stability of herbivorous fishes on coral reefs. Ecology, 93 (4). pp. 891-901.

Knip, Danielle M., Heupel, Michelle R., and Simpfendorfer, Colin A. (2012) Evaluating marine protected areas for the conservation of tropical coastal sharks. Biological Conservation, 148 (1). pp. 200-209.

Tziouveli, V., Hall, M., and Smith, G.G. (2012) Evaluation of lipid-enriched Artemia on the reproductive performance of the white-striped cleaner shrimp, Lysmata amboinensis. Aquaculture International, 20 (2). pp. 201-211.

Jerry, Dean R., Kvingedal, Renate, Lind, Curtis E., Evans, Brad S., Taylor, Joseph J.U., and Safari, Alex E. (2012) Donor-oyster derived heritability estimates and the effect of genotype × environment interaction on the production of pearl quality traits in the silver-lip pearl oyster, Pinctada maxima. Aquaculture, 338-341. pp. 66-71.

Vucko, M.V., King, P.C., Poole, A.J., Carl, C., Jahedi, M.Z., and de Nys, R. (2012) Cold spray metal embedment: an innovative antifouling technology. Biofouling, 28 (3). pp. 239-248.

Coker, Darren J., Pratchett, Morgan S., and Munday, Philip L. (2012) Influence of coral bleaching, coral mortality and conspecific aggression on movement and distribution of coral-dwelling fish. Journal of Experimental Marine Biology and Ecology, 414-415. pp. 62-68.

Horne, John B., Momigliano, Paolo, Welch, David J., Newman, Stephen J., and Van Herwerden, Lynne (2012) Searching for common threads in threadfins: phylogeography of Australian polynemids in space and time. Marine Ecology Progress Series, 449. pp. 263-276.

Berumen, M.L., Trip, E.D.L., Pratchett, M.S., and Choat, J.H. (2012) Differences in demographic traits of four butterflyfish species between two reefs of the Great Barrier Reef separated by 1,200 km. Coral Reefs, 31 (1). pp. 169-177.

Romano, Nicholas, and Zeng, Chaoshu (2012) Osmoregulation in decapod crustaceans: implications to aquaculture productivity, methods for potential improvement and interactions with elevated ammonia exposure. Aquaculture, 334-337. pp. 12-23.

Claydon, J.A.B., McCormick, M.I., and Jones, G.P. (2012) Patterns of migration between feeding and spawning sites in a coral reef surgeonfish. Coral Reefs, 31 (1). pp. 77-87.

Dixson, D.L. (2012) Predation risk assessment by larval reef fishes during settlement-site selection. Coral Reefs, 31 (1). pp. 255-261.

Bonaldo, R.M., Welsh, J.Q., and Bellwood, D.R. (2012) Spatial and temporal variation in coral predation by parrotfishes on the GBR: evidence from an inshore reef. Coral Reefs, 31 (1). pp. 263-272.

McGinty, E.L., Zenger, K.R., Jones, D.B., and Jerry, D.R. (2012) Transcriptome analysis of biomineralisation-related genes within the pearl sac: host and donor oyster contribution. Marine Genomics, 5. pp. 27-33.

Lönnstedt, Oona M., McCormick, Mark I., and Chivers, Douglas P. (2012) Well-informed foraging: damage-released chemical cues of injured prey signal quality and size to predators. Oecologia, 168 (3). pp. 651-658.

Connolly, Sean R., and Thibaut, Loic M. (2012) A comparative analysis of alternative approaches to fitting species-abundance models. Journal of Plant Ecology, 5 (1). pp. 32-45.

Tziouveli, Vasiliki, and Smith, Greg G. (2012) A comparison of the fatty acid profiles of adult tissues, and newly hatched, fed and starved Lysmata amboinensis larvae. Aquaculture Research, 43 (4). pp. 577-587.

Domenici, Paolo, Allan, Bridie, McCormick, Mark I., and Munday, Philip L. (2012) Elevated carbon dioxide affects behavioural lateralization in a coral reef fish. Biology Letters, 8 (1). pp. 78-81.

Puill-Stephan, E., van Oppen, M.J.H., Pichavant-Rafini, K., and Willis, B.L. (2012) High potential for formation and persistence of chimeras following aggregated larval settlement in the broadcast spawning coral, Acropora millepora. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1729). pp. 699-708.

Mata, Leonardo, Gaspar, Helena, and Santos, Rui (2012) Carbon/nutrient balance in relation to biomass production and halogenated compound content in the red alga Asparagopsis taxiformis (Bonnemaisoniaceae). Journal of Phycology, 48 (1). pp. 248-253.

Athauda, Saman, Anderson, Trevor, and de Nys, Rocky (2012) Effect of rearing water temperature on protandrous sex inversion in cultured Asian Seabass (Lates calcarifer). General and Comparative Endocrinology, 175 (3). pp. 416-423.

Ferrari, Maud C.O., Manassa, Rachel P., Dixson, Danielle L., Munday, Philip L., McCormick, Mark I., Meekan, Mark G., Sih, Andrew, and Chivers, Douglas P. (2012) Effects of ocean acidification on learning in coral reef fishes. PLoS ONE, 7 (2). e31478. pp. 1-10.

Wu, Xugan, Smith, Greg, and Hall, Michael (2012) Patterns of larval growth, lipid composition and fatty acid deposition during early to mid stages of development in Panulirus ornatus phyllosoma. Aquaculture, 330-333. pp. 63-73.

Montanari, Stefano, Van Herwerden, Lynne, Pratchett, Morgan, Hobbs, Jean-Paul, and Fugedi, Anneli (2012) Reef fish hybridization: lessons learnt from butterflyfishes (genus Chaetodon). Ecology and Evolution, 2 (2). pp. 310-328.

Abdul Wahab, M.A., de Nys, R., and Whalan, S. (2012) Closing the lifecycle for the sustainable aquaculture of the bath sponge Coscinoderma matthewsi. Aquaculture, 324-325. pp. 281-289.

Bannister, R.J., Battershill, C.N., and de Nys, R. (2012) Suspended sediment grain size and mineralogy across the continental shelf of the Great Barrier Reef: impacts on the physiology of a coral reef sponge. Continental Shelf Research, 32. pp. 86-95.

Bird, Michael I., Wurster, Christopher M., de Paula Silva, Pedro H., Paul, Nicholas A., and de Nys, Rocky (2012) Algal biochar: effects and applications. GCB Bioenergy, 4 (1). pp. 61-69.

Hobbs, Jean-Paul A., Jones, Geoffrey P., Munday, Philip L., Connolly, Sean R., and Srinivasan, Maya (2012) Biogeography and the structure of coral reef fish communities on isolated islands. Journal of Biogeography, 39 (1). pp. 130-139.

Devine, Brynn M., Munday, Philip L., and Jones, Geoffrey P. (2012) Homing ability of adult cardinalfish is affected by elevated carbon dioxide. Oecologia, 168 (1). pp. 269-276.

Pisapia, C., Hennige, S.J., Haapkylä, J., Matteucci, R., and Smith, D.J. (2012) Morphological changes in polyp structure of massive coral species in clear and turbid waters. Bulletin of Marine Science, 88 (1). pp. 183-191.

Blowes, Shane A., and Connolly, Sean R. (2012) Risk spreading, connectivity, and optimal reserve spacing. Ecological Applications, 22 (1). pp. 311-321.

Beeden, Roger, Maynard, Jeffrey A., Marshall, Paul A., Heron, Scott F., and Willis, Bette L. (2012) A framework for responding to coral disease outbreaks that facilitates adaptive management. Environmental Management, 49 (1). pp. 1-13.

Barnes, Lachlan, Bellwood, David R., Sheaves, Marcus, and Tanner, Jennifer K. (2012) The use of clear-water non-estuarine mangroves by reef fishes on the Great Barrier Reef. Marine Biology, 159 (1). pp. 211-220.

Hair, Cathy A., Pickering, Timothy D., and Mills, David J. (2012) Asia-Pacific Tropical Sea Cucumber Aquaculture: proceedings of an International Symposium held in Noumea, New Caledonia, 15-17 February, 2011. In: ACIAR Proceedings (136) pp. 1-209. From: Asia–Pacific Tropical Sea Cucumber Aquaculture, 15-17 February 2011, Noumea, New Caledonia.

Bellwood, David R., Renema, Willem, and Rosen, Brian R. (2012) Biodiversity hotspots, evolution and coral reef biogeography: a review. In: Gower, David J., Johnson, Kenneth G., Richardson, James E., Rosen, Brian R., Rüber, Lukas, and Williams, Suzanne T., (eds.) Biotic Evolution and Environmental Change in Southeast Asia. The Systematics Association Special Volume Series, 82 . Cambridge University Press, New York, USA, pp. 216-245.

Glas, Martin S., Sato, Yui, Ulstrup, Karin E., and Bourne, David G. (2012) Biogeochemical conditions determine virulence of black band disease in corals. ISME Journal: multidisciplinary journal of microbial ecology, 6 (8). pp. 1526-1534.

Hamilton, R.J., and Choat, J.H. (2012) Bumphead Parrotfish: Bolbometopon muricatum. In: Sadovy de Mitcheson, Yvonne, and Colin, Patrick L., (eds.) Reef Fish Spawning Aggregations: biology, research and management. Fish and Fisheries Series, 35 . Springer, Dordrecht, Netherlands, pp. 490-496.

Madin, Joshua S., Hughes, Terry P., and Connolly, Sean R. (2012) Calcification, storm damage and population resilience of tabular corals under climate change. PLoS ONE, 7 (10). e46637. pp. 1-10.

Mitchell, Matthew D., Cowman, Peter F., and McCormick, Mark I. (2012) Chemical alarm cues are conserved within the coral reef fish family Pomacentridae. PLoS ONE, 7 (10). pp. 1-7.

Donelson, J.M., Munday, P.L., and McCormick, M.I. (2012) Climate change may affect fish through an interaction of parental and juvenile environments. Coral Reefs, 31 (3). pp. 753-762.

Harry, A.V., Morgan, J.A.T., Ovenden, J.R., Tobin, A.J., Welch, D.J., and Simpfendorfer, C.A. (2012) Comparison of the reproductive ecology of two sympatric blacktip sharks (Carcharhinus limbatus and Carcharhinus tilstoni) off north-eastern Australia with species identification inferred from vertebral counts. Journal of Fish Biology, 81 (4). pp. 1-9.

Busilacchi, S., Williams, A.J., Russ, G.R., and Begg, G.A. (2012) Complexity of applying minimum legal sizes (MLS) of retention in an indigenous coral reef fishery. Fisheries Management and Ecology.

Messmer, Vanessa, Jones, Geoffrey, Munday, Philip, and Planes, Serge (2012) Concordance between genetic and species diversity in coral reef fishes across the pacific ocean biodiversity gradient. Evolution, 66 (12). pp. 3902-3917.

Whalan, Steve, Webster, Nicole S., and Negri, Andrew P. (2012) Crustose coralline algae and a cnidarian neuropeptide trigger larval settlement in two coral reef sponges. PLoS ONE, 7 (1). e30386. pp. 1-8.

Andreakis, Nikos, Luter, Heidi M., and Webster, Nicole S. (2012) Cryptic speciation and phylogeographic relationships in the elephant ear sponge Ianthella basta (Porifera, Ianthellidae) from northern Australia. Zoological Journal of the Linnean Society, 166 (2). pp. 225-235.

Kramer, M.J., Bellwood, D.R., and Bellwood, O. (2012) Cryptofauna of the epilithic algal matrix on an inshore coral reef, Great Barrier Reef. Coral Reefs, 31 (4). pp. 1007-1015.

Heron, Scott F., Maynard, Jeffrey, Willis, Bette, Christensen, Tyler, Harvell, C Drew, Vargas-Angel, Bernardo, Beeden, Roger, Sziklay, Jamie, Aeby, Greta, Franklin, Eric C., Skirving, William, Eakin, C. Mark, Burgess, Tim, Li, Jianke, Liu, Gang, Lucas, Ethan, Rauenzahn, Jackqueline, and Strong, Al (2012) Developments in understanding relationships between environmental conditions and coral disease. In: Proceedings of the 12th International Coral Reef Symposium. 16B_4. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Botté, E.S., Jerry, D.R., King, S. Codi, Smith-Keune, C., and Negri, A.P. (2012) Effects of chlorpyrifos on cholinesterase activity and stress markers in the tropical reef fish Acanthochromis polyacanthus. Marine Pollution Bulletin, 65 (4-9). pp. 384-393.

Yang, Xiaozhen, Wang, Jinfeng, Zhao, Liulan, Fan, Peng, Wu, Xugan, Cheng, Yongxu, and Zeng, Chaoshu (2012) Effects of elevated ambient histamine level on survival, growth, sexual maturity and tissue histamine accumulation of the mysis Neomysis awatschensis and Neomysis japonica Nakazawa. Aquaculture International, 20. pp. 347-356.

Chan, Neil C. S., Connolly, Sean R., and Mapstone, Bruce D. (2012) Effects of sex change on the implications of marine reserves for fisheries. Ecological Applications, 22 (3). pp. 778-791.

Frisch, Ashley J., Cole, Andrew J., Hobbs, Jean-Paul A., Rizzari, Justin R., and Munkres, Katherine P. (2012) Effects of spearfishing on reef fish populations in a multi-use conservation area. PLoS ONE, 7 (12). e51938. pp. 1-11.

Wassnig, Matthew, and Southgate, Paul C. (2012) Embryonic and larval development of Pteria penguin (Röding, 1798) (Bivalvia: Pteriidae). Journal of Molluscan Studies, 78 (1). pp. 134-141.

Leuzinger, Sebastian, Willis, Bette L., and Anthony, Kenneth R.N. (2012) Energy allocation in a reef coral under varying resource availability. Marine Biology: international journal on life in oceans and coastal waters, 159 (1). pp. 177-186.

Carl, C., Poole, A.J., Sexton, B.A., Glenn, F.L., Vucko, M.J., Williams, M.R., Whalan, S., and de Nys, R. (2012) Enhancing the settlement and attachment strength of pediveligers of Mytilus galloprovincialis by changing surface wettability and microtopography. Biofouling, 28 (2). pp. 175-186.

Stella, Jessica (2012) Evidence of corallivory by the keyhole limpet Diodora galeata. Coral Reefs, 31 (2). p. 579.

Sweet, Michael, Kirkham, Nigel, Bendall, Mark, Currey, Leanne, Bythell, John, and Heupel, Michelle (2012) Evidence of melanoma in wild marine fish populations. PLoS One, 7 (8). e41989. e41989.

Edmunds, Richard C., Smith-Keune, Carolyn, Van Herwerden, Lynne, Fulton, Chris J., and Jerry, Dean R. (2012) Exposing local adaptation: synergistic stressors elicit population-specific lactate dehydrogenase-B (ldh-b) expression profiles in Australian barramundi, Lates calcarifer. Aquatic Sciences, 74 (1). pp. 171-178.

Puill-Stephan, Eneour, Seneca, François O., Miller, David J., van Oppen, Madeleine J.H., and Willis, Bette L. (2012) Expression of putative immune response genes during early ontogeny in the coral Acropora millepora. PLoS ONE, 7 (7). e39099. pp. 1-5.

Devlin, Michelle, Wenger, Amelia, Da Silva, Eduardo, Alvarez Romero, Jorge G., Waterhouse, Jane, and McKenzie, Len (2012) Extreme weather conditions in the Great Barrier Reef: drivers of change? In: Proceedings of the 12th International Coral Reef Symposium. 21A_1. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

McLeod, Ian M., Parsons, Darren M., Morrison, Mark A., Le Port, Agnès, and Taylor, Richard B. (2012) Factors affecting the recovery of soft-sediment mussel reefs in the Firth of Thames, New Zealand. Marine and Freshwater Research, 63 (1). pp. 78-83.

Angell, Alex R., Pirozzi, Igor, de Nys, Rocky, and Paul, Nicholas A. (2012) Feeding preferences and the nutritional value of tropical algae for the abalone Haliotis asinina. PLoS ONE, 7 (6). e388547. pp. 1-10.

Sheaves, Marcus, Johnston, Ross, and Connolly, Rod M. (2012) Fish assemblages as indicators of estuary ecosystem health. Wetlands Ecology and Management, 20 (6). pp. 477-490.

Young, M.A.L., and Bellwood, D.R. (2012) Fish predation on sea urchins on the Great Barrier Reef. Coral Reefs, 31 (3). pp. 731-738.

Barbosa, Miguel, Connolly, Sean R., Hisano, Mizue, Dornelas, Maria, and Magurran, Anne E. (2012) Fitness consequences of female multiple mating: a direct test of indirect benefits. BMC Evolutionary Biology, 12. 185. pp. 1-11.

Connolly, S.R., Lopez-Yglesias, M.A., and Anthony, K.R.N. (2012) Food availability promotes rapid recovery from thermal stress in a scleractinian coral. Coral Reefs, 31 (4). pp. 951-960.

van der Meer, Martin, Hobbs, Jean-Paul, Jones, Geoffrey, and Van Herwerden, Lynne (2012) Genetic Connectivity among and self-replenishment within island populations of a restricted range subtropical reef fish. PLoS ONE, 7 (11). e49660. pp. 1-11.

Ruiz-Morenol, Diego, Willis, Bette L., Page, A. Cathie, Weil, Ernesto, Cróquer, Aldo, Vargas-Angel, Bernardo, Jordan-Garza, Adán Guillermo, Jordán-Dahlgren, Eric, Raymundo, Laurie, and Harvell, C. Drew (2012) Global coral disease prevalence associated with sea temperature anomalies and local factors. Diseases of Aquatic Organisms, 100 (3). pp. 249-261.

Milione, Michael, and Southgate, Paul (2012) Growth of the winged pearl oyster, Pteria penguin, at dissimilar sites in northeastern Australia. Journal of Shellfish Research, 31 (1). pp. 13-20.

Briffa, Mark, de la Haye, Kate, and Munday, Philip L. (2012) High CO2 and marine animal behaviour: potential mechanisms and ecological consequences. Marine Pollution Bulletin, 64 (8). pp. 1519-1528.

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Lamb, Joleah B., and Willis, Bette L. (2011) Using coral disease prevalence to assess the effects of concentrating tourism activities on offshore reefs in a tropical marine park. Conservation Biology, 25 (5). pp. 1044-1052.

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Cetina-Heredia, Paulina, and Connolly, Sean R. (2011) A simple approximation for larval retention around reefs. Coral Reefs, 30 (3). pp. 593-605.

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Wang, Chenwei, Deakin, Janine E., Rens, Willem, Zenger, Kyall R., Belov, Katherine, Marshall Graves, Jennifer A., and Nicholas, Frank W. (2011) A first-generation integrated tammar wallaby map and its use in creating a tammar wallaby first-generation virtual genome map. BMC Genomics, 12. 422. pp. 1-12.

Wang, Chenwei, Webley, Lee, Wei, Ke-jun, Wakefield, Matthew J., Patel, Hardip R., Deakin, Janine E., Alsop, Amber, Marshall Graves, Jennifer A., Cooper, Desmond W., Nicholas, Frank W., and Zenger, Kyall R. (2011) A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii). BMC Genetics, 12. 72. pp. 1-16.

De Santis, Christian, Wade, Nicholas M., Jerry, Dean R., Preston, Nigel P., Glencross, Brett D., and Sellars, Melony J. (2011) Growing backwards: an inverted role for the shrimp ortholog of vertebrate myostatin and GDF11. Journal of Experimental Biology, 214 (16). pp. 2671-2677.

Lönnstedt, Oona M., and McCormick, Mark I. (2011) Chemical alarm cues inform prey of predation threat: the importance of ontogeny and concentration in a coral reef fish. Animal Behaviour, 82 (2). pp. 213-218.

Moorhead, Jonathan A., and Zeng, Chaoshu (2011) Breeding of the forktail blenny Meiacanthus atrodorsalis: broodstock management and larval rearing. Aquaculture, 318 (1-2). pp. 248-252.

Romano, Nicholas, and Zeng, Chaoshu (2011) Importance of balanced Na+/K+ ratios for blue swimmer crabs, Portunus pelagicus, to cope with elevated ammonia-N and differences between in vitro and in vivo gill Na+/K+-ATPase responses. Aquaculture, 318 (1-2). pp. 154-161.

Ovenden, Jennifer R., Morgan, Jess A.T., Street, Raewyn, Tobin, Andrew, Simpfendorfer, Colin, Macbeth, William, and Welch, David (2011) Negligible evidence for regional genetic population structure for two shark species Rhizoprionodon acutus (Rüppell, 1837) and Sphyrna lewini (Griffith & Smith, 1834) with contrasting biology. Marine Biology, 158 (7). pp. 1497-1509.

Cripps, Ingrid, Munday, Philip L., and McCormick, Mark I. (2011) Ocean acidification affects prey detection by a predatory reef fish. PLoS One, 6 (7). e22736. pp. 1-7.

Todd, Erica, Blair, David, Hamann, Mark, and Jerry, Dean (2011) Twenty-nine microsatellite markers for two Australian freshwater turtles, Elseya albagula and Emydura macquarii krefftii: development from 454-sequence data and utility in related taxa. Conservation Genetics Resources, 3 (3). pp. 449-456.

Beukers-Stewart, B.D., Beukers-Stewart, J.S, and Jones, G.P. (2011) Behavioural and developmental responses of predatory coral reef fish to variation in the abundance of prey. Coral Reefs, 30 (3). pp. 855-864.

Leis, Jeffrey M., Van Herwerden, Lynne, and Patterson, Heather (2011) Estimating connectivity in marine fish populations: what works best? In: Gibson, R.N., Atkinson, R.J.A., and Gordon, J.D.M., (eds.) Oceanography and Marine Biology: An Annual Review. Oceanography and Marine Biology: An Annual Review, 49 . CRC Press, Boca Raton, FL, USA, pp. 193-234.

Stella, Jessica S., Pratchett, Morgan S., Hutchings, Pat A., and Jones, Geoffrey P. (2011) Coral-associated invertebrates: diversity, ecology importance and vulnerability to disturbance. Oceanography and Marine Biology: an annual review, 49. pp. 43-104.

McGinty, Erin L., Zenger, Kyall R., Taylor, Joseph U.U., Evans, Brad S., and Jerry, Dean R. (2011) Diagnostic genetic markers unravel the interplay between host and donor oyster contribution in cultured pearl formation. Aquaculture, 316 (1-4). pp. 20-24.

Bellwood, D.R., and Choat, J.H. (2011) Dangerous demographics: the lack of juvenile humphead parrotfishes Bolbometopon muricatum on the Great Barrier Reef. Coral Reefs, 30 (2). pp. 549-554.

Harry, Alastair V., Tobin, Andrew J., Simpfendorfer, Colin A., Welch, David J., Mapleston, Amos, White, Jimmy, Williams, Ashley J., and Stapley, Jason (2011) Evaluating catch and mitigating risk in a multispecies, tropical, inshore shark fishery within the Great Barrier Reef World Heritage Area. Marine and Freshwater Research, 62 (6). pp. 710-721.

Grutter, Alexandra S., Crean, Angela J., Curtis, Lynda M., Kuris, Armand M., Warner, Robert R., and McCormick, Mark I. (2011) Indirect effects of an ectoparasite reduce successful establishment of a damselfish at settlement. Functional Ecology, 25 (3). pp. 586-594.

Abdul Wahab, M.A., De Nys, R., and Whalan, S. (2011) Larval behaviour and settlement cues of a brooding coral reef sponge. Coral Reefs, 30 (2). pp. 451-460.

Horne, John B., Momigliano, Paolo, Welch, David J., Newman, Stephen J., and van Herwerden, Lynne (2011) Limited ecological population connectivity suggests low demands on self-recruitment in a tropical inshore marine fish (Eleutheronema tetradactylum: Polynemidae). Molecular Ecology, 20 (11). pp. 2291-2306.

Ceccarelli, Daniela, Beger, Maria, Kospartov, Marie, Richards, Zoe, and Birrell, Chico (2011) Population trends of remote invertebrate resources in a marine reserve: trochus and holothurians at Ashmore Reef. Pacific Conservation Biology, 17 (2). pp. 132-140.

Karlson, Ronald H., Connolly, Sean R., and Hughes, Terence P. (2011) Spatial variance in abundance and occupancy of corals across broad geographic scales. Ecology, 92 (6). pp. 1282-1291.

Bonaldo, R.M., and Bellwood, D.R. (2011) Spatial variation in the effects of grazing on epilithic algal turfs on the Great Barrier Reef, Australia. Coral Reefs, 30 (2). pp. 381-390.

Fraser, M.R., and de Nys, R. (2011) A quantitative determination of deformities in barramundi (Lates calcarifer; Bloch) fed a vitamin deficient diet. Aquaculture Nutrition, 17 (3). pp. 235-243.

Beattie, Andrew J., Hay, Mark, Magnusson, Bill, de Nys, Rocky, Smeathers, James, and Vincent, Julian F.V. (2011) Ecology and bioprospecting. Austral Ecology, 36 (3). pp. 341-356.

Barnett, Adam, Abrantes, Kátya G., Stevens, John D., and Semmens, Jayson M. (2011) Site fidelity and sex-specific migration in a mobile apex predator: implications for conservation and ecosystem dynamics. Animal Behaviour, 81 (5). pp. 1039-1048.

Miller, David A., Choat, John Howard, Clements, Kendall D., and Angert, Esther R. (2011) The spoIIE homolog of Epulopiscium sp. type B is expressed early in intracellular offspring development. Journal of Bacteriology, 193 (10). pp. 2642-2646.

Donelson, Jennifer M., Munday, Philip, Mccormick, Mark I., and Nilsson, Göran E. (2011) Acclimation to predicted ocean warming through developmental plasticity in a tropical reef fish. Global Change Biology, 17 (4). pp. 1712-1719.

Webster, Nicole S., Cobb, Rose E., Soo, Rochelle, Anthony, Shelley L., Battershill, Christopher N., Whalan, Stephen, and Evans-Illidge, Elizabeth (2011) Bacterial community dynamics in the marine sponge Rhopaloeides odorabile under in situ and ex situ cultivation. Marine Biotechnology, 13 (2). pp. 296-304.

Le Vay, Lewis, Shelley, Colin, Zeng, Chaoshu, and Sorgeloos, Patrick (2011) International symposium on aquaculture, biology and management of commercially important crabs, Shanghai (China), 8–11 November 2009 (ISABMC-2009). Aquaculture International, 19 (2). pp. 215-216.

De Santis, Christian, Smith-Keune, Carolyn, and Jerry, Dean R. (2011) Normalizing RT-qPCR data: are we getting the right answers? An appraisal of normalization approaches and internal reference genes from a case study in the Finfish Lates calcarifer. Marine Biotechnology, 13 (2). pp. 170-180.

Dickens, Luke C., Goatley, Christopher H.R., Tanner, Jennifer K., and Bellwood, David R. (2011) Quantifying relative diver effects in underwater visual censuses. PLoS One, 6 (4). e18965. pp. 1-8.

De Santis, C., and Jerry, D.R. (2011) Differential tissue-regulation of myostatin genes in the teleost fish Lates calcarifer in response to fasting. Evidence for functional differentiation. Molecular and Cellular Endocrinology, 335 (2). 158-165 .

Bennett, S., and Bellwood, D.R. (2011) Latitudinal variation in macroalgal consumption by fishes on the Great Barrier Reef. Marine Ecology Progress Series, 426. pp. 241-252.

Ceccarelli, D.M., Jones, G.P, and McCook, L.J. (2011) Interactions between herbivorous fish guilds and their influence on algal succession on a coastal coral reef. Journal of Experimental Marine Biology and Ecology, 399 (1). pp. 60-67.

Kingsford, Michael, Smith, Felicity, and Flood, M.J. (2011) Growth and pelagic larval duration of presettlement and newly settled neon damselfish, Pomacentrus coelestis, at multiple spatial scales. Coral Reefs, 30 (1). pp. 203-214.

Bonaldo, R.M., and Bellwood, D.R. (2011) Parrotfish predation on massive Porites on the Great Barrier Reef. Coral Reefs, 30 (1). pp. 259-269.

Trip, E.D.L., Clements, K.D., Raubenheimer, D., and Choat, J.H. (2011) Reproductive biology of an odacine labrid, Odax pullus. Journal of Fish Biology, 78 (3). pp. 741-761.

Holmes, Thomas H., and McCormick, Mark I. (2011) Response across a gradient: behavioural reactions of newly settled fish to predation cues. Animal Behaviour, 81 (3). pp. 543-550.

Moore, B.R., Stapley, J., Allsop, Q., Newman, S.J., Ballagh, A., Welch, D.J., and Lester, R.J.G. (2011) Stock structure of blue threadfin Eleutheronema tetradactylum across northern Australia, as indicated by parasites. Journal of Fish Biology, 78 (3). pp. 923-936.

Hoey, Andrew S., and Bellwood, David R. (2011) Suppression of herbivory by macroalgal density: a critical feedback on coral reefs? Ecology Letters, 14 (3). pp. 267-273.

Aeby, Greta S., Williams, Gareth J., Franklin, Erik C., Haapkyla, Jessica, Harvell, C. Drew, Neale, Stephen, Page, Cathie A., Raymundo, Laurie, Vargas-Ángel, Bernardo, Willis, Bette L., Work, Thierry M., and Davy, Simon K. (2011) Growth anomalies on the coral genera Acropora and Porites are strongly associated with host density and human population size across the Indo-Pacific. PLoS ONE, 6 (2). e16887. pp. 1-9.

Bannister, Raymond, Hoogenboom, Mia, Anthony, Kenneth R. N., Battershill, Chris, Whalan, Stephen, Webster, Nicole, and De Nys, Rocky (2011) Incongruence between the distribution of a common coral reef sponge and photosynthesis. Marine Ecology Progress Series, 423. pp. 95-100.

Munday, Philip L., Gagliano, Monica, Donelson, Jennifer M., Dixson, Danielle L., and Thorrold, Simon (2011) Ocean acidification does not affect the early life history development of a tropical marine fish. Marine Ecology Progress Series, 423. pp. 211-221.

Haapkylä, Jessica, Unsworth, Richard K.F., Flavell, Mike, Bourne, David G., Schaffelke, Britta, and Willis, Bette L. (2011) Seasonal rainfall and runoff promote coral disease on an inshore reef. PLoS ONE, 6 (2). e16893. pp. 1-10.

Shaddick, Kim, Gilligan, Dean M., Burridge, Christopher P., Jerry, Dean R., Truong, Kiet, and Beheregaray, Luciano B. (2011) Historic divergence with contemporary connectivity in a catadromous fish, the estuary perch (Macquaria colonorum). Canadian Journal of Fisheries and Aquatic Sciences, 68 (2). pp. 304-318.

Wu, Xugan, Wang, Zongkai, Cheng, Yong Xu, Zeng, Chaoshu, Yang, Xiaozhen, and Lu, Jianfeng (2011) Effects of dietary phospholipids and highly unsaturated fatty acids on the precocity, survival, growth and hepatic lipid composition of juvenile Chinese mitten crab, Eriocheir sinensis (H. Milne-Edwards). Aquaculture Research, 42 (3). pp. 457-468.

Hasbi, Ghitarina, de Nys, Rocky, Burns, Kathryn, Whalan, Stephen, and Dunlap, Walter C. (2011) Hepatic coenzyme Q redox balance of fishes as a potential bioindicator of environmental contamination by polycyclic aromatic hydrocarbons. Biology Letters, 7 (1). pp. 123-126.

Liu, Zhijun, Wu, Xugan, Cheng, Yongxu, Zeng, Chaoshu, and Yang, Xiaozhen (2011) Ovarian re-maturation following the first spawning in the Chinese mitten crab, Eriocheir sinensis (H. Milne-Edwards). Aquaculture Research, 42 (3). pp. 417-426.

Bonaldo, R.M., Krajewski, P.J., and Bellwood, D.R. (2011) Relative impact of parrotfish grazing scars on massive Porites corals at Lizard Island, Great Barrier Reef. Marine Ecology Progress Series, 423. pp. 223-233.

Veilleux, Heather D., van Herwerden, Lynne, Evans, Richard D. , Travers, Michael J. , and Newman, Stephen J. (2011) Strong genetic subdivision generates high genetic variability among eastern and western Australian populations of Lutjanus carponotatus (Richardson). Fisheries Research, 108 (1). pp. 74-80.

Gagliano, M., Lema, A.K., Depczynski, M., and Whalan, S. (2011) Use it and lose it: lipofuscin accumulation in the midbrain of a coral reef fish. Journal of Fish Biology, 78 (2). pp. 659-666.

Horne, John B., Van Herwerden, Lynne, and Choat, J. Howard (2011) Just because the shoe fits doesn't mean you should wear it: complex evolutionary patterns in the reef fish genus Naso. In: Abstracts from Society for Integrative and Comparative Biology Annual Meeting. p. 1. From: Society for Integrative and Comparative Biology Annual Meeting, 3-7 January 2011, Salt Lake City, UT, USA.

Bird, Michael I., Wurster, Christopher M., de Paula Silva, Pedro H., Bass, Adrian M., and de Nys, Rocky (2011) Algal biochar: production and properties. Bioresource Technology, 102 (2). 1886- 1891.

Mitchell, Matthew D., McCormick, Mark I., Ferrari, Maud C.O., and Chivers, Douglas P. (2011) Coral reef fish rapidly learn to identify multiple unknown predators upon recruitment to the reef. PLoS ONE, 6 (1). e15764. pp. 1-6.

Russ, Garry R., and Alcala, Angel C. (2011) Enhanced biodiversity beyond marine reserve boundaries: the cup spillith over. Ecological Applications, 21 (1). pp. 241-250.

Scardino, Andrew J., and de Nys, Rocky (2011) Mini review: biomimetic models and bioinspired surfaces for fouling control. Biofouling, 27 (1). pp. 73-86.

Hutson, K.S., Brock, E.L., and Steer, M.A. (2011) Spatial variation in parasite abundance: evidence of geographical population structuring in southern garfish Hyporhamphus melanochir. Journal of Fish Biology, 78 (1). pp. 166-182.

Catalano, Sarah R., Hutson, Kate S., Ratcliff, Rodney M., and Whittington, Ian D. (2011) The value of host and parasite identification for arripid fish. Marine and Freshwater Research, 62 (1). pp. 72-82.

Bonin, Mary C., Almany, Glenn R., and Jones, Geoffrey P. (2011) Contrasting effects of habitat loss and fragmentation on coral-associated reef fishes. Ecology, 92 (7). pp. 1503-1512.

Saenz-Agudelo, P., Jones, G.P., Thorrold, S.R., and Planes, S. (2011) Detrimental effects of host anemone bleaching on anemonefish populations. Coral Reefs, 30 (2). pp. 497-506.

Januchowski-Hartley, Stephanie, VanDerWal, Jeremy, and Sydes, Damon (2011) Effective control of aquatic invasive species in tropical Australia. Environmental Management, 48 (3). pp. 568-576.

Ballagh, D.A., Pankhurst, P.M., and Fielder, D.S. (2011) Embryonic development of mulloway, Argyrosomus japonicus, and egg surface disinfection using ozone. Aquaculture, 318 (3-4). pp. 475-478.

Connolly, Sean R., and Dornelas, Maria (2011) Fitting and empirical evaluation of models for species abundance distributions. In: Magurran, Anne E., and McGill, Brian J., (eds.) Biological diversity: frontiers in measurement and assessment. Oxford University Press, Oxford, UK, pp. 123-140.

Scaps, P, and Haapkyla, J (2011) Focal white spots on Porites spp. from the north Andaman Sea, Western Thailand and the Wakatobi Marine National Park, Indonesia. Galaxea, Journal of Coral Reef Studies, 13. pp. 3-4.

Miller, Emily J., Eldridge, Mark D.B., Morris, Keith D., Zenger, Kyall R., and Herbert, Catherine A. (2011) Genetic consequences of isolation: island tammar wallaby (Macropus eugenii) populations and the conservation of threatened species. Conservation Genetics, 12 (6). pp. 1619-1631.

Miller-Sims, Vanessa C., Atema, Jelle, Gerlach, Gabriele, and Kingsford, Michael (2011) How stable are the reef odor preferences of settling reef fish larvae? Marine and Freshwater Behaviour and Physiology, 44 (3). pp. 133-141.

Ballagh, Aaron C., Welch, David, Williams, Ashley J., Mapleston, Amos, Tobin, Andrew, and Marton, Nicholas (2011) Integrating methods for determining length-at-age to improve growth estimates for two large scombrids. Fishery Bulletin, 109 (1). pp. 90-100.

Abrantes, Kátya G., and Barnett, Adam (2011) Intrapopulation variations in diet and habitat use in a marine apex predator, the broadnose sevengill shark Notorynchus cepedianus. Marine Ecology Progress Series, 442. pp. 133-148.

Krajewski, João Paulo, Floeter, Sergio R., Jones, Geoffrey P., and Leite, Fosca P.P (2011) Patterns of variation in behaviour within and among reef fish species on an isolated tropical island: influence of exposure and substratum. Journal of the Marine Biological Association of the United Kingdom, 91 (Special Issue 6). pp. 1359-1368.

Gaither, Michelle R., Bowen, Brian W., Bordenave, Tiane-Rae, Rocha, Luiz A., Newman, Stephen J., Gomez, Juan A., van Herwerden, Lynne, and Craig, Matthew T. (2011) Phylogeography of the reef fish Cephalopholis argus (Epinephelidae) indicates Pleistocene isolation across the indo-pacific barrier with contemporary overlap in the coral triangle. BMC Evolutionary Biology, 11. 189. pp. 1-15.

Maynard, J.A., Anthony, K.R.N., Harvell, C.D., Burgman, M.A., Beeden, R., Sweatman, H., Heron, S.F., Lamb, J.B., and Willis, B.L. (2011) Predicting outbreaks of a climate-driven coral disease in the Great Barrier Reef. Coral Reefs, 30 (2). pp. 485-495.

Pandolfi, John M., Connolly, Sean R., Marshall, Dustin J., and Cohen, Anne L. (2011) Projecting coral reef futures under global warming and ocean acidification. Science, 333 (6041). pp. 418-422.

Trip, E.D.L., Raubenheimer, D., Clements, K.D., and Choat, J.H. (2011) Reproductive demography of a temperate protogynous and herbivorous fish, Odax pullus (Labridae, Odacini). Marine and Freshwater Research, 62 (2). pp. 176-186.

Milione, Michael, and Southgate, Paul (2011) Seasonal changes in recruitment of Pteria penguin in North Queensland, Australia. Journal of Shellfish Research, 30 (1). pp. 89-94.

Chong-Seng, K.M., Cole, A.J., Pratchett, M.S., and Willis, B.L. (2011) Selective feeding by coral reef fishes on coral lesions associated with brown band and black band disease. Coral Reefs, 30 (2). pp. 473-481.

Hughes, T.P., Bellwood, D.R., Baird, A.H., Brodie, J., Bruno, J.F., and Pandolfi, J.M. (2011) Shifting base-lines, declining coral cover, and the erosion of reef resilience: comment on Sweatman et al. (2011). Coral Reefs, 30 (3). pp. 653-660.

Clode, P.L., Lema, K., Saunders, M., and Weiner, S. (2011) Skeletal mineralogy of newly settling Acropora millepora (Scleractinia) coral recruits. Coral Reefs, 30 (1). pp. 1-8.

Moore, B.R., Welch, D.J., and Simpfendorfer, C.A. (2011) Spatial patterns in the demography of a large estuarine teleost: king threadfin, Polydactylus macrochir. Marine and Freshwater Research, 62 (8). pp. 937-951.

Newman, S.J., Pember, M.B., Rome, B.M., Mitsopoulos, G.E.A., Skepper, C.L., Allsop, Q., Saunders, T., Ballagh, A.C., van Herwerden, L., Garrett, R.N., Gribble, N.A., Stapley, J.M., Meeuwig, J.J., Moore, B.R., and Welch, D.J. (2011) Stock structure of blue threadfin Eleutheronema tetradactylum across northern Australia as inferred from stable isotopes in sagittal otolith carbonate. Fisheries Management and Ecology, 18 (3). pp. 246-257.

Welch, D.J., Ovenden, J., Simpfendorfer, C., Tobin, A., Morgan, J.A.T., Street, R., White, J., Harry, A., Schroeder, R., and Macbeth, W.G. (2011) Stock structure of exploited shark species in north-eastern Australia. Report to the Fisheries Research & Development Corporation, Project 2007/035. Fishing & Fisheries Research Centre Technical Report No. 12. Report. Fisheries Research and Development Corporation, James Cook University, Townsville, QLD, Australia.

Lefèvre, Carine D., and Bellwood, David R. (2011) Temporal variation in coral reef ecosystem processes: herbivory of macroalgae by fishes. Marine Ecology Progress Series, 422. pp. 239-251.

Pickering, Timothy D., Ponia, Ben, Hair, Cathy A., Southgate, Paul C., Poloczanska, Elvira S., Della Patrona, Luc, Teitelbaum, Antoine, Mohan, Chadag V., Phillips, Michael J., Bell, Johann D., and De Silva, Sena (2011) Vulnerability of aquaculture in the tropical Pacific to climate change. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, Noumea, New Caledonia, pp. 647-731.

Gehrke, Peter C., Sheaves, Marcus J., Terry, James P., Boseto, David T., Ellison, Joanna C., Figa, Boga S., and Wani, Jacob (2011) Vulnerability of freshwater and estuarine fish habitats in the tropical Pacific to climate change. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, Noumea, New Caledonia, pp. 369-432.

Gehrke, Peter C., Sheaves, Marcus J., Boseto, David T., Figa, Boga S., and Wani, Jacob (2011) Vulnerability of freshwater and estuarine fisheries in the tropical Pacific to climate change. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, Noumea, New Caledonia, pp. 577-646.

Waycott, Michelle, McKenzie, Len, Mellors, Jane E., Ellison, Joanna C., Sheaves, Marcus T., Collier, Catherine, Schwarz, Anne-Maree, Webb, Arthur, Johnson, Johanna E., and Payri, Claude E. (2011) Vulnerability of mangroves, seagrasses and intertidal flats in the tropical Pacific to climate change. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, Noumea, New Caledonia, pp. 297-368.

Paoli, Gary D., Yaap, Betsy, Wells, Phillip L., and Sileuw, Aisyah (2010) CSR, oil palm and the RSPO: translating boardroom philosophy into conservation action on the ground. Tropical Conservation Science, 3 (4). pp. 438-446.

Newman, Stephen J., Allsop, Quentin, Ballagh, Aaron C., Garrett, Rod N., Gribble, Neil, Meeuwig, Jessica J., Mitsopoulos, Gabby E.A., Moore, Bradley R., Pember, Matthew B., Rome, Ben M., Saunders, Thor, Skepper, Craig L., Stapley, Jason M., van Herwerden, Lynne, and Welch, David J. (2010) Variation in stable isotope (δ18O and δ13C) signatures in the sagittal otolith carbonate of king threadfin, Polydactylus macrochir across northern Australia reveals multifaceted stock structure. Journal of Experimental Marine Biology and Ecology, 396 (1). pp. 53-60.

Done, T.J., DeVantier, L.M., Turak, E., Fisk, D.A., Wakeford, M., and van Woesik, R. (2010) Coral growth on three reefs: development of recovery benchmarks using a space for time approach. Coral Reefs, 29 (4). pp. 815-833.

Slater, M.J., Carton, A.G., and Jeffs, A.G. (2010) Highly localised distribution patterns of juvenile sea cucumber Australostichopus mollis. New Zealand Journal of Marine and Freshwater Research, 44 (4). pp. 201-216.

Weeks, Rebecca, Russ, Garry R., Bucol, Abner A., and Alcala, Angel C. (2010) Incorporating local tenure in the systematic design of marine protected area networks. Conservation Letters, 3 (6). pp. 445-453.

Berumen, M. L, Walsh, H.J., Raventos, N., Planes, S., Jones, G.P., Starczak, V., and Thorrold, S.R. (2010) Otolith geochemistry does not reflect dispersal history of clownfish larvae. Coral Reefs, 29 (4). pp. 883-891.

Abesamis, R.A., and Russ, G.R. (2010) Patterns of recruitment of coral reef fishes in a monsoonal environment. Coral Reefs, 29 (4). pp. 911-921.

Gardiner, N.M., and Jones, G.P. (2010) Synergistic effects of habitat preference and gregarious behaviour on habitat use in coral reef cardinalfish. Coral Reefs, 29 (4). pp. 845-856.

Magnusson, Marie, Heimann, Kirsten, Quayle, Pamela, and Negri, Andrew P. (2010) Additive toxicity of herbicide mixtures and comparative sensitivity of tropical benthic microalgae. Marine Pollution Bulletin, 60 (11). pp. 1978-1987.

McCook, Laurence, Ayling, Anthony, Cappo, Mike, Choat, J. Howard, Evans, Richard D., De Freitas, Debora M., Heupel, Michelle, Hughes, Terry P., Jones, Geoffrey P., Mapstone, Bruce, Marsh, Helene, Mills, Morena, Molloy, Fergus J., Pitcher, C. Roland, Pressey, Robert L., Russ, Garry R., Sutton, Stephen, Sweatman, Hugh, Tobin, Renae, Wachenfeld, David R., and Williamson, David H. (2010) Adaptive management of the Great Barrier Reef: A globally significant demonstration of the benefits of networks of marine reserves. Proceedings of the National Academy of Sciences of the United States of America, 107 (43). 18278- 18285.

Babcock, R.C., Shears, N.T., Alcala, A.C., Barrett, N.S., Edgar, G.J., Lafferty, K.D., McClanahan, T.R., and Russ, G.R. (2010) Decadal trends in marine reserves reveal differential rates of change in direct and indirect effects. Proceedings of the National Academy of Sciences of the United States of America, 107 (43). pp. 18256-18261.

Huerlimann, Roger, De Nys, Rocky, and Heimann, Kirsten (2010) Growth, lipid content, productivity, and fatty acid composition of tropical microalgae for scale-up production. Biotechnology and Bioengineering, 107 (2). pp. 245-257.

Gardiner, Naomi M., Munday, Philip L., and Nilsson, Göran E. (2010) Counter-gradient variation in respiratory performance of coral reef fishes at elevated temperatures. PLoS ONE, 5 (10). e13299. pp. 1-13.

Welch, D.J., Ballagh, A., Newman, S.J., Lester, R.J., Moore, B., van Herwerden, L., Horne, J., Allsop, Q., Saunders, T., Stapley, J., and Gribble, N.A. (2010) Defining the Stock Structure of Northern Australia's Threadfin Salmon Species. Report. James Cook University, Townsville, QLD, Australia.

Price, Samantha A., Wainwright, Peter C., Bellwood, David R., Kazancioglu, Erem, Collar, David C., and Near, Thomas J. (2010) Functional innovations and morphological diversification in parrotfish. Evolution, 64 (10). pp. 3057-3068.

Camus, Thomas, and Zeng, Chaoshu (2010) Roles of microalgae on total egg production over female lifespan and egg incubation time, naupliar and copepodite survival, sex ratio and female life expectancy of the copepod Bestiolina similis. Aquaculture Research, 41 (11). pp. 1717-1726.

Goatley, Christopher H.R., and Bellwood, David R. (2010) Biologically mediated sediment fluxes on coral reefs: sediment removal and off-reef transportation by the surgeonfish Ctenochaetus striatus. Marine Ecology Progress Series, 415. pp. 237-245.

Booth, Mark A., Allan, Geoff L., and Pirozzi, Igor (2010) Estimation of digestible protein and energy requirements of yellowtail kingfish Seriola lalandi using a factorial approach. Aquaculture, 307 (3-4). pp. 247-259.

Johansson, C.L., Bellwood, D.R., and Depczynski, M. (2010) Sea urchins, macroalgae and coral reef decline: a functional evaluation of an intact reef system, Ningaloo, Western Australia. Marine Ecology Progress Series, 414. pp. 65-74.

Carton, Alexander G., and Vaughan, Melanie R. (2010) Behavioural and anatomical measures of visual acuity in first-feeding Yellowtail Kingfish (Seriola lalandi)larvae. Environmental Biology of Fishes, 89 (1). pp. 3-10.

Walker, Stefan P.W., Thibaut, Loïc, and McCormick, Mark I. (2010) Density-dependent sex ratio adjustment and the allee effect: a model and a test using a sex-changing fish. American Naturalist, 176 (3). pp. 312-321.

Luter, Heidi M., Whalan, Steve, and Webster, Nicole S. (2010) Exploring the role of microorganisms in the disease-like syndrome affecting the sponge Ianthella basta. Applied and Environmental Microbiology, 76 (17). pp. 5736-5744.

Robinson, Nicholas Andrew, Schipp, Glenn, Bosmans, Jérôme, and Jerry, Dean Robert (2010) Modelling selective breeding in protandrous, batch-reared Asian sea bass (Lates calcarifer, Bloch) using walkback selection. Aquaculture Research, 41 (10). e643-e655.

Almany, G.R., Hamilton, R.J., Williamson, D.H., Evans, R.D., Jones, G.P., Matawai, M., Potuku, T., Rhodes, K.L., Russ, G.R., and Sawynock, B. (2010) Research partnerships with local communities: two case studies from Papua New Guinea and Australia. Coral Reefs, 29 (3). pp. 567-576.

Slater, Matthew J., and Carton, Alexander G. (2010) Sea cucumber habitat differentiation and site retention as determined by intraspecific stable isotope variation. Aquaculture Research, 41 (10). pp. 695-702.

Ballagh, Debra A., Fielder, D. Stewart, and Pankhurst, Patricia M. (2010) Weaning requirements of larval mulloway, Argyrosomus japonicus. Aquaculture Research, 41 (10). e493-e504.

Heron, Scott F., Willis, Bette L., Skirving, William J., Eakin, C. Mark, Page, Cathie A., and Miller, Ian R. (2010) Summer hot snaps and winter conditions: modelling white syndrome outbreaks on Great Barrier Reef corals. PLoS ONE, 5 (8). e12210. pp. 1-11.

Russ, Garry R., and Alcala, Angel C. (2010) Decadal-scale rebuilding of predator biomass in Philippine marine reserves. Oecologia, 163 (4). pp. 1103-1106.

Webster, Nicole S., Taylor, Michael W., Behnam, Faris, Lücker, Sebastian, Rattei, Thomas, Whalan, Stephen, Horn, Matthias, and Wagner, Michael (2010) Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts. Environmental Microbiology, 12 (8). pp. 2070-2082.

Pollock, F. Joseph, Morris, Pamela J., Willis, Bette L., and Bourne, David G. (2010) Detection and quantification of the coral pathogen vibrio coralliilyticus by real-time PCR with TaqMan fluorescent probes. Applied and Environmental Microbiology, 76 (15). pp. 5282-5286.

Winters, Kate L., van Herwerden, Lynne, Choat, J. Howard, and Robertson, D.R. (2010) Phylogeography of the Indo-Pacific parrotfish Scarus psittacus: isolation generates distinctive peripheral populations in two oceans. Marine Biology, 157 (8). pp. 1679-1691.

Gagliano, Monica, McCormick, Mark I., Moore, James A., and Depczynski, Martial (2010) The basics of acidification: baseline variability of pH on Australian coral reefs. Marine Biology, 157 (8). pp. 1849-1856.

Booth, Mark A., Pirozzi, Igor, Allan, Geoff L., and Fielder, D. Stewart (2010) Aquafin CRC Project 1B5: Feed Technology for Temperate f\Fish Species. Volume 2: Diet Development. Report. Industry and Investment NSW, NSW, Australia.

Alva-Campbell, Yvette, Floeter, Sergio R., Robertson, D. Ross, Bellwood, David R., and Bernardi, Giacomo (2010) Molecular phylogenetics and evolution of Holacanthus angelfishes (Pomacanthidae). Molecular Phylogenetics and Evolution, 56 (1). pp. 456-461.

Lind, Curtis E., Evans, Brad S., Taylor, Joseph J.U., and Jerry, Dean R. (2010) The consequences of differential family survival rates and equalizing maternal contributions on the effective population size (Ne) of cultured silver-lipped pearl oysters, Pinctada maxima. Aquaculture Research, 41 (8). pp. 1229-1242.

Hobbs, Jean-paul, and Van Herwerden, Lynne (2010) Evolutionary novelty at range edges for coral reef organisms. Science, 328 (5985). p. 1558.

Kvingedal, Renate, Evans, Brad S., Lind, Curtis E., Taylor, Joseph J.U., Dupont-Nivet, Mathilde, and Jerry, Dean R. (2010) Population and family growth response to different rearing location, heritability estimates and genotype×environment interaction in the silver-lip pearl oyster (Pinctada maxima). Aquaculture, 304 (1-4). pp. 1-6.

Penin, Lucie, Michonneau, François, Baird, Andrew H., Connolly, Sean R., Pratchett, Morgan S., Kayal, Mohsen, and Adjeroud, Mehdi (2010) Early post-settlement mortality and the structure of coral assemblages. Marine Ecology Progress Series, 408. pp. 55-64.

Bennett, S., Vergés, A., and Bellwood, D.R. (2010) Branching coral as a macroalgal refuge in a marginal coral reef system. Coral Reefs, 29 (2). pp. 471-480.

Hoey, A.S., and Bellwood, D.R. (2010) Cross-shelf variation in browsing intensity on the Great Barrier Reef. Coral Reefs, 29 (2). pp. 499-508.

Palmer, Caroline V., Bythell, John C., and Willis, Bette L. (2010) Levels of immunity parameters underpin bleaching and disease susceptibility of reef corals. FASEB Journal, 24 (6). pp. 1935-1946.

Jones, D.B., Jerry, D.R., McCormick, M.I., and Bay, L.K. (2010) The population genetic structure of a common tropical damselfish on the Great Barrier Reef and eastern Papua New Guinea. Coral Reefs, 29 (2). pp. 455-467.

McCormick, Mark I., and Meekan, Mark G. (2010) The importance of attitude: the influence of behaviour on survival at an ontogenetic boundary. Marine Ecology Progress Series, 407. pp. 173-185.

McCormick, Mark I., Ryen, Christopher A., Munday, Philip L., and Walker, Stefan P.W. (2010) Differing mechanisms underlie sexual size-dimorphism in two populations of a sex-changing fish. PLoS ONE, 5 (5). e10616. 1- 8.

Sheaves, Marcus, and Johnston, Ross (2010) Implications of spatial variability of fish assemblages for monitoring of Australia’s tropical estuaries. Aquatic Conservation: marine and freshwater ecosystems , 20 (3). pp. 348-356.

Crothers-Stomps, C., Høj, L., Bourne, D.G., Hall, M.R., and Owens, L. (2010) Isolation of lytic bacteriophage against Vibrio harveyi. Journal of Applied Microbiology, 108 (5). pp. 1744-1750.

Wu, Xugan, Cheng, Yongxu, Zeng, Chaoshu, Wang, Chunlin, and Cui, Zhaoxia (2010) Reproductive performance and offspring quality of the first and the second brood of female swimming crab, Portunus Trituberculatus. Aquaculture, 303 (1-4). pp. 94-100.

Littman, Raechel A., Bourne, David G., and Willis, Bette L. (2010) Responses of coral-associated bacterial communities to heat stress differ with Symbiodinium type on the same coral host. Molecular Ecology, 19 (9). pp. 1978-1990.

Lefevre, Carine, and Bellwood, David (2010) Seasonality and dynamics in coral reef macroalgae: variation in condition and susceptibility to herbivory. Marine Biology, 157 (5). pp. 955-965.

Weeks, Rebecca, Russ, Garry R., Bucol, Abner A., and Alcala, Angel C. (2010) Shortcuts for marine conservation planning: the effectiveness of socioeconomic data surrogates. Biological Conservation, 143 (5). pp. 1236-1244.

Williams, Ashley J., Little, L. Richard, Punt, André E., Mapstone, Bruce D., Davies, Campbell R., and Heupel, Michelle R. (2010) Exploring movement patterns of an exploited coral reef fish when tagging data are limited. Marine Ecology Progress Series, 405. pp. 87-99.

Bannister, R.J., Battershill, C.N., and de Nys, R. (2010) Demographic variability and long-term change in a coral reef sponge along a cross-shelf gradient of the Great Barrier Reef. Marine and Freshwater Research, 61 (4). pp. 389-396.

Hobbs, Jean-Paul A., Ayling, Anthony, Choat, J. Howard, Gilligan, Justin J., McDonald, Christian A., Neilson, Joseph, and Newman, Stephen J. (2010) New records of marine fishes illustrate the biogeographic importance of Christmas Island, Indian Ocean. Zootaxa, 2422. pp. 63-68.

Yang, Xiaozhen, Wang, Jinfeng, Fan, Peng, Zhao, Liulan, Cheng, Yongxu, Wu, Xugan, and Zeng, Chaoshu (2010) Survival, growth, sexual maturity and tissue histamine accumulation of the mysis, Neomysis awatschensis and N. japonica Nakazawa, fed histamine supplemented diets. Aquaculture, 302 (3-4). pp. 256-260.

McGinty, Erin L., Evans, Brad S., Taylor, Joseph U.U., and Jerry, Dean R. (2010) Xenografts and pearl production in two pearl oyster species, P. maxima and P. margaritifera: effect on pearl quality and a key to understanding genetic contribution. Aquaculture, 302 (3-4). pp. 175-181.

Pirozzi, Igor, Booth, Mark A., and Allan, Geoff L. (2010) A factorial approach to deriving dietary specifications and daily feed intake for mulloway, Argyrosomus japonicus, based on the requirements for digestible protein and energy. Aquaculture, 302 (3-4). pp. 235-242.

Brown, I., Sumpton, W., McLennan, M., Mayer, D., Campbell, M., Kirkwood, J., Butcher, A., Halliday, I., Mapleston, A., Welch, D., Begg, G.A., and Sawynok, B. (2010) An improved technique for estimating short-term survival of released line-caught fish, and an application comparing barotrauma-relief methods in red emperor (Lutjanus sebae Cuvier 1816). Journal of Experimental Marine Biology and Ecology, 385 (1-2). pp. 1-7.

Aldred, Nick, Scardino, Andrew, Cavaco, Andreia, de Nys, Rocky, and Clare, Anthony S. (2010) Attachment strength is a key factor in the selection of surfaces by barnacle cyprids (Balanus amphitrite) during settlement. Biofouling, 26 (3). pp. 287-299.

Weeks, Rebecca, Russ, Garry R., Alcala, Angel C., and White, Alan T. (2010) Effectiveness of marine protected areas in the Philippines for biodiversity conservation. Conservation Biology, 24 (2). pp. 531-540.

Salomon, Yacov, Connolly, Sean R., and Bode, Lance (2010) Effects of asymmetric dispersal on the coexistence of competing species. Ecology Letters, 13 (4). pp. 432-441.

Aswani, Shankar, and Sabetian, Armagan (2010) Implications of urbanization for artisanal parrotfish fisheries in the Western Solomon Islands. Conservation Biology, 24 (2). pp. 520-530.

Wu, Xugan, Cheng, Yongxu, Zeng, Chaoshu, Wang, Chunlin, and Yang, Xiaozhen (2010) Reproductive performance and offspring quality of wild-caught and pond-reared swimming crab Portunus trituberculatus broodstock. Aquaculture, 301 (1-4). pp. 78-84.

Knip, Danielle M., Heupel, Michelle R., and Simpfendorfer, Colin A. (2010) Sharks in nearshore environments: models, importance, and consequences. Marine Ecology Progress Series, 402. pp. 1-11.

Romano, Nicholas, and Zeng, Chaoshu (2010) Changes to the histological gill structure and haemolymph composition of early blue swimmer crab Portunus pelagicus juveniles during elevated ammonia-N exposure and the post-exposure recovery. Aquaculture Research, 41 (4). pp. 468-480.

Wu, Xuang, Zhou, Bo, Cheng, Yongxu, Zeng, Chaoshu, Wang, Chunlin, and Feng, Lang (2010) Comparison of gender differences in biochemical composition and nutritional value of various edible parts of the blue swimmer crab. Journal of Food Composition and Analysis, 23 (2). pp. 154-159.

Cole, A.J, Pratchett, M.S., and Jones, G.P. (2010) Corallivory in tubelip wrasses: diet, feeding and trophic importance. Journal of Fish Biology, 76 (4). pp. 818-835.

Hoey, A.S., and Bellwood, D.R. (2010) Damselfish territories as a refuge for macroalgae on coral reefs. Coral Reefs, 29 (1). pp. 107-118.

Raina, Jean-Baptiste, Dinsdale, Elizabeth A., Willis, Bette L., and Bourne, David G. (2010) Do the organic sulfur compounds DMSP and DMS drive coral microbial associations? Trends in Microbiology, 18 (3). pp. 101-108.

Romano, Nicholas, and Zeng, Chaoshu (2010) Survival, osmoregulation and ammonia-N excretion of blue swimmer crab, Portunus pelagicus, juveniles exposed to different ammonia-N and salinity combinations. Comparative Biochemistry and Physiology - Part C, 151 (2). pp. 222-228.

Andrés, Mireia, Rotllant, Guiomar, and Zeng, Chaoshu (2010) Survival, development and growth of larvae of the blue swimmer crab, Portunus pelagicus, cultured under different photoperiod conditions. Aquaculture, 300 (1-4). pp. 218-222.

Hobbs, Jean-Paul, and Frisch, Ashley J. (2010) Coral disease in the Indian Ocean: taxonomic susceptibility, spatial distribution and the role of host density on the prevalence of white syndrome. Diseases of Aquatic Organisms, 89 (1). pp. 1-8.

Sumpton, W.D., Brown, I.W., Mayer, D.G., McLennan, M.F., Mapleston, A., Butcher, A.R., Welch, D.J., Kirkwood, J.M., Sawynok, B., and Begg, G.A. (2010) Assessing the effects of line capture and barotrauma relief procedures on post-release survival of key tropical reef fish species in Australia using recreational tagging clubs. Fisheries Management and Ecology, 17 (1). pp. 77-88.

Wong, Marian (2010) Ecological constraints and benefits of philopatry promote group-living in a social but non-cooperatively breeding fish. Proceedings of the Royal Society of London Series B, Biological Sciences, 277 (1680). pp. 353-358.

Wu, X., Chang, G., Cheng, Y., Zeng, C., Southgate, P.C., and Lu, J. (2010) Effects of dietary phospholipid and highly unsaturated fatty acid on the gonadal development, tissue proximate composition, lipid class and fatty acid composition of precocious Chinese mitten crab, Eriocheir sinensis. Aquaculture Nutrition, 16 (1). pp. 25-36.

Bellwood, D.R., Klanten, S., Cowman, P.F., Pratchett, M.S., Konow, N., and Van Herwerden, L. (2010) Evolutionary history of the butterflyfishes (f: Chaetodontidae) and the rise of coral feeding fishes. Journal of Evolutionary Biology, 23 (2). pp. 335-349.

Pollock, F. Joseph, Wilson, Bryan, Johnson, Wesley R., Morris, Pamela J., Willis, Bette L., and Bourne, David G. (2010) Phylogeny of the coral pathogen Vibrio coralliilyticus. Environmental Microbiology Reports, 2 (1). pp. 172-178.

Evans, R.D., Van Herwerden, L., Russ, G.R., and Frisch, A.J. (2010) Strong genetic but not spatial subdivision of two reef fish species targeted by fishers on the Great Barrier Reef. Fisheries Research, 102 (1-2). pp. 16-25.

Sato, Yui, Willis, Bette L., and Bourne, David G. (2010) Successional changes in bacterial communities during the development of black band disease on the reef coral, Montipora hispida. ISME Journal, 4 (2). pp. 203-214.

Masonjones, Heather D., Rose, Emily, McRae, Lori Benson, and Dixson, Danielle (2010) An examination of the population dynamics of syngnathid fishes within Tampa Bay, Florida, USA. Current Zoology, 56 (1). pp. 118-133.

Holmes, Thomas H., and McCormick, Mark I. (2010) Size-selectivity of predatory reef fish on juvenile prey. Marine Ecology Progress Series, 399. pp. 273-283.

Hoey, Andrew, and Bellwood, David (2010) Among-habitat variation in herbivory on Sargassum spp. on a mid-shelf reef in the northern Great Barrier Reef. Marine Biology, 157 (1). pp. 189-200.

Dixson, Danielle L., Munday, Philip L., and Jones, Geoffrey P. (2010) Ocean acidification disrupts the innate ability of fish to detect predator olfactory cues. Ecology Letters, 13 (1). pp. 68-75.

Tobin, A., Schlaff, A., Tobin, R., Penny, A., Ayling, Anthony, Krause, B., Welch, D., Sutton, S., Sawynok, B., Marshall, N., Marshall, P., and Maynard, J. (2010) Adapting to Change: Minimising Uncertainty about the Effects of Rapidly-Changing Environmental Conditions on the Queensland Coral Reef Fin Fish Fishery. Report. Fishing and Fisheries Research Centre, James Cook University, Townsville, Qld, Australia.

Tobin, R.C., Sutton, S.G., Penny, A., Williams, L., Maroske, J., and Nilsson, J. (2010) Baseline Socio-Economic Data for Queensland East Coast Inshore and Rocky Reef Fishery Stakeholders. Part A: Commercial Fishers. Report. Fishing and Fisheries Research Centre, Townsville, QLD. Australia.

Tobin, R.C., Beggs, K., Sutton, S.G., Penny, A., Maroske, J., and Williams, L. (2010) Baseline Socio-Economic Data for Queensland East Coast Inshore and Rocky Reef Fishery Stakeholders. Part B: Charter Fishers. Report. Fishing and Fisheries Research Centre, Townsville, QLD, Australia.

Tobin, R.C., Beggs, K., Sutton, S.G., and Penny, A. (2010) Baseline Socio-Economic Data for Queensland East Coast Inshore and Rocky Reef Fishery Stakeholders. Part C: Recreational Fishers. Report. Fishing and Fisheries Research Centre, Townsville, QLD, Australia.

Tobin, R.C., Beggs, K., Sutton, S.G., and Penny, A. (2010) Baseline Socio-Economic Data for Queensland East Coast Inshore and Rocky Reef Fishery Stakeholders. Part D: Seafood Consumers. Report. Fishing and Fisheries Research Centre, Townsville, QLD, Australia.

Meekan, Mark G., von Kuerthy, Corinna, Mccormick, Mark I., and Radford, Ben (2010) Behavioural mediation of the costs and benefits of fast growth in a marine fish. Animal Behaviour, 79 (4). pp. 803-809.

Cvitanovic, C., and Hoey, A.S. (2010) Benthic community composition influences within-habitat variation in macroalgal browsing on the Great Barrier Reef. Marine and Freshwater Research, 61 (9). pp. 999-1005.

Munday, P.L., Kuwamura, T., and Kroon, F.J. (2010) Bi-directional sex change in marine fishes. In: Cole, Kathleen S., (ed.) Reproduction and sexuality in marine fishes: patterns and processes. University of California Press, Berkeley, pp. 241-271.

Wilson, S.K., Adjeroud, M., Bellwood, D.R., Berumen, M.L., Booth, D., Bozec, Y.-Marie, Chabanet, P., Cheal, A., Cinner, J., Depczynski, M., Feary, D.A., Gagliano, M., Graham, Nicholas, Halford, A.H., Halpern, B.S., Harborne, A.R., Hoey, A.S., Holbrook, S.J., Jones, G.P., Kulbiki, M., Letourneur, Y., De Loma, T.L., McClanahan, T, McCormick, M.I., Meekan, M.G., Mumby, P. J., Munday, P.L., Öhman, M.C., Pratchett, M.S., Riegl, B., Sano, M., Schmitt, R.J., and Syms, C. (2010) Crucial knowledge gaps in current understanding of climate change impacts on coral reef fishes. Journal of Experimental Biology, 213. pp. 894-900.

Lee, Tristan, Zenger, Kyall R., Close, Robert L., Jones, Marilyn, and Phalen, David N. (2010) Defining spatial genetic structure and management units for vulnerable koala (Phascolarctos cinereus) populations in the Sydney region, Australia. Wildlife Research, 37 (2). pp. 156-165.

Heupel, Michelle R., Williams, Ashley J., Welch, David J., Davies, Campbell R., Penny, Ann, Kritzer, Jacob P., Marriott, Ross J., and Mapstone, Bruce D. (2010) Demographic characteristics of exploited tropical lutjanids: a comparative analysis. Fishery Bulletin, 108 (4). pp. 420-432.

Heupel, Michelle R., Williams, Ashley, Welch, David J., Davies, Campbell R., Adams, Samantha, Carlos, Gary, and Mapstone, Bruce D. (2010) Demography of a large exploited grouper, Plectropomus laevis: implications for fisheries management. Marine and Freshwater Research, 61 (2). pp. 184-195.

Bondarenko, Olga, Kininmonth, Stuart, and Kingsford, Michael (2010) Deployment of wireless sensor network to study oceanography of coral reefs. International Journal on Advances in Networks and Services, 3 (1 and 2). pp. 92-102.

Moorhead, Jonathan A., and Zeng, Chaoshu (2010) Development of captive breeding techniques for marine ornamental fish: a review. Reviews in Fisheries Science, 18 (4). pp. 315-343.

Donelson, J.M., Munday, P.L., McCormick, M.I., Pankhurst, N.W., and Pankhurst, P.M. (2010) Effects of elevated water temperature and food availability on the reproductive performance of a coral reef fish. Marine Ecology Progress Series, 401. pp. 233-243.

Grutter, A.S., Cribb, T.H., McCallum, H., Pickering, J.L., and Mccormick, M.I. (2010) Effects of parasites on larval and juvenile stages of the coral reef fish Pomacentrus moluccensis. Coral Reefs, 29 (1). pp. 31-40.

Nelson, Paul N., Webb, Michael J., Orrell, Ian, van Rees, Harm, Banabas, Murom, Berthelsen, Suzanne, Sheaves, Marcus, Bakani, Felix, Pukam, Otto, Hoare, Michael, Griffiths, William, King, Graham, Carberry, Peter, Pipai, Rachel, McNeill, Ann, Meekers, Petra, Lord, Simon, Butler, James, Pattison, Tony, Armour, John, and Dewhurst, Charles (2010) Environmental sustainability of oil palm cultivation in Papua New Guinea. ACIAR Technical Reports, 75 . Australian Centre for International Agricultural Research, Canberra, ACT, Australia.

Connolly, Sean R., and Baird, Andrew H. (2010) Estimating dispersal potential for marine larvae: dynamic models applied to scleractinian corals. Ecology, 91 (12). pp. 3572-3583.

Goatley, Christopher H.R., Bellwood, David R., and Bellwood, Orpha (2010) Fishes on coral reefs: changing roles over the past 240 million years. Paleobiology, 36 (3). pp. 415-427.

Farnsworth, Claire A, Bellwood, David, and Van Herwerden, Lynne (2010) Genetic structure across the GBR: evidence from short-lived gobies. Marine Biology, 157 (5). pp. 945-953.

Catalano, Sarah R., and Hutson, Kate S. (2010) Harmful parasitic crustaceans infecting wild arripids: A potential threat to southern Australian finfish aquaculture. Aquaculture, 303 (1-4). pp. 101-104.

West, Roianne, Usher, Kim, and Foster, Kim (2010) Increased numbers of Australian Indigenous nurses would make a significant contribution to 'closing the gap' in Indigenous health: what is getting in the way? Contemporary Nurse, 36 (1-2). pp. 121-130.

McCormick, M.I., Moore, J.A.Y., and Munday, P.L. (2010) Influence of habitat degradation on fish replenishment. Coral Reefs, 29 (3). pp. 537-546.

Walther, Benjamin D., Kingsford, Michael J., O'Callaghan, Mark D., and McCulloch, Malcolm T. (2010) Interactive effects of ontogeny, food ration and temperature on elemental incorporation in otoliths of a coral reef fish. Environmental Biology of Fishes, 89 (3-4). pp. 441-451.

Owens, L., Liessmann, L., La Fauce, K., Nyguyen, T., and Zeng, C. (2010) Intranuclear bacilliform virus and hepatopancreatic parvovirus (PmergDNV) in the mud crab Scylla serrata (Forskal) of Australia. Aquaculture, 310 (1-2). pp. 47-51.

Souter, P., Willis, B.L., Bay, L.K., Caley, M.J., Muirhead, A., and van Oppen, M.J.H. (2010) Location and disturbance affect population genetic structure in four coral species of the genus Acropora on the Great Barrier Reef. Marine Ecology Progress Series, 416. pp. 35-45.

Fuiman, Lee A., Meekan, Mark G., and McCormick, Mark I. (2010) Maladaptive behavior reinforces a recruitment bottleneck in newly settled fishes. Oecologia, 164 (1). pp. 99-108.

Johnson, Johanna E., and Welch, David J. (2010) Marine fisheries management in a changing climate: a review of vulnerability and future options. Reviews in Fisheries Science, 18 (1). pp. 106-124.

Neaves, L.E., Zenger, K.R., Cooper, D.W., and Eldridge, M.D.B. (2010) Molecular detection of hybridization between sympatric kangaroo species in south-eastern Australia. Heredity, 104. pp. 502-512.

de Nys, Rocky, Guenther, Jana, and Uriz, Maria (2010) Natural control of fouling in biofouling. In: Dürr, Simone, and Thomason, Jeremy C., (eds.) Biofouling. Wiley-Blackwell, UK, pp. 109-120.

Kingsford, Michael J., and Carlson, Ian J. (2010) Patterns of distribution and movement of fishes, Ophthalmolepis lineolatus and Hypoplectrodes maccullochi, on temperate rocky reefs of south eastern Australia. Environmental Biology of Fishes, 88 (2). pp. 105-118.

Seneca, Francois O., Forêt , Sylvain, Ball, Eldon E., Smith-Keune, Carolyn, Miller, David J., and van Oppen, Madeleine J.H. (2010) Patterns of gene expression in a scleractinian coral undergoing natural bleaching. Marine Biotechnology, 12 (5). pp. 594-604.

Edmunds, Richard C., Van Herwerden, Lynne, and Fulton, Christopher J. (2010) Population-specific locomotor phenotypes are displayed by barramundi, Lates calcarifer, in response to thermal stress. Canadian Journal of Fisheries and Aquatic Sciences, 67 (7). pp. 1068-1074.

Bell, Johann, Batty, Mike, Ganachaud, Alex, Gehrke, Peter, Hobday, Alistair, Hoegh-Guldberg, Ove, Johnson, Johanna, Le Borgne, Robert, Lehodey, Patrick, Lough, Janice, Pickering, Tim, Pratchett, Morgan, Sheaves, Marcus, and Waycott, Michelle (2010) Preliminary assessment of the effects of climate change on fisheries and aquaculture in the Pacific. In: Gillett, Robert, (ed.) Fisheries in the Economies of the Pacific Island Countries and Territories. Pacific Studies Series . Asian Development Bank, Manila, Philippines, pp. 451-469.

Sale, P.F., Van Lavieren, H., Ablan Lagman, M.C., Atema, J., Butler, M., Fauvelot, C., Hogan, J.D., Jones, G.P., Lindeman, K.C., Paris, C.B., Steneck, R., and Stewart, H.L. (2010) Preserving Reef Connectivity: a Handbook for Marine Protected Area Managers. Report. Coral Reef Targeted Research &Capacity Building for Management Project (CRTR).

Luter, Heidi M., Whalan, Stephen, and Webster, Nicole S. (2010) Prevalence of tissue necrosis and brown spot lesions in a common marine sponge. Marine and Freshwater Research, 61 (4). pp. 484-489.

Pirozzi, Igor, Booth, Mark A., and Allan, Geoff L. (2010) Protein and energy utilization and the requirements for maintenance in juvenile mulloway (Argyrosomus japonicus). Fish Physiology and Biochemistry, 36 (1). pp. 109-121.

Catalano, Sarah R., Hutson, Kate S., Ratcliff, Rodney M., and Whittington, Ian D. (2010) Redescriptions of two species of microcotylid monogeneans from three arripid hosts in southern Australian waters. Systematic Parasitology, 76 (3). pp. 211-222.

Munday, Philip L., Dixson, Danielle L., McCormick, Mark I., Meekan, Mark, Ferrari, Maud C.O., and Chivers, Douglas P. (2010) Replenishment of fish populations is threatened by ocean acidification. Proceedings of the National Academy of Sciences of the United States of America, 107 (29). pp. 12930-12934.

Hoey, A.S. (2010) Size matters: macroalgal height influences the feeding response of coral reef herbivores. Marine Ecology Progress Series, 411. pp. 299-302.

Holmes, Thomas H., and McCormick, Mark I. (2010) Smell, learn and live: the role of chemical alarm cues in predator learning during early life history in a marine fish. Behavioural Processes, 83 (3). pp. 299-305.

Welch, David J., Mapstone, Bruce D., Davies, Campbell C., and Russ, Garry R. (2010) Spatial and fishing effects on sampling gear biases in a tropical reef line fishery. Marine and Freshwater Research, 61 (10). pp. 1134-1146.

Haapkylä, J., Melbourne-Thomas, J., Flavell, M., and Willis, B.L. (2010) Spatiotemporal patterns of coral disease prevalence on Heron Island, Great Barrier Reef, Australia. Coral Reefs, 29 (4). pp. 1035-1045.

Newman, Stephen J., Wright, Ian W., Rome, Ben M., Mackie, Michael C., Lewis, Paul D., Buckworth, Rik C., Ballagh, Aaron C., Garrett, Rod N., Stapley, Jason, Broderick, Damien, Ovenden, Jennifer R., and Welch, David J. (2010) Stock structure of Grey Mackerel, Scomberomorus semifasciatus (Pisces: Scombridae) across northern Australia, based on otolith stable isotope chemistry. Environmental Biology of Fishes, 89 (3-4). pp. 357-367.

Newton, James R., Smith-Keune, Carolyn, and Jerry, Dean R. (2010) Thermal tolerance varies in tropical and sub-tropical populations of barramundi (Lates calcarifer) consistent with local adaptation. Aquaculture, 308 (Supplement 1). S128-S132.

O'Shea, Owen R,, Kingsford, Michael J., and Seymour, Jamie (2010) Tide-related periodicity of manta rays and sharks to cleaning stations on a coral reef. Marine and Freshwater Research, 61 (1). pp. 65-73.

Templeman, Michelle A., and Kingsford, Michael J. (2010) Trace element accumulation in Cassiopea sp. (Scyphozoa) from urban marine environments in Australia. Marine Environmental Research, 69 (2). pp. 63-72.

Stella, J.S., Jones, G.P., and Pratchett, M.S. (2010) Variation in the structure of epifaunal invertebrate assemblages among coral hosts. Coral Reefs, 29 (4). pp. 957-973.

Pirozzi, I., Booth, M.A., and Allan, G.L. (2010) The interactive effects of dietary protein and energy on feed intake, growth and protein utilization of juvenile mulloway (Argyrosomus japonicus). Aquaculture Nutrition, 16 (1). pp. 61-71.

Charters, Robbie A., Lester, Robert J.G., Buckworth, Rik C., Newman, Stephen J., Ovenden, Jennifer R., Broderick, Damien, Kravchuck, Olena, Ballagh, Aaron, and Welch, David J. (2010) The stock structure of grey mackerel Scomberomorus semifasciatus in Australia as inferred from its parasite fauna. Fisheries Research, 101 (1-2). pp. 94-99.

Baker, Ron, and Sheaves, Marcus (2009) Overlooked small and juvenile piscivores dominate shallow-water estuarine "refuges" in tropical Australia. Estuarine, Coastal and Shelf Science , 85 (4). pp. 618-626.

Duckworth, Alan R., Wolff, Carsten W., and Luter, Heidi (2009) Patterns of abundance and size across varying spatial scales for the coral reef sponge Coscinoderma matthewsi. Marine Ecology Progress Series, 396. pp. 27-33.

Camus, Thomas, Zeng, Chaoshu, and McKinnon, A. David (2009) Egg production, egg hatching success and population increase of the tropical paracalanid copepod, Bestiolina similis (Calanoida: Paracalanidae) fed different microalgal diets. Aquaculture, 297 (1). pp. 169-175.

Elmhirst, Toby, Connolly, Sean R., and Hughes, Terry P. (2009) Connectivity, regime shifts and the resilience of coral reefs. Coral Reefs, 28 (4). pp. 949-957.

Cole, Andrew J, Chong-Seng, Karen, Pratchett, Morgan S., and Jones, Geoffrey P. (2009) Coral-feeding fishes slow progression of black-band disease. Coral Reefs, 28 (4). p. 965.

Hoey, Andrew S., and Bellwood, David R. (2009) Limited functional redundancy in a high diversity system: single species dominates key ecological process on coral reefs. Ecosystems, 12 (8). pp. 1316-1328.

Baird, Andrew H., Guest, James R., and Willis, Bette L. (2009) Systematic and biogeographical patterns in the reproductive biology of scleractinian corals. Annual Review of Ecology, Evolution, and Systematics, 40. pp. 551-571.

Ritchie, S.A., Rapley, L.P. , Williams, C., Johnson, P.H., Larkman, M., Silcock, R.M., Long, S.A., and Russell, R.C. (2009) A lethal ovitrap-based mass trapping scheme for dengue control in Australia: I. Public acceptability and performance of lethal ovitraps. Medical and Veterinary Entomology, 23 (4). pp. 295-302.

Bonin, Mary C., Munday, Philip L., McCormick, Mark I., Srinivasan, Maya, and Jones, Geoffrey P. (2009) Coral-dwelling fishes resistant to bleaching but not to mortality of host corals. Marine Ecology Progress Series, 394. pp. 215-222.

Hoogenboom, Mia O., Connolly, Sean R., and Anthony, Kenneth R.N. (2009) Effects of photoacclimation on the light niche of corals: a process-based approach. Marine Biology, 156 (12). pp. 2493-2503.

Molecular Ecology Resources Primer Development Consortium, , Almany, Glenn R., De Arruda, Maurício P., Arthofer, Wolfgang, Atallah, Z.K., Beissinger, Steven R., Berumen, Michael L., Bogdanowicz, S.M., Brown, S.D., Bruford, Michael W., Burdine, C., Busch, Jeremiah W., Campbell, Nathan R., Carey, D., Carstens, Bryan C., Chu, K.H., Cubeta, Marc A., Cuda, J.P., Cui, Zhaoxia, Datnoff, L.E., Dávila, J.A., Davis, Emily S., Davis, R.M., Diekmann, Onno E., Eizirik, Eduardo, Fargallo, J.A., Fernandes, Fabiano, Fukuda, Hideo, Gale, L.R., Gallagher, Elizabeth, Gao, Yongqiang, Girard, Philippe, Godhe, Anna, Gonçalves, Evonnildo C., Gouveia, Licinia, Grajczyk, Amber M., Grose, M.J., Gu, Zhifeng, Halldén, Christer, Härnström, Karolina, Hemmingsen, Amanda H., Holmes, Gerald, Huang, C.H., Huang, Chuan-chin, Hudman, S.P., Jones, Geoffrey P., Kanetis, Loukas, Karunasagar, Iddya, Karunasagar, Indrani, Keyghobadi, Nusha, Klosterman, S.J., Klug, Page E., Koch, J., Koopman, Margaret M., Köppler, Kirsten, Koshimizu, Eriko, Krumböck, Susanne, Kubisiak, T., Landis, J.B., Lasta, Mario L., Lee, Chow-Yang, Li, Qianqian, Li, Shou-Hsien, Lin, Rong-Chien, Liu, M., Liu, Na, Liu, W.C., Liu, Yuan, Loiseau, A., Luan, Weisha, Maruthachalam, K.K., McCormick, Helen M., Mellick, Rohan, Monnahan, P.J., Morielle-Versute, Eliana, Murray, Tomás E., Narum, Shawn R., Neufeld, Katie, De Nova, P.J.G., Ojiambo, Peter S., Okamoto, Nobuaki, Othman, Ahmad Sofiman, Overholt, W.A., Pardini, Renata, Paterson, Ian G., Patty, Olivia A., Paxton, Robert J., Planes, Serge, Porter, Carolyn, Pratchett, Morgan S., Püttker, Thomas, Rasic, Gordana, Rasool, Bilal, Rey, O., Riegler, Markus, Riehl, C., Roberts, John M.K., Roberts, P.D., Rochel, Elisabeth, Roe, Kevin J., Rossetto, Maurizio, Ruzzante, Daniel E., Sakamoto, Takashi, Saravanan, V., Sarturi, Cladinara Roberts, Schmidt, Anke, Schneider, Maria Paula Cruz, Schuler, Hannes, Serb, Jeanne M., Serrão, Ester T.A., Shi, Yaohua, Silva, Artur, Sin, Y.W., Sommer, Simone, Stauffer, Christian, Strüssmann, Carlos Augusto, Subbarao, K.V., Syms, Craig, Tan, Feng, Tejedor, Eugenio Daniel, Thorrold, Simon R., Trigiano, Robert N., Trucco, María I., Tsuchiya-Jerep, Mirian Tienko Nunes, Vergara, P., van de Vliet, Mirjam S., Wadl, Phillip A., Wang, Aimin, Wang, Hongxia, Wang, R.X., Wang, Xinwang, Wang, Yan, Weeks, Andrew R., Wei, Fuwen, Werner, William J., Wiley, E.O., Williams, D.A., Wilkins, Richard J., Wisely, Samantha M., With, Kimberly A., Wu, Danhua, Yao, Cheng-Te, Yau, Cynthia, Yeap, Beng-Keok, Zhai, Bao-Ping, Zhan, Xiangjiang, Zhang, Guo-Yan, Zhang, S.Y., Zhao, Ru, and Zhu, Lifeng (2009) Permanent genetic resources added to Molecular Ecology Resources Database 1 May 2009–31 July 2009. Molecular Ecology Resources, 9 (6). pp. 1460-1466.

Kosnik, Mathew, Hua, Quan, Kaufman, Darrell S., and Wust, Raphael A. (2009) Taphonomic bias and time-averaging in tropical molluscan death assemblages: differential shell half-lives in Great Barrier Reef sediment. Paleobiology, 35 (4). pp. 565-586.

Scardino, A.J., Zhang, H., Cookson, D.J, Lamb, R.N, and de Nys, R. (2009) The role of nano-roughness in antifouling. Biofouling, 25 (8). pp. 757-767.

Bellwood, David R., and Meyer, Christopher P. (2009) Endemism and evolution in the Coral Triangle: a call for clarity. Journal of Biogeography, 36 (10). pp. 2010-2012.

van Herwerden, Lynne, Aspden, William J., Newman, Stephen J., Pegg, Graham G., Briskey, Leica, and Sinclair, William (2009) A comparison of the population genetics of Lethrinus miniatus and Lutjanus sebae from the east and west coasts of Australia: evidence for panmixia and isolation. Fisheries Research, 100 (2). pp. 148-155.

Walker, Stefan P.W., and McCormick, Mark I. (2009) Sexual selection explains sex-specific growth plasticity and positive allometry for sexual size dimorphism in a reef fish. Proceedings of the Royal Society of London Series B, Biological Sciences, 276 (1671). pp. 3335-3343.

McCormick, Mark I. (2009) Behaviourally Mediated Phenotypic Selection in a Disturbed Coral Reef Environment. PLoS ONE, 4 (9). p. 7096.

Stockwell, Brian, Jadloc, Claro Renato L., Abesamis, Rene A., Alcala, Angel C., and Russ, Garry R. (2009) Trophic and benthic responses to no-take marine reserve protection in the Philippines. Marine Ecology Progress Series, 389. pp. 1-15.

Cooper, T.F., Gilmour, J.P., and Fabricius, K.E. (2009) Bioindicators of changes in water quality on coral reefs: review and recommendations for monitoring programmes. Coral Reefs, 28 (3). pp. 589-606.

Edmunds, Richard C., Hillersøy, Grethe, Momigliano, Paolo, and Van Herwerden, Lynne (2009) Classic approach revitalizes genomics: complete characterization of a candidate gene for thermal adaptation in two coral reef fishes. Marine Genomics, 2 (3-4). pp. 215-222.

Cowman, Peter F., Bellwood, David R., and van Herwerden, Lynne (2009) Dating the evolutionary origins of wrasse lineages (Labridae) and the rise of trophic novelty on coral reefs. Molecular Phylogenetics and Evolution, 52 (3). pp. 621-631.

Munday, Philip L., Donelson, Jennifer M., Dixson, Danielle L. , and Endo, Geoff G.K. (2009) Effects of ocean acidification on the early life history of a tropical marine fish. Proceedings of the Royal Society of London Series B, Biological Sciences, 276 (1671). pp. 3275-3283.

Lemberget, T., McCormick, M.I., and Wilson, D.T. (2009) Environmental influences on the replenishment of lizardfish (family Synodontidae) in Caribbean Panama. Coral Reefs, 28 (3). pp. 737-750.

Gotelli, Nicholas J., Anderson, Marti J., Hector, T. Arita, Chao, Anne, Colwell, Robert K., Connolly, Sean R., Currie, David J., Dunn, Robert R., Graves, Gary R., Green, Jessica L., Grytnes, John-Arvid, Jiang, Yi-Huei, Jetz, Walter, Lyons, S. Kathleen, McCain, Christy M., Magurran, Anne E., Rahbek, Carsten, Rangel, Thiago F.L.V.B., Soberón, Jorge, Webb, Campbell O., and Willig, Michael R. (2009) Patterns and causes of species richness: a general simulation model for macroecology. Ecology Letters, 12 (9). pp. 873-886.

Hobbs, J-P.A., Frisch, A.J., Hamanaka, T., McDonald, C.A., Gilligan, J.J., and Neilson, J. (2009) Seasonal aggregation of juvenile whale sharks (Rhincodon typus) at Christmas Island, Indian Ocean. Coral Reefs, 28 (3). p. 577.

Abrantes, Kátya, and Sheaves, Marcus (2009) Sources of nutrition supporting juvenile penaeid prawns in an Australian dry tropics estuary. Marine and Freshwater Research, 60 (9). pp. 949-959.

Nguyen, Thuy T.T., Davy, F. Brian, Rimmer, Michael A., and De Silva, Sena S. (2009) Use and exchange of genetic resources of emerging species for aquaculture and other purposes. Reviews in Aquaculture, 1 (3-4). pp. 260-274.

Pirozzi, Igor, and Booth, Mark A. (2009) The effect of temperature and body weight on the routine metabolic rate and postprandial metabolic response in mulloway, Argyrosomus japonicus. Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 154 (1). pp. 110-118.

Sato, Yui, Bourne, David G., and Willis, Bette L. (2009) Dynamics of seasonal outbreaks of black band disease in an assemblage of Montipora species at Pelorus Island (Great Barrier Reef, Australia). Proceedings of the Royal Society of London Series B, 276. pp. 2795-2803.

Watson, Sue-Ann, Southgate, Paul C., Tyler, Paul A., and Peck, Lloyd (2009) Early larval development of the Sydney rock oyster Saccostrea glomerata under near-future predictions of CO2 driven ocean acidification. Journal of Shellfish Research, 28 (3). pp. 431-437.

Slater, Matthew J., and Carton, Alexander G. (2009) Effect of sea cucumber (Australostichopus mollis) grazing on coastal sediments impacted by mussel farm deposition. Marine Pollution Bulletin, 58 (8). pp. 1123-1129.

Kroon, F.J., Munday, P.L., and Westcott, D.A. (2009) Equivalent whole-body concentrations of 11-ketotestosterone in female and male coral goby (Gobiodon erythrospilus), a bi-directional sex-changing fish. Journal of Fish Biology, 75 (3). pp. 685-692.

Carter, A.B., Williams, A.J., and Russ, G.R. (2009) Increased accuracy of batch fecundity estimates using oocyte stage ratios in Plectropomus leopardus. Journal of Fish Biology, 75 (3). pp. 716-722.

Munday, Philip L., Crawley, Natalie, and Nilsson, Göran E. (2009) Interacting effects of elevated temperature and ocean acidification on the aerobic performance of coral reef fishes. Marine Ecology Progress Series, 388. pp. 235-242.

Neaves, Linda E., Zenger, Kyall R., Prince, Robert I.T., Eldridge, Mark D.B., and Cooper, Desmond W. (2009) Landscape discontinuities influence gene flow and genetic structure in a large, vagile Australian mammal, Macropus fuliginosus. Molecular Ecology, 18 (16). pp. 3363-3378.

Abrego, David A., van Oppen, Madeleine J.H., and Willis, Bette L. (2009) Onset of algal endosymbiont specificity varies among closely related species of Acropora corals during early ontogeny. Molecular Ecology, 18 (16). pp. 3532-3543.

Baker, Ron, and Sheaves, Marcus (2009) Refugees or ravenous predators: detecting predation on new recruits to tropical estuarine nurseries. Wetlands Ecology and Management, 17 (4). pp. 317-330.

Mamangkey, N. Gustaf F., and Southgate, Paul C. (2009) Regeneration of excised mantle tissue by the silver-lip pearl oyster, Pinctada maxima (Jameson). Fish and Shellfish Immunology, 27 (2). pp. 164-174.

Wu, Xugan, Cheng, Yongxu, Zeng, Chaoshu, Liying, Sui, Southgate, Paul, Zhou, Gang, and Bian, Wenji (2009) Reproductive performance and offspring quality of Chinese mitten crab Eriocheir sinensis (H. Milne-Edwards) females fed an optimized formulated diet and the razor clam Sinonovacula constricta. Aquaculture Research, 40 (12). pp. 1335-1349.

Slater, Matthew J., Jeffs, Andrew G., and Carton, Alexander G. (2009) The use of the waste from green-lipped mussels as a food source for juvenile sea cucumber, Australostichopus mollis. Aquaculture, 292 (3-4). pp. 219-224.

van Herwerden, Lynne, Choat, J. Howard, Newman, Stephen J., Leray, Mattieu, and Hillersoy, Grethe (2009) Complex patterns of population structure and recruitment of Plectropomus leopardus (Pisces: Epinephelidae) in the Indo-West Pacific: implications for fisheries management. Marine Biology, 156 (8). pp. 1595-1607.

Guy, Jeffrey A., Jerry, Dean R., and Rowland, Stuart J. (2009) Heterosis in fingerlings from a diallel cross between two wild strains of silver perch (Bidyanus bidyanus). Aquaculture Research, 40 (11). pp. 1291-1300.

Gagliano, Monica, and McCormick, Mark I. (2009) Hormonally mediated maternal effects shape offspring survival potential in stressful environments. Oecologia, 160 (4). pp. 657-665.

Brierley, Andrew S., and Kingsford, Michael J. (2009) Impacts of climate change on marine organisms and ecosystems. Current Biology, 19 (14). R602-R614.

Zischke, M.T., Cribb, T.H., Welch, D.J., Sawynok, W., and Lester, R.J.G. (2009) Stock structure of blue threadfin Eleutheronema tetradactylum on the Queensland east coast, as determined by parasites and conventional tagging. Journal of Fish Biology, 75 (1). pp. 156-171.

Cooper, Timothy F., and Ulstrup, Karin E. (2009) Mesoscale variation in the photophysiology of the reef building coral Pocillopora damicornis along an environmental gradient. Estuarine, Coastal and Shelf Science , 83 (2). pp. 186-196.

Munday, P.L., Leis, J.M., Lough, J.M., Paris, C.B., Kingsford, M.J., Berumen, M.L., and Lambrechts, J. (2009) Climate change and coral reef connectivity. Coral Reefs, 28 (2). pp. 379-395.

Botsford, L.W., White, J.W., Coffroth, M-A., Paris, C.B., Planes, S., Shearer, T.L., Thorrold, S.R., and Jones, G.P. (2009) Connectivity and resilience of coral reef metapopulations in marine protected areas: matching empirical efforts to predictive needs. Coral Reefs, 28 (2). pp. 327-337.

Almany, G.R., Connolly, S.R., Heath, D.D., Hogan, J.D., Jones, G.P., McCook, L.J., Mills, M., Pressey, R.L., and Williamson, D.H. (2009) Connectivity, biodiversity conservation and the design of marine reserve networks for coral reefs. Coral Reefs, 28 (2). pp. 339-351.

Sheaves, Marcus, and Johnston, Ross (2009) Ecological drivers of spatial variability among fish fauna of 21 tropical Australian estuaries. Marine Ecology Progress Series, 385. pp. 245-260.

Smith-Keune, Carolyn, and Jerry, Dean R. (2009) High levels of intra-specific variation in the NG repeat region of the Pinctada maxima N66 organic matrix protein. Aquaculture Research, 40 (9). pp. 1054-1063.

Cantin, N.E., van Oppen, M.J.H., Willis, B.L., Mieog, J.C., and Negri, A.P. (2009) Juvenile corals can acquire more carbon from high-performance algal symbionts. Coral Reefs, 28 (2). pp. 405-414.

Jones, G.P., Almany, G.R., Russ, G.R., Sale, P.F., Steneck, R.S., Van Oppen, M.J.H., and Willis, B.L. (2009) Larval retention and connectivity among populations of corals and reef fishes: history, advances and challenges. Coral Reefs, 28 (2). pp. 307-325.

Gonzalez Cabello, Alonso, and Bellwood, David R. (2009) Local ecological impacts of regional biodiversity on reef fish assemblages. Journal of Biogeography, 36 (6). pp. 1129-1137.

McCook, L.J., Almany, G.R., Berumen, M.L., Day, J.C., Green, A.L., Jones, G.P., Leis, J.M., Planes, S., Russ, G.R., Sale, P.F., and Thorrold, S.R. (2009) Management under uncertainty: guide-lines for incorporating connectivity into the protection of coral reefs. Coral Reefs, 28 (2). pp. 353-366.

Goatley, Christopher, and Bellwood, David R. (2009) Morphological structure in a reef fish assemblage. Coral Reefs, 28 (2). pp. 1-9.

Jones, G.P., Russ, G.R., Sale, P.F., and Steneck, R.S. (2009) Theme section on “Larval connectivity, resilience and the future of coral reefs”. Coral Reefs, 28 (2). pp. 303-305.

Steneck, R.S., Paris, C.B., Arnold, S.N., Ablan-Lagman, M.C., Alcala, A.C., Butler, M.J., McCook, L.J., Russ, G.R., and Sale, P.F. (2009) Thinking and managing outside the box: coalescing connectivity networks to build region-wide resilience in coral reef ecosystems. Coral Reefs, 28 (2). pp. 367-378.

Cole, A.J., Pratchett, M.S., and Jones, G.P. (2009) Effects of coral bleaching on the feeding response of two species of coral-feeding fish. Journal of Experimental Marine Biology and Ecology, 373. pp. 11-15.

Feary, David A., McCormick, Mark I., and Jones, Geoffrey P. (2009) Growth of reef fishes in response to live coral cover. Journal of Experimental Marine Biology and Ecology, 373 (1). pp. 45-49.

Meyer, Eli, Aglyamova, Galina V., Wang, Shi, Buchanan-Carter, Jade, Abrego, David, Colbourne, John K., Willis, Bette L., and Matz, Mikhail V. (2009) Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx. BMC Genomics, 10 (219). pp. 1-18.

Hoegh-Guldberg, Ove, Hoegh-Guldberg, Hans, Veron, John E., Green, Alison, Gomez, Edgardo D., Lough, Janice, King, Melanie, Ambariyanto , Dr., Hansen, Lara, Cinner, Josh, Dews, Geoff, Russ, Garry, Schuttenberg, Heidi Z., Peñaflor, Eileen L., Eakin, C. Mark, Christensen, Tyler R.L., Abbey, Michael, Areki, Francis, Kosako, Rosemary A., Tewfik, Alexander , and Oliver, Jamie (2009) The Coral Triangle and Climate Change: ecosystems, people and societies at risk. Report. WWF Australia, Sydney, NSW, Australia.

Littman, Raechel A., Willis, Bette L., Pfeffer, Christian, and Bourne, David G. (2009) Diversities of coral-associated bacteria differ with location, but not species, for three acroporid corals on the Great Barrier Reef. FEMS Microbiology Ecology, 68 (2). pp. 152-163.

Abrantes, Kátya, and Sheaves, Marcus (2009) Food web structure in a near-pristine mangrove area of the Australian Wet Tropics. Estuarine, Coastal and Shelf Science, 82 (4). pp. 597-607.

McCormick, Mark I. (2009) Indirect effects of heterospecific interactions on progeny size through maternal stress. Oikos, 118 (5). pp. 744-752.

Pratchett, M.S., Schenk, T.J., Baine, M., Syms, C., and Baird, A.H. (2009) Selective coral mortality associated with outbreaks of Acanthaster planci L. in Bootless Bay, Papua New Guinea. Marine Environmental Research, 67 (4-5). pp. 230-236.

Romano, Nicholas, and Zeng, Chaoshu (2009) Subchronic exposure to nitrite, potassium and their combination on survival, growth, total haemocyte count and gill structure of juvenile blue swimmer crabs, Portunus pelagicus. Ecotoxicology and Environmental Safety, 72 (4). pp. 1287-1295.

de Nys, R., and Guenther, J. (2009) The impact and control of biofouling in marine finfish aquaculture. In: Hellio, Claire, and Yebra, Diego, (eds.) Advances in Marine Antifouling Coatings and Technologies. Woodhead Publishing, Cambridge,UK, pp. 177-221.

Hobbs, Jean-Paul A., Frisch, Ashley J., Allen, Gerald R., and van Herwerden, Lynne (2009) Marine hybrid hotspot at Indo-Pacific biogeographic border. Biology Letters, 5 (2). pp. 258-261.

Donelson, Jennifer M., Munday, Philip L., and McCormick, Mark I. (2009) Parental effects on offspring life histories: when are they important? Biology Letters, 5 (2). pp. 262-265.

Romano, Nicholas, and Zeng, Chaoshu (2009) Evaluating the newly proposed protocol of incorporated potassium in nitrate toxicity experiments at different salinities: a case study with the tiger prawn, Penaeus monodon, juveniles. Aquaculture, 289 (3). pp. 304-309.

Planes, Serge, Jones, Geoffrey P., and Thorrold, Simon R. (2009) Larval dispersal connects fish populations in a network of marine protected areas. Proceedings of the National Academy of Sciences, 106 (14). pp. 5693-5697.

Lober, Malwine, and Zeng, Chaoshu (2009) Effect of microalgae concentration on larval survival, development and growth of an Australian strain of giant freshwater prawn Macrobrachium rosenbergii. Aquaculture, 289 (1). pp. 95-100.

Nankervis, L., and Southgate, P.C. (2009) Enzyme and acid treatment of fish meal for incorporation into formulated microbound diets for barramundi (Lates calcarifer) larvae. Aquaculture Nutrition, 15 (2). pp. 135-143.

Saenz-Agudelo, P., Jones, G.P., Thorrold, S.R., and Planes, S. (2009) Estimating connectivity in marine populations: an empirical evaluation of assignment tests and parentage analysis under different gene flow scenarios. Molecular Ecology, 18 (8). pp. 1765-1776.

Pirozzi, Igor, Booth, Mark A, and Pankhurst, Patricia M. (2009) The effect of stocking density and repeated handling on the growth of juvenile mulloway, Argyrosomus japonicus (Temminck & Schlegel 1843). Aquaculture International, 17 (2). pp. 199-205.

Pirozzi, Igor, and Booth, Mark A. (2009) The routine metabolic rate of mulloway (Argyrosomus japonicus: Sciaenidae) and yellowtail kingfish (Seriola lalandi: Carangidae) acclimated to six different temperatures. Comparative Biochemistry and Physiology: Part A, 152 (4). pp. 586-592.

Mamangkey, N. Gustav F., Acosta-Salmon, Hector, and Southgate, Paul C. (2009) Use of anaesthetics with the silver-lip pearl oyster, Pinctada maxima (Jameson). Aquaculture, 288 (3-4). pp. 280-284.

Kingsford, M.J. (2009) Contrasting patterns of reef utilization and recruitment of coral trout (Plectropomus leopardus) and snapper (Lutjanus carponotatus) at One Tree Island, southern Great Barrier Reef. Coral Reefs, 28 (1). pp. 251-264.

Cole, A.J., Pratchett, M.S., and Jones, G.P. (2009) Coral-feeding wrasse scars massive Porites colonies. Coral Reefs, 28 (1). p. 207.

Hoogenboom, Mia O., and Connolly, Sean R. (2009) Defining fundamental niche dimensions of corals: synergistic effects of colony size, light, and flow. Ecology, 90 (3). pp. 767-780.

Bonaldo, Roberta Martini, and Bellwood, David R. (2009) Dynamics of parrotfish grazing scars. Marine Biology, 156 (4). pp. 771-777.

Howells, E.J., van Oppen, M.J.H., and Willis, B.L. (2009) High genetic differentiation and cross-shelf patterns of genetic diversity among Great Barrier Reef populations of Symbiodinium. Coral Reefs, 28 (1). pp. 215-225.

Holmes, Thomas H., and McCormick, Mark I. (2009) Influence of prey body characteristics and performance on predator selection. Oecologia, 159 (2). pp. 401-413.

Bonin, M.C., Srinivasan, M., Almany, G.R., and Jones, G.P. (2009) Interactive effects of interspecifc competition and microhabitat on early post-settlement survival in a coral reef fish. Coral Reefs, 28 (1). pp. 265-274.

Fauvelot, C., Smith-Keune, C., Jerry, D.R., Buston, P.M., and Planes, S. (2009) Isolation and characterization of 16 microsatellite loci in the humbug damselfish, Dascyllus aruanus (family Pomacentridae). Molecular Ecology Resources, 9 (2). pp. 651-653.

Cvitanovic, C., and Bellwood, D.R. (2009) Local variation in herbivore feeding activity on an inshore reef of the Great Barrier Reef. Coral Reefs, 28 (1). pp. 127-133.

Williamson, David, Jones, Geoffrey, Thorrold, Simon R, and Frisch, Ashley J. (2009) Transgenerational marking of marine fish larvae: stable-isotope retention, physiological effects and health issues. Journal of Fish Biology, 74 (4). pp. 891-905.

Sussman, Meir, Mieog, Jos C., Doyle, Jason R., Victor, Steven, Willis, Bette L., and Bourne, David G. (2009) Vibrio Zinc-Metalloprotease causes photoinactivation of coral endosymbionts and coral tissue lesions. PLoS ONE, 4 (2). p. 4511.

Haapkyla, Jessica, Seymour, Adrian S., Barneah, Orit, Brickner, Itzchak, Hennige, Sebastian, Suggett, David, and Smith, David (2009) Association of Waminoa sp. (Acoela) with corals in the Wakatobi Marine Park, South-East Sulawesi, Indonesia. Marine Biology, 156. pp. 1021-1027.

Wismer, Sharon, Hoey, Andrew, and Bellwood, David R. (2009) Cross-shelf benthic community structure on the Great Barrier Reef: relationships between macroalgal cover and herbivore biomass. Marine Ecology Progress Series, 376. pp. 45-54.

Munday, Philip L., Dixson, Danielle L., Donelson, Jennifer M., Jones, Geoffrey P., Pratchett, Morgan S., Devitsina, Galina V., and Døving, Kjell B. (2009) Ocean acidification impairs olfactory discrimination and homing ability of a marine fish. Proceedings of the National Academy of Sciences of the United States of America, 106 (6). pp. 1848-1852.

Cano-Gómez, Ana, Bourne, David G., Hall, Michael R., Owens, Leigh, and Høj, Lone (2009) Molecular identification, typing and tracking of Vibrio harveyi in aquaculture systems: current methods and future prospects. Aquaculture, 287 (1-2). pp. 1-10.

Haynes, Gwilym D., Gongora, Jaime, Nicholas, Frank W., and Zenger, Kyall R. (2009) Rapid identification of maternal lineages in common carp (Cyprinus carpio L.) using real-time PCR and high resolution melt-curve analysis. Aquaculture, 287 (1-2). pp. 59-66.

Camus, Thomas, and Zeng, Chaoshu (2009) The effects of stocking density on egg production and hatching success, cannibalism rate, sex ratio and population growth of the tropical calanoid copepod Acartia sinjiensis. Aquaculture, 287 (1). pp. 145-151.

Kingsford, Michael J., Hughes, Julian M., and Patterson, Heather M. (2009) Otolith chemistry of the non-dispersing reef fish Acanthochromis polyacanthus: cross-shelf patterns from the central Great Barrier Reef. Marine Ecology Progress Series, 377. pp. 279-288.

Palmer, Caroline V., Roth, Melissa S., and Gates, Ruth D. (2009) Red fluorescent protein responsible for pigmentation in Trematode-infected Porites compressa tissues. Biological Bulletin, 216 (1). pp. 68-74.

Lemberget, Tove, and McCormick, Mark I. (2009) Replenishment success linked to fluctuating asymmetry in larval fish. Oecologia, 159 (1). pp. 83-93.

Morita, Masaya, Iguchi, Akira, and Takemura, Akihiro (2009) Roles of calmodulin and calcium/calmodulin-dependent protein kinase in flagellar motility regulation in the coral Acropora digitifera. Marine Biotechnology, 11 (1). pp. 118-123.

Hernaman, V., Probert, P.K., and Robbins, W.D. (2009) Trophic ecology of coral reef gobies: interspecific, ontogenetic, and seasonal comparison of diet and feeding intensity. Marine Biology, 156 (3). pp. 317-330.

Smith, Greg G., Hall, Michael W., and Salmon, Matthew (2009) Use of microspheres, fresh and microbound diets to ascertain dietary path, component size, and digestive gland functioning in phyllosoma of the spiny lobster Panulirus ornatus. New Zealand Journal of Marine and Freshwater Research, 43 (1). pp. 205-215.

Holme, May-Helen, Zeng, Chaoshu, and Southgate, Paul C. (2009) A review of recent progress toward development of a formulated microbound diet for mud crab, Scylla serrata, larvae and their nutritional requirements. Aquaculture, 286 (3). pp. 164-175.

Heupel, M.R., Williams, A.J., Welch, D.J., Ballagh, A., Mapstone, B.D., Carlos, G., Davies, C., and Simpfendorfer, C.A. (2009) Effects of fishing on tropical reef associated shark populations on the Great Barrier Reef. Fisheries Research, 95 (2). pp. 350-361.

Lind, Curtis E., Evans, Brad S., Knauer, Jens, Taylor, Joseph J.U., and Jerry, Dean R. (2009) Decreased genetic diversity and a reduced effective population size in cultured silver-lipped pearl oysters (Pinctada maxima). Aquaculture, 286 (1-2). pp. 12-19.

Scardino, A.J., Hudleston, D., Peng, Z., Paul, N.A., and de Nys, R. (2009) Biomimetic characterisation of key surface parameters for the development of fouling resistant materials. Biofouling, 25 (1). pp. 83-93.

Gershwin, Lisa-ann, and Dabinett, Karen (2009) Comparison of eight types of protective clothing against Irukandji jellyfish stings. Journal of Coastal Research, 25 (1). pp. 117-130.

Williams, Ashley J., Davies, Campbell R., Mapstone, Bruce D., Currey, Leanne M., Welch, David J., Begg, Gavin, A., Ballagh, Aaron C., Choat, J. Howard, Murchie, Cameron D., and Simpfendorfer, Colin A. (2009) Age-based demography of humpback grouper Cromileptes altivelis: implications for fisheries management and conservation. Endangered Species Research, 9 (1). pp. 67-79.

Littman, Raechel A., Willis, Bette L., and Bourne, David G. (2009) Bacterial communities of juvenile corals infected with different Symbiodinium (dinoflagellate) clades. Marine Ecology Progress Series, 389. pp. 45-59.

McCormick, M.I., and Gagliano, M. (2009) Carry-over effects - the importance of a good start. In: Proceedings of the 11th International Coral Reef Symposium, Ft. Lauderdale, Florida, July 2008. From: 11th International Coral Reef Symposium 2008, 07 July - 11 July 2008, Fort Lauderdale, FL, USA.

Guenther, Jana, Wright, Anthony D., Burns, Kathryn, and de Nys, Rocky (2009) Chemical antifouling defences of sea stars: effects of the natural products hexadecanoic acid, cholesterol, lathosterol and sitosterol. Marine Ecology Progress Series, 385. pp. 137-149.

Lloyd, Ray, Alford, Ross A., and Schwarzkopf, Lin (2009) Chemical discrimination among predators by lizards: responses of three skink species to the odours of high and low-threat varanid predators. Austral Ecology, 34. pp. 50-54.

Puill-Stephan, Eneour, Willis, Bette L., van Herwerden, Lynne, and van Oppen, Madeleine JH (2009) Chimerism in wild adult populations of the broadcast spawning coral Acropora millepora on the Great Barrier Reef. PLoS ONE, 4 (1). p. 7751.

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Edmunds, Richard C., van Herwerden, Lynne, Smith-Keune, Carolyn, and Jerry, Dean R. (2009) Comparative characterization of a temperature responsive gene (lactate dehydrogenase-B, ldh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus. International Journal of Biological Sciences, 5 (6). pp. 558-569.

Edmunds, Richard C., van Herwerden, Lynne, Smith-Keune, Carolyn, and Jerry, Dean R. (2009) Comparative characterization of a temperature responsive gene (lactatedehydrogenase-B, ldh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus. International Journal of Biological Sciences, 5 (6). pp. 558-569.

Sheaves, Marcus (2009) Consequences of ecological connectivity: the coastal ecosystem mosaic. Marine Ecology Progress Series, 391. pp. 107-115.

Pratchett, M.S., Wilson, S.K., Graham, N.A.J., Munday, P.L., Jones, G.P., and Polunin, N.V.C. (2009) Coral bleaching and consequences for motile reef organisms: past, present and uncertain future effects. In: van Oppen, M.J.H., and Lough, J.M., (eds.) Coral Bleaching: patterns, processes, causes and consequences. Ecological Studies, 205 . Springer, Germany, pp. 139-158.

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Coker, D.J., Pratchett, M.S., and Munday, P.L. (2009) Does body colouration influence predation risk of coral dwelling reef fish in bleached landscapes? In: Proceedings of the 11th Coral Reef Symposium. pp. 1281-1285. From: 11th International Coral Reef Symposium, 7-11 July 2008, Fort Lauderdale, Florida, USA.

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Peplow, L.M., Kingsford, M.J., Seymour, J.E., and Van Oppen, M.J.H. (2009) Eight microsatellite loci for the Irukandji syndrome-causing carybdeid jellyfish, Carukia barnesi (Cubozoa, Cnidaria). Molecular Ecology Resources, 9. pp. 670-672.

Nilsson, Göran E., Crawley, Natalie, Lunde, Ida G., and Munday, Philip L. (2009) Elevated temperature reduces the respiratory scope of coral reef fishes. Global Change Biology, 15 (6). pp. 1405-1412.

Fox, Rebecca J., Sunderland, Tony L., Hoey, Andrew, and Bellwood, David R. (2009) Estimating ecosystem function: contrasting roles of closely related herbivorous rabbitfishes (Siganidae) on coral reefs. Marine Ecology Progress Series, 385. pp. 261-269.

Adams, Lisa M., Cumbo, Vivian, and Takabayashi, Misaki (2009) Exposure to sediment enhances primary acquisition of Symbiodinium by asymbiotic coral larvae. Marine Ecology Progress Series, 377. pp. 179-156.

Baumgartner, Finn A., Motti, Cherie, de Nys, Rocky, and Paul, Nicholas A. (2009) Feeding preferences and host associations of specialist marine herbivores align with quantitative variation in seaweed secondary metabolites. Marine Ecology Progress Series, 396. pp. 1-12.

Walker, Stefan P.W., and McCormick, Mark I. (2009) Fish ears are sensitive to sex change. Biology Letters, 5. pp. 73-76.

Meyer, Eli, Davies, Sarah, Wang, Shi, Willis, Bette L., Abrego, David, Juenger, Thomas E., and Matz, Mikhail V. (2009) Genetic variation in responses to a settlement cue and elevated temperature in the reef-building coral Acropora millepora. Marine Ecology Progress Series, 392. pp. 81-92.

Munday, P. L., Ryen, C.A., McCormick, M. I., and Walker, S.P.W. (2009) Growth acceleration, behaviour and otolith check marks associated with sex change in the wrasse Halichoeres miniatus. Coral Reefs, 28 (3). pp. 623-634.

Page, Cathie A., Baker, David M., Harvell, C Drew, Golbuu, Yimnang, Raymundo, Laurie, Neale, Stephen J., Rosell, Kathryn B., Rypien, Krystal L., Andras, Jason P., and Willis, Bette L. (2009) Influence of marine reserves on coral disease prevalence. Diseases of Aquatic Organisms, 87 (1-2). pp. 135-150.

Horne, John B., McIlwain, Jennifer L., and Van Herwerden, Lynne (2009) Isolation of 15 new polymorphic microsatellite markers from the blue-spine unicornfish Naso unicornis. Conservation Genetics Resources, 2. pp. 1-4.

Baird, Andrew, Birrell, Chico L., Hughes, Terence, McDonald, Abbi, Nojima, Satoshi, Page, Cathie A., Pratchett, Morgan S., and Yamasaki, Hideo (2009) Latitudinal variation in reproductive synchrony in Acropora assemblages: Japan vs. Australia. Galaxea, Journal of Coral Reef Studies, 11 (2). pp. 101-108.

Owens, Leigh, La Fauce, Kathy , Juntunen, Karen, Hayakijkosol, Orachun, and Zeng, Chaoshu (2009) Macrobrachium rosenbergii nodavirus disease (white tail disease) in Australia. Diseases of Aquatic Organisms, 85 (3). pp. 175-180.

Green, Alison L., and Bellwood, David R. (2009) Monitoring Functional Groups of Herbivorous Reef Fishes as Indicators of Coral Reef Resilience: a practical guide for coral reef managers in the Asia Pacific Region. Manual. The International Union for the Conservation of Nature and Natural Resources, Gland, Switzerland.

Gagliano, Monica, Dunlap, Walter C., de Nys, Rocky, and Depczynski, Martial (2009) Ockham’s razor gone blunt: coenzyme Q adaptation and redox balance in tropical reef fishes. Biology Letters, 5 (3). pp. 360-363.

Steicke, C., Jegatheesan, V., and Zeng, C. (2009) Performance of a recirculating tank-based system utilizing floating and submerged filters with a denitrification column for the culture of barramundi (Lates calcarifer). In: Proceedings of the Fourth International Symposium on Southeast Asian Water Environment (4) pp. 253-260. From: Fourth International Symposium on Southeast Asian Water Environment, 6-8 December 2006, Bangkok, Thailand.

Curley, Belinda G., and Gillings, Michael R. (2009) Population connectivity in the temperate damselfish Parma microlepis: analyses of genetic structure across multiple spatial scales. Marine Biology, 156 (3). pp. 381-393.

Frisch, Ashley J., and Hobbs, Jean-Paul A. (2009) Rapid assessment of anemone and anemonefish populations at the Keppel Islands [electronic resource]: a report to the Great Barrier Reef Marine Park Authority. Report. Great Barrier Reef Marine Park Authority, Australia.

Steicke, C.R., Jegatheesan, V., and Zeng, C. (2009) Recirculating aquaculture systems - a review. In: Vigneswaran, S., (ed.) Water and Wastewater Treatment Technologies. Encyclopedia of Life Support Systems , 1-2 . EOLSS, Oxford, UK, pp. 1-25.

Bellwood, David R., and Meyer, Christopher P. (2009) Searching for heat in a marine biodiversity hotspot. Journal of Biogeography, 36. pp. 569-576.

Tziouveli, Vasiliki, and Smith, Greg (2009) Sexual maturity and environmental sex determination in the white-striped cleaner shrimp Lysmata amboinensis. Invertebrate Reproduction and Development, 53 (3). pp. 155-163.

Haapkyla, Jessica, Unsworth, Richard K.F., Seymour, Adrian S., Melbourne-Thomas, Jessica, Flavell, Mike, Willis, Bette L., and Smith, David J. (2009) Spatio-temporal coral disease dynamics in the Wakatobi Marine National Park, South-East Sulawesi, Indonesia. Diseases of Aquatic Organisms, 87 (1-2). pp. 105-115.

Connolly, Sean R, Dornelas, Maria, Bellwood, David R., and Hughes, Terence P (2009) Testing species abundance models: a new bootstrap approach applied to Indo-Pacific coral reefs. Ecology, 90 (11). pp. 3138-3149.

Bell, Johann D., Clua, Eric, Hair, Cathy A., Galzin, Rene, and Doherty, Peter J. (2009) The capture and culture of post-larval fish and invertebrates for the marine ornamental trade. Reviews in Fisheries Science, 17 (2). pp. 223-240.

Carter, Alexandra, Williams, Ashley, Russ, Garry, and Tobin, Andrew (2009) The effects of no-take zoning, region and year on reproductive output of the common coral trout, Plectropomus leopardus. In: Proceedings of the International Marine Conservation Congress Annual Convention. From: International Marine Conservation Congress Annual Convention, 17-24 May 2009, Washington, DC, USA.

Williamson, David H., Jones, Geoffrey P., and Thorrold, Simon R. (2009) An experimental evaluation of transgenerational isotope labelling in a coral reef grouper. Marine Biology, 156. pp. 2517-2525.

Rapley, Luke, Johnson, P.H., Williams, C. R., Silcock, R. M., Larkman, M., Long, S. A., Russel, R. C., and Ritchie, Scott (2009) A lethal ovitrap-based mass trapping scheme for dengue control in Australia: II. Impact on populations of the mosquito Aedes aegypti. Medical and Veterinary Entomology, 23 (4). pp. 303-316.

Kim, Kiho, Page, Cathie A., and Harvell, C. Drew (2009) The role of environment and microorganisms in diseases of corals: overview of DAO Special 5. Diseases of Aquatic Organisms, 87 (1-2). pp. 1-3.

Trip, Elisabeth L., Choat, J. Howard, Wilson, David T., and Robertson, D. Ross (2008) Inter-oceanic analysis of demographic variation in a widely distributed Indo-Pacific coral reef fish. Marine Ecology Progress Series, 373. pp. 97-109.

Dixson, Danielle L. , Jones, Geoffrey P., Munday, Philip L., Planes, Serge, Pratchett, Morgan S., Srinivasan, Maya, Syms, Craig, and Thorrold, Simon R. (2008) Coral reef fish smell leaves to find island homes. Proceedings of the Royal Society of London Series B, Biological Sciences, 275. pp. 2831-2839.

Palmer, Caroline V., Mydlarz, Laura D., and Willis, Bette L. (2008) Evidence of an inflammatory-like response in non-normally pigmented tissues of two scleractinian corals. Proceedings of the Royal Society of London Series B, Biological Sciences, 275 (1652). pp. 2687-2693.

de Paula Silva, Pedro H., McBride, S., de Nys, Rocky, and Paul, Nicholas (2008) Integrating filamentous 'green tide' algae into tropical pond-based aquaculture. Aquaculture, 284 (1-4). pp. 74-80.

Collins, Angela B., Heupel, Michelle R., and Simpfendorfer, Colin A. (2008) Spatial distribution and long-term movement patterns of cownose rays Rhinoptera bonasus within an estuarine river. Estuaries and Coasts, 31 (6). pp. 1174-1183.

Whalan, S., Ettinger-Epstein, P., and de Nys, R. (2008) The effect of temperature on larval pre-settlement duration and metamorphosis for the sponge, Rhopaloeides odorabile. Coral Reefs, 27 (4). pp. 783-786.

Sheaves, Marcus, Duc, Nguyen Huu , and Khoa, Nguyen Xuan (2008) Ecological attributes of a tropical river basin vulnerable to the impacts of clustered hydropower developments. Marine and Freshwater Research, 59 (11). pp. 971-986.

Carlson, John K., Heupel, Michelle R., Bethea, Dana M., and Hollensead, Lisa D. (2008) Coastal habitat use and residency of juvenile Atlantic sharpnose sharks (Rhizoprionodon terraenovae). Estuaries and Coasts, 31 (5). pp. 931-940.

Horne, John B., van Herwerden, Lynne, Choat, J. Howard, and Robertson, D.R. (2008) High population connectivity across the Indo-Pacific: congruent lack of phylogeographic structure in three reef fish congeners. Molecular Phylogenetics and Evolution, 49 (2). pp. 629-638.

Kosnik, Matthew A., Kaufman, Darrell S., and Hua, Quan (2008) Identifying outliers and assessing the accuracy of amino acid racemization measurements for geochronology: I. Age calibration curves. Quaternary Geochronology, 3 (4). pp. 308-327.

Kosnik, Matthew A., and Kaufman, Darrell S. (2008) Identifying outliers and assessing the accuracy of amino acid racemization measurements for geochronology: II. Data screening. Quaternary Geochronology, 3 (4). pp. 328-341.

Abrantes, Katya, and Sheaves, Marcus (2008) Incorporation of terrestrial wetland material into aquatic food webs in a tropical estuarine wetland. Estuarine, Coastal and Shelf Science , 80 (3). pp. 401-412.

Madin, Joshua S., O'Donnell, Michael J., and Connolly, Sean R. (2008) Climate-mediated mechanical changes to post-disturbance coral assemblages. Biology Letters, 4 (5). pp. 490-493.

Abrego, David, Ulstrup, Karin E., Willis, Bette L., and van Oppen, Madeleine J.H. (2008) Species-specific interactions between algal endosymbionts and coral hosts define their bleaching response to heat and light stress. Proceedings of the Royal Society of London Series B, Biological Sciences, 275 (1648). pp. 2273-2282.

Dornelas, Maria, and Connolly, Sean (2008) Multiple modes in a coral species abundance distribution. Ecology Letters, 11 (10). pp. 1008-1016.

Belmaker, Jonathan, Ziv, Yaron, Shashar, Nadav, and Connolly, Sean R. (2008) Regional variation in the hierarchical partitioning of diversity in coral-dwelling fishes. Ecology, 89 (10). pp. 2829-2840.

Whalan, S., Ettinger-Epstein, P., Battershill, C., and de Nys, R. (2008) Larval vertical migration and hierarchical selectivity of settlement in a brooding marine sponge. Marine Ecology Progress Series, 368. pp. 145-154.

Littman, Raechel A., van Oppen, Madeleine J.H., and Willis, Bette L. (2008) Methods for sampling free-living Symbiodinium (zooxanthellae) and their distribution and abundance at Lizard Island (Great Barrier Reef). Journal of Experimental Marine Biology and Ecology, 364 (1). pp. 48-53.

Paul, Nicholas, and de Nys, Rocky (2008) Promise and pitfalls of locally abundant seaweeds as biofilters for integrated aquaculture. Aquaculture, 281 (1-4). pp. 49-55.

Steneck, Robert H., Bustamante, Rodrigo H., Dayton, Paul K., Jones, Geoffrey P., and Hobday, Alistair J. (2008) Current status and future trends in kelp forest ecosystems. In: Polunin, Nicholas V.C., (ed.) Aquatic Ecosystems: trends and global prospects. Cambridge University Press, Cambridge, UK, pp. 226-241.

Cole, Andrew J., Pratchett, Morgan S., and Jones, Geoffrey P. (2008) Diversity and functional importance of coral-feeding fishes on tropical coral reefs. Fish and Fisheries, 9. pp. 286-307.

Phelan, M.J., Gribble, N.A., and Garrett, R.N. (2008) Fishery biology and management of Protonibea diacanthus (Sciaenidae) aggregations in far Northern Cape York Peninsula waters. Continental Shelf Research, 28 (16). pp. 2143-2151.

Grutter, A.S., Pickering, J.L., McCallum, H., and McCormick, M.I. (2008) Impact of micropredatory gnathiid isopods on young coral reef fishes. Coral Reefs, 27 (3). pp. 655-661.

Fox, R.J., and Bellwood, D. R. (2008) Remote video bioassays reveal the potential feeding impact of the rabbitfish Siganus canaliculatus (f: Siganidae) on an inner-shelf reef of the Great Barrier Reef. Coral Reefs, 27 (3). pp. 605-615.

Graham, E.M., Baird, A.H., and Connolly, S.R. (2008) Survival dynamics of scleractinian coral larvae and implications for dispersal. Coral Reefs, 27 (3). pp. 529-539.

Cooper, Timothy F., Ridd, Peter V., Ulstrup, Karin E., Humphrey, Craig, Slivokoff, Matthew, and Fabricius, Katharina E. (2008) Temporal dynamics in coral bioindicators for water quality on coastal coral reefs of the Great Barrier Reef. Marine and Freshwater Research, 59 (8). pp. 703-716.

Work, Thierry M., Richardson, Laurie L., Reynolds, Taylor L., and Willis, Bette L. (2008) Biomedical and veterinary science can increase our understanding of coral disease. Journal of Experimental Marine Biology and Ecology, 362 (2). pp. 63-70.

Camus, Thomas, and Zeng, Chaoshu (2008) Effects of photoperiod on egg production and hatching success, naupliar and copepodite development, adult sex ratio and life expectancy of the tropical calanoid copepod Acartia sinjiensis. Aquaculture, 280 (1-4). pp. 220-226.

Kvingedal, Renate, Evans, Bradley S., Taylor, Joseph J.U., Knauer, Jens, and Jerry, Dean R. (2008) Family by environment interactions in shell size of 43-day old silver-lip pearl oyster (Pinctada maxima), five families reared under different nursery conditions. Aquaculture, 279 (1-4). pp. 23-28.

Renema, W., Bellwood, D.R., Braga, J.C., Bromfield, K., Hall, R., Johnson, K.G., Lunt, P., Meyer, C.P., McMonagle, L.B., Morley, R.J., O'Dea, A., Todd, J.A., Wesselingh, F.P., Wilson, M.E.J., and Pandlofi, J.M. (2008) Hopping hotspots: global shifts in marine biodiversity. Science, 321 (5889). pp. 654-657.

Ettinger-Epstein, Piers, and Kingsford, Michael J. (2008) Effects of the El Nino southern oscillation on Turbo torquatus (Gastropoda) and their kelp habitat. Austral Ecology, 33 (5). pp. 594-606.

Gershwin, Lisa-ann, and Dawes, Peter (2008) Preliminary observations on the response of Chironex fleckeri (Cnidaria: Cubozoa: Chirodropida) to different colors of light. Biological Bulletin, 215 (1). pp. 57-62.

Boyle, M.C., and Limpus, C.J. (2008) The stomach contents of post-hatchling green and loggerhead sea turtles in the southwest Pacific: an insight into habitat association. Marine Biology, 155 (2). pp. 233-241.

Sofonia, Jeremy J., and Anthony, Kenneth R.N. (2008) High-sediment tolerance in the reef coral Turbinaria mesenterina from the inner Great Barrier Reef lagoon (Australia). Estuarine, Coastal and Shelf Science , 78 (4). pp. 748-752.

Wellenreuther, Maren, Syms, Craig, and Clements, Kendall D. (2008) Body size and ecological diversification in a sister species pair of triplefin fishes. Evolutionary Ecology, 22 (4). pp. 575-592.

Brown, I.W., Sumpton, W.D., McLennan, M., Welch, D.J., Kirkwood, J., Butcher, A., Mapleston, A., Mayer, D., Begg, G., Campbell, M., Halliday, I., and Sawynok, W. (2008) National Strategy for the Survival of Released Line-Caught Fish: tropical reef species (FRDC 2003/019). Report. Department of Primary Industries and Fisheries.

Russ, Garry R., Cheal, Alistair J., Dolman, Andrew M., Emslie, Michael J., Evans, Richard D., Miller, Ian, Sweatman, Hugh, and Williamson, David H. (2008) Rapid increase in fish numbers follows creation of world's largest marine reserve network. Current Biology, 18 (12). pp. 514-515.

Yeiser, B.G., Heupel, M.R., and Simpfendorfer, C.A. (2008) Occurrence, home range and movement patterns of juvenile bull (Carcharhinus leucas) and lemon (Negaprion brevirostris) sharks within a Florida estuary. Marine and Freshwater Research, 59 (6). pp. 489-501.

Frisch, Ashley J. (2008) Social organisation and den utilisation of painted spiny lobster (Panulirus versicolor) on a coral reef at Northwest Island, Australia. Marine and Freshwater Research, 59 (6). pp. 521-528.

Donelson, Jennifer M., McCormick, Mark I., and Munday, Philip (2008) Parental condition affects early life-history of a coral reef fish. Journal of Experimental Marine Biology and Ecology, 360 (2). pp. 109-116.

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Sussman, Meir, Willis, Bette L., Victor, Steven, and Bourne, David G. (2008) Coral pathogens identified for white syndrome (WS) epizootics in the Indo-Pacific. Public Library of Science ONE , 3 (6). pp. 1-14.

Mapleston, Amos, Welch, David, Begg, Gavin A., McLennan, Mark, Mayer, David, and Brown, Ian (2008) Effect of changes in hook pattern and size on catch rate, hooking location, injury and bleeding for a number of tropical reef fish species. Fisheries Research, 91 (2-3). pp. 203-211.

McCormick, Mark I., and Larson, Johan K. (2008) Effect of hunger on the response to, and the production of, chemical alarm cues in a coral reef fish. Animal Behaviour, 75 (6). pp. 1973-1980.

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Jerry, Dean R. (2008) Phylogeography of the freshwater catfish Tandanus tandanus (Plotosidae): a model species to understand evolution of the eastern Australian freshwater fish fauna. Marine and Freshwater Research, 59 (4). pp. 351-360.

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Wolanski, Eric, Fabricius, Katharina E., Cooper, Timothy F., and Humphrey, Craig (2008) Wet season fine sediment dynamics on the inner shelf of the Great Barrier Reef. Estuarine, Coastal and Shelf Science , 77 (4). pp. 755-762.

Mendell, Jennifer E., Clements, Kendall D., Choat, J. Howard, and Angert, Esther R. (2008) Extreme polyploidy in a large bacterium. Proceedings of the National Academy of Sciences of the United States of America, 105 (18). pp. 6730-6734.

Wong, Marian Y.L., Munday, Philip L., Buston, Peter, and Jones, Geoffrey P. (2008) Fasting or feasting in a fish social hierarchy. Current Biology, 18 (9). R372-R373.

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Penfold, Rose, Grutter, Alexandra S., Kuris, Armand M., McCormick, Mark I., and Jones, Cornor M. (2008) Interactions between juvenile marine fish and gnathiid isopods: predation versus micropredation. Marine Ecology Progress Series, 357. pp. 111-119.

Fox, Rebecca J., and Bellwood, David R. (2008) Direct versus indirect methods of quantifying herbivore grazing impact on a coral reef. Marine Biology, 154 (2). pp. 325-334.

Steger, Doris, Ettinger-Epstein, Piers, Whalan, Stephen, Hentschel, Ute, de Nys, Rocky, Wagner, Michael, and Taylor, Michael W. (2008) Diversity and mode of transmission of ammonia-oxidizing archaea in marine sponges. Environmental Microbiology, 10 (4). pp. 1087-1094.

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Welch, David J., Mapstone, Bruce D., and Begg, Gavin A. (2008) Spatial and temporal variation and effects of changes in management in discard rates from the commercial reef line fishery of the Great Barrier Reef, Australia. Fisheries Research, 90 (1-3). pp. 247-260.

McGinty, Erin L., Smith-Keune, Carolyn, and Jerry, Dean R. (2008) A high through-put protocol for quantifying nucleic acids in individual microcrustaceans using new generation RNA and DNA specific dyes. Journal of Shellfish Research, 27 (2). pp. 449-455.

Milione, Michael, and Zeng, Chaoshu (2008) The effects of temperature and salinity on population growth and egg hatching success of the tropical calanoid copepod, Acartia sinjiensis. Aquaculture, 275 (1-4). pp. 116-123.

Maynard, Jeff A., Turner, Peter, Anthony, Kenneth R.N., Baird, Andrew H., Berkelmans, Ray, Eakin, C. Mark, Johnson, Johanna, Marshall, Paul A., Packer, Gareck R., Rea, Anthony, and Willis, Bette L. (2008) ReefTemp: an interactive monitoring system for coral bleaching using high-resolution SST and improved stress predictors. Geophysical Research Letters, 35. pp. 1-5.

Simpfendorfer, Colin Ashley, Heupel, Michelle RaNae, and Collins, Angela B. (2008) Variation in the performance of acoustic receivers and its implication for positioning algorithms in a riverine setting. Canadian Journal of Fisheries and Aquatic Sciences, 65 (3). pp. 482-492.

Evans, R.D., Russ, G.R., and Kritzer, J.P. (2008) Batch fecundity of Lutjanus carponotatus (Lutjanidae) and implications of no-take marine reserves on the Great Barrier Reef, Australia. Coral Reefs, 27 (1). pp. 179-189.

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Fabricius, Katharina E., De'Ath, Glenn, Puotinen, Marji Lee, Done, Terry, Cooper, Timothy F., and Burgess, Scott C. (2008) Disturbance gradients on inshore and offshore coral reefs caused by a severe tropical cyclone. Limnology and Oceanography, 53 (2). pp. 690-704.

Konow, Nicolai, Bellwood, David R., Wainwright, Peter C., and Kerr, Alexander M. (2008) Evolution of novel jaw joints promote trophic diversity in coral reef fishes. Biological Journal of the Linnean Society, 93 (3). pp. 545-555.

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Lee, Anne M., Williams, Ashley J., and Southgate, Paul C. (2008) Modelling and comparison of growth of the silver-lip pearl oyster Pinctada maxima (Jameson) (Mollusca: Pteriidae) cultured in West Papua, Indonesia. Marine and Freshwater Research, 59. pp. 22-31.

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Ettinger-Epstein, Piers, Tapiolas, Dianne M., Motti, Cherie A., Wright, Anthony D., Battershill, Christopher N., and de Nys, Rocky (2008) Production of manoalide and its analogues by the sponge Luffariella variabilis is hardwired. Marine Biotechnology, 10 (1). pp. 64-74.

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Evans, R.D. (2008) Assessment of an underwater biopsy probe for collecting teleost fish tissue samples. Marine Ecology Progress Series, 368. pp. 305-308.

de Nys, Rocky, and Ison, Odette (2008) Biofouling. In: Southgate, Paul C., and Lucas, John S., (eds.) The Pearl Oyster. Elsevier, Oxford, UK, pp. 527-553.

Romano, Nicholas, and Zeng, Chaoshu (2008) Blue swimmer crabs: emerging species in Asia. Global Aquaculture Advocate, 11 (3). pp. 34-36.

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Gagliano, Monica, Depczynski, Martial, Simpson, Stephen D., and Moore, James A.Y. (2008) Dispersal without errors: symmetrical ears tune into the right frequency for survival. Proceedings of the Royal Society of London Series B, Biological Sciences, 275 (1634). pp. 527-534.

Beer, Andrew C., and Southgate, Paul C. (2008) Effect of mesh coverings on retention and growth of blacklip pearl oyster (Pinctada margaritifera) spat during early nursery culture. Aquatic Living Resources, 21 (4). pp. 441-445.

Birrell, Chico L., McCook, Laurence J., Willis, Bette L., and Diaz-Pulido, Guillermo A. (2008) Effects of benthic algae on the replenishment of corals and the implications for the resilience of coral reefs. Oceanography and Marine Biology: an annual review, 46. pp. 25-63.

Pratchett, Morgan S., Munday, Philip L., Wilson, Shaun K., Graham, Nicholas A.J., Cinner, Joshua E., Bellwood, David R., Jones, Geoffrey P., Polunin, Nicholas V.C., and McClanahan, Tim R. (2008) Effects of climate-induced coral bleaching on coral-reef fishes - ecological and economic consequences. Oceanography and Marine Biology: an annual review, 46. pp. 251-296.

Munday, P. L., Kingsford, M.J., O'Callaghan, M., and Donelson, J.M. (2008) Elevated temperature restricts growth potential of the coral reef fish Acanthochromis polyacanthus. Coral Reefs, 27 (4). pp. 927-931.

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Whalan, S., de Nys, R., Smith-Keune, C., Evans, B.S., Battershill, C., and Jerry, D.R. (2008) Low genetic variability within and among populations of the brooding sponge Rhopaloeides odorabile on the central Great Barrier Reef. Aquatic Biology, 3 (2). pp. 111-119.

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Gagliano, Monica (2008) On the spot: the absence of predators reveals eyespot plasticity in a marine fish. Behavioral Ecology, 19 (4). pp. 733-739.

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Bellwood, David R., and Fulton, Christopher J. (2008) Sediment-mediated suppression of herbivory on coral reefs: decreasing resilience to rising sea levels and climate change. Limnology and Oceanography, 53 (6). pp. 2695-2701.

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Hobbs, J.P., Choat, J.H., Robbins, W.D., Van Herwerden, Lynne, Feary, D.A., and Ayling, Anthony (2008) Unique fish assemblages at world's southernmost oceanic coral reefs, Elizabeth and Middleton Reefs, Tasman Sea, Australia. Coral Reefs, 27 (1). p. 15.

van Hennekeler, K., Jones, R.E., Skerratt, L.F., Fitzpatrick, L.A., Reid, S.A., and Bellis, G.A. (2008) A comparison of trapping methods for Tabanidae (Diptera) in North Queensland, Australia. Medical and Veterinary Entomology, 22 (1). pp. 26-31.

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Frisch, A.J., Walker, S.P.W., McCormick, M.I., and Solomon-Lane, T.K. (2007) Regulation of protogynous sex change by competition between corticosteroids and androgens: an experimental test using sandperch, Parapercis cylindrica. Hormones and Behavior, 52 (4). pp. 540-545.

Visentini Kitahara, Marcelo (2007) Species richness and distribution of azooxanthellate Scleractinia in Brazil. Bulletin of Marine Science, 81 (3). pp. 497-518.

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Sheaves, Marcus, Johnston, Ross, and Abrantes, Kátya (2007) Fish fauna of dry tropical and subtropical estuarine floodplain wetlands. Marine and Freshwater Research, 58 (10). pp. 931-943.

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McCormick, Mark (2006) Distress a normal part of life for a damsel. Australasian Science, 27. pp. 29-31.

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Romano, Nicholas, and Zeng, Chaoshu (2006) The effects of salinity on the survival, growth and haemolymph osmolality of early juvenile blue swimmer crabs, Portunus pelagicus. Aquaculture, 260. pp. 151-162.

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Nardi, Kim, Newman, Stephen J., Moran, Michael J., and Jones, Geoffrey P. (2006) Vital demographic statistics and management of the baldchin groper (Choerodon rubescens) from the Houtman Abrolhos Islands. Marine and Freshwater Research, 57 (5). pp. 485-496.

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Guenther, J., Southgate, P.C., and de Nys, R. (2006) The effect of age and shell size on accumulation of fouling organisms on the Akoya pearl oyster Pinctada fucata (Gould). Aquaculture, 253 (1). pp. 366-373.

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McCormick, M.I., and Holmes, T.H. (2006) Prey experience of predation influences mortality rates at settlement in a coral reef fish, Pomacentrus amboinensis. Journal of Fish Biology, 68 (3). pp. 969-974.

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Gehrke, Peter, and Sheaves, Marcus (2006) Research Priorities To Sustain Coastal Fisheries Resources In The Great Barrier Reef Region: a scoping study for the Tully-Murray catchment. CSIRO, Canberra.

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Gagliano, M., Kowalewski, S., and McCormick, M.I. (2006) An alternative method for the preservation of tropical fish larvae. Journal of Fish Biology, 68 (2). pp. 634-639.

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Gardiner, Naomi M., and Jones, Geoffrey P. (2005) Habitat specialisation and overlap in a guild of coral reef cardinalfishes (Apogonidae). Marine Ecology Progress Series, 305. pp. 163-175.

Behrensmeyer, Anna K., Fursich, Franz T., Gastaldo, Robert A., Kidwell, Susan M., Kosnik, Matthew A., Kowalewski, Michal, Plotnick, Roy E., Rogers, Raymond R., and Alroy, John (2005) Are the most durable shelly taxa also the most common in the marine fossil record? Paleobiology, 31 (4). pp. 607-623.

Ceccarelli, Daniela M., Jones, Geoffrey P., and McCook, Laurence J. (2005) Effects of territorial damselfish on an algal-dominated coastal coral reef. Coral Reefs, 24 (4). pp. 606-620.

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Fulton, C.J., and Bellwood, D.R. (2004) Wave exposure, swimming performance, and the structure of tropical and temperate reef fish assemblages. Marine Biology, 144 (3). pp. 429-437.

Acosta-Salmon, Hector, Martinez-Fernandez, Erika, and Southgate, Paul C. (2004) A new approach to pearl oyster broodstock selection: can saibo donors be used as future broodstock? Aquaculture, 231 (1 - 4). pp. 205-214.

Beukers-Stewart, B.D., and Jones, G.P. (2004) The influence of prey abundance on the feeding ecology of two piscivorous species of coral reef fish. Journal of Experimental Marine Biology and Ecology, 299 (2). pp. 155-184.

Green, Bridget S., and Fisher, Rebecca (2004) Temperature influences swimming speed, growth and larval duration in coral reef fish larvae. Journal of Experimental Marine Biology and Ecology, 299 (1). pp. 115-132.

McClanahan, T.R., Baird, A.H., Marshall, P.A., and Toscano, M.A. (2004) Comparing bleaching and mortality responses of hard corals between southern Kenya and the Great Barrier Reef, Australia. Marine Pollution Bulletin, 48 (3). pp. 327-335.

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Cruz-Motta, J.J., and Collins, J. (2004) Impacts of dredged material disposal on a tropical soft-bottom benthic assemblage. Marine Pollution Bulletin, 48 (3). pp. 270-280.

Schultz, Ortwin, and Bellwood, David R. (2004) Trigonodon oweni and Asima jugleri are different parts of the same species Trigonodon jugleri, a Chiseltooth Wrasse for the Lower and Middle Miocene in Central Europe (Osteichthyes, Labridae, Trigonodontinae). Annalen des Naturhistorischen Museums in Wien Serie A, 105. pp. 287-305.

Gust, Nick (2004) Variation in the population of protogynous coral reef fishes over tens of kilometres. Canadian Journal of Fisheries and Aquatic Sciences, 61 (2). pp. 205-218.

Walker, Stefan P.W., and McCormick, Mark I. (2004) Otolith-check formation and accelerated growth associated with sex change in an annual protogynous tropical fish. Marine Ecology Progress Series, 266. pp. 201-212.

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Eagle, Janelle V., and Jones, Geoffrey P. (2004) Mimicry in coral reef fishes: ecological and behavioural responses of a mimic to its model. Journal of Zoology, 264 (1). pp. 33-43.

Mackenzie, J.B., Munday, P.L., Willis, B.L., Miller, D.J., and van Oppen, M.J.H. (2004) Unexpected patterns of genetic structuring among locations but not colour morphs in Acropora nasuta (Cnidaria; Scleractinia). Molecular Ecology, 13 (1). pp. 9-20.

Willis, Bette L., Page, Cathie A., and Dinsdale, Elizabeth A. (2004) Coral disease on the Great Barrier Reef. In: Rosenberg, Eugene, and Loya, Yossi, (eds.) Coral Health and Disease. Springer, Berlin, Germany, pp. 69-104.

Wilson, Shaun K. (2004) Growth, mortality and turnover rates of a small detritivorous fish. Marine Ecology Progress Series, 284. pp. 253-259.

Zeng, Chaoshu, Li, Shaojing, and Zeng, Hui (2004) Occurrence of additional Zoea-VI larvae in the mud crab, Scylla paramamosain (Estampador), reared in the laboratory. Hydrobiologia, 529 (1-3). pp. 49-58.

Jerry, D. R., Preston, N., Crocos, P. J., Keys, S., Meadows, J. R. S., and Li, Y. (2004) Parentage determination of Kuruma prawn shrimp Penaeus (Marsupenaeus) japonicus using microsatellite markers. Aquaculture, 235 (1-4). pp. 237-247.

Nguyen, T. T. T., Austin, C. M., Meewan, M. M., Schultz, M. B., and Jerry, D. R. (2004) Phylogeography of the freshwater crayfish Cherax destructor Clark (Parastacidae) in inland Australia: historical fragmentation and recent range expansion. Biological Journal of the Linnean Society, 83 (4). pp. 539-550.

Houston, Wayne, Porter, Gary, Elder, Rod, Black, Robert, and Sheaves, Marcus (2004) Rediscovery of yellow chats (Capricorn Subspecies) on the Fitzroy River Delta Central Queensland. Sunbird, 34 (1). pp. 36-42.

Kritzer, Jacob P. (2004) Sex-specific growth and mortality, spawning season, and female maturation of the Stripey bass (Lutjanus carponotatus) on the Great Barrier Reef. Fishery Bulletin, 102 (1). pp. 94-107.

Claydon, John (2004) Spawning aggregations of coral reef fishes: characteristics, hypotheses, threats and management. Oceanography and Marine Biology: an annual review, 42. pp. 265-301.

Zeidler, Wolfgang, and Gershwin, Lisa-Ann (2004) A new species of Australomedusa (Cnidaria: Hydrozoa: Anthomedusae) from a saline lake in south-western Western Australia. Records of the Western Australian Museum, 22 (2). pp. 109-113.

Elliott, J.P., and Bellwood, D.R. (2003) Alimentary tract morphology and diet in three coral reef fish families. Journal of Fish Biology, 63 (6). pp. 1598-1609.

Munday, Philip L., Eyre, Peter J., and Jones, Geoffrey P. (2003) Ecological mechanisms for coexistence of colour polymorphism in a coral-reef fish: an experimental evaluation. Oecologia, 137 (4). pp. 519-526.

Russ, Garry R., and Alcala, Angel C. (2003) Marine reserves: rates and patterns of recovery and decline of predatory fish, 1983-2000. Ecological Applications, 13 (6). pp. 1553-1565.

Pit, Josiah H., and Southgate, Paul C. (2003) Should slow growing pearl oyster (Pinctada margaritifera) spat (Runts) be discarded? Journal of Shellfish Research, 22 (3). pp. 773-775.

Dartnall, Alan J., Byrne, Maria, Collins, John, and Hart, Michael W. (2003) A new viviparous species of asterinid (Echinodermata, Asteroidea, Asterinidae) and a new genus to accommodate the species of pantropical exiguoid sea stars. Zootaxa, 359. pp. 1-14.

Caley, M. Julian, and Munday, Philip L. (2003) Growth trades off with habitat specialization. Proceedings of the Royal Society of London Series B, Biological Sciences, 270 (52). pp. 175-177.

Klanten, Selma O., Van Herwerden, Lynne, and Choat, J. Howard (2003) Acquiring reef fish DNA sequences from formalin-fixed museum specimens. Bulletin of Marine Science, 73 (3). pp. 771-776.

Pit, Josiah H., and Southgate, Paul C. (2003) Fouling and predation; how do they affect growth and survival of the blacklip pearl oyster, Pinctada margaritifera, during nursery culture? Aquaculture International, 11 (6). pp. 545-555.

Hughes, T.P., Baird, A.H., Bellwood, D.R., Connolly, S.R., Folke, C., Grosberg, R., Hoegh-Guldberg, O., Jackson, J.B.C., Kleypas, J., Lough, J.M., Marshall, P., Nyström, M., Palumbi, S.R., Pandolfi, J.M., Rosen, B., and Roughgarden, J. (2003) Response to Causes of coral reef degradation [Aronson et al. (2003) Causes of coral reef degradation]. Science, 302 (5650). pp. 1503-1504.

Connolly, Sean R., and Muko, Soyoka (2003) Space preemption, size-dependent competition, and the coexistence of clonal growth forms. Ecology, 84 (11). pp. 2979-2988.

Southgate, Paul C. (2003) Feeds and feed production. In: Lucas, John S., and Southgate, Paul C., (eds.) Aquaculture: farming aquatic animals and plants. Blackwell Publishing, Oxford, UK, pp. 172-198.

Appleford, Peter, Lucas, John S., and Southgate, Paul (2003) General principles. In: Lucas, John S., and Southgate, Paul C., (eds.) Aquaculture: farming aquatic animals and plants. Blackwell Publishing, Oxford, UK, pp. 11-46.

Southgate, Paul C., and Lucas, John S. (2003) Reproduction, life cycles and growth. In: Lucas, John S., and Southgate, Paul C., (eds.) Aquaculture: farming aquatic animals and plants. Blackwell Publishing, Oxford, UK, pp. 111-122.

Kavanagh, Kathryn D., and Alford, Ross A. (2003) Sensory and skeletal development and growth in relation to the duration of the embryonic and larval stages in damselfishes (Pomacentridae). Biological Journal of the Linnean Society, 80 (2). pp. 187-206.

Wolstenholme, Jacqueline K. (2003) Temporal reproductive isolation and gametic compatibility are evolutionary mechanisms in the Acropora humilis species group. In: Australian Coral Reef Society Annual Meeting. p. 68. From: Understanding and protecting coral reefs, 26-29 September, 2003, Townsville, QLD, Australia.

Pitt, Kylie. A, and Kingsford, Michael J. (2003) Temporal variation in the virgin biomass of the edible jellyfish, Catostylus mosaicus (Scyphozoa, Rhizostomeae). Fisheries Research, 63 (3). pp. 303-313.

Dempster, Tim, and Kingsford, Michael J. (2003) Homing of pelagic fish to fish aggregation devices (FADs): the role of sensory cues. Marine Ecology Progress Series, 258. pp. 213-222.

Hughes, T.P., Baird, A.H., Bellwood, D.R., Card, M., Connolly, S.R., Folke, C., Grosberg, R., Hoegh-Guldberg, O., Jackson, J.B.C., Kleypas, J., Lough, J.M., Marshall, P.A., Nyström, M., Palumbi, S.R., Pandolfi, J.M., Rosen, B., and Roughgarden, J. (2003) Climate change, human impacts, and the resilience of coral reefs. Science, 301 (5635). pp. 929-933.

Pandolfi, John M., Bradbury, Roger H., Sala, Enric, Hughes, Terry, Bjorndal, Karen A., Cooke, Richard G., McArdle, Deborah, McClenachan, Loren, Newman, Marah J.H., Paredes, Gustavo, Warner, Robert R., and Jackson, Jeremy B.C. (2003) Global trajectories of the long-term decline of coral reef ecosystems. Science, 301 (5635). pp. 955-958.

Connolly, Sean R., Bellwood, David R., and Hughes, Terence P. (2003) Indo-Pacific biodiversity of coral Rreefs: deviations from a mid-domain model. Ecology, 84 (8). pp. 2178-2190.

Leuzinger, Sebastian, Anthony, Kenneth, and Willis, Bette L. (2003) Reproductive energy investment in corals: scaling with module size. Oecologia, 136 (4). pp. 524-531.

Gillanders, B.M., and Kingsford, M.J. (2003) Spatial variation in elemental composition of otoliths of three species of fish (family Sparidae). Estuarine, Coastal and Shelf Science, 57 (5-6). pp. 1049-1064.

Schubert, Melissa, Munday, Philip L., Caley, M. Julian, Jones, Geoffrey P., and Llewellyn, Lyndon E. (2003) The toxicity of skin secretions from coral-dwelling gobies and their potential role as a predator deterrent. Environmental Biology of Fishes, 67 (2). pp. 359-367.

Wilson, Shaun K., Bellwood, David R., Choat, J. Howard, and Furnas, Miles J. (2003) Detritus in the epilithic algal matrix and its use by coral reef fishes. Oceanography and Marine Biology: an annual review, 41. pp. 279-309.

Wolstenholme, J.K., Wallace, C.C., and Chen, C.A. (2003) Species boundaries within the Acropora humilis species group (Cnidaria; Scleractinia): a morphological and molecular interpretation of evolution. Coral Reefs, 22 (2). pp. 155-166.

Zeller, D., Stoute, S.L., and Russ, G.R. (2003) Movements of reef fishes across marine reserve boundaries: effects of manipulating a density gradient. Marine Ecology Progress Series, 254. pp. 269-280.

McKinnon, A.D., Duggan, S., Nichols, P.D., Rimmer, M.A., Semmens, G., and Robino, B. (2003) The potential of tropical paracalanid copepods as live feeds in aquaculture. Aquaculture, 223 (1-4). pp. 89-106.

McCormick, Mark I. (2003) Consumption of coral propagules after mass spawning enhances larval quality of a damselfish through maternal effects. Oecologia, 136 (1). pp. 37-45.

Ackerman, John L., and Bellwood, David R. (2003) The contribution of small individuals to density-body size relationships. Oecologia, 136 (1). pp. 137-140.

Graham, N.A.J., Evans, R.D., and Russ, G.R. (2003) The effects of marine reserve protection on the trophic relationships of reef fishes on the Great Barrier Reef. Environmental Conservation, 30 (2). pp. 200-208.

Beger, Maria, Jones, Geoffrey P., and Munday, Philip L. (2003) Conservation of coral reef biodiversity: a comparison of reserve selection procedures for corals and fishes. Biological Conservation, 111 (1). pp. 53-62.

van Herwerden, L., Benzie, J., and Davies, Campbell (2003) Microsatellite variation and population genetic structure of the red throat emperor on the Great Barrier Reef. Journal of Fish Biology, 62 (5). pp. 987-999.

Baird, A.H., Babcock, R.C., and Mundy, C.P. (2003) Habitat selection by larvae influences the depth distribution of six common coral species. Marine Ecology Progress Series, 252. pp. 289-293.

van Herwerden, Lynne, Caley, M. Julian, and Blair, David (2003) Regulatory motifs are present in the ITS1 of some flatworm species. Journal of Experimental Zoology Part B: molecular and developmental evolution, 296 (1). pp. 80-86.

Russ, G.R. (2003) Grazer biomass correlates more strongly with production than with biomass of algal turfs on a coral reef. Coral Reefs, 22 (1). pp. 63-67.

Bellwood, David R., Hoey, Andrew S., and Choat, J. Howard (2003) Limited functional redundancy in high diversity systems: resilience and ecosystem function on coral reefs. Ecology Letters, 6 (4). pp. 281-285.

Munday, P.L., Schubert, M., Baggio, J.A., Jones, G.P., Caley, M.J., and Grutter, A.S. (2003) Skin toxins and external parasitism of coral-dwelling gobies. Journal of Fish Biology, 62 (4). pp. 976-981.

Anthony, K.R.N., and Hoegh-Guldberg, O. (2003) Variation in coral photosynthesis, respiration and growth characteristics in contrasting light microhabitats: an analogue to plants in forest gaps and understoreys? Functional Ecology, 17 (2). pp. 246-259.

Bellwood, David R. (2003) Origins and escalation of herbivory in fishes: a functional perspective. Paleobiology, 29 (1). pp. 71-83.

Clements, Kendall D., Gray, Russell D., and Choat, J.Howard (2003) Rapid evolutionary divergences in reef fishes of the family Acanthuridae (Perciformes: Teleostei). Molecular Phylogenetics and Evolution, 26 (2). pp. 190-201.

Doroudi, M.S., Southgate, P.C., and Lucas, J.S. (2003) Variation in clearance and ingestion rates by larvae of the black-lip pearl oyster (Pinctada margaritifera, L.) feeding on various microalgae. Aquaculture Nutrition, 9 (1). pp. 11-16.

Anthony, Kenneth R.N., and Hoegh-Guldberg, Ove (2003) Kinetics of photoacclimation in corals. Oecologia, 134 (1). pp. 23-31.

Kroon, F.J., Munday, P.L., and Pankhurst, N.W. (2003) Steroid hormone levels and bi-directional sex change in Gobiodon histrio. Journal of Fish Biology, 62 (1). pp. 153-167.

Strugnell, Jan M., and Southgate, Paul C. (2003) Changes in tissue composition during larval development of the blacklip pearl oyster, Pinctada margaritifera (L.). Molluscan Research, 23 (2). pp. 179-183.

Jompa, Jamaluddin, and McCook, Laurence J. (2003) Contrasting effects of turf algae on corals: massive Porites spp. are unaffected by mixed-species turfs, but killed by the red alga Anotrichium tenue. Marine Ecology Progress Series, 258. pp. 79-86.

Jompa, Jamaluddin, and McCook, Laurence J. (2003) Coral-algal competition: macroalgae with different properties have different effects on corals. Marine Ecology Progress Series, 258. pp. 87-95.

Rogers, Cary N., de Nys, Rocky, and Steinberg, Peter D. (2003) Ecology of the sea hare Aplysia parvula (Opisthobranchia) in New South Wales, Australia. Molluscan Research, 23 (3). pp. 185-198.

Raso, Sayam, and Anderson, Trevor A. (2003) Effects of dietary fish oil replacement on growth and carcass proximate composition of juvenile barramundi. Aquaculture Research, 34 (10). pp. 813-819.

Saveh Doroudi, Mehdi S., and Southgate, Paul C. (2003) Embryonic and larval development of Pinctada margaritifera (Linnaeus, 1758). Molluscan Research, 23 (2). pp. 101-107.

Gershwin, Lisa-Anne, and Zeidler, Wolfgang (2003) Encounter 2002 expedition to the isles of St Francis, South Australia: Medusae, siphonophores and ctenophores. Transactions of the Royal Society of South Australia, 127. pp. 205-241.

Babcock, Russ C., Baird, Andrew H., Piromvaragorn, Srisakul, Thomson, Damian P., and Willis, Bette L. (2003) Identification of scleractinian coral recruits from Indo-Pacific reefs. Zoological Studies, 42 (1). pp. 211-226.

Scardino, Andrew, de Nys, Rocky, Ison, Odette, O'Connor, Wayne, and Steinberg, Peter (2003) Microtopography and antifouling properties of the shell surface of the bivalve molluscs Mytilus galloprovincialis and Pinctada imbricata. Biofouling, 19 (Supp 1). pp. 221-230.

Adams, S. (2003) Morphological ontogeny of the gonad of three plectropomid species through sex differentiation and transition. Journal of Fish Biology, 63 (1). pp. 22-36.

Arango, C.P., and Brodie, G.D. (2003) Observations of predation on the tropical Nudibranch Okenia sp. by sea spider Anoplodactylus longiceps Williams (Arthropoda: Pycnogonida). The Veliger, 46 (1). pp. 99-101.

Steer, Mike A., and Semmens, Jayson M. (2003) Pulling or drilling, does size or species matter? an experimental study of prey handling in Octopus dierythaeus (Norman, 1992). Journal of Experimental Marine Biology & Ecology, 290 (2). pp. 165-178.

Williams, Ashley J., Davies, Campbell R., Mapstone, Bruce D., and Russ, Garry R. (2003) Scales of spatial variation in demography of a large coral reef fish: an exception to the typical model? Fishery Bulletin, 101 (3). pp. 673-683.

Fisher, R. (2003) Spatial and temporal variations in nematode assemblages in tropical seagrass sediments. Hydrobiologia, 493 (1). pp. 43-63.

Lecchini, David, Adjeroud, Mehdi, Pratchett, Morgan S., Cadoret, Laurence, and Galzin, René (2003) Spatial structure of coral reef fish communities in the Ryukyu Islands, southern Japan. Oceanologica Acta, 26. pp. 537-547.

Russ, Garry R., Alcala, Angel C., and Maypa, Aileen P. (2003) Spillover from marine reserves: the case of Naso vlamingii at Apo Island, the Philippines. Marine Ecology Progress Series, 264. pp. 15-20.

Pitt, Kylie A., and Kingsford, Michael J. (2003) Temporal and spatial variation in recruitment and growth of medusae of the jellyfish, Catostylus mosaicus (Scyphozoa : Rhizostomeae). Marine and Freshwater Research, 54 (2). pp. 117-125.

Fisher, Rebecca, and Bellwood, David R. (2003) Undisturbed swimming behaviour and nocturnal activity of coral reef fish larvae. Marine Ecology Progress Series, 263. pp. 177-188.

Choat, J.H., Robertson, D.R., Ackerman, J.L., and Posada, J.M. (2003) An age-based demographic analysis of the Caribbean stoplight parrotfish Sparisoma viride. Marine Ecology Progress Series, 246. pp. 265-277.

Depczynski, Martial, and Bellwood, David R. (2003) The role of cryptobenthic reef fishes in coral reef trophodynamics. Marine Ecology Progress Series, 256. pp. 183-191.

Austin, C.M., Nguyen, T.T.T., Meewan, M. M., and Jerry, D.R. (2003) The taxonomy and phylogeny of the 'Cherax destructor' complex (Decapoda: Parastacidae) examined using mitochondrial 16S sequences. Australian Journal of Zoology, 51 (2). pp. 99-110.

Ferry-Graham, L.A., Wainwright, P.C., Westneat, M.W., and Bellwood, D.R. (2002) Mechanisms of benthic prey capture in wrasses (Labridae). Marine Biology, 141 (5). pp. 819-830.

McCormick, Mark I., and Nechaev, Igor V. (2002) Influence of cortisol on development rhythms during embryogenesis in a tropical damselfish. Journal of Experimental Zoology, 293 (5). pp. 456-466.

Bellwood, D.R., Wainwright, P.C. , Fulton, C.J., and Hoey, A. (2002) Assembly rules and functional groups at global biogeographical scales. Functional Ecology, 16 (5). pp. 557-562.

Steinberg, Peter D., de Nys, Rocky, and Kjelleberg, Staffan (2002) Chemical cues for surface colonization. Journal of Chemical Ecology, 28 (10). pp. 1935-1951.

Bastidas, C., Benzie, J.A.H., and Fabricius, K.E. (2002) Genetic differentiation among populations of the brooding soft coral Clavularia koellikeri on the Great Barrier Reef. Coral Reefs, 21 (3). pp. 233-241.

van Oppen, Madeleine J.H., Willis, Bette L., van Rheede, Teun, and Miller, David J. (2002) Spawning times, reproductive compatibilities and genetic structuring in the Acropora aspera group: evidence for natural hybridization and semi-permeable species boundaries in corals. Molecular Ecology, 11 (8). pp. 1363-1376.

Baird, A.H., and Marshall, P.A. (2002) Mortality, growth and reproduction in scleractinian corals following bleaching on the Great Barrier Reef. Marine Ecology Progress Series, 237. pp. 133-141.

Doroudi, Mehdi S., Southgate, Paul C., and Mayer, Robert J. (2002) Evaluation of partial substitution of live algae with dried Tetraselmis for larval rearing of black-lip pearl oyster, Pinctada margaritifera (L.). Aquaculture International, 10 (4). pp. 265-277.

Wilson, Shaun (2002) Nutritional value of detritus and algae in blenny territories on the Great Barrier Reef. Journal of Experimental Marine Biology and Ecology, 271 (24). pp. 155-169.

Bean, Kyi, Jones, Geoffrey P., and Caley, M. Julian (2002) Relationships among distribution, abundance and microhabitat specialisation in a guild of coral reef triggerfish (family Balistidae). Marine Ecology - Progress Series, 233. pp. 263-272.

Baird, Andrew H,, Bellwood, David R., Connell, Joseph H., Cornell, Howard V., Hughes, Terry P., Karlson, Ronald H., and Rosen, Brian R. (2002) Coral reef biodiversity and conservation. Science, 296 (5570). pp. 1026-1028.

Choat, J. Howard, and Robertson, D. Ross (2002) Age-based studies. In: Sale, Peter S., (ed.) Coral Reef Fishes: dynamic and diversity in a complex ecosystem. Elsevier, San Diego, CA, USA, pp. 57-80.

Chen, Chaolum Allen, Wallace, Carden C., and Wolstenholme, Jackie (2002) Analysis of the mitochondrial 12S rRNA gene supports a two-clade hypothesis of the evolutionary history of scleractinian corals. Molecular Phylogenetics and Evolution, 23 (2). pp. 137-149.

Wainwright, Peter C., and Bellwood, David R. (2002) Ecomorphology of feeding in coral reef fishes. In: Sale, Peter S., (ed.) Coral Reef Fishes: dynamic and diversity in a complex ecosystem. Elsevier, San Diego, CA, USA, pp. 33-55.

Jompa, Jamaluddin, and McCook, Laurence J. (2002) Effects of competition and herbivory on interactions between a hard coral and a brown alga. Journal of Experimental Marine Biology and Ecology, 271 (1). pp. 25-39.

Streelman, J.T., Alfaro, M., Westneat, M.W., Bellwood, D.R., and Karl, S.A. (2002) Evolutionary history of the parrotfishes: biogeography, ecomorphology, and comparative diversity. Evolution, 56 (5). pp. 961-971.

Jones, Geoffrey P., and McCormick, Mark I. (2002) Numerical and energetic processes in the ecology of coral reef fishes. In: Sale, Peter S., (ed.) Coral Reef Fishes: dynamic and diversity in a complex ecosystem. Elsevier, San Diego, CA, USA, pp. 221-238.

Jones, Geoffrey P., Caley, M. Julian, and Munday, Philip L. (2002) Rarity in coral reef fish communities. In: Sale, Peter F., (ed.) Coral Reef Fishes: dynamics and diversity in a complex ecosystem. Elsevier, San Diego, CA, USA, pp. 81-101.

Leis, Jeffrey M., and McCormick, Mark I. (2002) The biology, behavior, and ecology of the pelagic, larval stage of coral reef fishes. In: Sale, Peter F., (ed.) Coral Reef Fishes: dynamic and diversity in a complex ecosystem. Elsevier, San Diego, CA, USA, pp. 171-199.

Bellwood, David R., and Wainwright, Peter C. (2002) The history and biogeography of fishes on coral reefs. In: Sale, Peter S., (ed.) Coral Reef Fishes: dynamic and diversity in a complex ecosystem. Elsevier, San Diego, CA, USA, pp. 5-32.

Marnane, Michael J., and Bellwood, David R. (2002) Diet and nocturnal foraging in cardinalfishes (Apogonidae) at One Tree Reef, Great Barrier Reef, Australia. Marine Ecology Progress Series, 231. pp. 261-268.

Ackerman, J.L., and Bellwood, D.R. (2002) Comparative efficiency of clove oil and rotenone for sampling tropical reef fish assemblages. Journal of Fish Biology, 60 (4). pp. 893-901.

Sanchez-Jerez, P., Gillanders, B., and Kingsford, M.J. (2002) Spacial variation in abundance of prey and diet of trumpeter (Pelates sexlineatus: Teraponidae) associated with Zostera capricorni seagrass meadows. Austral Ecology, 27 (2). pp. 200-210.

Fisher, R., and Bellwood, D.R. (2002) The influence of swimming speed on sustained swimming performance of late-stage reef fish larvae. Marine Biology, 140 (4). pp. 801-807.

Fisher, R., and Bellwood, D.R. (2002) A light trap design for stratum-specific sampling of reef fish larvae. Journal of Experimental Marine Biology and Ecology, 269 (1). pp. 27-37.

Connolly, Sean R., and Miller, Arnold I. (2002) Global Ordovician faunal transitions in the marine benthos: ultimate causes. Paleobiology, 28 (1). pp. 26-40.

Hughes, T.P., Baird, A.H., Dinsdale, E.A., Harriott, V.J., Moltschaniwskyj, N.A., Pratchett, M.S., Tanner, J.E., and Willis, B.L. (2002) Detecting regional variation using meta-analysis and large-scale sampling: latitudinal patterns in recruitment. Ecology, 83 (2). pp. 436-451.

Platten, J. R., Tibbetts, I. R., and Sheaves, M. J. (2002) The influence of increased line-fishing mortality on the sex ratio and age of sex reversal of the venus tusk fish. Journal of Fish Biology, 60 (2). pp. 301-318.

Swearer, Stephen E., Shima, Jeffrey S., Hellberg, Michael E., Thorrold, Simon R., Jones, Geoffrey P., Robertson, D. Ross, Morgan, Steven G., Selkoe, Kimberly A., Ruiz, Gregory M., and Warner, Robert R. (2002) Evidence of self-recruitment in demersal marine populations. Bulletin of Marine Science, 70 (Supple). pp. 251-271.

Strathmann, Richard R., Hughes, Terence P., Kuris, Armand M., Lindeman, Kenyon C., Morgan, Steven G., Pandolfi, John M., and Warner, Robert R. (2002) Evolution of local recruitment and its consequences for marine populations. Bulletin of Marine Science, 70 (Supple). pp. 377-396.

Sponaugle, Su, Cowen, Robert K., Shanks, Alan, Morgan, Steven G., Leis, Jeffrey M., Pineda, Jesus, Boehlert, George W., Kingsford, Michael J., Lindeman, Kenyon C., Grimes, Churchill, and Munro, John L. (2002) Predicting self-recruitment in marine populations: biophysical correlates and mechanisms. Bulletin of Marine Science, 70 (1). pp. 341-375.

Thorrold, Simon R., Jones, Geoffrey, Hellberg, Michael E., Burton, Ronald S., Swearer, Stephen E., Neigel, Jospeh E., Morgan, Steven G., and Warner, Robert R. (2002) Quantifying larval retention and connectivity in marine populations with artificial and natural markers. Bulletin of Marine Science, 70 (Supple). pp. 291-308.

Kingsford, Michael J., Leis, Jeffrey M., Shanks, Alan, Lindeman, Kenyon C., Morgan, Steven G., and Pineda, Jesús (2002) Sensory environments, larval abilities and local self-recruitment. Bulletin of Marine Science, 70 (Supple). pp. 309-340.

Munday, Philip L. (2002) Bi-directional sex change: testing the growth-rate advantage model. Behavioural Ecology and Sociobiology, 52 (3). pp. 247-254.

Hughes, Terry P., Bellwood, David R., and Connolly, Sean R. (2002) Biodiversity hotspots, centres of endemicity, and the conservation of coral reefs. Ecology Letters, 5 (6). pp. 775-784.

Steinberg, Peter D., and de Nys, Rocky (2002) Chemical mediation of colonization of seaweed surfaces. Journal of Phycology, 38 (4). pp. 621-629.

Anthony, Kenneth R.N., Connolly, Sean R., and Willis, Bette L. (2002) Comparative analysis of energy allocation to tissue and skeletal growth in corals. Limnology and Oceanography, 47 (5). pp. 1417-1429.

McCormick, M.I., Makey, L., and Dufour, V. (2002) Comparative study of metamorphosis in tropical reef fishes. Marine Biology, 141 (5). pp. 841-853.

Anthony, K.R.N., and Larcombe, P. (2002) Coral reefs in turbid waters: sediment-induced stresses in corals and likely mechanisms of adaptation. In: Moosa, M. Kasim, Soemodihardjo, Subagjo, Soegiarto, Aprilani, Romimohtarto, Kasijan, Nontji, Anugerah, Soekarno, , and Suharsono, , (eds.) Procedings of the 9th International Coral Reef Symposium. Ministery of Environment, Indonesian Institute of Sciences and International Society for Reef Studies, Bali, Indonesia, pp. 239-244.

Gust, N., Choat, J., and Ackerman, J. (2002) Demographic plasticity in tropical reef fishes. Marine Biology, 140 (5). pp. 1039-1051.

Wainwright, Peter C., Bellwood, David R., and Westneat, Mark W. (2002) Ecomorphology of locomotion in labrid fishes. Environmental Biology of Fishes, 65 (1). pp. 47-62.

Si, Aung, Bellwood, O., and Alexander, C.G. (2002) Evidence for filter-feeding by the wood-boring isopod, Sphaeroma terebrans (Crustacea: Peracarida). Journal of Zoology, 256 (4). pp. 463-471.

Wilson, David T., and Meekan, Mark G. (2002) Growth-related advantages for survival to the point of replenishment in the coral reef fish Stegastes partitus (Pomacentridae). Marine Ecology-Progress Series, 231. pp. 247-260.

Munday, Philip L., Pierce, Sarah J., Jones, Geoffrey P., and Larson, Helen K. (2002) Habitat use, social organization and reproductive biology of the seawhip goby, Bryaninops yongei. Marine and Freshwater Research, 53 (4). pp. 769-775.

Gillanders, Bronwyn M., and Kingsford, Michael J. (2002) Impact of changes in flow of freshwater on estuarine and open coastal habitats and the associated organisms. Oceanography and Marine Biology: an annual review, 40. pp. 233-309.

Blanco-Martin, B. (2002) Influence of larval competence periods on coral larval settlement and reef connectivity: a modelling approach. In: Proceedings of the 9th International Coral Reef Symposium (1) pp. 57-62. From: 9th International Coral Reef Symposium: World Coral Reefs in the New Millenium, 23-27 October 2000, Bali, Indonesia.

Bergenius, Mikaela A.J., Meekan, Mark G., Robertson, D. Ross, and Mccormick, Mark I. (2002) Larval growth predicts the recruitment success of a coral reef fish. Oecologia, 131 (4). pp. 521-525.

Atema, Jelle, Kingsford, Michael J., and Gerlach, Gabriele (2002) Larval reef fish could use odour for detection, retention and orientation to reefs. Marine Ecology Progress Series, 241. pp. 151-160.

Baird, A.H., Marshall, P.A., and Wolstenholme, J. (2002) Latitudinal variation in the reproduction of Acropora in the Coral Sea. In: Proceedings of the Ninth International Coral Reef Symposium (1) pp. 385-390. From: World Coral Reefs in the New Millenium: bridging research and management for sustainable development, 23-27 October 2000, Bali, Indonesia.

Round, Frank E., and Alexander, Christopher G. (2002) Licmosoma: a new diatom genus growing on barnacle cirri. Diatom Research, 17 (2). pp. 319-326.

de Nys, Rocky, and Steinberg, Peter D. (2002) Linking marine biology and biotechnology. Current Opinion in Biotechnology, 13 (3). pp. 244-248.

Maypa, A.P., Russ, G.R., Alcala, A.C., and Calumpong, H.P. (2002) Long-term trends in yield and catch rates of the coral reef fishery at Apo Island, central Philippines. Marine and Freshwater Research, 53 (2). pp. 207-213.

Wallace, C.C., Paulay, G., Hoeksema, B.W., Bellwood, D.R., Hutchings, P.A., Barber, P.H., Erdmann, M., and Wolstenholme, J. (2002) Nature and origins of unique high diversity reef faunas in the Bay of Tomini, Central Sulawesi: the ultimate 'centre of diversity’? In: Proceedings of the Ninth International Coral Reef Symposium (1) pp. 185-192. From: World Coral Reefs in the New Millenium: bridging research and management for sustainable development, 23-27 October 2000, Bali, Indonesia.

Fulton, Christopher J., and Bellwood, David R. (2002) Ontogenetic habitat use in labrid fishes: an ecomorphological perspective. Marine Ecology Progress Series, 236. pp. 255-262.

Molony, Brett W., and Sheaves, Marcus J. (2002) Otolith increment widths as tools to record and assess environmental changes in estuarine areas. Marine Technology Society Journal, 36 (1). pp. 44-51.

Fulton, Christopher J., and Bellwood, David R. (2002) Patterns of foraging in labrid fishes. Marine Ecology-Progress Series, 226. pp. 135-142.

Chen, Li-Shu (2002) Post-settlement diet shift of Chlorurus sordidus and Scarus schlegeli (Pisces: Scaridae). Zoological Studies, 41 (1). pp. 47-58.

Alcala, C., and Russ, G.R. (2002) Role of socioeconomic factors in coral reef protection and management. In: Proceedings of the 9th International Coral Reef Symposium (1) pp. 29-32. From: 9th International Coral Reef Symposium: World Coral Reefs in the New Millenium, 23-27 October 2000, Bali, Indonesia.

Curley, Belinda G., Kingsford, Michael J., and Gillanders, Bronwyn M. (2002) Spatial and habitat-related patterns of temperate reef fish assemblages: implications for the design of Marine Protected Areas. Marine and Freshwater Research, 53 (8). pp. 1197-1210.

Alcala, A.C., and Russ, G.R. (2002) Status of Philippine coral reef fisheries. Asian Fisheries Science, 15 (2). pp. 177-192.

Marquez, L.M., van Oppen, M.J.H., Willis, B.L., and Miller, D.J. (2002) Sympatric populations of the highly cross-fertile coral species Acropora hyacinthus and Acropora cytherea are genetically distinct. Proceedings of the Royal Society of London Series B, Biological Sciences, 269 (1497). pp. 1289-1294.

Kritzer, Jacob P. (2002) Variation in the population biology of stripey bass Lutjanus carponotatus within and between two island groups on the Great Barrier Reef. Marine Ecology Progress Series, 243. pp. 191-207.

Green, B.S., Reilly, S.M., and McCormick, M.I. (2002) A cost-effective method of preparing larval fish otoliths for reading using enzyme digestion and staining. Journal of Fish Biology, 61 (6). pp. 1600-1605.

Doroudi, Mehdi S., and Southgate, Paul C. (2002) The effect of chemical cues on settlement behaviour of blacklip pearl oyster (Pinctada margaritifera) larvae. Aquaculture, 209 (1-4). pp. 117-124.

Jompa, Jamaluddin, and McCook, Laurence J. (2002) The effects of nutrients and herbivory on competition between a hard coral (Porites cylindrica) and a brown alga (Lobophora variegata). Limnology and Oceanography, 47 (2). pp. 527-534.

Munday, P.L., and Molony, B.W. (2002) The energetic cost of protogynous versus protandrous sex change in the bi-directional sex-changing fish Gobiodon histrio. Marine Biology, 141 (6). pp. 1011-1017.

Marquez, L.M., van Oppen, M.J.H., Willis, B.L., Reyes, A., and Miller, D.J. (2002) The highly cross-fertile coral species, Acropora hyacinthus and Acropora cytherea, constitute statistically distinguishable lineages. Molecular Ecology, 11 (8). pp. 1339-1349.

Cimino, Elizabeth J., Owens, Leigh, Bromage, Erin, and Anderson, Trevor A. (2002) A newly developed ELISA showing the effect of environmental stress on levels of hsp86 in Cherax quadricarinatus and Penaeus monodon. Comparative Biochemistry and Physiology A - Molecular and Integrative Physiology, 132 (3). pp. 591-598.

Bellwood, Orpha (2002) The occurrence, mechanics and significance of burying behaviour in crabs (Crustacea: Brachyura). Journal of Natural History, 36 (10). pp. 1223-1238.

Choat, J.H., Clements, K.D., and Robbins, W.D. (2002) The trophic status of herbivorous fishes on coral reefs. Marine Biology, 140 (3). pp. 613-623.

Sheaves, Marcus (2001) Are there really few piscivorous fishes in shallow estuarine habitats? Marine Ecology-Progress Series, 222. pp. 279-290.

Wilson, Shaun K., Burns, Kathryn, and Codi, Susan (2001) Sources of dietary lipids in the coral reef blenny Salarias patzneri. Marine Ecology-Progress Series, 222. pp. 291-296.

Bay, L.K., Jones, G.P., and McCormick, M.I. (2001) Habitat selection and aggression as determinants of spatial segregation among damselfish on a coral reef. Coral Reefs, 20 (3). pp. 289-298.

Brodie, Gilianne D., Klussmann-Kolb, Annette, and Gosliner, Terrence M. (2001) Anatomy and histology of a new species of Enotepteron (Cephalaspidea: Gastropteridae) from tropical northeastern Australia. The Veliger, 44 (4). pp. 362-369.

Wilson, Shaun, Burns, Kathryn, and Codi, Susan (2001) Identifying sources of organic matter in sediments from a detritivorous coral reef fish territory. Organic Geochemistry, 32 (10). pp. 1257-1269.

Wilson, J.P., and Sheaves, M. (2001) Short-term temporal variations in taxonomic composition and trophic structure of a tropical estuarine fish assemblage. Marine Biology, 139 (4). pp. 787-796.

Pratchett, M.S., Gust, N., Goby, G., and Klanten, S.O. (2001) Consumption of coral propagules represents a significant trophic link between corals and reef fish. Coral Reefs, 20 (1). pp. 13-17.

Jackson, Jeremy B. C., Kirby, Michael X., Berger, Wolfgang H., Bjorndal, Karen A., Botsford, Louis W., Bourque, Bruce J., Bradbury, Roger H., Cooke, Richard, Erlandson, Jon, Estes, James A., Hughes, Terence P., Kidwell, Susan, Lange, Carina B., Lenihan, Hunter S., Pandolfi, John M., Peterson, Charles H., Steneck, Robert S., Tegner, Mia J., and Warner, Robert R. (2001) Historical overfishing and the recent collapse of coastal ecosystems. Science, 293 (5530). pp. 629-637.

Ferry-Graham, Lara A., Wainwright, Peter C., Westneat, Mark W., and Bellwood, David R. (2001) Modulation of prey capture kinematics in the cheeklined wrasse Oxycheilinus digrammus (Teleostei: Labridae). Journal of Experimental Zoology, 290 (2). pp. 88-100.

van Oppen, Madeleine J.H., McDonald, Brenda J., Willis, Bette, and Miller, David J. (2001) The evolutionary history of the coral genus Acropora (Scleractinia, Cnidaria) based on a mitochondrial and a nuclear marker: reticulation, incomplete lineage sorting, or morphological convergence? Molecular Biology and Evolution, 18 (7). pp. 1315-1329.

Adams, S., and Williams, A.J. (2001) A preliminary test of the transitional growth spurt hypothesis using the protogynous coral trout Plectropomus maculatus. Journal of Fish Biology, 59 (1). pp. 183-185.

Caley, M. Julian, Schwarzkopf, Lin, and Shine, Richard (2001) Does total reproductive effort evolve independently of offspring size? Evolution: international journal of organic evolution, 55 (6). pp. 1245-1248.

Lukoschek, Vimoksalehi, and McCormick, Mark I. (2001) Ontogeny of diet changes in a tropical benthic carnivorous fish, Parupeneus barberinus (Mullidae): relationship between foraging behaviour, habitat use, jaw size, and prey selection. Marine Biology, 138 (6). pp. 1099-1113.

Bellwood, David R., and Hughes, Terry P. (2001) Regional-scale assembly rules and biodiversity of coral reefs. Science, 292 (5521). pp. 1532-1534.

Ferry-Graham, Lara A., Wainwright, Peter C., Hulsey, C. Darrin, and Bellwood, David R. (2001) Evolution and mechanics of long jaws in butterflyfishes (Family Chaetodontidae). Journal of Morphology, 248 (2). pp. 120-143.

Pratchett, Morgan S. (2001) Influence of coral symbionts on feeding preferences of crown-of-thorns starfish Acanthaster planci in the western Pacific. Marine Ecology-Progress Series, 214. pp. 111-119.

Gust, Nick, Choat, J. Howard, and Mccormick, Mark I. (2001) Spatial variability in reef fish distribution, abundance, size and biomass : a multi-scale analysis. Marine Ecology Progress Series, 214. pp. 237-251.

Eagle, Janelle V., Jones, Geoffrey P., and McCormick, Mark I. (2001) A multi-scale study of the relationships between habitat use and the distribution and abundance patterns of three coral reef angelfishes (Pomacanthidae). Marine Ecology-Progress Series, 214. pp. 253-265.

Meekan, M.G., Ackerman, J.L., and Wellington, G.M. (2001) Demography and age structures of coral reef damselfishes in the tropical eastern Pacific Ocean. Marine Ecology-Progress Series, 212. pp. 223-232.

Stewart, B.D., and Jones, G.P. (2001) Associations between the abundance of piscivorous fishes and their prey on coral reefs: implications for prey-fish mortality. Marine Biology, 138 (2). pp. 383-397.

Ferry-Graham, Lara A., Wainwright, Peter C., and Bellwood, David R. (2001) Prey capture in long-jawed butterflyfishes (Chaetodontidae): the functional basis of novel feeding habits. Journal of Experimental Marine Biology and Ecology, 256 (2). pp. 167-184.

Baird, A.H., Sadler, C., and Pitt, M. (2001) Synchronous spawning of Acropora in the Solomon Islands. Coral Reefs, 19 (3). p. 286.

Schulz, Melissa K., and Alexander, C.G. (2001) Aggressive behaviour of Caprella Scaura Typica Mayer, 1890. (Crustacea: Amphipoda). Marine and Freshwater Behaviour and Physiology, 34 (3). pp. 181-187.

Molony, Brett W., and Sheaves, Marcus J. (2001) Challenges of external insemination in a tropical sparid fish, Acanthopagrus berda. Environmental Biology of Fishes, 61 (1). pp. 65-71.

Kritzer, J.P., Davies, C.R., and Mapstone, B.D. (2001) Characterizing fish populations: effects of sample size and population structure on the precision of demographic parameter estimates. Canadian Journal of Fisheries and Aquatic Sciences, 58 (8). pp. 1557-1568.

Sheaves, Marcus, and Molony, Brett (2001) Coherent patterns of abundance and size of a tropical snapper in dynamic estuary systems. Wetlands Ecology and Management, 9 (5). pp. 429-439.

Kesarcodi-Watson, A., Lucas, J.S., and Klumpp, D. (2001) Comparative feeding and physiological energetics of diploid and triploid Sydney rock oysters, Saccostrea commercialis. Aquaculture, 203 (1-2). pp. 177-193.

Kesarcodi-Watson, A., Lucas, J.S., and Klumpp, D. (2001) Comparative feeding and physiological energetics of diploid and triploid Sydney rock oysters, Saccostrea commercialis. II. Influences of food concentration and tissue energy distribution. Aquaculture, 203 (1-2). pp. 195-216.

Crossman, David J., Choat, J. Howard, Clements, Kendall D., Hardy, Tom, and McConochie, Jason (2001) Detritus as food for grazing fishes on coral reefs. Limnology and Oceanography, 46 (7). pp. 1596-1605.

Fisher, R., and Bellwood, D.R. (2001) Effects of feeding on the sustained swimming abilities of late-stage larval Amphiprion melanopus. Coral Reefs, 20 (2). pp. 151-154.

Chang, Marshall, and Southgate, Paul C. (2001) Effects of varying dietry fatty acid composition on growth and survival of seahorse, Hippocampus sp. juveniles. Aquarium Sciences and Conservation, 3 (1-3). pp. 205-214.

Vytopil, E., and Willis, B.L. (2001) Epifaunal community structure in Acropora spp. (Scleractinia) on the Great Barrier Reef: implications of coral morphology and habitat complexity. Coral Reefs, 20 (3). pp. 281-288.

Munday, Philip L. (2001) Fitness consequences of habitat use and competition among coral-dwelling fishes. Oecologia, 128 (4). pp. 585-593.

Pecl, G. (2001) Flexible reproductive strategies in tropical and temperate Sepioteuthis squids. Marine Biology, 138 (1). pp. 93-101.

Bastidas, C., Benzie, J.A.H., Uthicke, S., and Fabricius, K. (2001) Genetic differentiation among populations of a broadcast spawning soft coral, Sinularia flexibilis, on the Great Barrier Reef. Marine Biology, 138 (3). pp. 517-525.

Michalek-Wagner, K., and Willis, B.L. (2001) Impacts of bleaching on the soft coral Lobophytum compactum. I. Fecundity, fertilization and offspring viability. Coral Reefs, 19 (3). pp. 231-239.

Michalek-Wagner, K., and Willis, B.L. (2001) Impacts of bleaching on the soft coral Lobophytum compactum. II. Biochemical changes in adults and their eggs. Coral Reefs, 19 (3). pp. 240-246.

Munday, Philip L., Jones, Geoffrey P., and Caley, M. Julian (2001) Interspecific competition and coexistence in a guild of coral-dwelling fishes. Ecology, 82 (8). pp. 2177-2189.

Bellwood, D.R., and Wainwright, P.C. (2001) Locomotion in labrid fishes: implications for habitat use and cross-shelf biogeography on the Great Barrier Reef. Coral Reefs, 20 (2). pp. 139-150.

Wilson, S.K. (2001) Multiscale habitat associations of detrivorous blennies (Blenniidae: Salariini). Coral Reefs, 20 (3). pp. 245-251.

Green, Bridget S., and Mccormick, Mark I. (2001) Ontogeny of the digestive and feeding systems in the anemonefish Amphiprion melanopus. Environmental Biology of Fishes, 61 (1). pp. 73-83.

Emslie, Michael J., and Jones, Geoffrey P. (2001) Patterns of embryo mortality in a demersally spawning coral reef fish and the role of predatory fishes. Environmental Biology of Fishes, 60 (4). pp. 363-373.

Jerry, D. R., Elphinstone, M. S., and Baverstock, P. R. (2001) Phylogenetic relationships of Australian members of the family Percichthyidae inferred from mitochondrial 12S rRNA sequence data. Molecular Phylogenetics and Evolution, 18 (3). pp. 335-347.

Haine, Olivia S., Ridd, Peter V., and Rowe, Richard J. (2001) Range of electrosensory detection of prey by Carcharhinus melanopterus and Himantura granulata. Marine and Freshwater Research, 52 (3). pp. 291-296.

Bellwood, David R., and Fisher, Rebecca (2001) Relative swimming speeds in reef fish larvae. Marine Ecology-Progress Series, 211. pp. 299-303.

Michalek-Wagner, K. (2001) Seasonal and sex-specific variations in levels of photo-protecting mycosporine-like amino acids (MAAs) in soft corals. Marine Biology, 139 (4). pp. 651-660.

Caley, M. Julian, Buckley, Kathryn A., and Jones, Geoffrey P. (2001) Separating ecological effects of habitat fragmentation, degradation, and loss on coral commensals. Ecology, 82 (12). pp. 3435-3448.

Syms, Craig, and Jones, Geoffrey P. (2001) Soft corals exert no direct effects on coral reef fish assemblages. Oecologia, 127 (4). pp. 560-571.

Purcell, S.W., and Bellwood, D.R. (2001) Spatial patterns of epilithic algal and detrital resources on a windward coral reef. Coral Reefs, 20 (2). pp. 117-125.

Job, Suresh D., and Shand, Julia (2001) Spectral sensitivity of larval and juvenile coral reef fishes: implications for feeding in a variable light environment. Marine Ecology-Progress Series, 214. pp. 267-277.

Ceccarelli, Daniela M., Jones, Geoffrey P., and McCook, Laurence J. (2001) Territorial damselfishes as determinants of the structure of benthic communities on coral reefs. Oceanography and Marine Biology: an annual review, 39. pp. 355-389.

St John, Jill, Russ, Gary R., Brown, Ian W., and Squire, Lyle C. (2001) The diet of the large coral reef serranid Plectropomus leopardus in two fishing zones on the Great Barrier Reef, Australia. Fishery Bulletin, 99 (1). pp. 180-192.

Michalek-Wagner, K., Bourne, D.J., and Bowden, B.F. (2001) The effects of different strains of zooxanthellae on the secondary-metabolite chemistry and development of the soft-coral host Lobophytum compactum. Marine Biology, 138 (4). pp. 753-760.

Fulton, C.J., Bellwood, D.R., and Wainwright, P.C. (2001) The relationship between swimming ability and habitat use in wrasses (Labridae). Marine Biology, 139 (1). pp. 25-33.

Nankervis, L., Matthews, S.J., and Appleford, P. (2000) Effect of dietary non-protein energy source on growth, nutrient retention and circulating insulin-like growth factor I and triiodothyronine levels in juvenile barramundi, Lates calcarifer. Aquaculture, 191 (4). pp. 323-335.

Dudgeon, C.L., Gust, N., and Blair, D. (2000) No apparent genetic basis to demographic differences in scarid fishes across continental shelf of the Great Barrier Reef. Marine Biology, 137 (5-6). pp. 1059-1066.

Marnane, M.J. (2000) Site fidelity and homing behaviour in coral reef cardinalfishes. Journal of Fish Biology, 57 (6). pp. 1590-1600.

Ackerman, John L., and Bellwood, David R. (2000) Reef fish assemblages: a re-evaluation using enclosed rotenone stations. Marine Ecology-Progress Series, 206. pp. 227-237.

Ayre, David J., and Hughes, Terence P. (2000) Genotypic diversity and gene flow in brooding and spawning corals along the Great Barrier Reef, Australia. Evolution, 54 (5). pp. 1590-1605.

Van Herwerden, Lynne, Blair, David, and Agatsuma, Takeshi (2000) Multiple lineages of the mitochondrial gene NADH dehydrogenase subunit 1 (ND1) in parasitic helminths: implications for molecular evolutionary studies of facultatively anaerobic eukaryotes. Journal of Molecular Evolution, 51 (4). pp. 339-352.

Pit, J.H., and Southgate, P.C. (2000) When should pearl oyster, Pinctada margaritifera (L.), spat be transferred from the hatchery to the ocean? Aquaculture Research, 31 (10). pp. 773-778.

Van Oppen, M.J.H., Willis, B.L., Van Vugt, H.W.J., and Miller, D.J. (2000) Examination of species boundaries in the Acropora cervicornis group (Scleractinia, Cnidaria) using nuclear DNA sequence analyses. Molecular Ecology, 9 (9). pp. 1363-1373.

Anthony, Kenneth R.N., and Fabricius, Katharina E. (2000) Shifting roles of heterotrophy and autotrophy in coral energetics under varying turbidity. Journal of Experimental Marine Biology and Ecology, 252 (2). pp. 221-253.

Doroudi, M.S., and Southgate, P.C. (2000) The influence of algal ration and larval density on growth and survival of blacklip pearl oyster Pinctada margaritifera (L.) larvae. Aquaculture Research, 31 (8-9). pp. 621-626.

Fisher, Rebecca, Bellwood, David R., and Job, Suresh (2000) Development of swimming abilities in reef fish larvae. Marine Ecology-Progress Series, 202. pp. 163-173.

Baird, A.H., and Hughes, T.P. (2000) Competitive dominance by tabular corals: an experimental analysis of recruitment and survival of understorey assemblages. Journal of Experimental Marine Biology and Ecology, 251 (1). pp. 117-132.

Koh, Esther G. L., and Sweatman, Hugh (2000) Chemical warfare among scleractinians: bioactive natural products from Tubastraea faulkneri Wells kill larvae of potential competitors. Journal of Experimental Marine Biology and Ecology, 251 (2). pp. 141-160.

Hughes, Terence P., and Tanner, Jason E. (2000) Recruitment failure, life histories, and long-term decline of Caribbean corals. Ecology, 81 (8). pp. 2250-2263.

Hughes, T. P., Baird, A. H., Dinsdale, E. A., Moltschaniwskyj, N. A., Pratchett, M. S., Tanner, J. E., and Willis, B. L. (2000) Supply-side ecology works both ways: the link between benthic adults, fecundity, and larval recruits. Ecology, 81 (8). pp. 2241-2249.

Marshall, P.A., and Baird, A.H. (2000) Bleaching of corals on the Great Barrier Reef: differential susceptibilities among taxa. Coral Reefs, 19 (2). pp. 155-163.

Adams, S., Mapstone, B.D., Russ, G.R., and Davies, C.R. (2000) Geographic variation in the sex ratio, sex specific size, and age structure of Plectropomus leopardus (Serranidae) between reefs open and closed to fishing on the Great Barrier Reef. Canadian Journal of Fisheries and Aquatic Sciences, 57 (7). pp. 1448-1458.

Southgate, Paul C., and Beer, Andrew C. (2000) Growth of blacklip pearl oyster (Pinctada margaritifera) juveniles using different nursery culture techniques. Aquaculture, 187 (1-2). pp. 97-104.

Baird, A.H., and Babcock, R.C. (2000) Morphological differences among three species of newly settled pocilloporid coral recruits. Coral Reefs, 19 (2). pp. 179-183.

Sheaves, Marcus, and Molony, Brett (2000) Short-circuit in the mangrove food chain. Marine Ecology Progress Series, 199. pp. 97-109.

Stewart, Bryce D., and Beukers, Joanne S. (2000) Baited technique improves censuses of cryptic fish in complex habitats. Marine Ecology-Progress Series, 197. pp. 259-272.

Grutter, Alexandra S. (2000) Ontogenetic variation in the diet of the cleaner fish Labroides dimidiatus and its ecological consequences. Marine Ecology-Progress Series, 197. pp. 241-246.

Norton, John H., Lucas, John S., Turner, Ian, Mayer, Robert J., and Newnham, Raymond (2000) Approaches to improve cultured pearl formation in Pinctada margaritifera through use of relaxation, antiseptic application and incision closure during bead insertion. Aquaculture, 184 (1-2). pp. 1-17.

Pratchett, M., Vytopil, E., and Parks, P. (2000) Coral crabs influence the feeding patterns of crown-of-thorns starfish. Coral Reefs, 19 (1). p. 36.

Semmens, Jayson M., and Moltschaniwskyj, Natalie A. (2000) An examination of variable growth in the loliginid squid Sepioteuthis lessoniana: a whole animal and reductionist approach. Marine Ecology-Progress Series, 193. pp. 135-141.

Van Herwerden, Lynne, Gasser, Robin B., and Blair, David (2000) ITS-1 ribosomal DNA sequence variants are maintained in different species and strains of Echinococcus. International Journal for Parasitology, 30 (2). pp. 157-169.

Beer, Andrew C., and Southgate, Paul C. (2000) Collection of pearl oyster (family Pteriidae) spat at Orpheus Island, Great Barrier Reef (Australia). Journal of Shellfish Research, 19 (2). pp. 821-826.

Yukihira, H., Lucas, J.S., and Klumpp, D.W. (2000) Comparative effects of temperature on suspension feeding and energy budgets of the pearl oysters Pinctada margaritifera and P. maxima. Marine Ecology Progress Series, 195. pp. 179-188.

Bigelow, P.R., and Alexander, C.G. (2000) Diatoms on the cirri of tropical barnacles. Journal of the Marine Biological Association of the United Kingdom, 80 (4). pp. 737-738.

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Noonan, Sam Hamilton Croft (2022) Responses of corals and coral reef ecosystems to ocean acidification under variable temperature and light. PhD thesis, James Cook University.

Steinig, Eike Joachim (2021) Genomic epidemiology of community-associated Staphylococcus aureus in northern Australia and Papua New Guinea. PhD thesis, James Cook University.

Nayfa, Maria George (2020) Domestication in aquaculture fishes - elucidating the genetic consequences in Nile Tilapia (Oreochromis niloticus). PhD thesis, James Cook University.

Budd, Alyssa (2020) Epigenetic effects of temperature on sex change in barramundi, Lates calcarifer. PhD thesis, James Cook University.

Joyce, Melissa (2020) Understanding the nutritional requirements of redclaw (Cherax quadricarinatus): determining the apparent digestibility of raw materials and quantifying dietary lysine requirement. Masters (Research) thesis, James Cook University.

Sih, Tiffany L. (2019) Diving into the deep-end: investigating tropical deep-reef fish assemblages. PhD thesis, James Cook University.

Chakravarti, Leela J. (2019) Manipulation of coral photosymbionts for enhancing resilience to environmental change. PhD thesis, James Cook University.

McClure, Eva Claire (2019) No-take marine reserve performance under varying environmental and anthropogenic influences. PhD thesis, James Cook University.

Velu, Chinnathambi (2019) Potential of tropical filamentous cyanobacteria for low-cost bioremediation and bioproduct synthesis. PhD thesis, James Cook University.

Banh, Thi Quyen Quyen (2019) Sex differentiation of barramundi lates calcarifer – understanding male sexual development and its manipulation through exogenous steroids and non-steroidal aromatase inhibitor. PhD thesis, James Cook University.

Jurriaans, Saskia (2019) Thermal performance of scleractinian corals. PhD thesis, James Cook University.

Miller, Rachel Lynn (2019) Understanding stakeholder involvement in the policy and management of migratory taxa in the Australian marine environment: a case study approach. PhD thesis, James Cook University.

Loffler, Zoe (2019) The persistence of Sargassum communities on coral reefs: resilience and herbivory. PhD thesis, James Cook University.

Montanari, Stefano R. (2018) Causes and consequences of natural hybridisation among coral reef butterflyfishes (Chaetodon: Chaetodontidae). PhD thesis, James Cook University.

Vaughan, David Brendan (2018) Cleaner shrimp as biocontrols in aquaculture. PhD thesis, James Cook University.

MacDonald, Chancey (2018) Depth as refuge: depth gradients in ecological pattern, process, and risk mitigation among coral reef fishes. PhD thesis, James Cook University.

Johnson, Johanna (2018) Development and implementation of a vulnerability assessment tool to inform decision-making in socio-ecological systems. PhD thesis, James Cook University.

Jarrold, Michael D. (2018) Effects of diel CO₂ cycles on the early development and behaviour of coral reef fishes under ocean acidification. PhD thesis, James Cook University.

Trujillo-González, Alejandro (2018) Parasite threats from the ornamental fish trade. PhD thesis, James Cook University.

Bergseth, Brock J. (2018) Poaching in marine protected areas: drivers of and responses to illegal fishing. PhD thesis, James Cook University.

Noble, Tansyn Honi (2018) Selective breeding for tolerance to gill-associated virus in the black tiger shrimp, Penaeus monodon. PhD thesis, James Cook University.

Riskas, Kimberly Anne (2017) Addressing sources of data deficiency for sea turtles and fisheries in the Indian Ocean and Southeast Asia. PhD thesis, James Cook University.

Moorhead, Jonathan Allyn (2017) Broodstock management, development of rearing systems, and feeding regimes for larvae of the forktail blenny, Meiacanthus atrodorsalis. PhD thesis, James Cook University.

Hughes, Alec Tamana (2017) Demographic and reproductive characteristics of the squaretail coralgrouper (Plectropomus areolatus) in Solomon Islands. PhD thesis, James Cook University.

Nguyen Dinh Quang, Duy (2017) Developing hatchery culture of the tropical sea cucumber, Holothuria scabra, using micro-algae concentrates. PhD thesis, James Cook University.

Bastos Gomes, Giana (2017) Ecology and detection of harmful freshwater fish ciliate parasites Chilodonella spp. in aquaculture. PhD thesis, James Cook University.

Razaghi, Ali (2017) Evaluation of expression systems of recombinant human interferon gamma. PhD thesis, James Cook University.

Ram, Ravinesh (2017) Influence of processing techniques on quality and nutritional composition of the tropical sea cucumber Holothuria scabra. PhD thesis, James Cook University.

Matley, Jordan Kyle (2017) Investigation of coral trout (Plectropomus spp.) movement patterns and resource use: a multidisciplinary approach using acoustic telemetry and dietary indicators. PhD thesis, James Cook University.

Sparrow, Leanne (2017) Key factors influencing the occurrence and frequency of ciguatera. PhD thesis, James Cook University.

Nicolet, Katia Jane (2017) Vectors and environmental drivers of coral disease dynamics on the Great Barrier Reef. PhD thesis, James Cook University.

Brazenor, Alexander Karlis (2017) The biology of the cosmopolitan fish parasite Neobenedenia girellae. PhD thesis, James Cook University.

Militz, Thane A. (2017) A review of the Papua New Guinea marine aquarium fishery. PhD thesis, James Cook University.

Jones, Ben C. (2016) Addressing quality deficits in farmed barramundi: optimising flavour and quality through pre-harvest practices. PhD thesis, James Cook University.

Connolly, Niall Michael (2016) Bottom-up effects via heterotrophic pathways in invertebrate assemblages of tropical streams: nutrients, leaf litter and the relationship between productivity and diversity. PhD thesis, James Cook University.

Humanes Schumann, Adriana (2016) Combined effects of water quality and temperature on the early life history stages of the broadcast spawning coral Acropora tenuis. PhD thesis, James Cook University.

Emslie, Michael J. (2016) Effects of habitat versus fisheries management on spatio-temperal variation in fish assemblages on the Great Barrier Reef. PhD thesis, James Cook University.

Lienart, Govinda-Das Hugo (2016) Effects of temperature and food availability on the antipredator behaviour of juvenile coral reef fishes. PhD thesis, James Cook University.

Rocker, Melissa M. (2016) Effects of water quality on the health and condition of inshore corals. PhD thesis, James Cook University.

Brandl, Simon Johannes (2016) Functional niche partitioning in herbivorous coral reef fishes. PhD thesis, James Cook University.

Basiita, Rose Komugisha (2016) Genetic structure and biogeography of three commercially important African freshwater fishes: Lates niloticus, Bagrus docmak and Bagrus bayad. PhD thesis, James Cook University.

Lal, Monal M. (2016) Genetic structure, population connectivity and taxonomic identity of the black-lip pearl oyster Pinctada margaritifera (Bivalvia: Pteriidae), across its Indo-Pacific distribution. PhD thesis, James Cook University.

Boström Einarsson, Lisa (2016) Habitat degradation and competition for resources in coral reef fishes. PhD thesis, James Cook University.

Leahy, Susannah Marie (2016) Habitat determinants of Chaetodon butterflyfish and fishery-targeted coral reef fish assemblages in the central Philippines. PhD thesis, James Cook University.

Acheampong, Emmanuel Opoku (2016) Impact of roads on farm size, market participation, and forest cover change in rural Ghana. Masters (Research) thesis, James Cook University.

Ow, Yan Xiang (2016) Interactive effects of ocean acidification and declining water quality on tropical seagrass physiology. PhD thesis, James Cook University.

Collins, Geoffrey M. (2016) Phenotypic drivers of hypoxia tolerance in a tropical diadromous fish (Lates calcarifer). PhD thesis, James Cook University.

Poulos, Davina Elise (2016) Priority effects and the dynamics of coral reef fish assemblages. PhD thesis, James Cook University.

Dao, Hoc Tan (2016) Recruitment and genetic population genetics of spiny lobsters, Panulirus ornatus and P. homarus in the south-east Asian archipelago. PhD thesis, James Cook University.

Angell, Alex Raymond (2016) Seaweeds as an alternative crop for the production of protein. PhD thesis, James Cook University.

Gainsford, Ashton (2016) A multi-disciplinary evaluation of the hybrid anemonefish Amphiprion leucokranos: behaviour shaping evolutionary outcomes of hybridization. PhD thesis, James Cook University.

Berner, Florian (2015) Assessment & design of perfused microalgal biofilm cultivation processes. PhD thesis, James Cook University.

Trujillo González, Alejandro (2015) Behaviour, histopathology and immunobiology: interactions between the ectoparasite Neobenedenia (Monogenea: Capsalidae) and its host, Lates calcarifer (Perciformes: Latidae). Masters (Research) thesis, James Cook University.

Kramer, Michael John (2015) Crustacea on coral reefs: habitat associations and trophic relationships. PhD thesis, James Cook University.

Alajmi, Fahad F. (2015) Developing intensive culture techniques for the tropical copepod Parvocalanus crassirostris as a live feed for aquaculture. PhD thesis, James Cook University.

Stella, Jessica (2015) Effects of climate change-induced thermal stress and habitat degradation to the biodiversity and species composition of coral-associated invertebrates. PhD thesis, James Cook University.

Taylor, Brett McCully (2015) Environmental and fishery-induced effects on life histories and assemblages of parrotfishes. PhD thesis, James Cook University.

Thobejane, Tubake Refiloe (2015) Improvement of formulated feeds and feeding management for redclaw aquaculture in Australia. Masters (Research) thesis, James Cook University.

Lédée, Elodie Jacqueline Isabelle (2015) Improving understanding of spatial ecology through network analysis of acoustic monitoring data. PhD thesis, James Cook University.

Sheaves, Janine (2015) Influence of seasonal variability and salinity gradients on benthic invertebrate assemblages in tropical and subtropical Australian estuaries. PhD thesis, James Cook University.

Lober, Malwine (2015) Investigation of the aquaculture potential of an Australian freshwater prawn, Macrobrachium spinipes (Schenkel, 1902), with emphasis on spawning induction, larval and nursery culture. Masters (Research) thesis, James Cook University.

von Alvensleben, Nicolas (2015) Microalgal species prospecting and characterisation for salinity tolerance, nutrient remediation and bio-product potential. PhD thesis, James Cook University.

Rechetelo, Juliana (2015) Movement, habitat requirements, nesting and foraging site selection: a case study of an endangered granivorous bird, the Black-throated finch Poephila cincta cincta in north-eastern Australia. PhD thesis, James Cook University.

Jin, Young Koo (2015) Nature or nurture? Testing the correlation between stress tolerance and genotype in the coral Acropora millepora on the Great Barrier Reef. PhD thesis, James Cook University.

Gosch, Björn Jürgen (2015) Oil content and quality in tropical seaweeds. PhD thesis, James Cook University.

Jankowski, Matthew William (2015) Relationships among depth distributions, habitat specialisation and demography in coral reef fish communities. PhD thesis, James Cook University.

Lefèvre, Carine D. (2015) Small cryptic fishes on coral reefs: ecological effects of extreme life history traits. Masters (Research) thesis, James Cook University.

Shimada, Takahiro (2015) Spatial ecology and conservation of sea turtles in coastal foraging habitat. PhD thesis, James Cook University.

Hall, April Elizabeth (2015) Top-down control, trophic interactions, and the importance of predatory fishes on coral reefs. PhD thesis, James Cook University.

Rizzari, Justin R. (2015) Trophic impact of large predators on coral reefs and management implications. PhD thesis, James Cook University.

Robinson, Jan (2015) Vulnerability to fishing in reef fishes that aggregate. PhD thesis, James Cook University.

Pattiselanno, Freddy (2015) Wildlife hunting, alternative protein sources and biodiversity conservation on the Bird's Head Peninsula of West Papua, Indonesia. PhD thesis, James Cook University.

Schmidt, Katrin (2015) The ecological role of tadpoles in streams of the Australian Wet Tropics. PhD thesis, James Cook University.

Atherton, Jennifer Ann (2015) The effect of parental and embryonic predator environments on offspring. PhD thesis, James Cook University.

Allan, Bridie Jean Marie (2015) The effects of climate change on predator-prey interactions in coral reef fish. PhD thesis, James Cook University.

White, James Ryan (2015) The role of boldness and other personality traits in the ecology of juvenile marine fishes. PhD thesis, James Cook University.

Kerry, James Timothy (2015) The role of tabular structure in the ecology of large reef fishes. PhD thesis, James Cook University.

Casey, Jordan Marie (2015) The role of territorial grazers in coral reef trophic dynamics from microbes to apex predators. PhD thesis, James Cook University.

Hodge, Jennifer Reneé (2014) Biogeography and the evolution of coral reef fish species. PhD thesis, James Cook University.

Paley, Allison Susanna (2014) Colour polymorphism and its role in stress tolerance in the coral Acropora millepora on the Great Barrier Reef. PhD thesis, James Cook University.

van de Water, Johannes A.J.M. (2014) Corals under stress: a study of the coral innate immune system. PhD thesis, James Cook University.

Cowlishaw, Melissa (2014) Determinants of home range and territory size in coral reef fishes. PhD thesis, James Cook University.

Brooker, Rohan Maurice Ralfe (2014) Determinants of resource specialisation and its ecological consequences for the corallivorous filefish, Oxymonacanthus longirostris. PhD thesis, James Cook University.

Lema, Anaïs Kimberley (2014) Diversity, stability, and uptake of diazotrophic bacterial communities associated with corals of the Great Barrier Reef. PhD thesis, James Cook University.

Athauda, A.R. Saman Bandara (2014) Effect of culture environmental conditions on sex inversion of Asian seabass (barramundi), Lates calcarifer (Bloch). PhD thesis, James Cook University.

McLeod, Ian Michael (2014) Effects of ocean warming on the larval development of coral reef fishes. PhD thesis, James Cook University.

Domingos, Jose A.S. (2014) Filling in the gaps impeding the instigation of selective breeding programs in barramundi Lates calcarifer: fate of genetic diversity through to harvest, estimation of genetic parameters and early prediction of family growth based on cellular processes. PhD thesis, James Cook University.

Vučko, Matthew John (2014) Innovative antifouling technologies: microtexture and metal. PhD thesis, James Cook University.

Miller, Gabrielle May (2014) Intergenerational effects of climate change on a coral reef fish, Amphiprion melanopus. PhD thesis, James Cook University.

Adkins, Merritt Elizabeth (2014) Large bodied fish communities and drivers of use in the shallow waters of a coastal habitat mosaic. Masters (Research) thesis, James Cook University.

Huerlimann, Roger Stephan (2014) Microalgal lipid biosynthesis: phylogeny of acetyl-CoA carboxylase and gene expression patterns of key enzymes. PhD thesis, James Cook University.

Davis, Benjamin James (2014) Patterns and processes at multiple scales shape fish assemblage structure in tropical estuaries. PhD thesis, James Cook University.

Ma, Ka Yan (2014) Patterns and processes of diversification in groupers (family: Epinephelidae). PhD thesis, James Cook University.

Gordon, Matthew (2014) Quantifying ecological aspects of the seasonally abundant box jellyfish Chironex fleckeri within coastal and estuarine waters of Far North Queensland. PhD thesis, James Cook University.

Figa, Boga Soni (2014) Spatio-temporal dynamics and population biology of the Fly River Herring (Nematalosa papuensis): implications for freshwater lake management in Papua New Guinea. PhD thesis, James Cook University.

Mooney, Christopher James (2014) Statoliths of cubozoan jellyfishes: their utility to discriminate taxa and elucidate population ecology. PhD thesis, James Cook University.

Beeden, Roger John (2014) A dynamic understanding of coral reef health informs resilience-based management of the Great Barrier Reef. PhD thesis, James Cook University.

Abdul Wahab, Muhammad Azmi (2014) A holistic approach towards understanding population dynamics of a coral reef sponge. PhD thesis, James Cook University.

Welsh, Justin Quentin (2014) The spatial ecology of coral reef fishes. PhD thesis, James Cook University.

Heimann, Kirsten, Karthikeyan, Obulisamy Parthiba, Karthigeyan, C.P., and Cirés, Samuel (2013) A biotechnological approach to convert methane into bio-polymer. In: Posters from the Greenhouse 2013 Conference . From: Greenhouse 2013 Conference, 8-11 October 2013, Adelaide, SA, Australia. (Unpublished)

Heimann, Kirsten, Karthikayan, O. Parthiba, and Cirés, Samuel (2013) A biotechnological approach to mitigate green house gas emissions from coal mine ventilation air in Australia. In: UNSPECIFIED. . From: ICTW 2013: 1st International Conference on Technologies for Sustainable Waste Management in Developing Countries, 23-24 August 2013, Guntur, India. (Unpublished)

Cires, S., Alvarez Roa, C., Loza, V., Karthikeyan, O.P., and Heimann, K. (2013) Diazotrophic cyanobacteria for bioremediation of greenhouse gases in Australian coal mines: a promising source of biofuels and value-added products. In: UNSPECIFIED. From: 3rd International Conference on Algal Biomass, Biofuels and Bioproducts, 16-19 June 2013, Toronto, Canada. (Unpublished)

Ellison, Michael Brian (2013) Bioremediation of coal-fired power station waste water using freshwater filamentous algae from the genus Oedogonium. Masters (Research) thesis, James Cook University.

van der Meer, Martin H. (2013) Coming, going, gone?: Population connectivity and extinction risk in restricted range coral reef fishes on isolated islands. PhD thesis, James Cook University.

Beck, Emadch (2013) Comparative phylogeography of four Indo-Pacific scarine labrids: an insight into the evolutionary patterns of reef fish. PhD thesis, James Cook University.

MacIntosh, Hugh (2013) Competition and coexistence in tropical Australian shipworms. PhD thesis, James Cook University.

Warner, Patricia A. (2013) Evolutionary and ecological connectivity at hierarchical scales from sperm to species in the reef-building coral genus Seriatopora. PhD thesis, James Cook University.

Jones, David Byron (2013) Genomic resources and genetic dissection of complex quantitative traits in the silver-lipped pearl oyster, Pinctada maxima. PhD thesis, James Cook University.

Lamb, Joleah B. (2013) Influence of marine-based industries on coral health and disease. PhD thesis, James Cook University.

Newton, James Raymond (2013) Investigating the genetics of thermal tolerance and adaptation to temperature amongst populations of Australian barramundi (Lates calcarifer). PhD thesis, James Cook University.

Wu, Xugan (2013) Lipid nutrition of early life history of two commercially important tropical crustaceans, the blue swimmer crab (Portunus pelagicus) and the ornate rock lobster (Panulirus ornatus), with emphasis on highly unsaturated fatty acids. PhD thesis, James Cook University.

Lönnstedt, Oona Margareta (2013) Predator-prey interactions and the importance of sensory cues in a changing world. PhD thesis, James Cook university.

Raina, Jean-Baptiste (2013) Production and fate of dimethylsulfoniopropionate (DMSP) in reef-building corals and its integral role in coral health. PhD thesis, James Cook University.

Manassa, Rachel Penelope (2013) Social learning and its role in anti-predator behaviour by coral reef fishes. PhD thesis, James Cook University.

Stegemann, Krista Elizabeth (2013) Spatio-temporal patterns of faunal distribution along a near-pristine estuarine edge environment. Masters (Research) thesis, James Cook University.

Wenger, Amelia Scher (2013) Suspended sediment and its effects on the behavior and physiology of coral reef fishes. PhD thesis, James Cook University.

Goatley, Christopher Harry Robert (2013) The ecological role of sediments on coral reefs. PhD thesis, James Cook University.

Sato, Yui (2012) Ecology and microbiology of black band disease: new insights into the etiology of an old coral disease. PhD thesis, James Cook University.

Johansen, Jacob L. (2012) Energetics of habitat use in planktivorous coral reef fishes: does specialization confer sensitivity to changing environmental conditions? PhD thesis, James Cook University.

Torda, Gergely (2012) Genetic assessment of population structure and the origin of recruits in brooding corals: understanding population connectivity on the Great Barrier Reef on various timescales. PhD thesis, James Cook University.

Harrison, Hugo B. (2012) Genetic parentage analysis as a tool for measuring larval connectivity in a network of marine reserves. PhD thesis, James Cook University.

de Paula Silva, Pedro Henrique (2012) Green tide algae integrated aquaculture for nitrogen bioremediation. PhD thesis, James Cook University.

Templeman, Michelle Anne (2012) Investigating the potential of jellyfishes as marine biomonitors and bioindicators of metal pollution. PhD thesis, James Cook University.

Cetina Heredia, Paulina (2012) Modelling physical and biological drivers of larval retention in reef systems. PhD thesis, James Cook University.

Wen, Colin Kuo-Chang (2012) Recruitment hotspots in the ecology and management of large predatory fishes on coral reefs. PhD thesis, James Cook University.

Carl, Christina (2012) Surface-based technologies and the settlement of Mytilus galloprovincialis. PhD thesis, James Cook University.

Chua, Chia-Miin (2012) The effects of ocean acidification and warming on the early life history stages of corals. PhD thesis, James Cook University.

Graham, Erin Marie (2012) The energetics of scleractinian coral larvae and implications for dispersal. PhD thesis, James Cook University.

Camus, Thomas (2012) The improvement of copepods intensive culture protocols as live feeds for aquaculture hatcheries. PhD thesis, James Cook University.

Mitchell, Matthew David (2012) The role of chemical alarm cues in risk assessment and predator recognition in coral reef fishes. PhD thesis, James Cook University.

Fox, Rebecca J. (2012) The trophic and spatial ecology of rabbitfishes (Perciformes, Siganidae) on coral reefs. PhD thesis, James Cook University.

Donelson, Jennifer Marie (2011) Climate change and the future for coral reef fishes: the potential for acclimation. PhD thesis, James Cook University.

Howells, Emily (2011) Coral symbionts in warming seas: population dynamics, adaptation and acclimatisation of Symbiodinium. PhD thesis, James Cook University.

Cowman, Peter Francis (2011) Dating the evolutionary origins of coral reef fishes. PhD thesis, James Cook University.

Villacorta Rath, Ana Cecilia (2011) Determinants of selective mortality during the early life history of Spratelloides delicatulus in the northern Great Barrier Reef. Masters (Research) thesis, James Cook University.

Wassnig, Matthew (2011) Developing hatchery culture techniques for the winged pearl oyster, Pteria penguin (Röding, 1798). PhD thesis, James Cook University.

Haapkylä, Jessica (2011) Dynamics and drivers of coral disease on Indo-Pacific reefs. PhD thesis, James Cook University.

Botte, Emmanuelle (2011) Effects of pesticide exposure and thermal stress in a model tropical reef fish, the damselfish Acanthochromis polyacanthus. PhD thesis, James Cook University.

Kvingedal, Renate (2011) Environment, genes and the effects of genotype by environment (G x E) interactions, on the expression of commercially important traits in the silver-lipped pearl oyster, Pinctada maxima (Jameson). PhD thesis, James Cook University.

Horne, John Barton (2011) Evolutionary and ecological genetic patterns of widespread unicornfishes: investigations of the non-geographic clades phenomenon. PhD thesis, James Cook University.

McGinty, Erin Louise (2011) Genetic contribution to pearl formation. PhD thesis, James Cook University.

Ballagh, Debra Anne (2011) Intensive rearing techniques and feeding behaviour of larval and juvenile mulloway, Argyrosomus japonicus. PhD thesis, James Cook University.

De Santis, Christian (2011) Regulation of growth: understanding the myostatin functioning in two important aquaculture species, barramundi (Lates calcarifer) and black tiger shrimp (Penaeus monodon). PhD thesis, James Cook University.

Abesamis, Rene A. (2011) Replenishment and connectivity of reef fish populations in the central Philippines. PhD thesis, James Cook University.

Milione, Michael (2011) Reproduction and growth of the winged pearl oyster, Pteria penguin (Röding, 1798) in the Great Barrier Reef lagoon. PhD thesis, James Cook University.

Dixson, Danielle Lynn (2011) Smelling home: the use of olfactory cues for settlement site selection by coral reef fish larvae. PhD thesis, James Cook University.

Mat Noordin, Noordiyana (2011) Towards development of a formulated diet for blue swimmer crab, Portunus pelagicus with emphasis on lipid nutrition. PhD thesis, James Cook University.

Littman, Raechel (2011) The dynamics of bacterial populations associated with corals and the possible role of bacterial pathogens in coral bleaching. PhD thesis, James Cook University.

Luter, Heidi M. (2011) The effects of disease and stress on the microbial community of the sponge Ianthella basta. PhD thesis, James Cook University.

Devine, Brynn Michelle (2011) The effects of ocean acidification on habitat associations of coral reef fishes. Masters (Research) thesis, James Cook University.

Cumbo, Vivian Ruth (2011) The establishment and development of symbiosis in coral larvae. PhD thesis, James Cook University.

Palmer, Caroline V. (2010) Biological mechanisms of coral immunity. PhD thesis, James Cook University.

Nelson, P.N., Banabas, M., Webb, M.J., Sheaves, M., Huth, N., McNeill, A., Koczberski, G., Berthelsen, S., and Orrell, I. (2010) Environmental sustainability indicators for oil palm in Papua New Guinea – conceptual framework for a research and development project. In: Agri-environmental Indicators Workshop, associated with the 2nd International Conference on Oil Palm and the Environment (ICOPE). From: Agri-environmental Indicators Workshop, associated with the 2nd International Conference on Oil Palm and the Environment (ICOPE), 23-27 February 2010, Bali, Indonesia. (Unpublished)

Romano, Nicholas (2010) Investigating the survival, growth and osmoregulatory responses of blue swimmer crab, Portunus pelagicus, early juveniles to salinity and ammonia challenge. PhD thesis, James Cook University.

Pollock, Frederic Joseph (2010) Phylogeny of the coral pathogen Vibrio coralliilyticus and the development of a qPCR-based diagnostic assay for its detection. Masters (Research) thesis, James Cook University.

Peverell, Stirling Charles (2010) Sawfish (Pristidae) of the Gulf of Carpentaria, Queensland, Australia. Masters (Research) thesis, James Cook University.

Lee, Anne Michelle (2010) Spatio-temporal factors affecting the growth of cultured silver-lip pearl oyster, Pinctada maxima (Jameson) (Mollusca: Pteriidae) in West Papua, Indonesia. PhD thesis, James Cook University.

Fraser, Matthew Robert (2009) Egg predation at tropical reef fish spawning aggregation sites: trade-offs for fitness. PhD thesis, James Cook University.

Edmunds, Richard C. (2009) Evidence for thermal adaptation among geographically, genetically and thermally distinct populations of the Australian barramundi, Lates calcarifer (Bloch 1790): a multi-level approach. PhD thesis, James Cook University.

Williamson, David (2009) Fishery effects and benefits of marine protected areas within the Great Barrier Reef Marine Park. PhD thesis, James Cook University.

Evans, Richard (2009) No-take marine protected areas: abundance, biomass, batch fecundity and genetic connectivity of target species on the Great Barrier Reef. PhD thesis, James Cook University.

Walker, Stefan Peter William (2009) Phenotypic plasticity across natural- and sexual-selection gradients in a reef fish. PhD thesis, James Cook University.

Lind, Curtis E. (2009) Population genetics, phylogeography and the effects of aquaculture on genetic diversity of the silver-lipped pearl oyster, Pinctada maxima (Jameson). PhD thesis, James Cook University.

Holmes, Thomas (2009) Processes and mechanisms of predatory interactions on newly settled reef fish. PhD thesis, James Cook University.

Richards, Zoe Trisha (2009) Rarity in the coral genus Acropora: implications for biodiversity conservation. PhD thesis, James Cook University.

Pirozzi, Igor (2009) A factorial approach to defining the dietary protein and energy requirements of mulloway, Argyrosomus japonicus : optimising feed formulations and feeding strategies. PhD thesis, James Cook University.

Hoogenboom, Mia O. (2008) Physiological models of performance for scleractinian corals. PhD thesis, James Cook University.

Holme, May-Helen (2008) Towards development of a formulated diet for mud crab (Scylla serrata) larvae, with emphasis on lipid nutrition. PhD thesis, James Cook University.

Busilacchi, Sara (2008) The subsistence coral reef fish fishery in the Torres Strait: monitoring protocols and assessment. PhD thesis, James Cook University.

Sheaves, Marcus, Connolly, Rod, and Johnston, Ross (2007) Assessment of Techniques for Determining the Health of Tropical Estuarine Ecosystems. Report. Marine and Tropical Sciences Research Facility, Cairns. (Unpublished)

Ranatunga, R.R.M.K.P. (2007) Demographic patterns in coral reef fishes: biogeographic trends and fishing effects. PhD thesis, James Cook University.

Curley, Belinda G. (2007) Estimating dispersal and population connectivity for temperate reef fishes at multiple spatial scales. PhD thesis, James Cook University.

Bergenius, Mikaela A.J. (2007) Stock structure of a coral reef fish, Plectropomus leopardus: identification and implications for harvest strategy evaluation. PhD thesis, James Cook University.

Martínez-Fernández, Erika (2007) Use of tropical microalgae species as food for pearl oyster (Pinctada margaritifera L.) larvae. PhD thesis, James Cook University.

Feary, David A. (2007) The influence of coral degradation on tropical fish community structure. PhD thesis, James Cook University.

Louden, Daniel James (2006) Bath sponge aquaculture: aspects of culture and quality. Masters (Research) thesis, James Cook University.

Scardino, Andrew J. (2006) Biomimetic fouling control. PhD thesis, James Cook University.

Mutz, Stephanie J. (2006) Comparative growth dynamics of Acanthurid fishes. Masters (Research) thesis, James Cook University.

Lloyd, Julie Anne (2006) Demography of Pristipomoides multidens in northern Australia and a comparison within the Family Lutjanidae with respect to depth. PhD thesis, James Cook University.

Berumen, Michael Lee (2006) Influence of resource availability on lifehistory traits in coral-feeding butterflyfishes (Pisces: Chaetodontidae). PhD thesis, James Cook University.

Bendell, Barry E. (2006) Interactions amongst invertebrates, epiphytes, and seagrasses in tropical intertidal meadows. PhD thesis, James Cook University.

Ettinger-Epstein, Piers (2006) Natural products and their supply from the tropical sponge Luffariella variabilis. PhD thesis, James Cook University.

Eagle, Janelle Vinita (2006) Recruitment hotspots around a coral reef: the roles of hydrodynamics and habitats. PhD thesis, James Cook University.

Srinivasan, Maya (2006) Recruitment in time and space: the dynamics and distributions of reef fish populations on a low latitude coral reef. PhD thesis, James Cook University.

Sofonia, Jeremy (2006) Sediment responses of corals from inshore reefs, Great Barrier Reef, Australia. Masters (Research) thesis, James Cook University.

Depczynski, Martial (2006) Small cryptic fishes on coral reefs : a new perspective on reef fish ecology and life histories. PhD thesis, James Cook University.

Boyett, Holly Virginia (2006) The ecology and microbiology of black band disease and brown band syndrome on the Great Barrier Reef. Masters (Research) thesis, James Cook University.

Gagliano, Monica (2006) The role of early life history traits on the survival of a coral reef fish. PhD thesis, James Cook University.

Sapolu, Tebaua (2005) Age-based demography and reproductive ontogeny of angelfishes belonging to the family Pomacanthidae. Masters (Research) thesis, James Cook University.

Herbert, Brett (2005) Feeding and growth of golden perch (Macquaria ambigua), and assessment of its potential for aquaculture. PhD thesis, James Cook University.

Konow, Nicolai (2005) Feeding ecomorphology in angelfishes, f. Pomacanthidae: the implications of functional innovations on prey-dislodgement in biting reef fishes. PhD thesis, James Cook University.

Horne, Michael Gary (2005) Investigation into development and preparation of 'artificial' food particles for tropical rock lobster, Panulirus ornatus, phyllosoma. Masters (Research) thesis, James Cook University.

Marriott, Ross James (2005) Population biology, dynamics and their implications for management of red bass: a large, long-lived reef fish. PhD thesis, James Cook University.

Smith, Luke Darren (2005) Resilience and recovery of coral communities on an isolated reef system in Western Australia following a catastrophic mortality event. PhD thesis, James Cook University.

Flint, Nicole (2005) Sublethal effects of diel fluctuations in dissolved oxygen saturation on freshwater fishes from tropical Queensland. PhD thesis, James Cook University.

Gershwin, Lisa-ann (2005) Taxonomy and phylogeny of Australian cubozoa. PhD thesis, James Cook University.

Fulton, Christopher John (2005) Wave energy and the role of swimming in reef fish ecology. PhD thesis, James Cook University.

Claydon, John Alexander Brightman (2005) The structure and dynamics of spawning aggregations of coral reef fish. PhD thesis, James Cook University.

Wolstenholme, Jacqueline K. (2004) Analysis of intraspecific and interspecific variation using reproductive and molecular evidence to interpret evolutionary relationships in a scleractinian coral species complex. In: 10th International Coral Reef Symposium. p. 141. From: 10th International Coral Reef Symposium Abstracts: stability and degradation of coral reef ecosystems, 28 June - 2 July 2004, Okinawa, Japan. (Unpublished)

Wei, Nu-Wei V., Wallace, Carden C., Lin, Ho-I, Wolstenholme, Jackie, Dai, Chang-Feng, and Chen, Chaolun A. (2004) Evaluation of molecular makers for species phylogeny of genus Acropora (Cnidaria; Scleractinia; Acroporidae). In: 10th International Coral Reef Symposium. p. 141. From: 10th International Coral Reef Symposium Abstracts: stability and degradation of coral reef ecosystems, 28 June - 2 July 2004, Okinawa, Japan. (Unpublished)

Acosta-Salmon, Hector (2004) Broodstock management and egg quality of the pearl oysters Pinctada margaritifera and Pinctada fucata. PhD thesis, James Cook University.

Genodepa, Jerome (2004) Development of a formulated diet for mud crab, Scylla sewata, larvae. Masters (Research) thesis, James Cook University.

Harrington, Lindsay Mortan (2004) Ecology of crustose coralline algae; interactions with scleractinian corals and responses to environmental conditions. PhD thesis, James Cook University.

Pit, Josiah Henk (2004) Feasibility of Akoya pearl oyster culture in Queensland. PhD thesis, James Cook University.

Ceccarelli, Daniela Monica (2004) Herbivorous fishes as determinants of the structure of coral reef communities: farmers, foragers and their interactions. PhD thesis, James Cook University.

True, James (2004) Massive Porites corals as indicators of environmental changes. PhD thesis, James Cook University.

Rotmann, Sandra (2004) Tissue thickness as a tool to monitor the stress response of massive porites corals to turbidity impact on Lihir Island, Papua New Guinea. PhD thesis, James Cook University.

Badger, Amanda Catherine (2004) The effects of nutrition on reproduction in the Eastern Rainbowfish, Melanotaenia splendida splendida. Masters (Research) thesis, James Cook University.

Madin, Joshua Simon (2004) A mechanistic approach to understanding and predicting hydrodynamic disturbance on coral reefs. PhD thesis, James Cook University.

Laman Trip, Elisabeth Daniele (2004) A multi-scale analysis of population dynamics and sexual size dimorphism in a widely distributed coral reef fish family (Acanthuridae). Masters (Research) thesis, James Cook University.

Vallejo, Benjamin (2003) Biogeography of coral reef shore gastropods in the Philippines. PhD thesis, James Cook University.

Wolstenholme, Jacqueline Kerri (2003) Species boundaries in scleractinian corals: a case study of the Acropora humilis species group. PhD thesis, James Cook University.

Bastidas, Ana Carolina (2002) Population dynamics and genetic structure of locally dominant species on coral reefs: a case study of the soft corals Sinularia flexibilis and Clavularia koellikeri. PhD thesis, James Cook University.

Bellwood, Orpha (2002) Systematics, biogeography and functional morphology of the Box Crabs (Family Calappidae). PhD thesis, James Cook University.

Fisher, Rebecca (2002) The functional capabilities of reef fish larvae: implications for dispersal during the pelagic phase. PhD thesis, James Cook University.

Berkelmans, Ray (2001) Bleaching, upper thermal limits and temperature adaptation in reef corals. PhD thesis, James Cook University.

Jompa, Jamaluddin (2001) Interactions between macroalgae and scleractinian corals in the context of reef degradation. PhD thesis, James Cook University.

Baird, Andrew Hamilton (2001) The ecology of coral larvae: settlement patterns, habitat selection and the length of the larval phase. PhD thesis, James Cook University.

Wilson, Shaun Kevin (2001) An investigation into the trophic nature of small reef fish from the tribe Salariini, family Blenniidae. PhD thesis, James Cook University.

Chang, Marshall C. (2000) Improvement of culture techniques for the seahorse Hippocampus sp. Masters (Research) thesis, James Cook University.

Baird, A., Marshall, Paul, and Wolstenholme, Jackie (2000) Mass spawning of Acropora in the coral sea. In: Abstracts of the Ninth International Coral Reef Symposium. p. 95. From: World Coral Reefs in the New Millenium: bridging research and management for sustainable development, 23-27 October 2000, Bali, Indonesia. (Unpublished)

Wallace, C.C., Paulay, G., Hoeksema, B.W.H., Bellwood, D.R., Hutchings, P., Barber, P.H., Erdmann, M., and Wolstenholme, J. (2000) Nature and origins of unique high diversity reef faunas in the Bay of Tomini, Central Sulawesi: the ultimate "Centre of Diversity"? In: Abstracts of the Ninth International Coral Reef Symposium. p. 46. From: World Coral Reefs in the New Millenium: bridging research and management for sustainable development, 23-27 October 2000, Bali, Indonesia. (Unpublished)

Cavanagh, Jo-Anne Elizabeth (2000) Organochlorine insecticide usage in the sugar industry of the Herbert and Burdekin River regions: chemical, biological, and risk assessments. PhD thesis, James Cook University.

Samoilys, Melita Anne (2000) Reproductive dynamics of an exploited serranid on the Great Barrier Reef. PhD thesis, James Cook University.

Michalek-Wagner, Kirsten (1999) The chemical ecology of the soft coral-zooxanthellae association and its signficance to the bleaching process. PhD thesis, James Cook University.

Munday, Philip L. (1999) The relationship between habitat use and the population ecology of coral-dwelling fishes (genus Gobiodon). PhD thesis, James Cook University.

Syms, Craig (1998) Habitat association, disturbance dynamics, and the role of spatial scale in structuring coral reef fish assemblages. PhD thesis, James Cook University.

Hall, Vicki R (1998) Injury and regeneration of reef-crest corals at Lizard Island, Great Barrier Reef, Australia. PhD thesis, James Cook University.

Stewart, Bryce D. (1998) Interactions between piscivorous coral reef fish and their prey. PhD thesis, James Cook University.

van Herwerden, Lynne (1998) The trematode genera Paragonimus and Schistosoma in East Asia: molecular evolution, phylogeny and biogeography. PhD thesis, James Cook University.

Fisk, David Anthony (1997) The role of recruitment in coral community regeneration. PhD thesis, James Cook University.

Purcell, Steven William (1997) The role of sediments in epilithic algal communities on coral reefs. PhD thesis, James Cook University.

Zeller, Dirk Christoph (1996) Patterns of movement of Plectropomus leopardus (Serranidae) in relation to spawning aggregations and marine protected areas, as determined by ultrasonic telemetry. PhD thesis, James Cook University.

Beukers, Joanne S. (1996) The relative roles of recruitment and post-recruitment processes in the regulation of a coral reef damselfish population. PhD thesis, James Cook University.

Santurtun, Marina (1995) Catch structure and dynamics of Antillean "Z" traps on a coral reef: interaction between trap characteristics and fish behaviour. Masters (Research) thesis, James Cook University.

Sheaves, Marcus John (1995) Estuaries as juvenile habitats for lutjanid and serranid fishes in tropical northeastern Australia. PhD thesis, James Cook University.

St John, Jill (1995) Feeding ecology of the coral trout, Plectropomus leopardus (Serranidae), on the Great Barrier Reef, Australia. PhD thesis, James Cook University.

Davies, Campbell Robert (1995) Patterns of movement of three species of coral reef fish on the Great Barrier Reef. PhD thesis, James Cook University.

Newman, Stephen John (1995) Spatial variability in the distribution, abundance, growth, mortality and age structures of tropical snappers (Pisces: Lutjanidae) in the Central Great Barrier Reef, Australia. PhD thesis, James Cook University.

Alderslade, Philip Norman (1995) Taxonomic studies within the gorgonian family Isididae (Coelenterata: Octocorallia). PhD thesis, James Cook University.

Lheknim, Vachira (1995) An evaluation of the relative nursery value of sandy shore surf zones and estuary mouths in tropical North Queensland, Australia. PhD thesis, James Cook University of North Queensland.

Shand, Julia (1994) Changes in the visual system of teleost fishes during growth and settlement: an ecological perspective. PhD thesis, James Cook University.

Stobart, Ben (1994) Delimiting coral species using alternative techniques: Montipora digitata (Dana, 1846), a case study. PhD thesis, James Cook University.

Grutter, Alexandra Sara (1994) Parasites in the cleaning interactions between Labroides dimidiatus and fish. PhD thesis, James Cook University.

Green, Alison Lesley (1994) The early life history of labroid fishes at Lizard Island, Northern Great Barrier Reef. PhD thesis, James Cook University.

Butler, Ian Robert Jacques (1994) An investigation into what constitutes lethal wounding in Acanthaster planci and an assessment of the effects of regeneration on gonad production. Masters (Research) thesis, James Cook University of North Queensland.

Martin-Smith, Keith Michael (1994) The role of epifaunal crustaceans on Sargassum spp. at Magnetic Island, Great Barrier Reef, Australia. PhD thesis, James Cook University.

Ferreira, Beatrice Padovani (1993) Age, growth, reproduction and population biology of Plectropomus spp (Epinephelinae: Serranidae) on the Great Barrier Reef, Australia. PhD thesis, James Cook University.

Thorrold, Simon Robert (1993) Meso-scale patterns in the distribution of larval fishes across the central Great Barrier Reef lagoon and relationships with environmental variability. PhD thesis, James Cook University.

Molony, Brett Wymond (1993) The use of multiple indices in the description of growth in the tropical estuarine fish Ambassis vachelli, Richardson (Pisces: Chandidae), with reference to the effects of feeding history. PhD thesis, James Cook University.

van Woesik, Robert (1992) Ecology of coral assemblages on continental islands in the southern section of the Great Barrier Reef, Australia. PhD thesis, James Cook University.

Chongprasith, Pornsook (1992) Nutrient release and nitrogen transformations resulting from resuspension of Great Barrier Reef shelf sediments. PhD thesis, James Cook University of North Queensland.

McCormick, Mark Ian (1992) The influence of pelagic life history on the quality of tropical goatfish (family Mullidae) at settlement. PhD thesis, James Cook University.

Clements, Kendall David (1991) Gut microorganisms of surgeonfishes (family Acanthuridae). PhD thesis, James Cook University of North Queensland.

Cabanban, Annadel Salvio (1991) The dynamics of leiognathidae in a tropical demersal ichthyofaunal community. PhD thesis, James Cook University.

Fromont, Jane (1990) A taxonomic study of tropical marine sponges (Porifera: Demospongiae: Haplosclerida and Petrosida) using morphological, chemical and reproductive character sets. PhD thesis, James Cook University.

Willis, Bette Lynn (1987) Morphological variation in the reef corals Turbinaria esenterina and Pavona cactus: synthesis of transplant, histocompatibility, electrophoresis, growth, and reproduction studies. PhD thesis, James Cook University.

Babcock, Russell Clayton (1986) A comparison of the population ecology of reef flat corals of the family Faviidae (Goniastrea, Platygyra). PhD thesis, James Cook University.

Perez, Orpha Salatandre (1985) Studies on the biology of the Indo-Pacific sandy shore crab, Matuta lunaris Forskål (Brachyura: Calappidae). Masters (Research) thesis, James Cook University.

Bellwood, David Roy (1985) The functional morphology, systematics and behavioural ecology of parrotfishes (family Scaridae). PhD thesis, James Cook University.

Collins, John Douglas (1978) A study of the interactive biology of corals. PhD thesis, James Cook University.

This list was generated on Sun Jan 8 06:29:00 2023 AEST.