Publications by: Marine & Aquaculture Sciences

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Rueger, T., Gardiner, N.M., and Jones, G.P. (2016) Homing is not for everyone: displaced cardinalfish find a new place to live. Journal of Fish Biology, 89 (4). pp. 2182-2188. (In Press)

Vaughan, David Brendan, Grutter, Alexandra Sara, Costello, Mark John, and Hutson, Kate (2016) Cleaner fish and shrimp diversity and a critical evaluation of cleaning symbiosis. Fish and Fisheries. (In Press)

Bradley, Michael, Baker, Ronnie, and Sheaves, Marcus (2016) Hidden components in tropical seascapes: deep-estuary habitats support unique fish assemblages. Estuaries and Coasts. pp. 1-12. (In Press)

McLeod, Ian M., Jones, Rhondda E., Jones, Geoffrey P., Takahashi, Miwa, and McCormick, Mark I. (2016) Interannual variation in the larval development of a coral reef fish in response to temperature and associated environmental factors. Marine Biology. (In Press)

Mustika, Putu, Welters, Riccardo, Ryan, Gerard Edward, D'Lima, Coralie, Sorongon-Yap, Patricia, Jutapruet, Suwat, and Peter, Cindy (2016) A rapid assessment of wildlife tourism risk posed to cetaceans in Asia. Journal of Sustainable Tourism. pp. 1-21. (In Press)

McCormick, Mark I., Chivers, Douglas P., Allan, Bridie J.M., and Ferrari, Maud C.O. (2017) Habitat degradation disrupts neophobia in juvenile coral reef fish. Global Change Biology, 23. pp. 719-727.

Pratchett, Morgan S., Dworjanyn, Symon, Mos, Benjamin, Caballes, Ciemon F., Thompson, Cassandra A., and Blowes, Shane (2017) Larval survivorship and settlement of crown-of-thorns starfish (Acanthaster cf. solaris) at varying algal cell densities. Diversity, 9 (1). pp. 1-11.

Casey, Jordan M., Baird, Andrew H., Brandl, Simon J., Hoogenboom, Mia O., Rizzari, Justin R., Frisch, Ashley J., Mirbach, Christopher E., and Connolly, Sean R. (2017) A test of trophic cascade theory: fish and benthic assembalges across a predator density gradient on coral reefs. Oecologia, 183 (1). pp. 161-175.

Rueger, Theresa, Gardiner, Naomi M., and Jones, Geoffrey P. (2016) Size matters: male and female mate choice leads to size-assortative pairing in a coral reef cardinalfish. Behavioral Ecology and Sociobiology, 27 (6). pp. 1585-1591.

Kinley, Robert D., Vucko, Matthew J., Machado, Lorenna, and Tomkins, Nigel W. (2016) In vitro evaluation of the antimethanogenic potency and effects on fermentation of individual and combinations of marine macroalgae. American Journal of Plant Sciences, 7 (14). pp. 2038-2054.

Warren, Donald T., Donelson, Jennifer M., McCormick, Mark I., Ferrari, Maud C.O., and Munday, Philip L. (2016) Duration of exposure to elevated temperature affects competitive interactions in juvenile reef fishes. PLoS ONE, 11 (10). pp. 1-13.

Machado, Lorenna, Magnusson, Marie, Paul, Nicholas A., Kinley, Robert, de Nys, Rocky, and Tomkins, Nigel (2016) Identification of bioactives from the red seaweed Asparagopsis taxiformis that promote antimethanogenic activity in vitro. Journal of Applied Phycology, 28 (5). pp. 3117-3126.

Lienart, Govinda D.H., Ferrari, Maud C.O., and McCormick, Mark I. (2016) Thermal environment and nutritional condition affect the efficacy of chemical alarm cues produced by prey fish. Environmental Biology of Fishes, 99 (10). pp. 729-739.

Brooker, Rohan M., Feeney, William E., White, James R., Manassa, Rachel P., Johansen, Jacob L., and Dixson, Danielle L. (2016) Using insights from animal behaviour and behavioural ecology to inform marine conservation initiatives. Animal Behaviour, 120. pp. 211-221.

Nadler, Lauren E., Killen, Shaun S., McClure, Eva C., Munday, Philip L., and McCormick, Mark I. (2016) Shoaling reduces metabolic rate in a gregarious coral reef fish species. Journal of Experimental Biology, 219 (18). pp. 2802-2805.

Malerba, Martino E., Heimann, Kirsten, and Connolly, Sean R. (2016) Improving dynamic phytoplankton reserve-utilization models with an indirect proxy for internal nitrogen. Journal of Theoretical Biology, 404. pp. 1-9.

Boynton, Rebekah, Swinbourne, Anne, McShane, Connar, and Sheaves, Marcus (2016) Promoting resilience in regional Australian industries: a case study of the North Queensland commercial fishing industry. In: [Presented at the Australian Regional Development Conference 2016]. From: Australian Regional Development Conference 2016, 5-6 September 2016, Canberra, ACT, 2016.

Meyer, Lauren, Capper, Angela, Carter, Steve, and Simpfendorfer, Colin (2016) An investigation into ciguatoxin bioaccumulation in sharks. Toxicon, 119. pp. 234-243.

Kelly, Lisa A., Heintz, Tom, Lamb, Joleah B., Ainsworth, Tracy D., and Willis, Bette L. (2016) Ecology and pathology of novel plaque-like growth anomalies affecting a reef-building coral on the Great Barrier Reef. Frontiers in Marine Science, 3. pp. 1-12.

Lédée, Elodie J.I., Heupel, Michelle R., Tobin, Andrew J., Mapleston, Amos, and Simpfendorfer, Colin A. (2016) Movement patterns of two carangid species in inshore habitats characterised using network analysis. Marine Ecology Progress Series, 553. pp. 219-232.

Kishore, Pranesh, and Southgate, Paul C. (2016) A detailed description of pearl-sac development in the black-lip pearl oyster, Pinctada margaritifera (Linnaeus 1758). Aquaculture Research, 47 (7). pp. 2215-2226.

Cinner, Joshua Eli, Pratchett, Morgan Stuart, Graham, Nicholas Anthony James Graham, Messmer, Vanessa, Fuentes, Mariana Menezes Prata Bezerra, Ainsworth, Tracy, Ban, Natalie, Bay, Line Kolind, Blythe, Jessica, Dissard, Delphine, Dunn, Simon, Evans, Louisa, Fabinyi, Michael, Fidelman, Pedro, Figueiredo, Joana, Frisch, Ashley, Fulton, Christopher John, Hicks, Christina Chemtai, Lukoschek, Vimoksalehi, Mallela, Jenny, Moya, Aurelie, Penin, Lucie, Rummer, Jodie Lynn, Walker, Stefan, and Williamson, David Hall (2016) A framework for understanding climate change impacts on coral reef social–ecological systems. Regional Environmental Change, 16 (4). pp. 1133-1146.

Hopf, Jess K., Jones, Geoffrey P., Williamson, David H., and Connolly, Sean R. (2016) Synergistic effects of marine reserves and harvest controls on the abundance and catch dynamics of a coral reef fishery. Current Biology, 26 (12). pp. 1543-1548.

Magnusson, Marie, Carl, Christina, Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2016) Seaweed salt from Ulva: a novel first step in a cascading biorefinery model. Algal Research, 16. pp. 308-316.

Simpfendorfer, Colin A., Kyne, Peter M., Noble, Tansyn H., Goldsbury, Julie, Basiita, Rose K., Lindsay, Rob, Shields, Amos, Perry, Camillus, and Jerry, Dean R. (2016) Environmental DNA detects critically endangered largetooth sawfish in the wild. Endangered Species Research, 30. pp. 109-116.

Cole, Andrew, Dinburg, Yakov, Haynes, Brian S., He, Yaya, Herskowitz, Moti, Jazrawi, Christopher, Landau, Miron, Liang, Xiao, Magnusson, Marie, Maschmeyer, Thomas, Masters, Anthony F., Meiri, Nora, Neveux, Nicolas, de Nys, Rocky, Paul, Nicholas, Rabaev, Moshe, Vidruk-Nehemya, Roxana, and Yuen, Alexander K.L. (2016) From macroalgae to liquid fuel via waste-water remediation, hydrothermal upgrading, carbon dioxide hydrogenation and hydrotreating. Energy & Environmental Science, 9 (5). pp. 1828-1840.

Harry, Alastair V., Saunders, Richard J., Smart, Jonathan J., Yates, Peter M., Simpfendorfer, Colin A., and Tobin, Andrew J. (2016) Assessment of a data-limited, multi-species shark fishery in the Great Barrier Reef Marine Park and south-east Queensland. Fisheries Research, 177. pp. 104-115.

Kramer, M.J., Bellwood, O., and Bellwood, D.R. (2016) Foraging and microhabitat use by crustacean-feeding wrasses on coral reefs. Marine Ecology Progress Series, 548. pp. 277-282.

Smart, Jonathan J., Chin, Andrew, Baje, Leontine, Green, Madeline E., Appleyard, Sharon A., Tobin, Andrew J., Simpfendorfer, Colin A., and White, William T. (2016) Effects of including misidentified sharks in life history analyses: a case study on the grey reef shark Carcharhinus amblyrhynchos from Papua New Guinea. PLoS ONE, 11 (4). pp. 1-18.

Riskas, Kimberly A., Fuentes, Mariana M.P.B., and Hamann, Mark (2016) Justifying the need for collaborative management of fisheries bycatch: a lesson from marine turtles in Australia. Biological Conservation, 196. pp. 40-47.

von Alvensleben, Nicolas, Magnusson, Marie, and Heimann, Kirsten (2016) Salinity tolerance of four freshwater microalgal species and the effects of salinity and nutrient limitation on biochemical profiles. Journal of Applied Phycology, 28 (2). pp. 861-876.

Abom, Rickard, and Schwarzkopf, Lin (2016) Short-term responses of reptile assemblages to fire in native and weedy tropical savannah. Global Ecology and Conservation, 6. pp. 58-66.

Ow, Y.X., Vogel, N., Collier, C.J., Holtum, J.A.M., Flores, F., and Uthicke, S. (2016) Nitrate fertilisation does not enhance CO₂ responses in two tropical seagrass species. Scientific Reports, 6. pp. 1-10.

Jones, B., Smullen, R., and Carton, A.G. (2016) Flavour enhancement of freshwater farmed barramundi (Lates calcarifer), through dietary enrichment with cultivated sea lettuce, Ulva ohnoi. Aquaculture, 454. pp. 192-198.

Karthikeyan, Obulisamy Parthiba, Chidambarampadmavathy, Karthigeyan, Nadarjan, Saravanan, and Heimann, Kirsten (2016) Influence of nutrients on oxidation of low level methane by mixed methanotrophic consortia. Environmental Science and Pollution Research, 23 (5). pp. 4346-4357.

Hughes, T.P., Cameron, D.S., Chin, A., Connolly, S.R., Day, J.C., Jones, G.P., McCook, L., McGinnity, P., Mumby, P.J., Pears, R.J., Pressey, R.L., Russ, G.R., Tanzer, J., Tobin, A., and Young, M.A.L. (2016) A critique of claims for negative impacts of Marine Protected Areas on fisheries. Ecological Applications, 26 (2). pp. 637-641.

Young, Matthew A.L., Foale, Simon, and Bellwood, David (2016) The last marine wilderness: spearfishing for trophy fishes in the Coral Sea. Environmental Conservation, 43 (1). pp. 90-95.

Espinoza, Mario, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2016) Evidence of partial migration in a large coastal predator: opportunistic foraging and reproduction as key drivers? PLoS ONE, 11 (2). pp. 1-22.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., and Zenger, Kyall R. (2016) Fishing for divergence in a sea of connectivity: the utility of ddRADseq genotyping in a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera. Marine Genomics, 25. pp. 57-68.

D'Anastasi, B.R., van Herwerden, L., Hobbs, J.A., Simpfendorfer, C.A., and Lukoschek, V. (2016) New range and habitat records for threatened Australian sea snakes raise challenges for conservation. Biological Conservation, 194. pp. 66-70.

Mata, Leonardo, Magnusson, Marie, Paul, Nicholas A., and de Nys, Rocky (2016) The intensive land-based production of the green seaweeds Derbesia tenuissima and Ulva ohnoi: biomass and bioproducts. Journal of Applied Phycology, 28 (1). pp. 365-375.

Angell, Alex R., Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2016) The protein content of seaweeds: a universal nitrogen-to-protein conversion factor of five. Journal of Applied Phycology, 28 (1). pp. 511-524.

Kishore, Pranesh, and Southgate, Paul C. (2016) The effect of different culture methods on the quality of round pearls produced by the black-lip pearl oyster Pinctada margaritifera (Linnaeus, 1758). Aquaculture, 451. pp. 65-71.

Johansson, Charlotte L., Paul, Nicholas A., de Nys, Rocky, and Roberts, David A. (2016) Simultaneous biosorption of selenium, arsenic and molybdenum with modified algal-based biochars. Journal of Environmental Management, 165. pp. 117-123.

Steinig, Eike J., Neuditschko, Markus, Khatkar, Mehar S., Raadsma, Herman W., and Zenger, Kyall R. (2016) NETVIEW P: a network visualization tool to unravel complex population structure using genome-wide SNPs. Molecular Ecology Resources, 16 (1). pp. 216-227.

Fuentes, Marianna M.P.B., Chambers, Lynda, Chin, Andrew, Dann, Peter, Dobbs, Kirstin, Marsh, Helene, Poloczanska, Elvira S., Maison, Kim, Turner, Malcolm, and Pressey, Robert L. (2016) Adaptive management of marine mega-fauna in a changing climate. Mitigation and Adaptation Strategies for Global Change, 21 (2). pp. 209-224.

Cole, Andrew J., Neveux, Nicolas, Whelan, Anna, Morton, Jeff, Vis, Mark, de Nys, Rocky, and Paul, Nicholas A. (2016) Adding value to the treatment of municipal wastewater through the intensive production of freshwater macroalgae. Algal Research, 20. pp. 100-109.

Yates, Peter M., Tobin, Andrew J., Heupel, Michelle R., and Simpfendorfer, Colin A. (2016) Benefits of marine protected areas for tropical coastal sharks. Aquatic Conservation: marine and freshwater ecosystems , 26 (6). pp. 1063-1080.

Sheaves, Janine, Dingle, Liliana, and Mattone, Carlo (2016) Biotic hotspots in mangrove-dominated estuaries: macro-invertebrate aggregation in unvegetated lower intertidal flats. Marine Ecology Progress Series, 556. pp. 31-43.

Belpaire, Claude, Pujolar, José Martin, Geeraerts, Caroline, and Maes, Gregory E. (2016) Contaminants in eels and their role in the collapse of the eel stocks. In: Arai, Takaomi, (ed.) Biology and Ecology of Anguillid Eels. CRC Press, Boca Raton, FL, USA, pp. 225-250.

He, Yaya, Liang, Xiao, Jazrawi, Christopher, Montoya, Alejandro, Yuen, Alexander, Cole, Andrew J., Neveux, Nicolas, Paul, Nicholas A., de Nys, Rocky, Maschmeyer, Thomas, and Haynes, Brian S. (2016) Continuous hydrothermal liquefaction of macroalgae in the presence of organic co-solvents. Algal Research, 17. pp. 185-195.

Angly, Florent E., Pantos, Olga, Morgan, Thomas C., Rich, Virginia, Tonin, Hemerson, Bourne, David G., Mercurio, Philip, Negri, Andrew P., and Tyson, Gene W. (2016) Diuron tolerance and potential degradation by pelagic microbiomes in the Great Barrier Reef lagoon. PeerJ, 4. pp. 1-23.

Hill, Nicholas J., Tobin, Andrew J., Reside, April E., Pepperell, Julian G., and Bridge, Tom C.L. (2016) Dynamic habitat suitability modelling reveals rapid poleward distribution shift in a mobile apex predator. Global Change Biology, 22 (3). pp. 1086-1096.

Munday, Philip L., Watson, Sue-Ann, Parsons, Darren M., King, Alicia, Barr, Neill G., McLeod, Ian M., Allan, Bridie J.M., and Pether, Steve M.J. (2016) Effects of elevated CO2 on early life history development of the yellowtail kingfish, Seriola lalandi, a large pelagic fish. ICES Journal of Marine Science, 73 (3). pp. 641-649.

Sheaves, Marcus, Coles, Robert, Dale, Pat, Grech, Alana, Pressey, Robert L., and Waltham, Nathan J. (2016) Enhancing the value and validity of EIA: serious science to protect Australia's Great Barrier Reef. Conservation Letters, 9 (5). pp. 377-383.

Sheaves, Marcus, Coles, Rob, Dale, Pat, Grech, Alana, Pressey, Robert L., and Waltham, Nathan J. (2016) Enhancing the value and validity of EIA: serious science to protect Australia’s Great Barrier Reef. Conservation Letters, 9 (5). pp. 377-383.

Pujolar, José Martin, and Maes, Gregory E. (2016) Evolutionary genomics of North Atlantic eels: current status and perspectives. In: Arai, Takaomi, (ed.) Biology and Ecology of Anguillid Eels. CRC Press, Boca Raton, FL, USA, pp. 36-51.

Chan, Neil C.S., Wangpraseurt, Daniel, Kuhl, Michael, and Connolly, Sean R. (2016) Flow and coral morphology control coral surface pH: implications for the effects of ocean acidification. Frontiers in Marine Science, 26. pp. 637-641.

Heinrich, Dennis D.U., Watson, Sue-Ann, Rummer, Jodie L., Brandl, Simon J., Simpfendorfer, Colin A., Heupel, Michelle R., and Munday, Philip L. (2016) Foraging behaviour of the epaulette shark Hemiscyllium ocellatum is not affected by elevated CO2. ICES Journal of Marine Science, 73 (3). pp. 633-640.

Loughnan, Shannon R., Smith-Keune, Carolyn, Jerry, Dean R., Beheregaray, Luciano B., and Robinson, Nicholas A. (2016) Genetic diversity and relatedness estimates for captive barramundi (Lates calcarifer, Bloch) broodstock informs efforts to form a base population for selective breeding. Aquaculture Research, 47 (11). pp. 3570-3584.

Gardiner, N.M., and Jones, G.P. (2016) Habitat specialisation, site fidelity and sociality predict homing success in coral reef cardinalfish. Marine Ecology Progress Series, 558. pp. 81-96.

Tremblay, Pascal, Gori, Andrea, Maguer, Jean François, Hoogenboom, Mia, and Ferrier-Pagès, Christine (2016) Heterotrophy promotes the re-establishment of photosynthate translocation in a symbiotic coral after heat stress. Scientific Reports, 6. pp. 1-14.

Razaghi, Ali, Karthikeyan , O. P., Hao, H.T. Nguyen, and Heimann, Kirsten (2016) Hydrolysis treatments of fruit and vegetable waste for production of biofuel precursors. Bioresource Technology, 217. pp. 100-103.

Wada, Naohisa, Pollock, Frederic J., Willis, Bette L., Ainsworth, Tracy, Mano, Nobuhiro, and Bourne, David G. (2016) In situ visualization of bacterial populations in coral tissues: pitfalls and solutions. PeerJ, 4.

Bourne, David G., Morrow, Kathleen M., and Webster, Nicole S. (2016) Insights into the coral microbiome: underpinning the health and resilience of reef ecosystems. Annual Review of Microbiology, 70. pp. 317-340.

Frisch, Ashley J., Cameron, Darren S., Pratchett, Morgan S., Williamson, David H., Williams, Ashley J., Reynolds, Adam D., Hoey, Andrew S., Rizzari, Justin R., Evans, Louisa, Kerrigan, Brigid, Muldoon, Geoffrey, Welch, David, and Hobbs, Jean-Paul A. (2016) Key aspects of the biology, fisheries and management of Coral grouper. Reviews in Fish Biology and Fisheries, 26 (3). pp. 303-325.

Sambrook, Katie, Jones, Geoffrey P., and Bonin, Mary C. (2016) Life on the edge: coral reef fishes exhibit strong responses to a habitat boundary. Marine Ecology Progress Series, 561. pp. 203-215.

Angly, Florent E., Heath, Candice, Morgan, Thomas C., Tonin, Hemerson, Rich, Virginia, Schaffelke, Britta, Bourne, David G., and Tyson, Gene W. (2016) Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events. PeerJ, 4. pp. 1-24.

Sih, Tiffany L., and Kingsford, Michael J. (2016) Near-reef elemental signals in the otoliths of settling Pomacentrus amboinensis (Pomacentridae). Coral Reefs, 35 (1). pp. 303-315.

Delghandi, Madjid, Afzal, Hasifa, Al Hinai, Manal Saif Nasser, Al-Breiki, Rafaida Dhuhai Gharib, Jerry, Dean R., and Dao, Hoc Tan (2016) Novel polymorphic microsatellite markers for Panulirus ornatus and their cross-species primer amplification in Panulirus homarus. Animal Biotechnology, 27 (4). pp. 310-314.

Li, Yan, Mangott, Arnold, Kent, Megan, and Pirozzi, Igor (2016) Nutrient efficacy of microalgae as aquafeed additives for the adult black tiger prawn, Penaeus monodon. Aquaculture Research, 47 (11). pp. 3625-3635.

Malerba, Martino, Heimann, Kirsten, and Connolly, Sean R. (2016) Nutrient utilization traits vary systematically with intraspecific cell size plasticity. Functional Ecology, 30 (11). pp. 1745-1755.

Coppock, Amy G., Gardiner, Naomi M., and Jones, Geoffrey P. (2016) Olfactory responses of coral-reef fishes to coral degradation and crown-of-thorns (Acanthaster planci). Marine and Freshwater Research, 67 (5). pp. 605-611.

Capper, Angela, Erickson, Amy A., Ritson-Williams, Raphael, Becerro, Mikel A., Arthur, Karen A., and Paul, Valerie J. (2016) Palatability and chemical defences of benthic cyanobacteria to a suite of herbivores. Journal of Experimental Marine Biology and Ecology, 474. pp. 100-108.

Collins, Geoffrey Mark, Clark, Timothy Darren, and Carton, Alexander Guy (2016) Physiological plasticity v. inter-population variability: understanding drivers of hypoxia tolerance in a tropical estuarine fish. Marine and Freshwater Research, 67 (10). pp. 1575-1582.

Kingsford, Micheal, Pitt, Kylie, Llewellyn, Lyndon, O'Callaghan, Mark, Seymour, Jamie, and Richardson, Anthony (2016) Project 3.6: Establishing a research framework for future NESP investment into better understanding of the presence of box-jellyfishes (Irukandji) and risks in the Great Barrier Reef. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Carl, Christina, Lawton, Rebecca J., Paul, Nicholas A., and de Nys, Rocky (2016) Reproductive output and productivity of filamentous tropical Ulva over time. Journal of Applied Phycology, 28 (1). pp. 429-438.

Cole, Andrew J., Roberts, David A., Garside, Alan L., de Nys, Rocky, and Paul, Nicholas A. (2016) Seaweed compost for agricultural crop production. Journal of Applied Phycology, 28 (1). pp. 629-642.

Berry, Kathryn L.E., Hoogenboom, Mia O., Flores, Florita, and Negri, Andrew P. (2016) Simulated coal spill causes mortality and growth inhibition in tropical marine organisms. Scientific Reports, 6. pp. 1-8.

Simpson, Stephen D., Radford, Andrew N., Holles, Sophie , Ferrari, Maud C.O., Chivers, Douglas P., McCormick, Mark I., and Meekan, Mark G. (2016) Small-boat noise impacts natural settlement behavior of coral reef fish larvae. In: Popper, Arthur N. , and Hawkins, Anthony, (eds.) The Effects of Noise on Aquatic Life II. Advances in Experimental Medicine and Biology, 875 . Springer, New York, NY, USA, pp. 1041-1048.

Buelow, Christina A., Baker, Ronald, Reside, April E., and Sheaves, Marcus (2016) Spatial dynamics of coastal forest bird assemblages: the influence of landscape context, forest type, and structural connectivity. Landscape Ecology, 32 (3). pp. 547-561.

Barnett, Adam, Abrantes, Kátya G., Baker, Ronald, Diedrich, Amy S., Farr, Marina, Kuilboer, Alf, Mahony, Tracey, McLeod, Ian, Moscardo, Gianna, Prideaux, Murray, Stoeckl, Natalie, van Luyn, Ariella, and Sheaves, Marcus (2016) Sportfisheries, conservation and sustainable livelihoods: a multidisciplinary guide to developing best practice. Fish and Fisheries, 17 (3). pp. 696-713.

Malerba, Martino E., Connolly, Sean R., and Heimann, Kirsten (2016) Standard flow cytometry as a rapid and non-destructive proxy for cell nitrogen quota. Journal of Applied Phycology, 28 (2). pp. 1085-1095.

Rocker, Melissa M., and Brandl, Simon J. (2016) Transplantation of corals into a new environment results in substantial skeletal loss in Acropora tenuis. Marine Biodiversity, 45 (2). pp. 321-326.

Turner, Rachel A., Addison, Jane, Arias, Adrian, Bergseth, Brock J., Marshall, Nadine A., Morrison, Tiffany H., and Tobin, Renae C. (2016) Trust, confidence, and equity affect the legitimacy of natural resource governance. Ecology and Society, 21 (3).

Phillips, Julie A., Lawton, Rebecca J., de Nys, Rocky, Paul, Nicholas A., and Carl, Christina (2016) Ulva sapora sp. nov., an abundant tubular species of Ulva (Ulvales) from the tropical Pacific Ocean. Phycologia, 55 (1). pp. 55-64.

Nayfa, Maria G., and Zenger, Kyall R. (2016) Unravelling the effects of gene flow and selection in highly connected populations of the silver-lip pearl oyster (Pinctada maxima). Marine Genomics, 28. pp. 99-106.

Joyce, Melissa K., and Pirozzi, Igor (2016) Using stable isotope analysis to determine the contribution of naturally occurring pond biota and supplementary feed to the diet of farmed Australian freshwater crayfish, redclaw (Cherax quadricarinatus). International Aquatic Research , 8 (3). pp. 1-13.

Roeger, Jessica, Foale, Simon, and Sheaves, Marcus (2016) When 'fishing down the food chain' results in improved food security: evidence from a small pelagic fishery in Solomon Islands. Fisheries Research, 174. pp. 250-259.

Arrigoni, Roberto, Benzoni, Francesca, Huang, Danwei, Fukami, Hironobu, Chen, Chaolun Allen, Berumen, Michael L., Hoogenboom, Mia, Thompson, Damian, Hoeksema, Bert W., Budd, Ann F., Zayasu, Yuna, Terraneo, Tullia I., Kitano, Yuki F., and Baird, Andrew H. (2016) When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus. Contributions to Zoology, 85 (4). pp. 387-422.

Beaumont, Linda, Graham, Erin, Duursma, Daisy Englert, Wilson, Peter D., Cabrelli, Abigail, Baumgartner, John B., Hallgren, Willow, Esperon-Rodriguez, Manuel, Nipperess, David A., Warren, Dan L., Laffan, Shawn W., and VanDerWal, Jeremy (2016) Which species distribution models are more (or less) likely to project broad-scale, climate-induced shifts in species ranges? Ecological Modelling, 342. pp. 135-146.

Baird, Mark E., Adams, Matthew P., Babcock, Russell C., Oubelkheir, Kadija, Mongin, Mathieu, Wild-Allen, Karen A., Skerratt, Jennifer, Robson, Barbara J., Petrou, Katherina, Ralph, Peter J., O’Brien, Katherine R., Carter, Alex B., Jarvis, Jessie C., and Rasheed, Michael A. (2016) A biophysical representation of seagrass growth for application in a complex shallow-water biogeochemical model. Ecological Modelling, 325. pp. 13-27.

Woodland, Walmiria, Motti, Cherie A., Irving, Paul, Van Herwerden, Lynne, and Vamvounis, George (2016) A colorimetric approach towards polycyclic aromatic hydrocarbon sensing. Australian Journal of Chemistry, 69 (11). pp. 1292-1295.

Malta, Eric-jan, and de Nys, Rocky (2016) The effect of short-term preharvest strategies on the carbon constituents of Ulva ohnoi M. Hiraoka et S. Shimada. Journal of Applied Phycology, 28 (1). pp. 555-565.

Roberts, David A., and de Nys, Rocky (2016) The effects of feedstock pre-treatment and pyrolysis temperature on the production of biochar from the green seaweed Ulva. Journal of Environmental Management, 169. pp. 253-260.

Huveneers, Charlie, Simpfendorfer, Colin A., Kim, Susan, Semmens, Jayson M., Hobday, Alistair J., Pederson, Hugh, Stieglitz, Thomas, Vallee, Richard, Webber, Dale, Heupel, Michelle R., Peddemors, Vic, and Harcourt, Robert G. (2016) The influence of environmental parameters on the performance and detection range of acoustic receivers. Methods in Ecology and Evolution, 7 (7). pp. 825-835.

Mohamed, A.R., Cumbo, V., Harii, S., Shinzato, C., Chan, C.X., Ragan, M.A., Bourne, D.G., Willis, B.L., Ball, E.E., Satoh, N., and Miller, D.J. (2016) The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome. Molecular Ecology, 25 (13). pp. 3127-3141.

Neveux, N., Magnusson, M., Mata, L., Whelan, A., de Nys, R., and Paul, N.A. (2016) The treatment of municipal wastewater by the macroalga Oedogonium sp and its potential for the production of biocrude. Algal Research, 13. pp. 284-292.

Carl, Christina, Magnusson, Marie, Paul, Nicholas A., and de Nys, Rocky (2016) The yield and quality of multiple harvests of filamentous Ulva tepida. Journal of Applied Phycology, 28 (5). pp. 2865-2873.

Lewis, Stephen E., Wüst, Raphael A.J., Webster, Jody, M., Collins, John, Wright, Shelley, A., and Jacobsen, Geraldine (2015) Rapid relative sea-level fall along north-eastern Australia between 1200 and 800 cal. yr BP: an appraisal of the oyster evidence. Marine Geology, 370. pp. 20-30.

Delghandi, M., Goddard, S., Jerry, D.R., Dao, H.T., Afzal, H., and Al-Jardani, S.S. (2015) Isolation, characterization, and multiplexing of novel microsatellite markers for the tropical scalloped spiny lobster (Panulirus homarus). Genetics and Molecular Research, 14 (4). pp. 19066-19070.

Cole, Andrew J., De Nys, Rocky, and Paul, Nicholas A. (2015) Biorecovery of nutrient waste as protein in freshwater macroalgae. Algal Research, 7 (2015). pp. 58-65.

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Thépot, Valentin, and Jerry, Dean R. (2015) The effect of temperature on the embryonic development of barramundi, the Australian strain of Lates calcarifer (Bloch) using current hatchery practices. Aquaculture Reports, 2. pp. 132-138.

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Nguyen Hao, Hoang-Tuong, Karthikeyan, Obulisamy Parthiba, and Heimann, Kirsten (2015) Bio-refining of carbohydrate-rich food waste for biofuels. Energies, 8 (7). pp. 6350-6364.

Carter, Alex B., Carton, Alexander G., McCormick, Mark I., Tobin, Andrew J., and Williams, Ashley J. (2015) Maternal size, not age, influences egg quality of a wild, protogynous coral reef fish Plectropomus leopardus. Marine Ecology Progress Series, 529. pp. 249-263.

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Kumar, Senthil Arun, Magnusson, Marie, Ward, Leigh C., Paul, Nicholas A., and Brown, Lindsay (2015) A green algae mixture of Scenedesmus and Schroederiella attenuates obesity-linked metabolic syndrome in rats. Nutrients, 7 (4). pp. 2771-2787.

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Magnusson, Marie, Mata, Leonardo, Wang, Na, Zhao, Jian, de Nys, Rocky, and Paul, Nicholas A. (2015) Manipulating antioxidant content in macroalgae in intensive land-based cultivation systems for functional food applications. Algal Research, 8. pp. 153-160.

Cipresso Pereira, Pedro Henrique, Barros, Breno, Zemoi, Rahel, and Ferreira, Beatrice Padovani (2015) Ontogenetic diet changes and food partitioning of Haemulon spp. coral reef fishes, with a review of the genus diet. Reviews in Fish Biology and Fisheries, 25 (1). pp. 245-260.

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Kumar, Senthil Arun, Magnusson, Marie, Ward, Leigh C., Paul, Nicholas A., and Brown, Lindsay (2015) Seaweed supplements normalise metabolic, cardiovascular and liver responses in high-carbohydrate, high-fat fed rats. Marine Drugs, 13 (2). pp. 788-805.

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Kishore, Pranesh, and Southgate, Paul C. (2015) Haemocyte persistence after grafting for pearl production in Pinctada margaritifera (Linnaeus, 1758). Fish and Shellfish Immunology, 42 (2). pp. 530-532.

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Espinoza, Mario, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2015) Residency patterns and movements of grey reef sharks (Carcharhinus amblyrhynchos) in semi-isolated coral reef habitats. Marine Biology, 162 (2). pp. 343-358.

Gosch, Björn J., Paul, Nicholas A., de Nys, Rocky, and Magnusson, Marie (2015) Seasonal and within-plant variation in fatty acid content and composition in the brown seaweed Spatoglossum macrodontum (Dictyotales, Phaeophyceae). Journal of Applied Phycology, 27 (1). pp. 387-398.

Gainsford, A., Van Herwerden, L., and Jones, G.P. (2015) Hierarchical behaviour, habitat use and species size differences shape evolutionary outcomes of hybridization in a coral reef fish. Journal of Evolutionary Biology, 28 (1). pp. 205-222.

Abrantes, Kátya G., Johnston, Ross, Connolly, Rod M., and Sheaves, Marcus (2015) Importance of mangrove carbon for aquatic food webs in wet–dry tropical estuaries. Estuaries and Coasts, 38 (1). pp. 383-399.

Buelow, Christina, and Sheaves, Marcus (2015) A birds-eye view of biological connectivity in mangrove systems. Estuarine, Coastal and Shelf Science, 152. pp. 33-43.

Atherton, Jennifer Ann, and McCormick, Mark Ian (2015) Active in the sac: damselfish embryos use innate recognition of odours to learn predation risk before hatching. Animal Behaviour, 103. pp. 1-6.

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Drew, M., White, W.T., Dharmadi, , Harry, A.V., and Huveneers, C. (2015) Age, growth and maturity of the pelagic thresher Alopias pelagicusand the scalloped hammerhead Sphyrna lewini. Journal of Fish Biology, 86 (1). pp. 333-354.

Masese, Frank O., Abrantes, Kátya G., Gettel, Gretchen M., Bouillon, Steven, Irvine, Kenneth, and McClain, Michael E. (2015) Are large herbivores vectors of terrestrial subsidies for riverine food webs? Ecosystems, 18 (4). pp. 686-706.

Hein, Margaux Y., Lamb, Joleah B., Scott, Chad, and Willis, Bette L. (2015) Assessing baseline levels of coral health in a newly established marine protected area in a global scuba diving hotspot. Marine Environmental Research, 103. pp. 56-65.

Currey, Leanne M., Heupel, Michelle R., Simpfendorfer, Colin A., and Williams, Ashley J. (2015) Assessing environmental correlates of fish movement on a coral reef. Coral Reefs, 34 (4). pp. 1267-1277.

Loffler, Z., Bellwood, D.R., and Hoey, A.S. (2015) Associations among coral reef macroalgae influence feeding by herbivorous fishes. Coral Reefs, 34 (1). pp. 51-55.

Poulos, Davina E., and McCormick, Mark I. (2015) Asymmetries in body condition and order of arrival influence competitive ability and survival in a coral reef fish. Oecologia, 179 (3). pp. 719-728.

Karthikeyan, Obulisamy P., Rajasekar, Aruliah, and Balasubramanian, Rajasekhar (2015) Bio-oxidation and bio-cyanidation of refractory mineral ores for gold extraction: a review. Critical Reviews in Environmental Science and Technology, 45. pp. 1611-1643.

Roberts, David A., Paul, Nicholas A., Dworjanyn, Symon A., Bird, Michael I., and de Nys, Rocky (2015) Biochar from commercially cultivated seaweed for soil amelioration. Scientific Reports, 5. pp. 1-6.

Chidambarampadmavathy, Karthigeyan, Obulisamy, Kartik P., and Heimann, Kirsten (2015) Biopolymers made from methane in bioreactors. Engineering in Life Sciences, 15 (7). pp. 689-699.

Chin, Andrew, Mourier, Johann, and Rummer, Jodie L. (2015) Blacktip reef sharks (Carcharhinus melanopterus) show high capacity for wound healing and recovery following injury. Conservation Physiology, 3 (1). pp. 1-9.

Coker, D.J., Nowicki, J.P., and Pratchett, M.S. (2015) Body condition of the coral-dwelling fish Dascyllus aruanus (Linnaeus 1758) following host colony bleaching. Environmental Biology of Fishes, 98 (2). pp. 691-695.

Heimann, Kirsten, and Sparrow, Leanne (2015) Ciguatera: Tropical Reef Fish Poisoning. In: Kim, Se-Kwon, (ed.) Handbook of Marine Microalgae: Biotechnolgy Advances. Academic Press, London, UK, pp. 547-558.

Welbergen, Justin, Meade, Jessica, Storlie, Collin, Vanderwal, Jeremy, Dalziell, Anastasia, Hodgson, Lauren, Krockenberger, Andrew, and Williams, Stephen (2015) Climate change and the impacts of extreme events on Australia's Wet Tropics biodiversity. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Welsh, J.Q., Bonaldo, R.M., and Bellwood, D.R. (2015) Clustered parrotfish feeding scars trigger partial coral mortality of massive Porites colonies on the inshore Great Barrier Reef. Coral Reefs, 34 (1). pp. 81-86.

Zhu, Youjian, Piotrowska, Patrycja, Van Eyk, Philip J., Bostrom, Dan, Kwong, Chi Wai, Wang, Dingbiao, Cole, Andrew, de Nys, Rocky, Gentili, Francesco G., and Ashman, Peter J. (2015) Cogasification of Australian brown coal with algae in a fluidized bed reactor. Energy & Fuels, 29 (3). pp. 1686-1700.

Islam , Muhammad Aminul, Rahman, M.M., Heimann, Kirsten, Nabi, Md Nurun, Ristovski, Zoran, Dowell, Ashley, Feng, Bo, von Alvensleben, Nicolas, and Brown, Richard J. (2015) Combustion analysis of microalgae methyl ester in a common rail direct injection diesel engine. Fuel , 143. pp. 351-360.

Neveux, Nicolas, Magnusson, Marie, Maschmeyer, Thomas, de Nys, Rocky, and Paul, Nicholas A. (2015) Comparing the potential production and value of high-energy liquid fuels and protein from marine and freshwater macroalgae. GCB Bioenergy, 7 (4). pp. 673-689.

Cipresso Pereira, Pedro H., Munday, Philip L., and Jones, Geoffrey P. (2015) Competitive mechanisms change with ontogeny in coral-dwelling gobies. Ecology, 96 (11). pp. 3090-3101.

Espinoza, Mario, Lédée, Elodie J.I., Simpfendorfer, Colin A., Tobin, Andrew J., and Heupel, Michelle R. (2015) Contrasting movements and connectivity of reef-associated sharks using acoustic telemetry: implications for management. Ecological Applications, 25 (8). pp. 2101-2118.

Casey, J.M., Choat, J.H., and Connolly, S.R. (2015) Coupled dynamics of territorial damselfishes and juvenile corals on the reef crest. Coral Reefs, 34. pp. 1-11.

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Russ, Garry R., Bergseth, Brock J., Rizzari, Justin R., and Alcala, Angel C. (2015) Decadal-scale effects of benthic habitat and marine reserve protection on Philippine goatfish (F: Mullidae). Coral Reefs, 34 (3). pp. 773-787.

McKenna, Skye, Jarvis, Jessie, Sankey, Tonia, Reason, Carissa, Coles, Robert, and Rasheed, Michael (2015) Declines of seagrasses in a tropical harbour, North Queensland, Australia, are not the result of a single event. Journal of Biosciences, 40 (2). pp. 389-398.

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Robson, Heather, Basiita, Rose, Noble, Tansyn, Burrows, Damien, and Jerry, Dean (2015) Environmental DNA (eDNA) survey of Tilapia on the mid coast (Geraldton region) of Western Australia. Report. James Cook University, Townsville, QLD, Australia.

Jerry, Dean, Noble, Tansyn, Robson, Heather, and Burrows, Damien (2015) Environmental DNA (eDNA) survey of the Tilapia in the Cudgeon Region, NSW. Report. James Cook University, Cairns, QLD, Australia.

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Vermeiren, Peter, and Sheaves, Marcus (2015) Modeling intertidal crab distribution patterns using photographic mapping among tropical Australian estuaries. Estuaries and Coasts, 38 (5). pp. 1545-1556.

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Heimann, Kirsten, and Cirés, Samuel (2015) N2-fixing cyanobacteria: ecology and biotechnological applications. In: Kim, Se-Kwon, (ed.) Handbook of Marine Microalgae: Biotechnolgy Advances. Academic Press, London, UK, pp. 501-515.

Munroe, Samantha E.M., Simpfendorfer, Colin A., Moloney, James, and Heupel, Michelle R. (2015) Nearshore movement ecology of a medium-bodied shark, the creek whaler Carcharhinus fitzroyensis. Animal Biotelemetry, 3 (10). pp. 1-12.

Morse, Peter, Zenger, Kyall R., McCormick, Mark I., Meekan, Mark G., and Huffard, Christine L. (2015) Nocturnal mating behaviour and dynamic male investment of copulatory time in the Southern Blue-Ringed Octopus, Hapalochlaena maculosa (Cephalopoda: Octopodidae). Behaviour, 152. pp. 1883-1910.

Dao, Hoc Tan, Smith-Keune, Carolyn, Wolanski, Eric, Jones, Clive M., and Jerry, Dean R. (2015) Oceanographic currents and local ecological knowledge indicate, and genetics does not refute, a contemporary pattern of larval dispersal for the ornate spiny lobster, Panulirus ornatus in the south-east Asian archipelago. PLoS ONE, 10 (5). pp. 1-19.

Leahy, Susannah M., Russ, Garry R., and Abesamis, Rene A. (2015) Pelagic larval duration and settlement size of a reef fish are spatially consistent, but post-settlement growth varies at the reef scale. Coral Reefs, 34 (4). pp. 1283-1296.

van der Meer, M.H., Berumen, M.L., Hobbs, J.-P.A., and van Herwerden, L. (2015) Population connectivity and the effectiveness of marine protected areas to protect vulnerable, exploited and endemic coral reef fishes at an endemic hotspot. Coral Reefs, 34 (2). pp. 393-402.

Templeman, Michelle A., and Kingsford, Michael J. (2015) Predicting aqueous copper and zinc accumulation in the upside-down jellyfish Cassiopea maremetens through the use of biokinetic models. Environmental Monitoring and Assessment, 187 (416). pp. 1-8.

Zhu, Youjian, Kwong, Chi Wai, Van Eyk, Philip J., de Nys, Rocky, Wang, Dingbiao, and Ashman, Peter J. (2015) Pyrolysis characteristics and char reactivity of Oedogonium sp. and Loy Yang coal. Energy & Fuels, 29 (8). pp. 5047-5055.

Capper, Roxana L., Jin, Young K., Lundgren, Petra B., Peplow, Lesa M., Matz, Mikhail V., and van Oppen, Madeleine J.H. (2015) Quantitative high resolution melting: two methods to determine SNP allele frequencies from pooled samples. BMC Genetics, 16. pp. 1-13.

Carlson, John K., and Simpfendorfer, Colin A. (2015) Recovery potential of smalltooth sawfish, Pristis pectinata, in the United States determined using population viability models. Aquatic Conservation: marine and freshwater ecosystems , 25 (2). pp. 187-200.

Andrews, Allen H., Choat, John H., Hamilton, Richard J., and DeMartini, Edward E. (2015) Refined bomb radiocarbon dating of two iconic fishes of the Great Barrier Reef. Marine and Freshwater Research, 66 (4). pp. 305-316.

Kramer, Michael J., Bellwood, Orpha, Fulton, Christopher J., and Bellwood, David R. (2015) Refining the invertivore: diversity and specialisation in fish predation on coral reef crustaceans. Marine Biology, 162 (9). pp. 1779-1786.

Munroe, S.E.M., Heupel, M.R., Fisk, A.T., Logan, M., and Simpfendorfer, C.A. (2015) Regional movement patterns of a small-bodied shark revealed by stable-isotope analysis. Journal of Fish Biology, 86 (5). pp. 1567-1586.

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Moorhead, Jonathan A. (2015) Research-scale tank designs for the larval culture of marine ornamental species, with emphasis on fish. Aquacultural Engineering, 64. pp. 32-41.

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Chidambarampadmavathy, Karthigeyan, Kartikeyan, Obulisamy P., and Heimann, Kirsten (2015) Role of copper and iron in methane oxidation and bacterial biopolymer accumulation. Engineering in Life Sciences, 15. pp. 387-399.

Welsh, Justin Q., and Bellwood, David R. (2015) Simulated macro-algal outbreak triggers a large-scale response on coral reefs. PLoS One, 10 (7). pp. 1-16.

Eriksen, Marit Skog, Poppe, Trygve T., McCormick, Mark, Damsgard, Børge, Salte, Ragnar, Braastad, Bjarne O., and Bakken, Morten (2015) Simulated maternal pre-spawning stress affects offspring's attributes in farmed Atlantic salmon Salmo salar (Linnaeus, 1758). Aquaculture Research, 46 (6). pp. 1480-1489.

Jones, Clive, Huong, Le Lan, Tuan, Le Anh, Bahrawi, Samsul, and Irvin, Simon (2015) Spiny lobster aquaculture development in eastern Indonesia, Vietnam and Australia. Report. Australian Centre for International Agricultural Research (ACIAR), Canberra, ACT, Australia.

McCook, L., Schaffelke, B., Apte, S., Brinkman, R., Brodie, J., Erftemeijer, P., Eyre, B., Hoogerwerf, F., Irvine, I., Jones, R., King, B., Marsh, H., Masini, R., Morton, R., Pitcher, R., Rasheed, M., Sheaves, M., Symonds, A., and Warne, M.St.J. (2015) Synthesis of current knowledge of the biophysical impacts of dredging and disposal on the Great Barrier Reef: report of an Independent Panel of Experts. Report. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia.

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Trujillo González, Alejandro, Constantinoiu, Constantin C., Rowe, Richard, and Hutson, Kate S. (2015) Tracking transparent monogenean parasites on fish from infection to maturity. International Journal for Parasitology: Parasites and Wildlife, 4 (3). pp. 316-322.

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van de Water, A.J.M., Ainsworth, Tracy D., Leggat, William, Bourne, David G., Willis, Bette L., and Van Oppen, Madeleine J.H. (2015) The coral immune response facilitates protection against microbes during tissue regeneration. Molecular Ecology, 24 (13). pp. 3390-3404.

Lawton, Rebecca J., de Nys, Rocky, Magnusson, Marie E., and Paul, Nicholas A. (2015) The effect of salinity on the biomass productivity, protein and lipid composition of a freshwater macroalga. Algal Research, 12. pp. 213-220.

Ferrari, Maud C.O., McCormick, Mark I., Allan, Bridie J.M., Choi, Rebecca, Ramasamy, Ryan A., and Chivers, Douglas P. (2015) The effects of background risk on behavioural lateralization in a coral reef fish. Functional Ecology, 29 (12). pp. 1553-1559.

Bellwood, David R., Goatley, Christopher H.R., Cowman, Peter F., and Bellwood, Orpha (2015) The evolution of fishes on coral reefs: fossils, phylogenies and functions. In: Mora, Camilo, (ed.) Ecology of Fishes on Coral Reefs. Cambridge University Press, Cambridge, UK, pp. 55-63.

Silva Leal, Isabela Carolina, de Araújo, Maria Elisabeth, da Cunha, Simone Rabelo, and Cipresso Pereira, Pedro Henrique (2015) The influence of fire-coral colony size and agonistic behaviour of territorial damselfish on associated coral reef fish communities. Marine Environmental Research, 108. pp. 45-54.

Russ, Garry R., Questel, Sarah-Lee A., Rizzari, Justin R., and Alcala, Angel C. (2015) The parrotfish-coral relationship: refuting the ubiquity of a prevailing paradigm. Marine Biology, 162 (10). pp. 2029-2045.

Machado, Lorenna, Kinley, Robert D., Magnusson, Marie, de Nys, Rocky, and Tomkins, Nigel W. (2015) The potential of macroalgae for beef production systems in Northern Australia. Journal of Applied Phycology, 27 (5). pp. 2001-2005.

Bonin, Mary C., Böstrom-Einarsson, Lisa, Munday, Philip L., and Jones, Geoffrey P. (2015) The prevalence and importance of competition among coral reef fishes. Annual Review of Ecology, Evolution, and Systematics, 46. pp. 169-190.

Nagelkerken, Ivan, Sheaves, Marcus, Baker, Ronald, and Connolly, Rod M. (2015) The seascape nursery: a novel spatial approach to identify and manage nurseries for coastal marine fauna. Fish and Fisheries, 16 (2). pp. 362-371.

Trieu, Nancy, Cutmore, Scott C., Miller, Terrence L., and Cribb, Thomas H. (2015) A species pair of Bivesicula Yamaguti, 1934 (Trematoda: Bivesiculidae) in unrelated Great Barrier Reef fishes: implications for the basis of speciation in coral reef fish trematodes. Systematic Parasitology, 91 (3). pp. 231-239.

Noble, Tansyn, Robson, Heather, Saunders, Richard, and Jerry, Dean (2015) The utility of eDNA as a tilapia surveillance tool. Report. Invasive Animalc Cooperative Research Centre, Canberra, ACT, Australia.

Williamson, David H., Ceccarelli, Daniela M., Evans, Richard D., Hill, Jos K., and Russ, Garry R. (2014) Derelict fishing line provides a useful proxy for estimating levels of non-compliance with no-take marine reserves. PLoS One, 9 (12). pp. 1-21.

Hughes, Terry P., Bellwood, David R., Connolly, Sean R., Cornell, Howard V., and Karlson, Ronald H. (2014) Double jeopardy and global extinction risk in corals and reef fishes. Current Biology, 24 (24). pp. 2946-2951.

Rivera-Posada, Jairo, Pratchett, Morgan S., Aguilar, Catalina, Grand, Alexandra, and Caballes, Ciemon F. (2014) Bile salts and the single-shot lethal injection method for killing crown-of-thorns sea stars (Acanthaster planci). Ocean & Coastal Management, 102 (A). pp. 383-390.

Taylor, Brett M., Houk, Peter, Russ, Garry R., and Choat, J. Howard (2014) Life histories predict vulnerability to overexploitation in parrotfishes. Coral Reefs, 33 (4). pp. 869-878.

Harrison, Hugo B., Feldheim, Kevin A., Jones, Geoffrey P., Mansour, Hicham, Perumal, Sadhasivam, Williamson, David H., and Berumen, Michael L. (2014) Validation of microsatellite multiplexes for parentage analysis in a coral reef fish (Lutjanus carponotatus, Lutjanidae). Conservation Genetics Resources, 6 (4). pp. 803-806.

Abdul Wahab, Muhammad Azmi, de Nys, Rocky, Abdo, David, Webster, Nicole, and Whalan, Steve (2014) The influence of habitat on post-settlement processes, larval production and recruitment in a common coral reef sponge. Journal of Experimental Marine Biology and Ecology, 461. pp. 162-172.

Rigby, Cassandra L., Wedding, Brett B., Grauf, Steve, and Simpfendorfer, Colin A. (2014) The utility of near infrared spectroscopy for age estimation of deepwater sharks. Deep-sea Research Part I: Oceanographic Research Papers, 94. pp. 184-194.

Razaghi, Ali, Kartik, Obulisamy, Owens, Leigh, and Heimann, Kirsten (2014) Methane oxidation by the oleaginous yeast, Rhodotorula glutinis – fact or fiction? In: [Presented at the North Queensland Festival of Life Sciences 2014]. From: North Queensland Festival of Life Sciences 2014, 5 November 2014, Townsville, QLD, Australia.

Cole, Andrew J., Mata, Leonardo, Paul, Nicholas A., and De Nys, Rocky (2014) Using CO₂ to enhance carbon capture and biomass applications of freshwater macroalgae. GCB Bioenergy, 6. pp. 637-645.

Sharp, Michael F., Kamath, Sandip D., Koeberl, Martina, Jerry, Dean R., O'Hehir, Robyn E., Campbell, Dianne E., and Lopata, Andreas L. (2014) Differential IgE binding to isoallergens from Asian seabass (Lates calcarifer) in children and adults. Molecular Immunology, 62 (1). pp. 77-85.

Hodge, Jennifer R., Van Herwerden, Lynne , and Bellwood, David R. (2014) Temporal evolution of coral reef fishes: global patterns and disparity in isolated locations. Journal of Biogeography, 41 (11). pp. 2115-2127.

Cutmore, Scott C., Miller, Terrence L., Bray, Rodney A., and Cribb, Thomas H. (2014) A new species of Plectognathotrema Layman, 1930 (Trematoda: Zoogonidae) from an Australian monacanthid, with a molecular assessment of the phylogenetic position of the genus. Systematic Parasitology, 89 (3). pp. 237-246.

Wenger, Amelia S., McCormick, Mark I., Endo, Geoff G.K., McLeod, Ian M., Kroom, Frederieke J., and Jones, Geoffrey P. (2014) Suspended sediment prolongs larval development in a coral reef fish. Journal of Experimental Biology, 217. pp. 1122-1128.

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Moser, Gerhard, Raadsma, Herman W., Taylor, Joseph J., and Zenger, Kyall R. (2014) Determining genetic contributions to host oyster shell growth: quantitative trait loci and genetic association analysis for the silver-lipped pearl oyster, Pinctada maxima. Aquaculture, 434. pp. 367-375.

Lavoué, Sébastien, Nakayama, Kouji, Jerry, Dean R., Yamanoue, Yusuke, Yagishita, Naoki, Suzuki, Nobuaki, Nishida, Mutsumi, and Miya, Masaki (2014) Mitogenomic phylogeny of the Percichthyidae and Centrarchiformes (Percomorphaceae): comparison with recent nuclear gene-based studies and simultaneous analysis. Gene, 549 (1). pp. 46-57.

Lema, Kimberley A., Willis, Bette L., and Bourne, David G. (2014) Amplicon pyrosequencing reveals spatial and temporal consistency in diazotroph assemblages of the Acropora millepora microbiome. Environmental Microbiology, 16 (10). pp. 3345-3359.

Kohli, Gurjeet S., Murray, Shauna A., Neilan, Brett A., Rhodes, Lesley L., Harwood, D. Tim, Smith, Kirsty F., Meyer, Lauren, Capper, Angela, Brett, Steve, and Hallegraeff, Gustaaf M. (2014) High abundance of the potentially maitotoxic dinoflagellate Gambierdiscus carpenteri in temperate waters of New South Wales, Australia. Harmful Algae, 39. pp. 134-145.

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Moser, Gerhard, Raadsma, Herman W., Taylor, Joseph J., and Zenger, Kyall R. (2014) Quantitative trait loci and genetic association analysis reveals insights into complex pearl quality traits in donor silver-lipped pearl oysters. Aquaculture, 434. pp. 476-485.

Rodolfo-Metalpa, Riccardo, Hoogenboom, Mia O., Rottier , Cécile, Ramos-Esplá, Alfonso, Baker, Andrew C., Fine, Maoz, and Ferrier-Pagès, Christine (2014) Thermally tolerant corals have limited capacity to acclimatize to future warming. Global Change Biology, 20 (10). pp. 3036-3049.

Alajmi, Fahad, and Zeng, Chaoshu (2014) The effects of stocking density on key biological parameters influencing culture productivity of the calanoid copepod, Parvocalanus crassirostris. Aquaculture, 434. pp. 201-207.

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Cirés, Samuel, Alvarez-Roa, Carlos, Wood, Susanna A., Puddick, Jonathan, Loza, Virginia, and Heimann, Kirsten (2014) First report of microcystin-producing Fischerella sp. (Stigonematales, Cyanobacteria) in tropical Australia. Toxicon, 88. pp. 62-66.

Espinoza, Mario, Cappo, Mike, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2014) Quantifying shark distribution patterns and species-habitat associations: implications of marine park zoning. PLoS ONE, 9 (9). pp. 1-17.

Wolanski, Eric, and Kingsford, Michael J. (2014) Oceanographic and behavioural assumptions in models of the fate of coral and coral reef fish larvae. Journal of the Royal Society Interface, 11 (98). pp. 1-12.

Pratchett, Morgan S., Hoey, Andrew S., Cvitanovic, Christopher, Hobbs, Jean-Paul, and Fulton, Christopher J. (2014) Abundance, diversity, and feeding behavior of coral reef butterflyfishes at Lord Howe Island. Ecology and Evolution, 4 (18). pp. 3612-3625.

Taylor, B.M., Rhodes, K.L., Marshell, A., and McIlwain, J.L. (2014) Age-based demographic and reproductive assessment of orangespine Naso lituratus and bluespine Naso unicornis unicornfishes. Journal of Fish Biology, 85 (3). pp. 901-916.

Mouillot, David, Villéger, Sébastien, Parravicini, Valeriano, Kulbicki, Michel, Ernesto Arias-González, Jesus, Bender, Mariana, Chabanet, Pascale, Floeter, Sergio R., Friedlander, Alan, Vigliola, Laurent, and Bellwood, David R. (2014) Functional over-redundancy and high functional vulnerability in global fish faunas on tropical reefs. Proceedings of the National Academy of Sciences of the United States of America, 111 (38). pp. 13757-13762.

Parravicini, Valeriano, Villéger, Sébastien, McClanahan, Tim R., Arias-González, Jesus Ernesto, Bellwood, David R., Belmaker, Jonathan, Chabanet, Pascale, Floeter, Sergio R., Friedlander, Alan M., Guilhaumon, François, Vigliola, Laurent, Kulbicki, Michel, and Mouillot, David (2014) Global mismatch between species richness and vulnerability of reef fish assemblages. Ecology Letters, 17 (9). pp. 1101-1110.

Kramer, M.J., Bellwood, D.R., and Bellwood, O. (2014) Large‐scale spatial variation in epilithic algal matrix cryptofaunal assemblages on the Great Barrier Reef. Marine Biology, 161 (9). pp. 2183-2190.

Xu, Su Yun, Karthigkeyan, Obuli P., Selvam , Ammaiyappan, and Wong, Jonathan W.C (2014) Microbial community distribution and extracellular enzyme activities in leach bed reactor treating food waste: Effect of different leachate recirculation practices. Bioresource Technology, 168. pp. 41-48.

Alajmi, Fahad, Zeng, Chaoshu, and Jerry, Dean R. (2014) Improvement in the reproductive productivity of the tropical calanoid copepod Parvocalanus crassirostris through selective breeding. Aquaculture, 420–421. pp. 18-23.

Langlois, Lucas A., and Hoogenboom, Mia O. (2014) Capacity for short-term physiological acclimation to light does not control the lower depth distributions of branching corals. Marine Ecology Progress Series, 508. pp. 149-162.

Magnusson, Marie, Mata, Leonardo, De Nys, Rocky, and Paul, Nicholas (2014) Biomass, lipid and fatty acid production in large-scale cultures of the marine macroalga Derbesia tenuissima (Chlorophyta). Marine Biotechnology, 16 (4). pp. 456-464.

Paul, Nicholas A., Neveux, Nicolas, Magnusson, Marie, and De Nys, Rocky (2014) Comparative production and nutritional value of "sea grapes" — the tropical green seaweeds Caulerpa lentillifera and C. racemosa. Journal of Applied Phycology, 26 (4). pp. 1833-1844.

Do Huu, Hoang, and Jones, Clive M. (2014) Effects of dietary mannan oligosaccharide supplementation on juvenile spiny lobster Panulirus homarus (Palinuridae). Aquaculture, 432. pp. 258-264.

Miller, Kelsey Irene, and Russ, Garry Ronald (2014) Studies of no-take marine reserves: methods for differentiating reserve and habitat effects. Ocean & Coastal Management, 96. pp. 51-60.

Pollock, F. Joseph, Lamb, Joleah B., Field, Stuart N., Heron, Scott F., Schaffelke, Britta, Shedrawi, George, Bourne, David G., and Willis, Bette L. (2014) Sediment and turbidity associated with offshore dredging increase coral disease prevalence on nearby reefs. PLoS ONE, 9 (7). pp. 1-9.

Huerlimann, Roger, Steinig, Eike J., Loxton, Heather, Zenger, Kyall R., Jerry, Dean R., and Heimann, Kirsten (2014) Effects of growth phase and nitrogen starvation on expression of fatty acid desaturases and fatty acid composition of Isochrysis aff. galbana (TISO). Gene, 545 (1). pp. 36-44.

Cole, Andrew J., de Nys, Rocky, and Paul, Nicholas A. (2014) Removing constraints on the biomass production of freshwater macroalgae by manipulating water exchange to manage nutrient flux. PLoS ONE, 9 (7). pp. 1-9.

Tobin, Andrew J., Mapleston, Amos, Harry, Alastair V., and Espinoza, Mario (2014) Big fish in shallow water; use of an intertidal surf-zone habitat by large-bodied teleosts and elasmobranchs in tropical northern Australia. Environmental Biology of Fishes, 97 (7). pp. 821-838.

Sheaves, Marcus, Brookes, Justin, Coles, Robert, Freckelton, Marnie, Groves, Paul, Johnston, Ross, and Wingberg, Pia (2014) Repair and revitalisation of Australia's tropical estuaries and coastal wetlands: opportunities and constraints for the reinstatement of lost function and productivity. Marine Policy, 47. pp. 23-38.

Kidgell, Joel T., de Nys, Rocky, Paul, Nicholas A., and Roberts, David A. (2014) The sequential application of macroalgal biosorbents for the bioremediation of a complex industrial effluent. PLoS ONE, 9 (7).

Welladsen, Heather, Kent, Megan, Mangott, Arnold, and Li, Yan (2014) Shelf-life assessment of microalgae concentrates: effect of cold preservation on microalgal nutrition profiles. Aquaculture, 430. pp. 241-247.

Huerlimann, Roger, Steinig, Eike J., Loxton, Heather, Zenger, Kyall, Jerry, Dean R., and Heimann, Kirsten (2014) The effect of nitrogen limitation on acetyl-CoA carboxylase expression and fatty acid content in Chromera velia and Isochrysis aff. galbana (TISO). Gene, 543 (2). pp. 204-211.

Carl, Christina, de Nys, Rocky, and Paul, Nicholas A. (2014) The seeding and cultivation of a tropical species of filamentous ulva for algal biomass production. PLoS ONE, 9 (6). pp. 1-9.

Lane, Daniel J., Zevenhoven, Maria, Ashman, Peter J., van Eyk, Philip J., Hupa, Mikko, de Nys, Rocky, and Lewis, David M. (2014) Algal biomass: occurrence of the main inorganic elements and simulation of ash interactions with bed material. Energy & Fuels, 28 (7). pp. 4622-4632.

Kidgell, Joel T., de Nys, Rocky, Hu, Yi, Paul, Nicholas A., and Roberts, David A. (2014) Bioremediation of a complex industrial effluent by biosorbents derived from freshwater macroalgae. PLoS ONE, 9 (6). pp. 1-9.

Connolly, Sean R., Macneil, M. Aaron, Caley, M. Julian, Knowlton, Nancy, Cripps, Ed, Hisano, Mizue, Thibaut, Loïc M., Bhattacharya, Bhaskar D., Benedetti-Cechi, Lisandro, Brainard, Russell E., Brandt, Angelika, Bulleri, Fabio, Ellingsen, Kari E., Kaiser, Stefanie, Kröncke, Ingrid, Linse, Katrin, Maggi, Elena, O'Hara, Timothy D., Plaisance, Laetititia, Poore, Gary C.B., Sarkar, Santosh K., Satpathy, Kamala, Schückel, Ulrike, Williams, Alan, and Wilson, Robin S. (2014) Commonness and rarity in the marine biosphere. Proceedings of the National Academy of Sciences of the United States of America, 111 (23). pp. 8524-8529.

Montanari, Stefano R., Hobbs, Jean-Paul A., Pratchett, Morgan S., Bay, Line K., and Van Herwerden, Lynne (2014) Does genetic distance between parental species influence outcomes of hybridization among coral reef butterflyfishes? Molecular Ecology, 23 (11). pp. 2757-2770.

Fox, Rebecca J., and Bellwood, David R. (2014) Herbivores in a small world: network theory highlights vulnerability in the function of herbivory on coral reefs. Functional Ecology, 28 (3). pp. 642-651.

Bentley, B.P., Harvey, E.S., Newman, S.J., Welch, D.J., Smith, A.K., and Kennington, W.J. (2014) Local genetic patchiness but no regional differences between Indo-West Pacific populations of the dogtooth tuna Gymnosarda unicolor. Marine Ecology Progress Series, 506. pp. 267-277.

Chong-Seng, K.M., Nash, K.L., Bellwood, D.R., and Graham, N.A.J. (2014) Macroalgal herbivory on recovering versus degrading coral reefs. Coral Reefs, 33 (2). pp. 409-419.

Brandl, S.J., Hoey, A.S., and Bellwood, D.R. (2014) Micro-topography mediates interactions between corals, algae, and herbivorous fishes on coral reefs. Coral Reefs, 33 (2). pp. 421-430.

Abdul Wahab, M., De Nys, R., Webster, N., and Whalan, S. (2014) Phenology of sexual reproduction in the common coral reef sponge, Carteriospongia foliascens. Coral Reefs, 33 (2). pp. 381-394.

Trave, Claudia, and Sheaves, Marcus (2014) Bimini Islands: a characterization of the two major nursery areas; status and perspectives. SpringerPlus, 3. pp. 1-9.

Ellison, Michael B., de Nys, Rocky, Paul, Nicholas A., and Roberts, David A. (2014) Growth and metal bioconcentration by conspecific freshwater macroalgae cultured in industrial waste water. PeerJ, 2. pp. 1-17.

Abdul Wahab, Muhammad Azmi, de Nys, Rocky, Webster, Nicole, and Whalan, Steve (2014) Larval behaviours and their contribution to the distribution of the intertidal coral reef sponge Carteriospongia foliascens. PLoS ONE, 9 (5). pp. 1-13.

Carl, Christina, de Nys, Rocky, Lawton, Rebecca J., and Paul, Nicholas A. (2014) Methods for the induction of reproduction in a tropical species of filamentous Ulva. PLoS ONE, 9 (5). pp. 1-10.

Militz, T.A., Southgate, P.C., Carton, A.G., and Hutson, K.S. (2014) Efficacy of garlic (Allium sativum) extract applied as a therapeutic immersion treatment for Neobenedenia sp. management in aquaculture. Journal of Fish Diseases, 37 (5). pp. 451-461.

Brandl, Simon J., and Bellwood, David R. (2014) Individual-based analyses reveal limited functional overlap in a coral reef fish community. Journal of Animal Ecology, 83 (3). pp. 661-670.

Donelson, Jennifer M., McCormick, Mark I., Booth, David J., and Munday, Philip L. (2014) Reproductive acclimation to increased water temperature in a tropical reef fish. PLoS ONE, 9 (5). pp. 1-9.

Agha, Ramsy, Lezcano, María Ángeles, Labrador, María del Mar, Cirés, Samuel, and Quesada, Antonio (2014) Seasonal dynamics and sedimentation patterns of Microcystis oligopeptide-based chemotypes reveal subpopulations with different ecological traits. Limnology and Oceanography, 59 (3). pp. 861-871.

Abdul Wahab, Muhammad, Fromont, J., Whalan, S., Webster, N., and Andreakis, N. (2014) Combining morphometrics with molecular taxonomy: how different are similar foliose keratose sponges from the Australian tropics? Molecular Phylogenetics and Evolution, 73. pp. 23-39.

Stella, J.S, Munday, P.L., Walker, S.P.W., Pratchett, M.S., and Jones, G.P. (2014) From cooperation to combat: adverse effect of thermal stress in a symbiotic coral-crustacean community. Oecologia, 174 (4). pp. 1187-1195.

Clements, Kendall D., Angert, Esther R., Montgomery, W. Linn, and Choat, Howard (2014) Intestinal microbiota in fishes: what's known and what's not. Molecular Ecology, 23 (8). pp. 1891-1898.

Poulos, Davina E., and McCormick, Mark I. (2014) Who wins in the battle for space? The importance of priority, behavioural history and size. Animal Behaviour, 90. pp. 305-314.

Lawton, Rebecca J., de Nys, Rocky, Skinner , Stephen, and Paul, Nicholas A. (2014) Isolation and identification of Oedogonium species and strains for biomass applications. PLoS ONE, 9 (3). pp. 1-9.

Tremblay, P., Grover, R., Maguer, J.F., Hoogenboom, M., and Ferrier-Pagès, C. (2014) Carbon translocation from symbiont to host depends on irradiance and food availability in the tropical coral Stylophora pistillata. Coral Reefs, 33 (1). pp. 1-13.

Vucko, M.J., King, P.C., Poole, A.J., Hu, Yi, Jahedi, M.Z., and de Nys, R. (2014) Assessing the antifouling properties of cold-spray metal embedment using loading density gradients of metal particles. Biofouling, 30 (6). pp. 651-666.

Tang, Lei, Smith-Keune, Carolyn, Gardner, Michael G., and Hardesty, Britta Denise (2014) Development, characterisation and cross-species amplification of 16 novel microsatellite markers for the endangered Blackthroated Finch (Poephila cincta) in Australia. Conservation Genetics Resources, 6 (1). pp. 143-146.

Ban, Stephen S., Graham, Nicholas A.J., and Connolly, Sean R. (2014) Evidence for multiple stressor interactions and effects on coral reefs. Global Change Biology, 20 (3). pp. 681-697.

Baker, Ronald, Buckland, Amanda, and Sheaves, Marcus (2014) Fish gut content analysis: robust measures of diet composition. Fish and Fisheries, 15 (1). pp. 170-177.

D'agata, Stéphanie, Mouillot, David, Kulbicki, Michel, Andréföuet, Serge, Bellwood, David R., Cinner, Joshua E., Cowman, Peter F., Kronen, Mecki, Pinca, Silvia, and Vigliola, Laurent (2014) Human-mediated loss of phylogenetic and functional diversity in coral reef fishes. Current Biology, 24 (5). pp. 555-560.

Wakefield, Corey B., Williams, Ashley, Newman, Steve J., Bunel, Melanie, Dowling, Christopher E., Armstrong, Chella A., and Langlois, Tim J. (2014) Rapid and reliable multivariate discrimination for two cryptic Eteline snappers using otolith morphometry. Fisheries Research , 151. pp. 100-106.

Welsh, Stuart A., Jerry, Dean R., and Burrows, Damien W. (2014) A new species of freshwater eel-tailed catfish of the genus Tandanus (Teleostei: Plotosidae) from the wet tropics region of Eastern Australia. Copeia, 1. pp. 136-142.

Chung, Wen-Sung, Marshall, N. Justin, Watson, Sue-Ann, Munday, Philip L., and Nilsson, Göran E. (2014) Ocean acidification slows retinal function in a damselfish through interference with GABAA receptors. Journal of Experimental Biology, 217. pp. 323-326.

Hobbs, J.-P.A., Frisch, A.J., Mutz, S., and Ford, B.M. (2014) Evaluating the effectiveness of teeth and dorsal fin spines for non-lethal age estimation of a tropical reef fish, coral trout Plectropomus leopardus. Journal of Fish Biology, 84 (2). pp. 328-338.

Chivers, Douglas P., McCormick, Mark I., Nilsson, Göran E., Munday, Philip L., Watson, Sue-Ann, Meekan, Mark, Mitchell, Matthew D., Corkill, Katherine C., and Ferrari, Maud C.O. (2014) Impaired learning about predators and lower survival under elevated CO2: a consequence of neurotransmitter interference. Global Change Biology, 20 (2). pp. 515-522.

Gamble, S., Carton, A.G., and Pirozzi, I. (2014) Open-top static respirometry is a reliable method to determine the routine metabolic rate of barramundi, Lates calcarifer. Marine and Freshwater Behaviour and Physiology, 47 (1). pp. 19-28.

Kingsford, M.J., Finn, M.D., O'Callaghan, M.D., Atema, J., and Gerlach, G. (2014) Planktonic larval duration, age and growth of Ostorhinchus doederleini (Pisces: Apogonidae) on the southern Great Barrier Reef, Australia. Marine Biology, 161 (2). pp. 245-259.

Angell, Alex R., Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2014) Variation in amino acid content and its relationship to nitrogen content and growth rate in Ulva ohnoi (Chlorophyta). Journal of Phycology, 50 (1). pp. 216-226.

Domenici, Paolo, Allan, Bridie J.M., Watson, Sue-Ann, McCormick, Mark I., and Munday, Philip L. (2014) Shifting from right to left: the combined effect of elevated CO2 and temperature on behavioural lateralization in a coral reef fish. PLoS One, 9 (1). pp. 1-6.

Paul, Nicholas A., Svensson, Carl Johan, de Nys, Rocky, and Steinberg, Peter D. (2014) Simple growth patterns can create complex trajectories for the ontogeny of constitutive chemical defences in seaweeds. PLoS ONE, 9 (1). pp. 1-10.

Taylor, Brett M. (2014) Drivers of protogynous sex change differ across spatial scales. Proceedings of the Royal Society of London Series B, Biological Sciences, 281 (1775). pp. 1-8.

Machado, Lorenna, Magnusson, Marie, Paul, Nicholas A., de Nys, Rocky, and Tomkins, Nigel (2014) Effects of marine and freshwater macroalgae on in vitro total gas and methane production. PLoS ONE, 9 (1). pp. 1-11.

Frisch, Ashley J., Ireland, Matthew, and Baker, Ronald (2014) Trophic ecology of large predatory reef fishes: energy pathways, trophic level, and implications for fisheries in a changing climate. Marine Biology, 161 (1). pp. 61-73.

McNamara, M.K.A., Miller, T.L., and Cribb, T.H. (2014) Evidence for extensive cryptic speciation in trematodes of butterflyfishes (Chaetodontidae) of the tropical Indo-West Pacific. International Journal for Parasitology, 44 (1). pp. 37-48.

Bellwood, David R., Hoey, Andrew S., Bellwood, Orpha, and Goatley, Christopher H.R. (2014) Evolution of long-toothed fishes and the changing nature of fish-benthos interactions on coral reefs. Nature Communications, 5. pp. 1-6.

Dixson, Danielle L., Jones, Geoffrey P., Munday, Philip L., Planes, Serge, Pratchett, Morgan S., and Thorrold, Simon R. (2014) Experimental evaluation of imprinting and the role innate preference plays in habitat selection in a coral reef fish. Oecologia, 174 (1). pp. 99-107.

Johansen, Jacob L. (2014) Quantifying water flow within aquatic ecosystems using load cell sensors: a profile of currents experienced by coral reef organisms around Lizard Island, Great Barrier Reef, Australia. PLoS ONE, 9 (1). pp. 1-9.

von der Heyden, Sophie, Beger, Maria, Toonen, Robert J., van Herwerden, Lynne, Juinio-Meñez, Marie Antonette, Ravago-Gotanco, Rachel, Fauvelot, Cecile, and Bernardi, Giacomo (2014) The application of genetics to marine management and conservation: examples from the Indo-Pacific. Bulletin of Marine Science, 90 (1). pp. 123-158.

Pollock, F. Joseph, Wood-Charlson, Elisha M., van Oppen, Madeleine J.H., Bourne, David G., Willis, Bette L., and Weynberg, Karen D. (2014) Abundance and morphology of virus-like particles associated with the coral Acropora hyacinthus differ between healthy and white syndrome-infected states. Marine Ecology - Progress Series, 510. pp. 39-43.

Bowden, A.J., Gardiner, N.M., Couturier, C.S., Stecyk, J.A.W, Nilsson, G.E., Munday, P.L., and Rummer, J.L. (2014) Alterations in gill structure in tropical reef fishes as a result of elevated temperatures. Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 175. pp. 64-71.

Neveux, N., Yuen, A.K.L., Jazrawi, C., Magnusson, M., Haynes, B.S., Masters, A.F., Montoya, A., Paul, N.A., Maschmeyer, T., and de Nys, R. (2014) Biocrude yield and productivity from the hydrothermal liquefaction of marine and freshwater green macroalgae. Bioresource Technology, 155. pp. 334-341.

Davis, Ben, Mattone, Carlo, and Sheaves, Marcus (2014) Bottom-up control regulates patterns of fish connectivity and assemblage structure in coastal wetlands. Marine Ecology Progress Series, 500. pp. 175-186.

Nolan, Matthew J., Miller, Terrence L., Cutmore, Scott C., Cantacessi, Cinzia, and Cribb, Thomas H. (2014) Cardicola beveridgei n. sp. (Digenea: Aporocotylidae) from the mangrove jack, Lutjanus argentimaculatus (Perciformes: Lutjanidae), and C. bullardi n. sp. from the Australian spotted mackerel, Scomberomorus munroi (Perciformes: Scombridae), from the northern Great Barrier Reef. Parasitology International, 63 (5). pp. 735-745.

Hobbs, Jean-Paul A., Newman, Stephen J., Mitsopoulos, Gabby E.A., Travers, Michael J., Skepper, Craig L., Gilligan, Justin J., Allen, Gerald R., Choat, Howard J., and Ayling, Anthony M. (2014) Checklist and new records of Christmas Island fishes: the influence of isolation, biogeography and habitat availability on species abundance and community composition. Raffles Bulletin of Zoology, Supplement No. 30. pp. 184-202.

Sheaves, Marcus, Dichmont, Cathy, Bustamante, Rodrigo, Dale, Patricia, Sporne, Ilva, Deng, Roy, Dutra, Leo, Van Putten, Ingrid, Savina-Rolland, Marie, Brians, Martha, and McLean, Nina (2014) Climate change adaptation strategies to support Australia's estuarine and coastal marine ecosystems. Report. Fisheries Research and Development Corporation, Deakin, Canberra, ACT.

Burge, Colleen A., Eakin, C. Mark, Friedman, Carolyn S., Froelich, Brett, Hershberger, Paul K., Hofmann, Eileen E., Petes, Laura E., Prager, Katherine C., Weil, Ernesto, Willis, Bette, Ford, Susan E., and Harvell, C. Drew (2014) Climate change influences on marine infectious diseases: implications for management and society. Annual Review of Marine Science, 6. pp. 249-277.

Lane, Daniel J., Ashman, Peter J., Zevenhoven, Maria, Hupa, Mikko, van Eyk, Philip J., de Nys, Rocky, Karlström, Oskar, and Lewis, David M. (2014) Combustion behavior of algal biomass: carbon release, nitrogen release, and char reactivity. Energy & Fuels, 28 (1). pp. 41-51.

Kan, Tao, Grierson, Scott, De Nys, Rocky, and Strezov, Vladimir (2014) Comparative assessment of the thermochemical conversion of freshwater and marine micro- and macroalgae. Energy & Fuels, 28 (1). pp. 104-114.

Taylor, B.M., and Choat, J.H. (2014) Comparative demography of commercially important parrotfish species from Micronesia. Journal of Fish Biology, 84 (2). pp. 383-402.

Lal, Monal M., Seeto, Johnson, and Pickering, Timothy D. (2014) Complete larval development of the Monkey River Prawn Macrobrachium lar (Palaemonidae) using a novel greenwater technique. SpringerPlus, 3.

Macintosh, Hugh, de Nys, Rocky, and Whalan, Steve (2014) Contrasting life histories in shipworms: growth, reproductive development and fecundity. Journal of Experimental Marine Biology and Ecology, 459. pp. 80-86.

Rizzari, J.R., and Lönnstedt, O.M. (2014) Cooperative hunting and gregarious behaviour in the zebra lionfish, Dendrochirus zebra. Marine Biodiversity, 44 (4). pp. 467-468.

Katz, Sefano M., Pollock, F. Joseph, Bourne, D.G., and Willis, Bette L. (2014) Crown-of-thorns starfish predation and physical injuries promote brown band disease on corals. Coral Reefs, 33 (3). pp. 705-716.

Munroe, S.E.M., Simpfendorfer, Colin, and Heupel, M.R. (2014) Defining shark ecological specialisation: concepts, context, and examples. Reviews in Fish Biology and Fisheries, 24 (1). pp. 317-331.

Sheaves, Marcus, Abrantes, Kátya G., and Johnston, Ross (2014) Deluge Inlet, a pristine small tropical estuary in north-eastern Australia. In: Wolanski, Eric, (ed.) Estuaries of Australia in 2050 and Beyond. Estuaries of the World . Springer, Dordrecht, The Netherlands, pp. 261-275.

Lobato, Fabio L., Barneche, Diego R., Siqueira, Alexandre C., Liedke, Ana M.R., Lindner, Alberto, Pie, Marcio R., Bellwood, David R., and Floeter, Sergio R. (2014) Diet and diversification in the evolution of coral reef fishes. PLoS ONE, 9 (7). pp. 1-11.

Tuller, James, De Santis, Christian, and Jerry, Dean R. (2014) Dietary influence of Fucoidan supplementation on growth of Lates calcarifer (Bloch). Aquaculture Research, 45 (4). pp. 749-754.

Udyawer, Vinay, Cappo, Mike, Simpfendorfer, Colin A., Heupel, Michelle R., and Lukoschek, Vimoksalehi (2014) Distribution of sea snakes in the Great Barrier Reef Marine Park: observations from 10 yrs of baited remote underwater video station (BRUVS) sampling. Coral Reefs, 33 (3). pp. 777-791.

McLean, Montana F., Simpfendorfer, Colin A., Heupel, Michelle R., Dadswell, Michael J., and Stokesbury, Michael J.W. (2014) Diversity of behavioural patterns displayed by a summer feeding aggregation of Atlantic sturgeon in the intertidal region of Minas Basin, Bay of Fundy, Canada. Marine Ecology Progress Series, 496. pp. 59-69.

Kleinteich, J., Hildebrand, F., Wood, S.A., Cirés, Samuel, Agha, R., Quesada, A., Pearce, D.A., Convey, P., Küpper, F.C., and Dietrich, D.R. (2014) Diversity of toxin and non-toxin containing cyanobacterial mats of meltwater ponds on the Antarctic Peninsula: a pyrosequencing approach. Antarctic Science, 26 (5). pp. 521-532.

Rizzari, Justin R., Frisch, Ashley J., and Magnenat, Katalin A. (2014) Diversity, abundance, and distribution of reef sharks on outer-shelf reefs of the Great Barrier Reef, Australia. Marine Biology, 161 (12). pp. 2847-2855.

De Jesus-Ayson, Evelyn Grace, Ayson, Felix G., and Thepot, Valentin (2014) Early development and seed production of Asian seabass, Lates calcarifer. In: Jerry, Dean R., (ed.) Biology and Culture of Asian Seabass Lates Calcarifer. CRC Press, Boca Raton, FL, USA, pp. 16-30.

Domingos, Jose A., Smith-Keune, Carolyn, Harrison, Paul, and Jerry, Dean R. (2014) Early prediction of long-term family growth performance based on cellular processes: a tool to expedite the establishment of superior foundation broodstock in breeding programs. Aquaculture, 428-429. pp. 88-96.

Trave, Claudia, and Sheaves, Marcus (2014) Ecotone analysis: assessing the impact of vehicle transit on saltmarsh crab population and ecosystem. SpringerPlus, 3 (1). pp. 1-9.

Collins, Geoffrey M., Ball, Andrew S., Qin, Jian G., Bowyer, Jenna N., and Stone, David A.J. (2014) Effect of alternative lipids and temperature on growth factor gene expression in yellowtail kingfish (Seriola lalandi). Aquaculture Research, 45 (7). pp. 1236-1245.

Islam, Muhammad Aminul, Brown, Richard J., O'Hara, Ian, Kent, Megan, and Heimann, Kirsten (2014) Effect of temperature and moisture on high pressure lipid/oil extraction from microalgae. Energy Conversion and Management, 88. pp. 307-316.

Athauda, Saman, and Anderson, Trevor (2014) Effect of temperature and salinity on sex inversion in Asian Seabass (Lates calcarifer): relationship with plasma sex steroids concentration and aromatase activity of gonad and brain. Aquaculture Research, 45. pp. 787-797.

Welch, Megan J., Welsh, Justin Q., Watson, Sue-Ann, McCormick, Mark I., and Munday, Philip (2014) Effects of elevated CO(2) on fish behaviour undiminished by transgenerational acclimation. Nature Climate Change, 4. pp. 1086-1089.

Carter, Alex B., Davies, Campbell R., Mapstone, Bruce D., Russ, Garry R., Tobin, Andrew J., and Williams, Ashley J. (2014) Effects of region, demography, and protection from fishing on batch fecundity of common coral trout (Plectropomus leopardus). Coral Reefs, 33 (3). pp. 751-763.

Waltrick, Daniela, Jones, Susan M., Simpfendorfer, Colin A., and Awruch, Cynthia A. (2014) Endocrine control of embryonic diapause in the Australian sharpnose shark Rhizoprionodon taylori. PLoS One, 9 (7). pp. 1-10.

Jerry, Dean, Noble, Tansyn, Robson, Heather, and Burrows, Damien (2014) Environmental DNA (eDNA) survey of Tilapia in the lower Pioneer catchment. Report. James Cook University, Townsville, QLD, Australia.

Jerry, Dean, Noble, Tansyn, Robson, Heather, and Burrows, Damien (2014) Environmental DNA (eDNA) survey of Tilapia infestations in the Fitzroy River Basin. Report. James Cook University, Townsville, QLD, Australia.

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Magnusson, Marie, Heimann, Kirsten, Ridd, Michael, and Negri, Andrew P. (2013) Pesticide contamination and phytotoxicity of sediment interstitial water to tropical benthic microalgae. Water Research, 47 (14). pp. 5211-5221.

Botté, Emmanuelle S., Smith-Keune, Carolyn, and Jerry, Dean R. (2013) Temperature: a prolonged confounding factor on cholinesterase activity in the tropical reef fish Acanthochromis polyacanthus. Aquatic Toxicology, 140-141. pp. 337-339.

Todd, Erica V., Blair, David, Farley, Sharon, Farrington, Lachlan, FitzSimmons, Nancy N., Georges, Arthur, Limpus, Colin J., and Jerry, Dean R. (2013) Contemporary genetic structure reflects historical drainage isolation in an Australian snapping turtle, Elseya albagula. Zoological Journal of the Linnean Society, 169 (1). pp. 200-214.

Silva Leal, Isabela Carolina, Cipresso Pereira, Pedro Herique, and de Araújo, Maria Elisabeth (2013) Coral reef fish association and behaviour on the fire coral Millepora spp. in north-east Brazil. Journal of the Marine Biological Association of the United Kingdom, 93 (6). pp. 1703-1711.

Haapkylä, J., Melbourne-Thomas, J., Flavell, M., and Willis, B.L. (2013) Disease outbreaks, bleaching and a cyclone drive changes in coral assemblages on an inshore reef of the Great Barrier Reef. Coral Reefs, 32 (3). pp. 815-824.

Boaden, A.E., and Kingsford, M.J. (2013) Distributions and habitat associations of the bridled monocle bream Scolopsis bilineatus (Nemipteridae): a demographic approach. Journal of Fish Biology, 83 (3). pp. 618-641.

Hodge, Jennifer R., Read, Charmaine I., Bellwood, David R., and van Herwerden, Lynne (2013) Evolution of sympatric species: a case study of the coral reef fish genus Pomacanthus (Pomacanthidae). Journal of Biogeography, 40 (9). pp. 1676-1687.

Brooker, R.M., Munday, P.L., Mcleod, I.M., and Jones, G.P. (2013) Habitat preferences of a corallivorous reef fish: predation risk versus food quality. Coral Reefs, 32 (3). pp. 613-622.

Baker, Ronald, Fry, Brian, Rozas, Lawrence P., and Minello, Thomas J. (2013) Hydrodynamic regulation of salt marsh contributions to aquatic food webs. Marine Ecology Progress Series, 490. pp. 37-52.

Montanari, Stefano R., Gardner, Michael G., Hobbs, Jean-Paul A., Pratchett, Morgan S., Bay, Line K., and van Herwerden, Lynne (2013) Isolation and characterization of twenty microsatellite markers for the study of hybridization in butterflyfish of the genus Chaetodon. Conservation Genetics Resources, 5 (3). pp. 783-786.

Brandl, S.J., and Bellwood, D.R. (2013) Morphology, sociality, and ecology: can morphology predict pairing behavior in coral reef fishes? Coral Reefs, 32 (3). pp. 835-846.

Taylor, B.M., and Mills, J.S. (2013) Movement and spawning migration patterns suggest small marine reserves can offer adequate protection for exploited emperorfishes. Coral Reefs, 32 (4). pp. 1077-1087.

Horne, John B., Momigliano, Paolo, van Herwerden, Lynne, and Newman, Stephen J. (2013) Murky waters: searching for structure in genetically depauperate blue threadfin populations of Western Australia. Fisheries Research, 146. pp. 1-6.

Newton, James R., Zenger, Kyall R., and Jerry, Dean R. (2013) Next-generation transcriptome profiling reveals insights into genetic factors contributing to growth differences and temperature adaptation in Australian populations of barramundi (Lates calcarifer). Marine Genomics, 11. pp. 45-52.

Lönnstedt, Oona M., Munday, Philip L., McCormick, Mark I., Ferrari, Maud C.O., and Chivers, Douglas P. (2013) Ocean acidification and responses to predators: can sensory redundancy reduce the apparent impacts of elevated CO2 on fish? Ecology and Evolution, 3 (10). pp. 3565-3575.

Johansen, J.L., and Jones, G.P. (2013) Sediment-induced turbidity impairs foraging performance and prey choice of planktivorous coral reef fishes. Ecological Applications, 23 (6). pp. 1504-1517.

Fulton, C.J., Binning, S.A., Wainwright, P.C., and Bellwood, D.R. (2013) Wave-induced abiotic stress shapes phenotypic diversity in a coral reef fish across a geographical cline. Coral Reefs, 32 (3). pp. 685-689.

Shaw, Emily C., Munday, Philip L., and McNeil, Ben I. (2013) The role of CO₂ variability and exposure time for biological impacts of ocean acidification. Geophysical Research Letters, 40 (17). pp. 4685-4688.

Paris, Claire B., Atema, Jelle, Irisson, Jean-Olivier, Kingsford, Michael, Gerlach, Gabriele, and Guigand, Cedric M. (2013) Reef odor: a wake up call for navigation in reef fish larvae. PLoS ONE, 8 (8). pp. 1-8.

Leduc, Antoine O.H.C., Munday, Philip L., Brown, Grant E., and Ferrari, Maud C.O, (2013) Effects of acidification on olfactory-mediated behaviour in freshwater and marine ecosystems: a synthesis. Philosophical Transactions of the Royal Society B: Biological Sciences, 368 (1627). pp. 1-14.

Cowman, Peter F., and Bellwood, David R. (2013) Vicariance across major marine biogeographic barriers: temporal concordance and the relative intensity of hard versus soft barriers. Proceedings of the Royal Society of London Series B, Biological Sciences, 280 (1768). pp. 1-8.

Cutmore, Scott C., Miller, Terrence L., Curran, Stephen S., Bennett, Michael B., and Cribb, Thomas H. (2013) Phylogenetic relationships of the Gorgoderidae (Platyhelminthes: Trematoda), including the proposal of a new subfamily (Degeneriinae n. subfam.). Parasitology Research, 112 (8). pp. 3063-3074.

Loughnan, Shannon R., Domingos, Jose A., Smith-Keune, Carolyn, Forrester, Justin P., Jerry, Dean R., Beheregaray, Luciano B., and Robinson, Nicholas A. (2013) Broodstock contribution after mass spawning and size grading in barramundi (Lates calcarifer, Bloch). Aquaculture, 404-405. pp. 139-149.

Munday, Philip L., Pratchett, Morgan S., Dixson, Danielle L., Donelson, Jennifer M., Endo, Geoff G.K., Reynolds, Adam D., and Knuckey, Richard (2013) Elevated CO2 affects the behavior of an ecologically and economically important coral reef fish. Marine Biology, 160 (8). pp. 2137-2144.

Blowes, Shane A., Pratchett, Morgan S., and Connolly, Sean R. (2013) Heterospecific aggression and dominance in a guild of coral-feeding fishes: the roles of dietary ecology and phylogeny. American Naturalist, 182 (2). pp. 157-168.

Richards, Zoe T., Syms, Craig, Wallace, Carden C., Muir, Paul R., and Willis, Bette L. (2013) Multiple occupancy–abundance patterns in staghorn coral communities. Diversity and Distributions, 19 (8). pp. 884-895.

Bourne, David G., van der Zee, Marc J.J., Botté, Emmanuelle S., and Sato, Yui (2013) Sulfur-oxidizing bacterial populations within cyanobacterial dominated coral disease lesions. Environmental Microbiology Reports, 5 (4). pp. 518-524.

Miller, T.L., and Adlard, R.D. (2013) Unicapsula species (Myxosporea: Trilosporidae) of Australian marine fishes, including the description of Unicapsula andersenae n. sp. in five teleost families off Queensland, Australia. Parasitology Research, 112 (8). pp. 2945-2957.

Goopy, J.P., deNys, R., Callaghan, M., and Parker, A. (2013) Vitamin A status of heifers fed a diet deficient in Beta Carotene. In: Proceedings of the Northern Beef Research Update Conference, p. 168. From: Northern Beef Research Update Conference , 12-15 August 2013, Cairns, QLD, Australia.

Yong, R.Q-Y., Cutmore, S.C., Miller, T.L., Adlard, R.D., and Cribb, T.H. (2013) The ghost of parasites past: eggs of the blood fluke Cardicola chaetodontis (Aporocotylidae) trapped in the heart and gills of butterflyfishes (Perciformes: Chaetodontidae) of the Great Barrier Reef. Parasitology, 140 (9). pp. 1186-1194.

Feary, David A., Burt, John A., Bauman, Andrew G., Al Hazeem, Shaker, Abdel-Moati, Mohamed A., Al-Khalifa, Khalifa A., Anderson, Donald M., Amos, Carl, Baker, Andrew, Bartholomew, Aaron, Bento, Rita, Cavalcante, Geórgenes H., Chen, Chaolun Allen, Coles, Steve L., Dab, Koosha, Fowler, Ashley M., George, David, Grandcourt, Edwin, Hill, Ross, John, David M., Jones, David A., Keshavmurthy, Shashank, Mahmoud, Huda, Tapeh, Mahdi Moradi Och, Mostafavi, Pargol Ghavam, Naser, Humood, Pichon, Michel, Purkis, Sam, Riegl, Bernhard, Samimi-Namin, Kaveh, Sheppard, Charles, Samiei, Jahangir Vajed, Voolstra, Christian R., and Wiedenmann, Joerg (2013) Critical research needs for identifying future changes in Gulf coral reef ecosystems. Marine Pollution Bulletin, 72 (2). pp. 406-416.

Stephens, Evan, de Nys, Rocky, Ross, Ian L., and Hankamer, Ben (2013) Algae fuels as an alternative to petroleum. Journal of Petroleum & Environmental Biotechnology, 4 (4). pp. 1-7.

Leahy, Susannah M., Kingsford, Michael J., and Steinberg, Craig R. (2013) Do clouds save the Great Barrier Reef? Satellite imagery elucidates the cloud-SST relationship at the local scale. PLoS ONE, 8 (7). pp. 1-12.

Wen, Colin Kuo-Chang, Chen, Kao-Song, Hsieh, Hernyi Justin, Hsu, Chia-Min, and Chen, Chaolun Allen (2013) High coral cover and subsequent high fish richness on mature breakwaters in Taiwan. Marine Pollution Bulletin, 72 (1). pp. 55-63.

Bott, Nathan J., Miller, Terrence L., and Cribb, Thomas H. (2013) Bucephalidae (Platyhelminthes: Digenea) of Plectropomus (Serranidae: Epinephelinae) in the tropical Pacific. Parasitology Research, 112 (7). pp. 2561-2584.

Hughes, Terry P., Connolly, Sean R., and Keith, Sally A. (2013) Geographic ranges of reef corals (Cnidaria: Anthozoa: Scleractinia) in the Indo-Pacific. Ecology, 94 (7). p. 1659.

Domingos, Jose A., Smith-Keune, Carolyn, Robinson, Nicholas, Loughnan, Shannon, Harrison, Paul, and Jerry, Dean R. (2013) Heritability of harvest growth traits and genotype–environment interactions in barramundi, Lates calcarifer (Bloch). Aquaculture, 402-403. pp. 66-75.

Mitchell, Matthew D., and McCormick, Mark I. (2013) Ontogenetic differences in chemical alarm cue production determine antipredator responses and learned predator recognition. Behavioural Ecology and Sociobiology, 67 (7). pp. 1123-1129.

Howells, Emily J., Willis, Bette L., Bay, Line K., and van Oppen, Madeleine J.H. (2013) Spatial and temporal genetic structure of Symbiodinium populations within a common reef-building coral on the Great Barrier Reef. Molecular Ecology, 22 (14). pp. 3693-3708.

White, James R., Meekan, Mark G., McCormick, Mark I., and Ferrari, Maud C.O. (2013) A comparison of field measures of boldness and their relationships to survival in young fish. PLoS ONE, 8 (7). pp. 1-11.

Underwood, Avril H., Taylor, Sandra, and Seymour, Jamie E. (2013) Range extension of the Cubozoan, Tripedalia binata Moore (Cnideria: Carybdeida: Carybdeidae) from far north Queensland, Australia. Memoirs of the Queensland Museum - Nature, 56 (2). pp. 607-614.

Mouritsen, Henrik, Atema, Jelle, Kingsford, Michael J., and Gerlach, Gabriele (2013) Sun compass orientation helps coral reef fish larvae return to their natal reef. PLoS ONE, 8 (6). pp. 1-16.

Galaiduk, Ronen, Figueira, Will F., Kingsford, Michael J., and Curley, Belinda G. (2013) Factors driving the biogeographic distribution of two temperate Australian damselfishes and ramifications for range shifts. Marine Ecology Progress Series, 484. pp. 189-202.

DiBattista, Joseph D., Berumen, Michael L., Gaither, Michelle R., Rocha, Luiz A., Eble, Jeff A., Choat, J. Howard, Craig, Matthew, Skillings, Derek J., and Bowen, Brian W. (2013) After continents divide: comparative phylogeography of reef fishes from the Red Sea and Indian Ocean. Journal of Biogeography, 40 (6). pp. 1170-1181.

Petersen, Elizabeth H., Jones, Clive, and Priyambodo, Bayu (2013) Bioeconomics of spiny lobster farming in Indonesia. Asian Journal of Agriculture and Development, 10 (1). pp. 25-39.

Frost, Ashley J., Thompson, Jack S., Smith, Charlotte, Burton, Hannah C., Davis, Ben, Watts, Phillip C., and Sneddon, Lynne U. (2013) Environmental change alters personality in the rainbow trout, Oncorhynchus mykiss. Animal Behaviour, 85 (6). pp. 1199-1207.

Sadovy de Mitcheson, Yvonne, Craig, Matthew T., Bertoncini, Athila A., Carpenter, Kent E., Cheung, William W.L., Choat, John H., Cornish, Andrew S., Fennessy, Sean T., Ferreira, Beatrice, Heemstra, Philip C., Liu, Min, Myers, Robert F., Pollard, David A., Rhodes, Kevin L., Rocha, Luiz A., Russell, Barry C., Samoilys, Melita A., and Sanciangco, Jonnell (2013) Fishing groupers towards extinction: a global assessment of threats and extinction risks in a billion dollar fishery. Fish and Fisheries, 14 (2). pp. 119-136.

van der Meer, Martin H., Gardner, Michael G., Berumen, Michael L., Hobbs, Jean-Paul A., and Van Herwerden, Lynne (2013) Identification of seventeen microsatellite loci for conservation genetic studies of the endemic wrasse Coris bulbifrons. Conservation Genetics Resources, 5 (2). pp. 363-366.

van der Meer, Martin H., Horne, John B., Gardner, Michael G., Hobbs, Jean-Paul A., Pratchett, Morgan, and van Herwerden, Lynne (2013) Limited contemporary gene flow and high self-replenishment drives peripheral isolation in an endemic coral reef fish. Ecology and Evolution, 3 (6). pp. 1653-1666.

Brandl, S.J., and Bellwood, D.R. (2013) Pair formation in the herbivorous rabbitfish Siganus doliatus. Journal of Fish Biology, 82 (6). pp. 2031-2044.

Brooker, Rohan M., Jones, Geoffrey P., and Munday, Philip L. (2013) Prey selectivity affects reproductive success of a corallivorous reef fish. Oecologia, 172 (2). pp. 409-416.

Graham, E.M., Baird, A.H., Connolly, S.R., Sewell, M.A., and Willis, B.L. (2013) Rapid declines in metabolism explain extended coral larval longevity. Coral Reefs, 32 (2). pp. 539-549.

Wenger, A.S., McCormick, M.I., McLeod, I.M., and Jones, G.P. (2013) Suspended sediment alters predator–prey interactions between two coral reef fishes. Coral Reefs, 32 (2). pp. 369-374.

Kramer, M.J., Bellwood, O., and Bellwood, D.R. (2013) The trophic importance of algal turfs for coral reef fishes: the crustacean link. Coral Reefs, 32 (2). pp. 575-583.

Mouillot, David, Bellwood, David R., Baraloto, Christopher, Chave, Jerome, Galzin, Rene, Harmelin-Vivien, Mireille, Kulbicki, Michel, Lavergne, Sebastien, Lavorel, Sandra, Mouquet, Nicolas, Paine, C.E. Timothy, Renaud, Julien, and Thuiller, Wilfried (2013) Rare species support vulnerable functions in high-diversity ecosystems. PLoS Biology, 11 (5). pp. 1-11.

Lawton, Rebecca J., de Nys, Rocky, and Paul, Nicholas (2013) Selecting reliable and robust freshwater macroalgae for biomass applications. PLoS ONE, 8 (5). pp. 1-7.

Wenger, Amelia S., and McCormick, Mark I. (2013) Determining trigger values of suspended sediment for behavioral changes in a coral reef fish. Marine Pollution Bulletin, 70 (1-2). pp. 73-80.

Tapiolas, Dianne M., Raina, Jean-Baptiste, Lutz, Adrian, Willis, Bette L., and Motti, Cherie A. (2013) Direct measurement of dimethylsulfoniopropionate (DMSP) in reef-building corals using quantitative nuclear magnetic resonance (qNMR) spectroscopy. Journal of Experimental Marine Biology and Ecology, 443. pp. 85-89.

Howells, Emily J., Berkelmans, Ray, van Oppen, Madeleine J.H., Willis, Bette L., and Bay, Line K. (2013) Historical thermal regimes define limits to coral acclimatization. Ecology, 94 (5). pp. 1078-1088.

Coppock, Amy G., Gardiner, Naomi M., and Jones, Geoffrey P. (2013) Olfactory discrimination in juvenile coral reef fishes: response to conspecifics and corals. Journal of Experimental Marine Biology and Ecology, 443. pp. 21-26.

von Alvensleben, Nicolas, Stookey, Katherine, Magnusson, Marie, and Heimann, Kirsten (2013) Salinity tolerance of Picochlorum atomus and the use of salinity for contamination control by the freshwater cyanobacterium Pseudanabaena limnetica. PLoS ONE, 8 (5). pp. 1-12.

Udyawer, Vinay, Chin, Andrew, Knip, Danielle M., Simpfendorfer, Colin A., and Heupel, Michelle R. (2013) Variable response of coastal sharks to severe tropical storms: environmental cues and changes in space use. Marine Ecology Progress Series, 480. pp. 171-183.

Almany, Glenn R., Hamilton, Richard J., Bode, Michael, Matawai, Manuai, Potuku, Tapas, Saenz-Agudelo, Pablo, Planes, Serge, Berumen, Michael L., Rhodes, Kevin L., Thorrold, Simon R., Russ, Garry R., and Jones, Geoffrey P. (2013) Dispersal of grouper larvae drives local resource sharing in a coral reef fishery. Current Biology, 23 (7). pp. 626-630.

Pereira, P.H.C., and Ferreira, B.P. (2013) Effects of life phase and schooling patterns on the foraging behaviour of coral-reef fishes from the genus Haemulon. Journal of Fish Biology, 82 (4). pp. 1226-1238.

Mitchell, Matthew D., McCormick, Mark I., Chivers, Douglas P., and Ferrari, Maud C.O. (2013) Generalization of learned predator recognition in coral reef ecosystems: how cautious are damselfish? Functional Ecology, 27 (2). pp. 299-304.

Rhodes, K.L., Taylor, B.M., Wichilmel, C.B., Joseph, E., Hamilton, R.J., and Almany, G.R. (2013) Reproductive biology of squaretail coralgrouper Plectropomus areolatus using age-based techniques. Journal of Fish Biology, 82 (4). pp. 1333-1350.

Roy, Alexandra-Sophie, Frisch, Ashley J., Syms, Craig, Thorrold, Simon R., and Jones, Geoffrey P. (2013) Retention of a transgenerational marker (137Barium) in tissues of adult female anemonefish and assessment of physiological stress. Environmental Biology of Fishes, 96 (4). pp. 459-466.

Manassa, R.P., and McCormick, M.I. (2013) Social learning improves survivorship at a life-history transition. Oecologia, 171 (4). pp. 845-852.

Pratchett, M.S., Graham, N.A.J., and Cole, A.J. (2013) Specialist corallivores dominate butterflyfish assemblages in coral-dominated reef habitats. Journal of Fish Biology, 82 (4). pp. 1177-1191.

Johansson, C.L., Bellwood, D.R., Depczynski, M., and Hoey, A.S. (2013) The distribution of the sea urchin Echinometra mathaei (de Blainville) and its predators on Ningaloo Reef, Western Australia: the implications for top-down control in an intact reef system. Journal of Experimental Marine Biology and Ecology, 442. pp. 39-46.

Hopf, Jessica, and Kingsford, Michael (2013) The utility of statoliths and bell size to elucidate age and condition of a scyphomedusa (Cassiopea sp.). Marine Biology, 160 (4). pp. 951-960.

Seymour, Scott, Paul, Nicholas A., Dworjanyn, Symon A., and de Nys, Rocky (2013) Feeding preference and performance in the tropical sea urchin Tripneustes gratilla. Aquaculture, 400-401. pp. 6-13.

Castine, Sarah A., Paul, Nicholas A., Magnusson, Marie, Bird, Michael I., and de Nys, Rocky (2013) Algal bioproducts derived from suspended solids in intensive land-based aquaculture. Bioresource Technology, 131. pp. 113-120.

Pearson, R.G., Godfrey, P.C., Arthington, A.H., Wallace, J., Karim, F., and Ellison, M. (2013) Biophysical status of remnant freshwater floodplain lagoons in the Great Barrier Reef catchment: a challenge for assessment and monitoring. Marine and Freshwater Research, 64 (3). pp. 208-222.

Dao, Hoc Tan, Todd, Erica V., and Jerry, Dean R. (2013) Characterization of polymorphic microsatellite loci for the spiny lobster Panulirus spp. and their utility to be applied to other Panulirus lobsters. Conservation Genetics Resources, 5 (1). pp. 43-46.

Currey, L.M., Williams, A.J., Mapstone, B.D., Davies, C.R., Carlos, G., Welch, D.J., Simpfendorfer, C.A., Ballagh, A.C., Penny, A.L., Grandecourt, E.M., Mapleston, A., Wiebkin, A.S., and Bean, K. (2013) Comparative biology of tropical Lethrinus species (Emperors): challenges for multi-species management. Journal of Fish Biology, 82 (3). pp. 764-788.

Jiang, Jie-Lan, Wang, Gui-Zhong, Mao, Ming-Guang, Wang, Ke-Jian, Li, Shao-Jing, and Zeng, Chao-Shu (2013) Differential gene expression profile of the calanoid copepod, Pseudodiaptomus annandalei, in response to nickel exposure. Comparative Biochemistry and Physiology - Part C, 157 (2). pp. 203-211.

Garda, Adrian A., Wiederhecker, Helga C., Gainsbury, Allison M., Costa, Gabriel C., Pyron, Alexander, Calazans Vieira, Gustavo H., Werneck, Fernanda P., and Colli, Guarino R. (2013) Microhabitat variation explains local-scale distribution of terrestrial Amazonian lizards in Rondônia, Western Brazil. Biotropica, 45 (2). pp. 245-252.

Inkster-Draper, Tamara E., Sheaves, Marcus, Johnson, Christopher N., and Robson, Simon K.A. (2013) Prescribed fire in eucalypt woodlands: immediate effects on a microbat community of northern Australia. Wildlife Research, 40 (1). pp. 70-76.

Liu, Zi-Ming, Wang, Gui-Zhong, Wu, Li-Sheng, Zeng, Zhao-Shu, and Chen, Xue-Lei (2013) Seasonal change in mitochondrial function and metabolic enzyme activity of different populations of the mud crab, Scylla paramamosain, from China. Aquaculture, 376-379. pp. 68-75.

Pereira, Pedro H.C., Feitosa, João L.L., Medeiros, Diego V., and Ferreira, Beatrice P. (2013) Reef fishes foraging facilitation behavior: increasing the access to a food resource. Acta Ethologica, 16 (1). pp. 53-56.

King, Peter C., Poole, Andrew J. , Horne, Susan, de Nys, Rocky, Gulizia, Stefan, and Jahedi, Mahnaz Z. (2013) Embedment of copper particles into polymers by cold spray. Surface and Coatings Technology, 216. pp. 60-67.

Roberts, David A., Birchenough, Silvana N.R., Lewis, Ceri, Sanders, Matthew B., Bolam, Thi, and Sheahan, Dave (2013) Ocean acidification increases the toxicity of contaminated sediments. Global Change Biology, 19 (2). pp. 340-351.

Harrison, Hugo B., Saenz-Agudelo, Pablo, Planes, Serge, Jones, Geoffrey P., and Berumen, Michael L. (2013) Relative accuracy of three common methods of parentage analysis in natural populations. Molecular Ecology, 22 (4). pp. 1158-1170.

Thibaut, Loïc M., and Connolly, Sean R. (2013) Understanding diversity–stability relationships: towards a unified model of portfolio effects. Ecology Letters, 16 (2). pp. 140-150.

Cowman, Peter F., and Bellwood, David R. (2013) The historical biogeography of coral reef fishes: global patterns of origination and dispersal. Journal of Biogeography, 40 (2). pp. 209-224.

Sheaves, Marcus (2013) Mangrove fish assemblages and ecological equivalence: reply to Castellanos-Galindo & Krumme (2013). Marine Ecology Progress Series, 474. pp. 303-304.

Fulton, Christopher J., Johansen, Jacob L., and Steffensen, John F. (2013) Energetic extremes in aquatic locomotion by coral reef fishes. PLoS ONE, 8 (1). pp. 1-6.

Busilacchi, Sara, Russ, Garry R., Williams, Ashley J., Sutton, Stephen G., and Begg, Gavin A. (2013) The role of subsistence fishing in the hybrid economy of an indigenous community. Marine Policy, 37. pp. 183-191.

Verhaert, Vera, Covaci, Adrian, Bouillon, Steven, Abrantes, Katya, Musibono, Dieudonné, Bervoets, Lieven, Verheyen, Erik, and Blust, Ronny (2013) Baseline levels and trophic transfer of persistent organic pollutants in sediments and biota from the Congo River Basin (DR Congo). Environment International, 59. pp. 290-302.

Creighton, Colin, Sawynok, Bill, Sutton, Stephen, D'Silva, Dallas, Stagles, Ian, Pam, Christine, Saunders, Richard, Welch, David, Grixti, Daniel, and Spooner, Daniel (2013) Climate Change and Recreational Fishing: implications of climate change for recreational fishers and the recreational fishing industry. Report. Fisheries Reserach and Development Corporation, Canberra, ACT.

McLeod, Ian M., Rummer, Jodie L., Clark, Timothy D., Jones, Geoffrey P., McCormick, Mark I., Wenger, Amelia S., and Munday, Philip L. (2013) Climate change and the performance of larval coral reef fishes: the interaction between temperature and food availability. Conservation Physiology, 1 (1). pp. 1-12.

Vucko, M.J., Poole , A.J., Sexton , B.A., Glenn, F.L., Carl, C., Whalan, S., and de Nys, R. (2013) Combining a photocatalyst with microtopography to develop effective antifouling materials. Biofouling, 29 (7). pp. 751-762.

Huerlimann, Roger, and Heimann, Kirsten (2013) Comprehensive guide to acetyl-carboxylases in algae. Critical reviews in Biotechnology, 33 (1). pp. 49-65.

Chaves, L.T.C., Pereira, P.H.C., and Feitosa, J.L.L. (2013) Coral reef fish association with macroalgal beds on a tropical reef system in North-eastern Brazil. Marine and Freshwater Research, 64 (12). pp. 1101-1111.

Nash, Kirsty L., Graham, Nicholas A.J., Wilson, Shaun K., and Bellwood, David R. (2013) Cross-scale habitat structure drives fish body size distributions on coral reefs. Ecosystems, 16 (3). pp. 478-490.

Pollock, F.J., Katz, S.M., Bourne, D.G., and Willis, B.L. (2013) Cymo melanodactylus crabs slow progression of white syndrome lesions on corals. Coral Reefs, 32 (1). pp. 43-48.

Zhu, Youjian, Ashman, Peter J., Wang, Dingbiao, Kwong, Philip, and De Nys, Rocky (2013) Devolatilization characteristics of Oedogonium sp., Loy Yang coal and their blends using thermogravimetric analysis. In: Proceedings of the Australian Combustion Symposium, pp. 250-253. From: Australian Combustion Symposium, 6-8 November 2013, Perth, Western Australia.

Jones, B., Fuller, S., and Carton, A.G. (2013) Earthy-muddy tainting of cultured barramundi linked to geosmin in tropical northern Australia. Aquaculture Environment Interactions , 3 (2). pp. 117-124.

Jones, G.P. (2013) Ecology of rocky reef fish of northeastern New Zealand: 50 years on. New Zealand Journal of Marine and Freshwater Research, 47 (3). pp. 334-359.

Yarmohammadi, M., Shabani, A., Pourkazemi, M., Soltanloo, H., Imanpour, M.R., Ramezanpour, S., Smith-Keune, C., and Jerry, D.R. (2013) Effects of starvation and re-feeding on compensatory growth performance, plasma metabolites and IGF-I gene expression of Persian sturgeon (Acipenser persicus, Borodin 1897). Iranian Journal of Fisheries Sciences, 12 (2). pp. 465-483.

Allan, Bridie J.M., Domenici, Paolo, McCormick, Mark I., Watson, Sue-Ann, and Munday, Philip L. (2013) Elevated CO2 affects predator-prey interactions through altered performance. PLoS One, 8 (3). pp. 1-7.

Rummer, Jodie L., Stecyk, Jonathan A.W., Couturier, Christine, Watson, Sue-Ann, Nilsson, Göran E., and Munday, Philip L. (2013) Elevated CO₂ enhances aerobic scope of a coral reef fish. Conservation Physiology, 1 (1). pp. 1-7.

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Grenchik, M.K., Donelson, J.M., and Munday, P.L. (2013) Evidence for developmental thermal acclimation in the damselfish, Pomacentrus moluccensis. Coral Reefs, 32 (1). pp. 85-90.

Parravicini, V., Kulbicki, M., Bellwood, D.R., Friedlander, A.M., Arias-Gonzalez, J.E., Chabanet, P., Floeter, S.R, Myers, R., Vigliola, L., D'Agata, S., and Mouillot, D. (2013) Global patterns and predictors of tropical reef fish species richness. Ecography, 36 (12). pp. 1254-1262.

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Islam, Muhammad Aminul, Magnusson, Marie, Brown, Richard J., Ayoko, Godwin A., Nabi, Md. Nurun, and Heimann, Kirsten (2013) Microalgal species selection for biodiesel production based on fuel properties derived from fatty acid profiles. Energies, 6 (11). pp. 5676-5702.

Stride, M.C., Polkinghorne, A., Miller, T.L., Groff, J.M., LaPatra, S.E., and Nowak, B.F. (2013) Molecular characterization of "Candidatus Parilichlamydia carangidicola," a novel Chlamydia-like epitheliocystis agent in Yellowtail Kingfish, Seriola lalandi (Valenciennes), and the proposal of a new family, "Candidatus Parilichlamydiaceae" fam. nov. (Order Chlamydiales). Applied and Environmental Microbiology, 79 (5). pp. 1590-1597.

Stride, M.C., Polkinghorne, A., Miller, T.L., and Nowak, B.F. (2013) Molecular characterization of "Candidatus Similichlamydia latridicola" gen. nov., sp. nov. (Chlamydiales: "Candidatus Parilichlamydiaceae"), a novel Chlamydia-like epitheliocystis agent in the Striped Trumpeter, Latris lineata (Forster). Applied and Environmental Microbiology, 79 (16). pp. 4914-4920.

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Sheaves, Marcus, Johnston, Ross, Johnson, Ashlee, Baker, Ronald, and Connolly, Rod M. (2013) Nursery function drives temporal patterns in fish assemblage structure in four tropical estuaries. Estuaries and Coasts, 36 (5). pp. 893-905.

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Kingsford, Michael J. (2013) Paradigms for planktonic assemblages: 50 years of contributions from the Leigh Marine Laboratory, Northland, New Zealand. New Zealand Journal of Marine and Freshwater Research, 47 (3). pp. 294-312.

Neaves, Linda E., Zenger, Kyall R., Prince, Robert I.T., and Eldridge, Mark D.B. (2013) Paternally inherited genetic markers reveal new insights into genetic structuring within Macropus fuliginosus and hybridisation with sympatric Macropus giganteus. Australian Journal of Zoology, 61 (1). pp. 58-68.

Vucko, M.J., King, P.C, Poole, A.J., Jahedi, M.Z, and De Nys, R. (2013) Polyurethane seismic streamer skins: an application of cold spray metal embedment. Biofouling, 29 (1). pp. 1-9.

Chin, A., Tobin, A.J., Heupel, M.R., and Simpfendorfer, C.A. (2013) Population structure and residency patterns of the blacktip reef shark Carcharhinus melanopterus in turbid coastal environments. Journal of Fish Biology, 82 (4). pp. 1192-1210.

Lonnstedt, Oona M., McCormick, Mark I., and Chivers, Douglas P. (2013) Predator-induced changes in the growth of eyes and false eyespots. Scientific Reports, 3. pp. 1-5.

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Wen, Colin K.C., Almany, Glenn R., Williamson, David H., Pratchett, Morgan S., Mannering, Thomas D., Evans, Richard D., Leis, Jeffrey M., Srinivasan, Maya, and Jones, Geoffrey P. (2013) Recruitment hotspots boost the effectiveness of no-take marine reserves. Biological Conservation, 166. pp. 124-131.

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Sheaves, M., and Molony, B. (2013) Reproductive periodicity of the sparid, Acanthopagrus pacificus, on a hierarchy of temporal scales. Journal of Fish Biology, 82 (2). pp. 538-554.

Chick, Rowan C., Worthington, Duncan G., and Kingsford, Michael J. (2013) Restocking depleted wild stocks—long-term survival and impact of released blacklip abalone (Haliotis rubra) on depleted wild populations in New South Wales, Australia. Reviews in Fisheries Science, 21 (3-4). pp. 321-340.

Torda, G., Lundgren, P., Willis, B. L., and van Oppen, M.J.H. (2013) Revisiting the connectivity puzzle of the common coral Pocillopora damicornis. Molecular Ecology, 22 (23). pp. 5805-5820.

Wen, Colin K.C., Pratchett, Morgan S., Almany, Glenn R., and Jones, Geoffrey P. (2013) Role of prey availability in microhabitat preferences of juvenile coral trout (Plectropomus: Serranidae). Journal of Experimental Marine Biology and Ecology, 443. pp. 39-45.

Chan, Neil C.S., and Connolly, Sean R. (2013) Sensitivity of coral calcification to ocean acidification: a meta-analysis. Global Change Biology, 19 (1). pp. 282-290.

Manassa, R.P., McCormick, M.I., Chivers, D.P., and Ferrari, M.C.O. (2013) Social learning of predators in the dark: understanding the role of visual, chemical and mechanical information. Proceedings of the Royal Society of London Series B, Biological Sciences, 280 (1765). pp. 1-8.

Manassa, R.P., McCormick, M.I., and Chivers, D.P. (2013) Socially acquired predator recognition in complex ecosystems. Behavioral Ecology and Sociobiology, 67 (7). pp. 1033-1040.

Madin, J.S., Dell, A.I., Madin, E.M.P., and Nash, M.C. (2013) Spatial variation in mechanical properties of coral reef substrate and implications for coral colony integrity. Coral Reefs, 32 (1). pp. 173-179.

Januchowski-Hartley, Fraser, Graham, Nicholas A.J., Cinner, Joshua E., and Russ, Garry R. (2013) Spillover of fish naïveté from marine reserves. Ecology Letters, 16 (2). pp. 191-197.

White, James R., McCormick, Mark I., and Meekan, Mark G. (2013) Syndromes or flexibility: behavior during a life history transition of a coral reef fish. PLoS ONE, 8 (12). pp. 1-9.

Gyuris, Emma, and Castell, Laura (2013) Tell them or show them? How to improve science students' skills of critical reading. International Journal of Innovation in Science and Mathematics Education, 21 ( 1). pp. 70-80.

Li, Yan, Mangott, Arnold, Grierson, Scott, and Schenk, Peer M. (2013) Thinking outside of the box: potential of zooplankton for microalgae harvesting. Biofuels, 4 (3). pp. 263-266.

Romano, Nicholas, and Zeng, Chaoshu (2013) Toxic effects of ammonia, nitrite, and nitrate to decapod crustaceans: a review on factors influencing their toxicity, physiological consequences, and coping mechanisms. Reviews in Fisheries Science, 21 (1). pp. 1-21.

Heimann, Kirsten, Karthikayan, Obulisamy P, and Cires, Samuel (2013) Turning bad gas into good solids. Queensland Mining Energy Bulletin (Spring). pp. 92-96.

Lönnstedt, Oona M., and McCormick, Mark I. (2013) Ultimate predators: lionfish have evolved to circumvent prey risk assessment abilities. PLoS ONE, 8 (10). pp. 1-8.

Chin, Andrew, Simpfendorfer, Colin, Tobin, Andrew, and Heupel, Michelle (2013) Validated age, growth and reproductive biology of Carcharhinus melanopterus, a widely distributed and exploited reef shark. Marine and Freshwater Research, 64 (10). pp. 965-975.

Jerry R., Dean, Smith-Keune, Carolyn, Hodgson, Lauren, Pirozzi, Igor, Carton, A. Guy, Hutson, Kate S., Brazenor, Alexander K., Trujillo Gonzalez, Alejandro, Gamble, Stephen, Collins, Geoff, and Vanderwal, Jeremy (2013) Vulnerability of an Iconic Australian Finfish (Barramundi - Lates calcarifer) and Aligned Industries to Climate Change across Tropical Australia. Report. Fisheries Research and Development Corporation, Douglas, QLD, Australia.

Castine, Sarah A., McKinnon, A. David, Paul, Nicholas A., Trott, Lindsay A., and de Nys, Rocky (2013) Wastewater treatment for land-based aquaculture: improvements and value-adding alternatives in model systems from Australia. Aquaculture Environment Interactions, 4 (3). pp. 285-300.

Nicolet, K.J., Hoogenboom, M.O., Gardiner, N.M., Pratchett, M.S., and Willis, B.L. (2013) The corallivorous invertebrate Drupella aids in transmission of brown band disease on the Great Barrier Reef. Coral Reefs, 32 (2). pp. 585-595.

Bloecher, Nina, de Nys, Rocky, Poole, Andrew J., and Guenther, Jana (2013) The fouling hydroid Ectopleura larynx: a lack of effect of next generation antifouling technologies. Biofouling, 29 (3). pp. 237-246.

Lukoschek, Vimoksalehi, Cross, Peter, Torda, Gergely, Zimmerman, Rachel, and Willis, Bette L. (2013) The importance of coral larval recruitment for the recovery of reefs impacted by Cyclone Yasi in the central Great Barrier Reef. PLoS ONE, 8 (6). pp. 1-11.

Hutson, Kate S., Mata, Leonardo, Paul, Nicholas A., and De Nys, Rocky (2012) Seaweed extracts as a natural control against the monogenean ectoparasite, Neobenedenia sp., infecting farmed barramundi (Lates calcarifer). International Journal for Parasitology, 42 (13-14). pp. 1135-1141.

Donelson, Jennifer, Munday, Philip, McCormick, Mark, and Pitcher, C.R. (2012) Rapid transgenerational acclimation of a tropical reef fish to climate change. Nature Climate Change, 2. pp. 30-32.

van de Water, Jeroen A.J.M., van Oppen, Madeleine J.H., and Willis, Bette (2012) Absence of skeleton deposition in juveniles of the scleractinian coral Acropora millepora. Coral Reefs, 31 (4). p. 1111.

Puill-Stephan, E., Willis, B.L., Abrego, D., Raina, J-B., and van Oppen, M.J.H. (2012) Allorecognition maturation in the broadcast-spawning coral Acropora millepora. Coral Reefs, 31 (4). pp. 1019-1028.

Sun, D., Blomberg, S.P., Cribb, T.H., McCormick, M.I., and Grutter, A.S. (2012) The effects of parasites on the early life stages of a damselfish. Coral Reefs, 31 (4). pp. 1065-1075.

Wen, Colin K., Almany, Glenn R., Williamson, David H., Pratchett, Morgan S., and Jones, Geoffrey P. (2012) Evaluating the effects of marine reserves on diet, prey availability and prey selection by juvenile predatory fishes. Marine Ecology Progress Series, 469. pp. 133-144.

Januchowski-Hartley, Fraser, Nash, Kirsty, and Lawton, Rebecca (2012) Influence of spear guns, dive gear and observers on estimating fish flight initiation distance on coral reefs. Marine Ecology Progress Series, 469. pp. 113-119.

Gehrke, P., Sheaves, M., Figa, B., Boseto, D., Terry, J., Wani, J., and Ellison, J. (2012) Climate change prospects for freshwater fisheries in the tropical pacific. Water, 39 (7). pp. 81-86.

Lind, Curtis E., Evans, Brad S., Elphinstone, Martin S., Taylor, Joseph J.U., and Jerry, Dean R. (2012) Phylogeography of a pearl oyster (Pinctada maxima) across the Indo-Australian Archipelago: evidence of strong regional structure and population expansions but no phylogenetic breaks. Biological Journal of the Linnean Society, 107 (3). pp. 632-646.

Purcell, Steven W., Hair, Cathy A., and Mills, David J. (2012) Sea cucumber culture, farming and sea ranching in the tropics: progress, problems and opportunities. Aquaculture, 368-369. pp. 68-81.

Munday, Philip L., McCormick, Mark I., Meekan, Mark, Dixson, Danielle L., Watson, Sue-Ann, Chivers, Douglas P., and Ferrari, Maud C.O. (2012) Selective mortality associated with variation in CO2 tolerance in a marine fish. Ocean Acidification, 1 (1). pp. 1-5.

Bode, Michael, Connolly, Sean R., and Pandolfi, John M. (2012) Species differences drive nonneutral structure in Pleistocene coral communities. American Naturalist, 180 (5). pp. 577-588.

Gosch, Björn J., Magnusson, Marie, Paul, Nicholas A., and de Nys, Rocky (2012) Total lipid and fatty acid composition of seaweeds for the selection of species for oil-based biofuel and bioproducts. GCB Bioenergy, 4 (6). pp. 919-930.

Carl, C., Poole, A.J., Vucko, M.J., Williams, M.R., Whalan, S., and De Nys, R. (2012) Enhancing the efficacy of fouling-release coatings against fouling by Mytilus galloprovincialis using nanofillers. Biofouling, 28 (10). pp. 1077-1091.

Bellwood, David R., Baird, Andrew H., Depczynski, Martial, González-Cabello, Alonso, Hoey, Andrew S., Lefevre, Carine D., and Tanner, Jennifer K. (2012) Coral recovery may not herald the return of fishes on damaged coral reefs. Oecologia, 170 (2). 1- 7.

Palmer, C. V., Graham, E., and Baird, A. H. (2012) Immunity through early development of coral larvae. Developmental and Comparative Immunology, 38 (2). 395-399.

McCormick, Mark I. (2012) Lethal effects of habitat degradation on fishes through changing competitive advantage. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1744). pp. 3899-3904.

Watson, Sue-Ann, Peck, Lloyd S., Tyler, Paul A., Southgate, Paul C., Tan, Koh Siang, Day, Robert W., and Morley, Simon A. (2012) Marine invertebrate skeleton size varies with latitude, temperature and carbonate saturation: implications for global change and ocean acidification. Global Change Biology, 18 (10). pp. 3026-3038.

Watson, Sue-Ann, Southgate, Paul C., Miller, Gabrielle M., Moorhead, Jonathan A., and Knauer, Jens (2012) Ocean acidification and warming reduce juvenile survival of the fluted giant clam, Tridacna squamosa. Molluscan Research, 32 (3). pp. 177-180.

Castine, Sarah A., Erler, Dirk V., Trott, Lindsay A., Paul, Nicholas A., De Nys, Rocky, and Eyre, Bradley D. (2012) Denitrification and anammox in tropical aquaculture settlement ponds: an isotope tracer approach for evaluating N2 production. PLoS ONE, 7 (9).

Manassa, R.P., and McCormick, M.I. (2012) Risk assessment via predator diet cues in a coral reef goby. Journal of Experimental Marine Biology and Ecology, 426-427. pp. 48-52.

de Santis, Christian, Gomes, Giana B., and Jerry, Dean R. (2012) Abundance of myostatin gene transcripts and their correlation with muscle hypertrophy during the development of barramundi, Lates calcarifer. Comparative Biochemistry and Physiology-Part B: biochemistry & molecular biology, 163 (1). pp. 101-107.

Boaden, A.E., and Kingsford, M.J. (2012) Diel behaviour and trophic ecology of Scolopsis bilineatus (Nemipteridae). Coral Reefs, 31 (3). pp. 871-883.

Figueiredo, Joana, and Connolly, Sean R. (2012) Dispersal-mediated coexistence under recruitment limitation and displacement competition. Ecological Modelling, 243. pp. 133-142.

Palmer, C.V., Bythell, J.C., and Willis, B.L. (2012) Enzyme activity demonstrates multiple pathways of innate immunity in Indo-Pacific anthozoans. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1743). pp. 3879-3887.

Feeney, W.E., Lönnstedt, O.M., Bosiger, Y., Martin, J., Jones, G.P., Rowe, R.J., and McCormick, M.I. (2012) High rate of prey consumption in a small predatory fish on coral reefs. Coral Reefs, 31 (3). pp. 909-918.

Pratchett, Morgan S., Coker, Darren J., Jones, Geoffrey P., and Munday, Philip L. (2012) Specialization in habitat use by coral reef damselfishes and their susceptibility to habitat loss. Ecology and Evolution, 2 (9). pp. 2168-2180.

Berkstrom, Charlotte, Jones, Geoffrey P., McCormick, Mark I., and Srinivasan, Maya (2012) Ecological versatility and its importance for the distribution and abundance of coral reef wrasses. Marine Ecology Progress Series, 461. pp. 151-163.

Sheaves, Marcus (2012) Ecosystem equivalence and the ability to generalise: insights from global consistencies in mangrove fish assemblages. Marine Ecology Progress Series, 461. pp. 137-149.

Kelly, Jenny, Saggers, Sherry, Taylor, Kylie, Pearce , Glenn, Massey, Peter, Bull, Jennifer, Odo, Travis, Thomas, John, Billycan, Rosita, Judd, Jenni, Reilly, Susan, and Ahboo, Shayne (2012) "Makes you proud to be black eh?": Reflections on meaningful Indigenous research participation. International Journal for Equity in Health, 11 (40). pp. 1-15.

de Paula Silva, Pedro H., De Nys, Rocky, and Paul, Nicholas A. (2012) Seasonal growth dynamics and resilience of the green tide alga Cladophora coelothrix in high-nutrient tropical aquaculture. Aquaculture Environment Interactions , 2 (3). pp. 253-266.

Macintosh, Hugh, De Nys, Rocky, and Whalan, Stephen (2012) Shipworms as a model for competition and coexistence in specialized habitats. Marine Ecology Progress Series, 461. pp. 95-105.

Knip, Danielle M., Heupel, Michelle R., and Simpfendorfer, Colin A. (2012) Mortality rates for two shark species occupying a shared coastal environment. Fisheries Research, 125-126. pp. 184-189.

Moore, Bradley R., Simpfendorfer, Colin A., Newman, Stephen J., Stapley, Jason M., Allsop, Quentin, Sellin, Michelle J., and Welch, David J. (2012) Spatial variation in life history reveals insight into connectivity and geographic population structure of a tropical estuarine teleost: king threadfin, Polydactylus macrochir. Fisheries Research, 125-126. pp. 214-224.

Chong-Seng, Karen M., Mannering, Thomas D., Pratchett, Morgan S., Bellwood, David R., and Graham, Nicholas A.J. (2012) The influence of coral reef benthic condition on associated fish assemblages. PLoS ONE, 7 (8). pp. 1-10.

Kingsford, M.J., Seymour, J.E., and O'Callaghan, M.D. (2012) Abundance patterns of cubozoans on and near the Great Barrier Reef. Hydrobiologia, 690 (1). pp. 257-268.

Olsen, Esben Moland, Heupel, Michelle R., Simpfendorfer, Colin A., and Moland, Even (2012) Harvest selection on Atlantic cod behavioral traits: implications for spatial management. Ecology and Evolution, 2 (7). pp. 1549-1562.

Dixson, Danielle L., Pratchett, Morgan S., and Munday, Philip L. (2012) Reef fishes innately distinguish predators based on olfactory cues associated with recent prey items rather than individual species. Animal Behaviour, 84 (1). pp. 45-51.

Camus, Thomas, and Zeng, Chaoshu (2012) Reproductive performance, survival and development of nauplii and copepodites, sex ratio and adult life expectancy of the harpacticoid copepod, Euterpina acutifrons, fed different microalgal diets. Aquaculture Research, 43 (8). pp. 1159-1169.

Manassa, R.P., and McCormick, M.I. (2012) Social learning and acquired recognition of a predator by a marine fish. Animal Cognition, 15 (4). pp. 559-565.

Mooney, C. J., and Kingsford, M. J. (2012) Sources and movements of Chironex fleckeri medusae using statolith elemental chemistry. Hydrobiologia, 690 (1). pp. 269-277.

Templeman, Michelle A., and Kingsford, Michael J. (2012) Variation in soft tissue chemistry among scyphozoan and cubozoan jellyfishes from the Great Barrier Reef, Australia. Hydrobiologia, 690 (1). pp. 279-290.

Newton, J.R., De Santis, C., and Jerry, D.R. (2012) The gene expression response of the catadromous perciform barramundi Lates calcarifer to an acute heat stress. Journal of Fish Biology, 81 (1). pp. 81-93.

Nash, Kirsty L., Graham, Nicholas A.J., Januchowski-Hartley, Fraser A., and Bellwood, David R. (2012) Influence of habitat condition and competition on foraging behaviour of parrotfishes. Marine Ecology Progress Series, 457. pp. 113-124.

Noonan, Sam H.C., Jones, Geoffrey P., and Pratchett, Morgan S. (2012) Coral size, health and structural complexity: effects on the ecology of a coral reef damselfish. Marine Ecology Progress Series, 456. pp. 127-137.

Harrison, Hugo B., Williamson, David H., Evans, Richard D., Almany, Glenn R., Thorrold, Simon R., Russ, Garry R., Feldheim, Kevin A., van Herwerden, Lynne, Planes, Serge, Srinivasan, Maya, Berumen, Michael L., and Jones, Geoffrey P. (2012) Larval export from marine reserves and the recruitment benefit for fish and fisheries. Current Biology, 22 (11). pp. 1023-1028.

Ferrari, Maud C.O., McCormick, Mark I., Munday, Philip L., Meekan, Mark G., Dixson, Danielle, Lönnstedt, Oona, and Chivers, Douglas P. (2012) Effects of ocean acidification on visual risk assessment in coral reef fishes. Functional Ecology, 26 (3). pp. 553-558.

Lönnstedt, Oona M., McCormick, Mark I., Meekan, Mark G., Ferrari, Maud C.O., and Chivers, Douglas P. (2012) Learn and live: predator experience and feeding history determines prey behaviour and survival. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1736). pp. 2091-2098.

Whitney, Nicholas M., Robbins, William D., Schultz, Jennifer K., Bowen, Brian W., and Holland, Kim N. (2012) Oceanic dispersal in a sedentary reef shark (Triaenodon obesus): genetic evidence for extensive connectivity without a pelagic larval stage. Journal of Biogeography, 39 (6). pp. 1144-1156.

Milione, Michael, and Southgate, Paul C. (2012) Reproductive cycle of the winged pearl oyster, Pteria penguin (Röding 1793) (Pteriidae) in north-eastern Australia. Invertebrate Reproduction and Development, 56 (2). pp. 164-171.

Ballagh, Aaron C., Welch, David J., Newman, Stephen J., Allsop, Quentin, and Stapley, Jason M. (2012) Stock structure of the blue threadfin (Eleutheronema tetradactylum) across northern Australia derived from life-history characteristics. Fisheries Research, 121-122. pp. 63-72.

Buston, Peter M., Jones, Geoffrey P., Planes, Serge, and Thorrold, Simon R. (2012) Probability of successful larval dispersal declines fivefold over 1 km in a coral reef fish. Proceedings of the Royal Society of London B: Biological Sciences, 279 (1735). pp. 1883-1888.

Luter, Heidi M., Whalan, Stephen, and Webster, Nicole S. (2012) The marine sponge Ianthella basta can recover from stress-induced tissue regression. Hydrobiologia, 687 (1). pp. 227-235.

Domingos, J.A., Fromm, P., Smith-Keune, C., and Jerry, D.R. (2012) A robust flow-cytometric protocol for assessing growth rate of hatchery-reared barramundi Lates calcarifer larvae. Journal of Fish Biology, 80 (6). pp. 2253-2266.

Hughes, Terry P., Baird, Andrew H., Dinsdale, Elizabeth A., Moltschaniwskyj, Natalie A., Pratchett, Morgan S., Tanner, Jason E., and Willis, Bette L. (2012) Assembly rules of reef corals are flexible along a steep climatic gradient. Current Biology, 22 (8). pp. 736-741.

Andutta, Fernando P., Kingsford, Michael J., and Wolanski, Eric (2012) 'Sticky water' enables the retention of larvae in a reef mosaic. Estuarine, Coastal and Shelf Science , 101. pp. 54-63.

Simpfendorfer, Colin A., and Heupel, Michelle R. (2012) Assessing habitat use and movement. In: Carrier, Jeffrey C., Musick, John A., and Heithaus, Michael R., (eds.) Biology of Sharks and Their Relatives. CRC Marine Biology Series . CRC Press, London, UK, pp. 579-601.

Morgan, Jess A.T., Harry, Alastair V., Welch, David J., Street, Raewyn, White, Jimmy, Geraghty, Pascal T., Macbeth, William G., Tobin, Andrew, Simpfendorfer, Colin A., and Ovenden, Jennifer R. (2012) Detection of interspecies hybridisation in Chondrichthyes: hybrids and hybrid offspring between Australian (Carcharhinus tilstoni) and common (C. limbatus) blacktip shark found in an Australian fishery. Conservation Genetics, 13 (2). pp. 455-463.

Thibaut, Loïc M., Connolly, Sean R., and Sweatman, Hugh P.A. (2012) Diversity and stability of herbivorous fishes on coral reefs. Ecology, 93 (4). pp. 891-901.

Knip, Danielle M., Heupel, Michelle R., and Simpfendorfer, Colin A. (2012) Evaluating marine protected areas for the conservation of tropical coastal sharks. Biological Conservation, 148 (1). pp. 200-209.

Tziouveli, V., Hall, M., and Smith, G.G. (2012) Evaluation of lipid-enriched Artemia on the reproductive performance of the white-striped cleaner shrimp, Lysmata amboinensis. Aquaculture International, 20 (2). pp. 201-211.

Jerry, Dean R., Kvingedal, Renate, Lind, Curtis E., Evans, Brad S., Taylor, Joseph J.U., and Safari, Alex E. (2012) Donor-oyster derived heritability estimates and the effect of genotype × environment interaction on the production of pearl quality traits in the silver-lip pearl oyster, Pinctada maxima. Aquaculture, 338-341. pp. 66-71.

Vucko, M.V., King, P.C., Poole, A.J., Carl, C., Jahedi, M.Z., and de Nys, R. (2012) Cold spray metal embedment: an innovative antifouling technology. Biofouling, 28 (3). pp. 239-248.

Coker, Darren J., Pratchett, Morgan S., and Munday, Philip L. (2012) Influence of coral bleaching, coral mortality and conspecific aggression on movement and distribution of coral-dwelling fish. Journal of Experimental Marine Biology and Ecology, 414-415. pp. 62-68.

Horne, John B., Momigliano, Paolo, Welch, David J., Newman, Stephen J., and Van Herwerden, Lynne (2012) Searching for common threads in threadfins: phylogeography of Australian polynemids in space and time. Marine Ecology Progress Series, 449. pp. 263-276.

Berumen, M.L., Trip, E.D.L., Pratchett, M.S., and Choat, J.H. (2012) Differences in demographic traits of four butterflyfish species between two reefs of the Great Barrier Reef separated by 1,200 km. Coral Reefs, 31 (1). pp. 169-177.

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Carl, C., Poole, A.J., Sexton, B.A., Glenn, F.L., Vucko, M.J., Williams, M.R., Whalan, S., and de Nys, R. (2012) Enhancing the settlement and attachment strength of pediveligers of Mytilus galloprovincialis by changing surface wettability and microtopography. Biofouling, 28 (2). pp. 175-186.

Stella, Jessica (2012) Evidence of corallivory by the keyhole limpet Diodora galeata. Coral Reefs, 31 (2). p. 579.

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Milione, Michael, and Southgate, Paul (2012) Growth of the winged pearl oyster, Pteria penguin, at dissimilar sites in northeastern Australia. Journal of Shellfish Research, 31 (1). pp. 13-20.

Briffa, Mark, de la Haye, Kate, and Munday, Philip L. (2012) High CO2 and marine animal behaviour: potential mechanisms and ecological consequences. Marine Pollution Bulletin, 64 (8). pp. 1519-1528.

Todd, Erica V., Blair, David, Limpus, Colin J., Limpus, Duncan J., and Jerry, Dean R. (2012) High incidence of multiple paternity in an Australian snapping turtle (Elseya albagula). Australian Journal of Zoology, 60 (6). pp. 412-418.

van der Meer, M.H., Jones, G.P., Hobbs, J.-P.A., and Van Herwerden, L. (2012) Historic hybridization and introgression between two iconic Australian anemonefish and contemporary patterns of population connectivity. Ecology and Evolution, 2 (7). pp. 1592-1604.

Welsh, J.Q., and Bellwood, D.R. (2012) How far do schools of roving herbivores rove? A case study using Scarus rivulatus. Coral Reefs, 31 (4). pp. 991-1003.

Bellwood, David R., Hoey, Andrew S., and Hughes, Terence P. (2012) Human activity selectively impacts the ecosystem roles of parrotfishes on coral reefs. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1733). pp. 1621-1629.

van der Meer, Martin H., Gardner, Michael G., Hobbs, Jean-Paul A., Jones, G.P., and van Herwerden, Lynne (2012) Identification of seventeen microsatellite markers for conservation genetic studies of the endemic anemonefish, Amphiprion mccullochi. Conservation Genetics Resources, 4 (2). pp. 247-250.

van der Meer, Martin H., Gardiner, Michael G., Hobbs, Jean-Paul A., Pratchett, Morgan, and van Herwerden, Lynne (2012) Identification of twenty one microsatellite loci for conservation genetic studies of the endemic butterflyfish Chaetodon tricinctus. Conservation Genetics, 4 (2). pp. 243-246.

Neaves, Linda E., Zenger, Kyall R., Prince, Robert I.T., and Eldridge, Mark D.B. (2012) Impact of Pleistocene aridity oscillations on the population history of a widespread, vagile Australian mammal, Macropus fuliginosus. Journal of Biogeography, 39 (8). pp. 1545-1563.

Munday, Philip L., McCormick, Mark I., and Nilsson, Göran E. (2012) Impact of global warming and rising CO₂ levels on coral reef fishes: what hope for the future? The Journal of Experimental Biology, 215. pp. 3865-3873.

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Romano, Nicholas, Zeng, Chaoshu, Mat Noordin, Noordiyana, and Ng, Wing-Keong (2012) Improving the survival, growth and hemolymph ion maintenance of early juvenile blue swimmer crabs, Portunus pelagicus, at hypo- and hyper-osmotic conditions through dietary long chain PUFA supplementation. Aquaculture, 342-343. pp. 24-30.

Wenger, Amelia S., Johansen, Jacob L., and Jones, Geoffrey P. (2012) Increasing suspended sediment reduces foraging, growth and condition of a planktivorous damselfish. Journal of Experimental Marine Biology and Ecology, 428. pp. 43-48.

Takahashi, Miwa, McCormick, Mark, Munday, Philip, and Jones, Geoffrey (2012) Influence of seasonal and latitudinal temperature variation on early life-history traits of a coral reef fish. Marine and Freshwater Research, 63. pp. 856-864.

Nowicki, Jessica P., Miller, Gabrielle M., and Munday, Philip L. (2012) Interactive effects of elevated temperature and CO2 on foraging behavior of juvenile coral reef fish. Journal of Experimental Marine Biology and Ecology, 412. pp. 46-51.

Carrette, Teresa J., Underwood, Avril H., and Seymour, Jamie E. (2012) Irukandji syndrome: a widely misunderstood and poorly researched tropical marine envenoming. Diving and Hyperbaric Medicine, 42 (4). pp. 214-223.

McCormick, Mark I., and Weaver, Christine J. (2012) It pays to be pushy: intracohort interference competition between two reef fishes. PLoS ONE, 7 (8). pp. 1-12.

Bosiger, Yoland J., Lonnstedt, Oona M., McCormick, Mark I., and Ferrari, Maud C.O. (2012) Learning temporal patterns of risk in a predator-diverse environment. PLoS ONE, 7 (4). pp. 1-7.

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Macintosh, Hugh (2012) Lyrodus turnerae, a new teredinid from eastern Australia and the Coral Sea (Bivalvia: Teredinidae). Molluscan Research, 31 (1). pp. 36-42.

Taylor, Brett, McIlwain, Jennifer L., and Kerr, Alexander (2012) Marine reserves and reproductive biomass: a case study of a heavily targeted reef fish. PLoS One, 7 (6). pp. 1-16.

Nilsson, Göran, Dixson, Danielle L., Domenici, Paolo, McCormick, Mark I., Sørensen, Christina, Watson, Sue-Ann, and Munday, Philip L. (2012) Near-future carbon dioxide levels alter fish behaviour by interfering with neurotransmitter function. Nature Climate Change, 2. pp. 201-204.

Malerba, Martino E., Connolly, Sean R., and Heimann, Kirsten (2012) Nitrate–nitrite dynamics and phytoplankton growth: formulation and experimental evaluation of a dynamic model. Limnology and Oceanography, 57 (5). pp. 1555-1571.

Maddams, Jessica Claire, and McCormick, Mark Ian (2012) Not all offspring are created equal: variation in larval characteristics in a serially spawning damselfish. PLoS ONE, 7 (11). pp. 1-10.

Clark, Nicholas J., and Russ, Garry R. (2012) Ontogenetic shifts in the habitat associations of butterflyfishes (F. Chaetodontidae). Environmental Biology of Fishes, 94 (4). pp. 579-590.

Zeng, Chaoshu, Cheng, Yongxu, Lucas, John S., and Southgate, Paul C. (2012) Other decapod crustaceans. In: Lucas, John S., and Southgate, Paul C., (eds.) Aquaculture: farming aquatic animals and plants. Wiley-Blackwell, West Sussex, UK, pp. 514-540.

Jimmy, Robert A., Pickering, Timothy D., and Hair, Cathy A. (2012) Overview of sea cucumber aquaculture and stocking research in the Western Pacific region. Australian Centre for International Agricultural Research Proceedings, 136. pp. 12-21.

Moore, B.R., Welch, D.J., Newman, S.J., and Lester, R.J.G. (2012) Parasites as indicators of movement and population connectivity of a non-diadromous, tropical estuarine teleost: king threadfin Polydactylus macrochir. Journal of Fish Biology, 81 (1). pp. 230-252.

Miller, Gabrielle M., Watson, Sue-Ann, Donelson, Jennifer M., McCormick, Mark I., and Munday, Philip L. (2012) Parental environment mediates impacts of increased carbon dioxide on a coral reef fish. Nature Climate Change, 2. pp. 858-861.

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Eagle, Janelle V., Baird, Andrew H., Jones, Geoffrey P., and Kingsford, Michael J. (2012) Recruitment hotspots: consistent spatial patterns in the relative abundance of coral recruits at One Tree Island, Australia. Galaxea, Journal of Coral Reef Studies, 14 (1). pp. 5-22.

Pereira, Pedro H.C., Feitosa, João L.L., Chaves, Laís C.T., and de Araújo, Maria E. (2012) Reef fish foraging associations: "nuclear-follower" behavior or an ephemeral interaction? In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

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Barnett, Adam, Abrantes, Kátya, Seymour, Jamie, and Fitzpatrick, Richard (2012) Residency and spatial use by reef sharks of an isolated seamount and its implications for conservation. PLoS One, 7 (5). pp. 1-10.

Devine, B.M., Munday, P.L., and Jones, G.P. (2012) Rising CO2 concentrations affect settlement behaviour of larval damselfishes. Coral Reefs, 31 (1). pp. 229-238.

Goatley, Christopher H.R., and Bellwood, David R. (2012) Sediment suppresses herbivory across a coral reef depth gradient. Biology Letters, 8 (6). pp. 1016-1018.

Welsh, J.Q., and Bellwood, D.R. (2012) Spatial ecology of the steephead parrotfish (Chlorurus microrhinos): an evaluation using acoustic telemetry. Coral Reefs, 31 (1). pp. 55-65.

Choat, John Howard (2012) Spawning aggregations in reef fishes; ecological and evolutionary processes. In: Sadovy de Mitcheson, Yvonne, and Colin, Patrick L., (eds.) Reef Fish Spawning Aggregations: biology, research and management. Fish and Fisheries Series, 35 . Springer, Dordrecht, the Netherlands, pp. 85-116.

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Luter, Heidi M., Whalan, Steve, and Webster, Nicole S. (2012) Thermal and sedimentation stress are unlikely causes of brown spot syndrome in the coral reef sponge, Ianthella basta. PLoS ONE, 7 (6). pp. 1-9.

Donelson, Jennifer M., and Munday, Philip L. (2012) Thermal sensitivity does not determine acclimation capacity for a tropical reef fish. Journal of Animal Ecology, 81 (5). pp. 1126-1131.

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Munday, Philip L., Cheal, Alistair J., Graham, Nicholas A.J., Meekan, Mark, Pratchett, Morgan S., Sheaves, Marcus, Sweatman, Hugh, and Wilson, Shaun K. (2012) Tropical coastal fish. In: Ploczanska, E.S., Hobday, A.J., and Richardson, A.J., (eds.) A Marine Climate Change Impacts and Adaptation Report Card for Australia. CSIRO Marine and Atmospheric Research, Brisbane, QLD, Australia, pp. 281-306.

Carl, Christina, Poole, Andrew J., Williams, Mike R., and de Nys, Rocky (2012) Where to settle-settlement preferences of Mytilus galloprovincialis and choice of habitat at a micro spatial scale. PLoS One, 7 (12). pp. 1-10.

Grech, Alana, Chartrand-Miller, Katie, Erftemeijer, Paul, Fonseca, Mark, McKenzie, Len, Rasheed, Michael, Taylor, Helen, and Coles, Rob (2012) A comparison of threats, vulnerabilities and management approaches in global seagrass bioregions. Environmental Research Letters, 7 (2). pp. 1-8.

Kerry, J.T., and Bellwood, D.R. (2012) The effect of coral morphology on shelter selection by coral reef fishes. Coral Reefs, 31 (2). pp. 415-424.

Fitridge, Isla, Dempster, Tim, Guenther, Jana, and de Nys, Rocky (2012) The impact and control of biofouling in marine aquaculture: a review. Biofouling, 28 (7). pp. 649-669.

Johansson, C. L., Bellwood, D. R., and Depczynski, M. (2012) The importance of live coral for small-sized herbivorous reef fishes in physically challenging environments. Marine and Freshwater Research, 63 (8). pp. 672-679.

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Hodge, Jennifer R., Read, Charmaine I., Van Herwerden, Lynne, and Bellwood, David R. (2012) The role of peripheral endemism in species diversification: evidence from the coral reef fish genus Anampses (Family: Labridae). Molecular Phylogenetics and Evolution, 62 (2). pp. 653-663.

Goatley, Christopher H.R., Hoey, Andrew S., and Bellwood, David R. (2012) The role of turtles as coral reef macroherbivores. PLoS One, 7 (6). pp. 1-7.

Simpson, Stephen D, Munday, Philip, Wittenrich, Matthew, Manassa, Rachel, Dixson, Danielle, Gagliano, Monica, and Yan, Hong Y (2011) Ocean acidification erodes crucial auditory behaviour in a marine fish. Biology Letters, 7 (6). pp. 917-920.

Leahy, Susannah, McCormick, Mark I., Mitchell, Matthew D., and Ferrari, Maud C.O. (2011) To fear or to feed: the effects of turbidity on perception of risk by a marine fish. Biology Letters, 7 (6). pp. 811-813.

Pandolfi, John, Connolly, Sean, Marshall, Dustin J., and Cohern, Anne L. (2011) The future of coral reefs - a response. Science, 334 (6062). pp. 1495-1496.

Cowman, P.F., and Bellwood, D.R. (2011) Coral reefs as drivers of cladogenesis: expanding coral reefs, cryptic extinction events, and the development of biodiversity hotspots. Journal of Evolutionary Biology, 24 (12). pp. 2543-2562.

Messmer, Vanessa, Jones, Geoffrey P., Munday, Philip L., Holbrook, Sally J., Schmitt, Russell J., and Brooks, Andrew J. (2011) Habitat biodiversity as a determinant of fish community structure on coral reefs. Ecology, 92 (12). pp. 2285-2298.

Jones, D.B., Zenger, K.R., and Jerry, D.R. (2011) In silico whole-genome EST analysis reveals 2322 novel microsatellites for the silver-lipped pearl oyster, Pinctada maxima. Marine Genomics, 4 (4). pp. 287-290.

Clague, Gillian E., Cheney, Karen L., Goldizen, Anne W., McCormick, Mark I., Waldie, Peter A., and Grutter, Alexandra S. (2011) Long-term cleaner fish presence affects growth of a coral reef fish. Biology Letters, 7 (6). pp. 863-865.

Littman, Raechel, Willis, Bette L., and Bourne, David G. (2011) Metagenomic analysis of the coral holobiont during a natural bleaching event on the Great Barrier Reef. Environmental Microbiology Reports, 3 (6). pp. 651-660.

Vail, Alexander L., and McCormick, Mark I. (2011) Metamorphosing reef fishes avoid predator scent when choosing a home. Biology Letters, 7 (6). pp. 921-924.

Dixson, D.L., Munday, P.L., Pratchett, M., and Jones, G.P. (2011) Ontogenetic changes in responses to settlement cues by anemonefish. Coral Reefs, 30 (4). pp. 903-910.

Wenger, Amelia S., Johansen, J.L., and Jones, G.P. (2011) Suspended sediment impairs habitat choice and chemosensory discrimination in two coral reef fishes. Coral Reefs, 30 (4). pp. 879-887.

Dixson, Danielle L., Jones, Geoffrey P., Munday, Philip L., Pratchett, Morgan S., Srinivasan, Maya, Planes, Serge, and Thorrold, Simon R. (2011) Terrestrial chemical cues help coral reef fish larvae locate settlement habitat surrounding islands. Ecology and Evolution, 1 (4). pp. 586-595.

Webster, Nicole S., Botté, Emmanuelle S., Soo, Rochelle M., and Whalan, Steve (2011) The larval sponge holobiont exhibits high thermal tolerance. Environmental Microbiology Reports, 3 (6). pp. 756-762.

Ferrari, Maude C.O., McCormick, Mark I., Munday, Philip L., Meekan, Mark G., Dixson, Danielle L., Lonnstedt, Öona, and Chivers, Douglas P. (2011) Putting prey and predator into the CO2 equation – qualitative and quantitative effects of ocean acidification on predator–prey interactions. Ecology Letters, 14 (11). pp. 1143-1148.

Shaddick, K., Burridge, C.P., Jerry, D.R., Schwartz, T.S., Truong, K., Gilligan, D.M., and Beheregaray, L.B. (2011) A hybrid zone and bidirectional introgression between two catadromous species: Australian bass Macquaria novemaculeata and estuary perch Macquaria colonorum. Journal of Fish Biology, 79 (5). pp. 1214-1235.

Goatley, Christopher H.R., and Bellwood, David R. (2011) The roles of dimensionality, canopies and complexity in ecosystem monitoring. PLoS ONE, 6 (11). pp. 1-8.

Foale, Simon, Cohen, Philippa, Januchowski-Hartley, Stephanie, Wenger, Amelia, and Macintyre, Martha (2011) Tenure and taboos: origins and implications for fisheries in the Pacific. Fish and Fisheries, 12 (4). pp. 357-369.

Pollock, F. Joseph, Morris, Pamela J., Willis, Bette L., and Bourne, David G. (2011) The urgent need for robust coral disease diagnostics. PLoS Pathogens, 7 (10). pp. 1-10.

Hoogenboom, M.O., Connolly, S.R., and Anthony, K.R.N. (2011) Biotic and abiotic correlates of tissue quality for common scleractinian corals. Marine Ecology Progress Series, 438. pp. 119-128.

Saenz-Agudelo, Pablo, Jones, Geoffrey P., Thorrold, Simon R., and Planes, Serge (2011) Connectivity dominates larval replenishment in a coastal reef fish metapopulation. Proceedings of the Royal Society of London Series B, Biological Sciences, 278 (1720). pp. 2954-2961.

Kenkel, Carly D., Aglyamova, Galina, Alamaru, Ada, Bhagooli, Ranjeet, Capper, Roxanna, Cunning, Ross, de Villiers, Amanda, Haslun, Joshua A., Hédouin, Laetitia, Keshavmurthy, Shashank, Kuehl, Kristin A., Mahmoud, Huda, McGinty, Elizabeth S., Montoya-Maya, Phanor H., Palmer, Caroline V., Pantile, Raffaella, Sánchez, Juan A., Schils, Tom, Silverstein, Rachel N., Squiers, Logan B., Tang, Pei-Ciao, Goulet, Tamar L., and Matz, Mikhail V. (2011) Development of gene expression markers of acute heat-light stress in reef-building corals of the genus Porites. PLoS ONE, 6 (10). pp. 1-9.

Miller, Penny A., Fitch, Alison J., Gardner, Michael, Hutson, Kate S., and Mair, Graham (2011) Genetic population structure of Yellowtail Kingfish (Seriola lalandi) in temperate Australasian waters inferred from microsatellite markers and mitochondrial DNA. Aquaculture, 319 (3-4). pp. 328-336.

Fox, Rebecca J., and Bellwood, David R. (2011) Unconstrained by the clock? Plasticity of diel activity rhythm in a tropical reef fish, Siganus lineatus. Functional Ecology, 25 (5). pp. 1096-1105.

Lamb, Joleah B., and Willis, Bette L. (2011) Using coral disease prevalence to assess the effects of concentrating tourism activities on offshore reefs in a tropical marine park. Conservation Biology, 25 (5). pp. 1044-1052.

Palmer, C.V., Bythell, J.C., and Willis, B.L. (2011) A comparative study of phenoloxidase activity in diseased and bleached colonies of the coral Acropora millepora. Developmental and Comparative Immunology, 35 (10). pp. 1098-1101.

Brooker, R.M., Munday, P.L., and Jones, G.P. (2011) Coral obligate filefish masquerades as branching coral. Coral Reefs, 30 (3). p. 803.

Young, M.A.L., and Bellwood, D.R. (2011) Diel patterns in sea urchin activity and predation on sea urchins on the Great Barrier Reef. Coral Reefs, 30 (3). pp. 729-736.

Pankhurst, Ned, and Munday, Philip (2011) Effects of climate change on fish reproduction and early life history stages. Marine and Freshwater Research, 62 (9). pp. 1015-1026.

Sato, Y., Bourne, D.G., and Willis, B.L. (2011) Effects of temperature and light on the progression of black band disease on the reef coral, Montipora hispida. Coral Reefs, 30 (3). pp. 753-761.

Konow, Nicolai, and Bellwood, David R. (2011) Evolution of high trophic diversity based on limited functional disparity in the feeding apparatus of marine angelfishes (f. Pomacanthidae). PLoS ONE, 6 (9). pp. 1-11.

Mitchell, Matthew D., McCormick, Mark I., Ferrari, Maud C.O., and Chivers, Douglas P. (2011) Friend or foe? The role of latent inhibition in predator and non-predator labelling by coral reef fishes. Animal Cognition, 14 (5). pp. 707-714.

Tziouveli, Vasiliki, Bastos-Gomez, Giana, and Bellwood, Orpha (2011) Functional morphology of mouthparts and digestive system during larval development of the cleaner shrimp Lysmata amboinensis (de Man, 1888). Journal of Morphology, 272 (9). pp. 1080-1091.

Broderick, D., Ovenden, J.R., Buckworth, R.C., Newman, S.J., Lester, R.J.G., and Welch, D.J. (2011) Genetic population structure of grey mackerel Scomberomorus semifasciatus in northern Australia. Journal of Fish Biology, 79 (3). pp. 633-661.

Lönnstedt, O.M., and McCormick, M.I. (2011) Growth history and intrinsic factors influence risk assessment at a critical life transition for a fish. Coral Reefs, 30 (3). pp. 805-812.

Johansen, J.L., and Jones, G.P. (2011) Increasing ocean temperature reduces the metabolic performance and swimming ability of coral reef damselfishes. Global Change Biology, 17 (9). pp. 2971-2979.

Bay, Line Kolind, Cumbo, Vivian Ruth, Abrego, David, Kool, Johnathan Travis, Ainsworth, Tracy Danielle, and Willis, Bette Lynn (2011) Infection dynamics vary between Symbiodinium types and cell surface treatments during establishment of endosymbiosis with coral larvae. Diversity, 3 (3). pp. 356-374.

Ferrari, Maud C.O., Dixson, Danielle L., Munday, Philip L., McCormick, Mark I., Meekan, Mark G., Sih, Andrew, and Chivers, Douglas P. (2011) Intrageneric variation in antipredator responses of coral reef fishes affected by ocean acidification: implications for climate change projections on marine communities. Global Change Biology, 17 (9). pp. 2980-2986.

Carl, C., Poole, A.J., Vucko, M.J., Williams, M.R., Whalan, S., and de Nys, R. (2011) Optimising settlement assays of pediveligers and plantigrades of Mytilus galloprovincialis. Biofouling, 27 (8). pp. 859-868.

Hisano, Mizue, Connolly, Sean R., and Robbins, William D. (2011) Population growth rates of reef sharks with and without fishing on the Great Barrier Reef: robust estimation with multiple models. PLoS ONE, 6 (9). pp. 1-10.

Gribben, Paul E., Jeffs, Andrew G., de Nys, Rocky, and Steinberg, Peter D. (2011) Relative importance of natural cues and substrate morphology for settlement of the New Zealand Greenshell™ mussel, Perna canaliculus. Aquaculture, 319 (1-2). pp. 240-246.

Eriksen, M.S., Færevik, G., Kittilsen, S., McCormick, M.I., Damsgård, B., Braithwaite, V.A., Braastad, B.O., and Bakken, M. (2011) Stressed mothers - troubled offspring: a study of behavioural maternal effects in farmed Salmo salar. Journal of Fish Biology, 79 (3). pp. 575-586.

Morgan, Jess A.T., Welch, David J., Harry, Alistair V., Street, Raewyn, Broderick, Damien, and Ovenden, Jennifer R. (2011) A mitochondrial species identification assay for Australian blacktip sharks (Carcharhinus tilstoni, C. limbatus and C. amblyrhynchoides) using real-time PCR and high-resolution melt analysis. Molecular Ecology, 11 (5). pp. 813-819.

Cetina-Heredia, Paulina, and Connolly, Sean R. (2011) A simple approximation for larval retention around reefs. Coral Reefs, 30 (3). pp. 593-605.

Price, Ian R. (2011) A taxonomic revision of the marine green algal genera Caulerpa and Caulerpella (Chlorophyta, Caulerpaceae) in northern (tropical and subtropical) Australia. Australian Systematic Botany, 24 (3). pp. 137-213.

Palmer, Caroline V., Traylor-Knowles, Nikki G., Willis, Bette L., and Bythell, John C. (2011) Corals use similar immune cells and wound-healing processes as those of higher organisms. PLoS ONE, 6 (8). pp. 1-11.

Hardy, Christopher M., Adams, Mark, Jerry, Dean R., Court, Leon N., Morgan, Matthew J., and Hartley, Diana M. (2011) DNA barcoding to support conservation: species identification, genetic structure and biogeography of fishes in the Murray-Darling River Basin, Australia. Marine and Freshwater Research, 62 (8). pp. 887-901.

Renfree, Marilyn B., Papenfuss, Anthony T., Deakin, Janine E., Lindsay, James, Heider, Thomas, Belov, Katherine, Rens, Willem, Waters, Paul D., Pharo, Elizabeth A., Shaw, Geoff, Wong, Emily S.W., Lefèvre, Christopher P., Nicholas, Kevin R., Kuroki, Yoko, Wakefield, Matthew J., Zenger, Kyall R., Wang, Chenwei , Ferguson-Smith, Malcolm, Nicholas, Frank W., Hickford, Danielle, Yu, Hongshi, Short, Kirsty R., Siddle, Hannah V., Frankenberg, Stephen R., Chew, Keng Y., Menzies, Brandon R., Stringer, Jessica M., Suzuki, Shunsuke, Hore, Timothy A., Delbridge, Margaret L., Mohammadi, Amir, Schneider, Nanette Y., Hu, Yanqiu, O'Hara, William, Al Nadaf, Shafagh , Wu, Chen, Feng, Zhi-Ping, Cocks, Benjamin G., Wang, Jianghui, Flicek, Paul, Searle, Stephen M.J., Fairley, Susan, Beal, Kathryn, Herrero, Javier, Carone, Dawn M., Suzuki, Yutaka, Kondo, Shinji, Nishida, Yuichiro, Tatsumoto, Shoji, Mandiou, Ion, Hsu, Arthur, McColl, Kaighin A., Lansdell, Benjamin, Weinstock, George, Kuczek, Elizabeth, McGrath, Annette, Wilson, Peter, Men, Artem , Hazar-Rethinam, Mehlika, Hall, Allison, Davis, John, Wood, David, Williams, Sarah, Sundaravadanam, Yogi, Muzny, Donna M., Jhangiani, Shalini N., Lewis, Lora R., Morgan, Margaret B., Okwuonu, Geoffrey O., Ruiz, San J., Santibanez, Jireh, Nazareth, Lynne, Cree, Andrew, Fowler, Gerard, Kovar, Christie L., Dinh, Huyen H., Joshi, Vandita, Jing, Chyn, Lara, Fremiet, Thornton, Rebecca, Chen, Lei, Deng, Jixin, Liu, Yue, Shen, Joshua Y., Song, Xing-Zhi, Edson, Janette, Troon, Carmen, Thomas, Daniel, Stephens, Amber, Yapa, Lankesha, Levchenko, Tanya, Gibbs, Richard A., Cooper, Desmond W., Speed, Terence P., Fujiyama, Asao, Sugano, Sumio, Graves, Jennifer A.M., O'Neill, Rachel J., Pask, Andrew J., Forrest, Susan M., Toyoda, Atsushi, Sakaki, Yoshiyuki, and Worley, Kim C. (2011) Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biology, 12 (8). pp. 1-25.

Wang, Chenwei, Deakin, Janine E., Rens, Willem, Zenger, Kyall R., Belov, Katherine, Marshall Graves, Jennifer A., and Nicholas, Frank W. (2011) A first-generation integrated tammar wallaby map and its use in creating a tammar wallaby first-generation virtual genome map. BMC Genomics, 12. pp. 1-12.

Wang, Chenwei, Webley, Lee, Wei, Ke-jun, Wakefield, Matthew J., Patel, Hardip R., Deakin, Janine E., Alsop, Amber, Marshall Graves, Jennifer A., Cooper, Desmond W., Nicholas, Frank W., and Zenger, Kyall R. (2011) A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii). BMC Genetics, 12. pp. 1-16.

De Santis, Christian, Wade, Nicholas M., Jerry, Dean R., Preston, Nigel P., Glencross, Brett D., and Sellars, Melony J. (2011) Growing backwards: an inverted role for the shrimp ortholog of vertebrate myostatin and GDF11. Journal of Experimental Biology, 214 (16). pp. 2671-2677.

Lönnstedt, Oona M., and McCormick, Mark I. (2011) Chemical alarm cues inform prey of predation threat: the importance of ontogeny and concentration in a coral reef fish. Animal Behaviour, 82 (2). pp. 213-218.

Moorhead, Jonathan A., and Zeng, Chaoshu (2011) Breeding of the forktail blenny Meiacanthus atrodorsalis: broodstock management and larval rearing. Aquaculture, 318 (1-2). pp. 248-252.

Romano, Nicholas, and Zeng, Chaoshu (2011) Importance of balanced Na+/K+ ratios for blue swimmer crabs, Portunus pelagicus, to cope with elevated ammonia-N and differences between in vitro and in vivo gill Na+/K+-ATPase responses. Aquaculture, 318 (1-2). pp. 154-161.

Ovenden, Jennifer R., Morgan, Jess A.T., Street, Raewyn, Tobin, Andrew, Simpfendorfer, Colin, Macbeth, William, and Welch, David (2011) Negligible evidence for regional genetic population structure for two shark species Rhizoprionodon acutus (Rüppell, 1837) and Sphyrna lewini (Griffith & Smith, 1834) with contrasting biology. Marine Biology, 158 (7). pp. 1497-1509.

Cripps, Ingrid, Munday, Philip L., and McCormick, Mark I. (2011) Ocean acidification affects prey detection by a predatory reef fish. PLoS One, 6 (7). pp. 1-7.

Todd, Erica, Blair, David, Hamann, Mark, and Jerry, Dean (2011) Twenty-nine microsatellite markers for two Australian freshwater turtles, Elseya albagula and Emydura macquarii krefftii: development from 454-sequence data and utility in related taxa. Conservation Genetics Resources, 3 (3). pp. 449-456.

Beukers-Stewart, B.D., Beukers-Stewart, J.S, and Jones, G.P. (2011) Behavioural and developmental responses of predatory coral reef fish to variation in the abundance of prey. Coral Reefs, 30 (3). pp. 855-864.

Leis, Jeffrey M., Van Herwerden, Lynne, and Patterson, Heather (2011) Estimating connectivity in marine fish populations: what works best? In: Gibson, R.N., Atkinson, R.J.A., and Gordon, J.D.M., (eds.) Oceanography and Marine Biology: An Annual Review. Oceanography and Marine Biology: An Annual Review, 49 . CRC Press, Boca Raton, FL, USA, pp. 193-234.

Stella, Jessica S., Pratchett, Morgan S., Hutchings, Pat A., and Jones, Geoffrey P. (2011) Coral-associated invertebrates: diversity, ecology importance and vulnerability to disturbance. Oceanography and Marine Biology: an annual review, 49. pp. 43-104.

McGinty, Erin L., Zenger, Kyall R., Taylor, Joseph U.U., Evans, Brad S., and Jerry, Dean R. (2011) Diagnostic genetic markers unravel the interplay between host and donor oyster contribution in cultured pearl formation. Aquaculture, 316 (1-4). pp. 20-24.

Bellwood, D.R., and Choat, J.H. (2011) Dangerous demographics: the lack of juvenile humphead parrotfishes Bolbometopon muricatum on the Great Barrier Reef. Coral Reefs, 30 (2). pp. 549-554.

Harry, Alastair V., Tobin, Andrew J., Simpfendorfer, Colin A., Welch, David J., Mapleston, Amos, White, Jimmy, Williams, Ashley J., and Stapley, Jason (2011) Evaluating catch and mitigating risk in a multispecies, tropical, inshore shark fishery within the Great Barrier Reef World Heritage Area. Marine and Freshwater Research, 62 (6). pp. 710-721.

Grutter, Alexandra S., Crean, Angela J., Curtis, Lynda M., Kuris, Armand M., Warner, Robert R., and McCormick, Mark I. (2011) Indirect effects of an ectoparasite reduce successful establishment of a damselfish at settlement. Functional Ecology, 25 (3). pp. 586-594.

Abdul Wahab, M.A., De Nys, R., and Whalan, S. (2011) Larval behaviour and settlement cues of a brooding coral reef sponge. Coral Reefs, 30 (2). pp. 451-460.

Horne, John B., Momigliano, Paolo, Welch, David J., Newman, Stephen J., and van Herwerden, Lynne (2011) Limited ecological population connectivity suggests low demands on self-recruitment in a tropical inshore marine fish (Eleutheronema tetradactylum: Polynemidae). Molecular Ecology, 20 (11). pp. 2291-2306.

Ceccarelli, Daniela, Beger, Maria, Kospartov, Marie, Richards, Zoe, and Birrell, Chico (2011) Population trends of remote invertebrate resources in a marine reserve: trochus and holothurians at Ashmore Reef. Pacific Conservation Biology, 17 (2). pp. 132-140.

Karlson, Ronald H., Connolly, Sean R., and Hughes, Terence P. (2011) Spatial variance in abundance and occupancy of corals across broad geographic scales. Ecology, 92 (6). pp. 1282-1291.

Bonaldo, R.M., and Bellwood, D.R. (2011) Spatial variation in the effects of grazing on epilithic algal turfs on the Great Barrier Reef, Australia. Coral Reefs, 30 (2). pp. 381-390.

Fraser, M.R., and de Nys, R. (2011) A quantitative determination of deformities in barramundi (Lates calcarifer; Bloch) fed a vitamin deficient diet. Aquaculture Nutrition, 17 (3). pp. 235-243.

Beattie, Andrew J., Hay, Mark, Magnusson, Bill, de Nys, Rocky, Smeathers, James, and Vincent, Julian F.V. (2011) Ecology and bioprospecting. Austral Ecology, 36 (3). pp. 341-356.

Barnett, Adam, Abrantes, Kátya G., Stevens, John D., and Semmens, Jayson M. (2011) Site fidelity and sex-specific migration in a mobile apex predator: implications for conservation and ecosystem dynamics. Animal Behaviour, 81 (5). pp. 1039-1048.

Miller, David A., Choat, John Howard, Clements, Kendall D., and Angert, Esther R. (2011) The spoIIE homolog of Epulopiscium sp. type B is expressed early in intracellular offspring development. Journal of Bacteriology, 193 (10). pp. 2642-2646.

Donelson, Jennifer M., Munday, Philip, Mccormick, Mark I., and Nilsson, Göran E. (2011) Acclimation to predicted ocean warming through developmental plasticity in a tropical reef fish. Global Change Biology, 17 (4). pp. 1712-1719.

Webster, Nicole S., Cobb, Rose E., Soo, Rochelle, Anthony, Shelley L., Battershill, Christopher N., Whalan, Stephen, and Evans-Illidge, Elizabeth (2011) Bacterial community dynamics in the marine sponge Rhopaloeides odorabile under in situ and ex situ cultivation. Marine Biotechnology, 13 (2). pp. 296-304.

Le Vay, Lewis, Shelley, Colin, Zeng, Chaoshu, and Sorgeloos, Patrick (2011) International symposium on aquaculture, biology and management of commercially important crabs, Shanghai (China), 8–11 November 2009 (ISABMC-2009). Aquaculture International, 19 (2). pp. 215-216.

De Santis, Christian, Smith-Keune, Carolyn, and Jerry, Dean R. (2011) Normalizing RT-qPCR data: are we getting the right answers? An appraisal of normalization approaches and internal reference genes from a case study in the Finfish Lates calcarifer. Marine Biotechnology, 13 (2). pp. 170-180.

Dickens, Luke C., Goatley, Christopher H.R., Tanner, Jennifer K., and Bellwood, David R. (2011) Quantifying relative diver effects in underwater visual censuses. PLoS One, 6 (4). pp. 1-8.

De Santis, C., and Jerry, D.R. (2011) Differential tissue-regulation of myostatin genes in the teleost fish Lates calcarifer in response to fasting. Evidence for functional differentiation. Molecular and Cellular Endocrinology, 335 (2). 158-165 .

Bennett, S., and Bellwood, D.R. (2011) Latitudinal variation in macroalgal consumption by fishes on the Great Barrier Reef. Marine Ecology Progress Series, 426. pp. 241-252.

Ceccarelli, D.M., Jones, G.P, and McCook, L.J. (2011) Interactions between herbivorous fish guilds and their influence on algal succession on a coastal coral reef. Journal of Experimental Marine Biology and Ecology, 399 (1). pp. 60-67.

Kingsford, Michael, Smith, Felicity, and Flood, M.J. (2011) Growth and pelagic larval duration of presettlement and newly settled neon damselfish, Pomacentrus coelestis, at multiple spatial scales. Coral Reefs, 30 (1). pp. 203-214.

Bonaldo, R.M., and Bellwood, D.R. (2011) Parrotfish predation on massive Porites on the Great Barrier Reef. Coral Reefs, 30 (1). pp. 259-269.

Trip, E.D.L., Clements, K.D., Raubenheimer, D., and Choat, J.H. (2011) Reproductive biology of an odacine labrid, Odax pullus. Journal of Fish Biology, 78 (3). pp. 741-761.

Holmes, Thomas H., and McCormick, Mark I. (2011) Response across a gradient: behavioural reactions of newly settled fish to predation cues. Animal Behaviour, 81 (3). pp. 543-550.

Moore, B.R., Stapley, J., Allsop, Q., Newman, S.J., Ballagh, A., Welch, D.J., and Lester, R.J.G. (2011) Stock structure of blue threadfin Eleutheronema tetradactylum across northern Australia, as indicated by parasites. Journal of Fish Biology, 78 (3). pp. 923-936.

Hoey, Andrew S., and Bellwood, David R. (2011) Suppression of herbivory by macroalgal density: a critical feedback on coral reefs? Ecology Letters, 14 (3). pp. 267-273.

Aeby, Greta S., Williams, Gareth J., Franklin, Erik C., Haapkyla, Jessica, Harvell, C. Drew, Neale, Stephen, Page, Cathie A., Raymundo, Laurie, Vargas-Ángel, Bernardo, Willis, Bette L., Work, Thierry M., and Davy, Simon K. (2011) Growth anomalies on the coral genera Acropora and Porites are strongly associated with host density and human population size across the Indo-Pacific. PLoS ONE, 6 (2). pp. 1-9.

Bannister, Raymond, Hoogenboom, Mia, Anthony, Kenneth R. N., Battershill, Chris, Whalan, Stephen, Webster, Nicole, and De Nys, Rocky (2011) Incongruence between the distribution of a common coral reef sponge and photosynthesis. Marine Ecology Progress Series, 423. pp. 95-100.

Munday, Philip L., Gagliano, Monica, Donelson, Jennifer M., Dixson, Danielle, and Thorrold, Simon (2011) Ocean acidification does not affect the early life history development of a tropical marine fish. Marine Ecology Progress Series, 423. pp. 211-221.

Haapkylä, Jessica, Unsworth, Richard K.F., Flavell, Mike, Bourne, David G., Schaffelke, Britta, and Willis, Bette L. (2011) Seasonal rainfall and runoff promote coral disease on an inshore reef. PLoS ONE, 6 (2). pp. 1-10.

Shaddick, Kim, Gilligan, Dean M., Burridge, Christopher P., Jerry, Dean R., Truong, Kiet, and Beheregaray, Luciano B. (2011) Historic divergence with contemporary connectivity in a catadromous fish, the estuary perch (Macquaria colonorum). Canadian Journal of Fisheries and Aquatic Sciences, 68 (2). pp. 304-318.

Wu, Xugan, Wang, Zongkai, Cheng, Yong Xu, Zeng, Chaoshu, Yang, Xiaozhen, and Lu, Jianfeng (2011) Effects of dietary phospholipids and highly unsaturated fatty acids on the precocity, survival, growth and hepatic lipid composition of juvenile Chinese mitten crab, Eriocheir sinensis (H. Milne-Edwards). Aquaculture Research, 42 (3). pp. 457-468.

Hasbi, Ghitarina, de Nys, Rocky, Burns, Kathryn, Whalan, Stephen, and Dunlap, Walter C. (2011) Hepatic coenzyme Q redox balance of fishes as a potential bioindicator of environmental contamination by polycyclic aromatic hydrocarbons. Biology Letters, 7 (1). pp. 123-126.

Liu, Zhijun, Wu, Xugan, Cheng, Yongxu, Zeng, Chaoshu, and Yang, Xiaozhen (2011) Ovarian re-maturation following the first spawning in the Chinese mitten crab, Eriocheir sinensis (H. Milne-Edwards). Aquaculture Research, 42 (3). pp. 417-426.

Bonaldo, R.M., Krajewski, P.J., and Bellwood, D.R. (2011) Relative impact of parrotfish grazing scars on massive Porites corals at Lizard Island, Great Barrier Reef. Marine Ecology Progress Series, 423. pp. 223-233.

Veilleux, Heather D., van Herwerden, Lynne, Evans, Richard D. , Travers, Michael J. , and Newman, Stephen J. (2011) Strong genetic subdivision generates high genetic variability among eastern and western Australian populations of Lutjanus carponotatus (Richardson). Fisheries Research, 108 (1). pp. 74-80.

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Horne, John B., Van Herwerden, Lynne, and Choat, J. Howard (2011) Just because the shoe fits doesn't mean you should wear it: complex evolutionary patterns in the reef fish genus Naso. In: Abstracts from Society for Integrative and Comparative Biology Annual Meeting, p. 1. From: Society for Integrative and Comparative Biology Annual Meeting, 3-7 January 2011, Salt Lake City, UT, USA.

Bird, Michael I., Wurster, Christopher M., de Paula Silva, Pedro H., Bass, Adrian M., and de Nys, Rocky (2011) Algal biochar: production and properties. Bioresource Technology, 102 (2). 1886- 1891.

Mitchell, Matthew D., McCormick, Mark I., Ferrari, Maud C.O., and Chivers, Douglas P. (2011) Coral reef fish rapidly learn to identify multiple unknown predators upon recruitment to the reef. PLoS ONE, 6 (1). pp. 1-6.

Russ, Garry R., and Alcala, Angel C. (2011) Enhanced biodiversity beyond marine reserve boundaries: the cup spillith over. Ecological Applications, 21 (1). pp. 241-250.

Scardino, Andrew J., and de Nys, Rocky (2011) Mini review: biomimetic models and bioinspired surfaces for fouling control. Biofouling, 27 (1). pp. 73-86.

Hutson, K.S., Brock, E.L., and Steer, M.A. (2011) Spatial variation in parasite abundance: evidence of geographical population structuring in southern garfish Hyporhamphus melanochir. Journal of Fish Biology, 78 (1). pp. 166-182.

Catalano, Sarah R., Hutson, Kate S., Ratcliff, Rodney M., and Whittington, Ian D. (2011) The value of host and parasite identification for arripid fish. Marine and Freshwater Research, 62 (1). pp. 72-82.

Bonin, Mary C., Almany, Glenn R., and Jones, Geoffrey P. (2011) Contrasting effects of habitat loss and fragmentation on coral-associated reef fishes. Ecology, 92 (7). pp. 1503-1512.

Saenz-Agudelo, P., Jones, G.P., Thorrold, S.R., and Planes, S. (2011) Detrimental effects of host anemone bleaching on anemonefish populations. Coral Reefs, 30 (2). pp. 497-506.

Januchowski-Hartley, Stephanie, VanDerWal, Jeremy, and Sydes, Damon (2011) Effective control of aquatic invasive species in tropical Australia. Environmental Management, 48 (3). pp. 568-576.

Ballagh, D.A., Pankhurst, P.M., and Fielder, D.S. (2011) Embryonic development of mulloway, Argyrosomus japonicus, and egg surface disinfection using ozone. Aquaculture, 318 (3-4). pp. 475-478.

Connolly, Sean R., and Dornelas, Maria (2011) Fitting and empirical evaluation of models for species abundance distributions. In: Magurran, Anne E., and McGill, Brian J., (eds.) Biological diversity: frontiers in measurement and assessment. Oxford University Press, Oxford, UK, pp. 123-140.

Miller, Emily J., Eldridge, Mark D.B., Morris, Keith D., Zenger, Kyall R., and Herbert, Catherine A. (2011) Genetic consequences of isolation: island tammar wallaby (Macropus eugenii) populations and the conservation of threatened species. Conservation Genetics, 12 (6). pp. 1619-1631.

Miller-Sims, Vanessa C., Atema, Jelle, Gerlach, Gabriele, and Kingsford, Michael (2011) How stable are the reef odor preferences of settling reef fish larvae? Marine and Freshwater Behaviour and Physiology, 44 (3). pp. 133-141.

Ballagh, Aaron C., Welch, David, Williams, Ashley J., Mapleston, Amos, Tobin, Andrew, and Marton, Nicholas (2011) Integrating methods for determining length-at-age to improve growth estimates for two large scombrids. Fishery Bulletin, 109 (1). pp. 90-100.

Abrantes, Kátya G., and Barnett, Adam (2011) Intrapopulation variations in diet and habitat use in a marine apex predator, the broadnose sevengill shark Notorynchus cepedianus. Marine Ecology Progress Series, 442. pp. 133-148.

Krajewski, João Paulo, Floeter, Sergio R., Jones, Geoffrey P., and Leite, Fosca P.P (2011) Patterns of variation in behaviour within and among reef fish species on an isolated tropical island: influence of exposure and substratum. Journal of the Marine Biological Association of the United Kingdom, 91 (Special Issue 6). pp. 1359-1368.

Gaither, Michelle R., Bowen, Brian W., Bordenave, Tiane-Rae, Rocha, Luiz A., Newman, Stephen J., Gomez, Juan A., van Herwerden, Lynne, and Craig, Matthew T. (2011) Phylogeography of the reef fish Cephalopholis argus (Epinephelidae) indicates Pleistocene isolation across the indo-pacific barrier with contemporary overlap in the coral triangle. BMC Evolutionary Biology, 11. pp. 1-15.

Maynard, J.A., Anthony, K.R.N., Harvell, C.D., Burgman, M.A., Beeden, R., Sweatman, H., Heron, S.F., Lamb, J.B., and Willis, B.L. (2011) Predicting outbreaks of a climate-driven coral disease in the Great Barrier Reef. Coral Reefs, 30 (2). pp. 485-495.

Pandolfi, John M., Connolly, Sean R., Marshall, Dustin J., and Cohen, Anne L. (2011) Projecting coral reef futures under global warming and ocean acidification. Science, 333 (6041). pp. 418-422.

Trip, E.D.L., Raubenheimer, D., Clements, K.D., and Choat, J.H. (2011) Reproductive demography of a temperate protogynous and herbivorous fish, Odax pullus (Labridae, Odacini). Marine and Freshwater Research, 62 (2). pp. 176-186.

Milione, Michael, and Southgate, Paul (2011) Seasonal changes in recruitment of Pteria penguin in North Queensland, Australia. Journal of Shellfish Research, 30 (1). pp. 89-94.

Chong-Seng, K.M., Cole, A.J., Pratchett, M.S., and Willis, B.L. (2011) Selective feeding by coral reef fishes on coral lesions associated with brown band and black band disease. Coral Reefs, 30 (2). pp. 473-481.

Hughes, T.P., Bellwood, D.R., Baird, A.H., Brodie, J., Bruno, J.F., and Pandolfi, J.M. (2011) Shifting base-lines, declining coral cover, and the erosion of reef resilience: comment on Sweatman et al. (2011). Coral Reefs, 30 (3). pp. 653-660.

Clode, P.L., Lema, K., Saunders, M., and Weiner, S. (2011) Skeletal mineralogy of newly settling Acropora millepora (Scleractinia) coral recruits. Coral Reefs, 30 (1). pp. 1-8.

Moore, B.R., Welch, D.J., and Simpfendorfer, C.A. (2011) Spatial patterns in the demography of a large estuarine teleost: king threadfin, Polydactylus macrochir. Marine and Freshwater Research, 62 (8). pp. 937-951.

Newman, S.J., Pember, M.B., Rome, B.M., Mitsopoulos, G.E.A., Skepper, C.L., Allsop, Q., Saunders, T., Ballagh, A.C., van Herwerden, L., Garrett, R.N., Gribble, N.A., Stapley, J.M., Meeuwig, J.J., Moore, B.R., and Welch, D.J. (2011) Stock structure of blue threadfin Eleutheronema tetradactylum across northern Australia as inferred from stable isotopes in sagittal otolith carbonate. Fisheries Management and Ecology, 18 (3). pp. 246-257.

Welch, D.J., Ovenden, J., Simpfendorfer, C., Tobin, A., Morgan, J.A.T., Street, R., White, J., Harry, A., Schroeder, R., and Macbeth, W.G. (2011) Stock structure of exploited shark species in north-eastern Australia. Report to the Fisheries Research & Development Corporation, Project 2007/035. Fishing & Fisheries Research Centre Technical Report No. 12. Report. Fisheries Research and Development Corporation, James Cook University, Townsville, QLD, Australia.

Lefèvre, Carine D., and Bellwood, David R. (2011) Temporal variation in coral reef ecosystem processes: herbivory of macroalgae by fishes. Marine Ecology Progress Series, 422. pp. 239-251.

Gehrke, Peter C., Sheaves, Marcus J., Terry, James P., Boseto, David T., Ellison, Joanna C., Figa, Boga S., and Wani, Jacob (2011) Vulnerability of freshwater and estuarine fish habitats in the tropical Pacific to climate change. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, Noumea, New Caledonia, pp. 369-432.

Gehrke, Peter C., Sheaves, Marcus J., Boseto, David T., Figa, Boga S., and Wani, Jacob (2011) Vulnerability of freshwater and estuarine fisheries in the tropical Pacific to climate change. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, Noumea, New Caledonia, pp. 577-646.

Waycott, Michelle, McKenzie, Len, Mellors, Jane E., Ellison, Joanna C., Sheaves, Marcus T., Collier, Catherine, Schwarz, Anne-Maree, Webb, Arthur, Johnson, Johanna E., and Payri, Claude E. (2011) Vulnerability of mangroves, seagrasses and intertidal flats in the tropical Pacific to climate change. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, Noumea, New Caledonia, pp. 297-368.

Paoli, Gary D., Yaap, Betsy, Wells, Phillip L., and Sileuw, Aisyah (2010) CSR, oil palm and the RSPO: translating boardroom philosophy into conservation action on the ground. Tropical Conservation Science, 3 (4). pp. 438-446.

Newman, Stephen J., Allsop, Quentin, Ballagh, Aaron C., Garrett, Rod N., Gribble, Neil, Meeuwig, Jessica J., Mitsopoulos, Gabby E.A., Moore, Bradley R., Pember, Matthew B., Rome, Ben M., Saunders, Thor, Skepper, Craig L., Stapley, Jason M., van Herwerden, Lynne, and Welch, David J. (2010) Variation in stable isotope (δ18O and δ13C) signatures in the sagittal otolith carbonate of king threadfin, Polydactylus macrochir across northern Australia reveals multifaceted stock structure. Journal of Experimental Marine Biology and Ecology, 396 (1). pp. 53-60.

Done, T.J., DeVantier, L.M., Turak, E., Fisk, D.A., Wakeford, M., and van Woesik, R. (2010) Coral growth on three reefs: development of recovery benchmarks using a space for time approach. Coral Reefs, 29 (4). pp. 815-833.

Slater, M.J., Carton, A.G., and Jeffs, A.G. (2010) Highly localised distribution patterns of juvenile sea cucumber Australostichopus mollis. New Zealand Journal of Marine and Freshwater Research, 44 (4). pp. 201-216.

Weeks, Rebecca, Russ, Garry R., Bucol, Abner A., and Alcala, Angel C. (2010) Incorporating local tenure in the systematic design of marine protected area networks. Conservation Letters, 3 (6). pp. 445-453.

Berumen, M. L, Walsh, H.J., Raventos, N., Planes, S., Jones, G.P., Starczak, V., and Thorrold, S.R. (2010) Otolith geochemistry does not reflect dispersal history of clownfish larvae. Coral Reefs, 29 (4). pp. 883-891.

Abesamis, R.A., and Russ, G.R. (2010) Patterns of recruitment of coral reef fishes in a monsoonal environment. Coral Reefs, 29 (4). pp. 911-921.

Gardiner, N.M., and Jones, G.P. (2010) Synergistic effects of habitat preference and gregarious behaviour on habitat use in coral reef cardinalfish. Coral Reefs, 29 (4). pp. 845-856.

Magnusson, Marie, Heimann, Kirsten, Quayle, Pamela, and Negri, Andrew P. (2010) Additive toxicity of herbicide mixtures and comparative sensitivity of tropical benthic microalgae. Marine Pollution Bulletin, 60 (11). pp. 1978-1987.

McCook, Laurence, Ayling, Anthony, Cappo, Mike, Choat, J. Howard, Evans, Richard D., De Freitas, Debora M., Heupel, Michelle, Hughes, Terry P., Jones, Geoffrey P., Mapstone, Bruce, Marsh, Helene, Mills, Morena, Molloy, Fergus J., Pitcher, C. Roland, Pressey, Robert L., Russ, Garry R., Sutton, Stephen, Sweatman, Hugh, Tobin, Renae, Wachenfeld, David R., and Williamson, David H. (2010) Adaptive management of the Great Barrier Reef: A globally significant demonstration of the benefits of networks of marine reserves. Proceedings of the National Academy of Sciences of the United States of America, 107 (43). 18278- 18285.

Babcock, R.C., Shears, N.T., Alcala, A.C., Barrett, N.S., Edgar, G.J., Lafferty, K.D., McClanahan, T.R., and Russ, G.R. (2010) Decadal trends in marine reserves reveal differential rates of change in direct and indirect effects. Proceedings of the National Academy of Sciences of the United States of America, 107 (43). pp. 18256-18261.

Huerlimann, Roger, De Nys, Rocky, and Heimann, Kirsten (2010) Growth, lipid content, productivity, and fatty acid composition of tropical microalgae for scale-up production. Biotechnology and Bioengineering, 107 (2). pp. 245-257.

Gardiner, Naomi M., Munday, Philip L., and Nilsson, Göran E. (2010) Counter-gradient variation in respiratory performance of coral reef fishes at elevated temperatures. PLoS ONE, 5 (10). pp. 1-13.

Welch, D.J., Ballagh, A., Newman, S.J., Lester, R.J., Moore, B., van Herwerden, L., Horne, J., Allsop, Q., Saunders, T., Stapley, J., and Gribble, N.A. (2010) Defining the Stock Structure of Northern Australia's Threadfin Salmon Species. Report. James Cook University, Townsville, QLD, Australia.

Price, Samantha A., Wainwright, Peter C., Bellwood, David R., Kazancioglu, Erem, Collar, David C., and Near, Thomas J. (2010) Functional innovations and morphological diversification in parrotfish. Evolution, 64 (10). pp. 3057-3068.

Camus, Thomas, and Zeng, Chaoshu (2010) Roles of microalgae on total egg production over female lifespan and egg incubation time, naupliar and copepodite survival, sex ratio and female life expectancy of the copepod Bestiolina similis. Aquaculture Research, 41 (11). pp. 1717-1726.

Goatley, Christopher H.R., and Bellwood, David R. (2010) Biologically mediated sediment fluxes on coral reefs: sediment removal and off-reef transportation by the surgeonfish Ctenochaetus striatus. Marine Ecology Progress Series, 415. pp. 237-245.

Booth, Mark A., Allan, Geoff L., and Pirozzi, Igor (2010) Estimation of digestible protein and energy requirements of yellowtail kingfish Seriola lalandi using a factorial approach. Aquaculture, 307 (3-4). pp. 247-259.

Johansson, C.L., Bellwood, D.R., and Depczynski, M. (2010) Sea urchins, macroalgae and coral reef decline: a functional evaluation of an intact reef system, Ningaloo, Western Australia. Marine Ecology Progress Series, 414. pp. 65-74.

Carton, Alexander G., and Vaughan, Melanie R. (2010) Behavioural and anatomical measures of visual acuity in first-feeding Yellowtail Kingfish (Seriola lalandi)larvae. Environmental Biology of Fishes, 89 (1). pp. 3-10.

Walker, Stefan P.W., Thibaut, Loïc, and McCormick, Mark I. (2010) Density-dependent sex ratio adjustment and the allee effect: a model and a test using a sex-changing fish. American Naturalist, 176 (3). pp. 312-321.

Luter, Heidi M., Whalan, Steve, and Webster, Nicole S. (2010) Exploring the role of microorganisms in the disease-like syndrome affecting the sponge Ianthella basta. Applied and Environmental Microbiology, 76 (17). pp. 5736-5744.

Robinson, Nicholas Andrew, Schipp, Glenn, Bosmans, Jérôme, and Jerry, Dean Robert (2010) Modelling selective breeding in protandrous, batch-reared Asian sea bass (Lates calcarifer, Bloch) using walkback selection. Aquaculture Research, 41 (10). e643-e655.

Almany, G.R., Hamilton, R.J., Williamson, D.H., Evans, R.D., Jones, G.P., Matawai, M., Potuku, T., Rhodes, K.L., Russ, G.R., and Sawynock, B. (2010) Research partnerships with local communities: two case studies from Papua New Guinea and Australia. Coral Reefs, 29 (3). pp. 567-576.

Slater, Matthew J., and Carton, Alexander G. (2010) Sea cucumber habitat differentiation and site retention as determined by intraspecific stable isotope variation. Aquaculture Research, 41 (10). pp. 695-702.

Ballagh, Debra A., Fielder, D. Stewart, and Pankhurst, Patricia M. (2010) Weaning requirements of larval mulloway, Argyrosomus japonicus. Aquaculture Research, 41 (10). e493-e504.

Heron, Scott F., Willis, Bette L., Skirving, William J., Eakin, C. Mark, Page, Cathie A., and Miller, Ian R. (2010) Summer hot snaps and winter conditions: modelling white syndrome outbreaks on Great Barrier Reef corals. PLoS ONE, 5 (8). pp. 1-11.

Russ, Garry R., and Alcala, Angel C. (2010) Decadal-scale rebuilding of predator biomass in Philippine marine reserves. Oecologia, 163 (4). pp. 1103-1106.

Webster, Nicole S., Taylor, Michael W., Behnam, Faris, Lücker, Sebastian, Rattei, Thomas, Whalan, Stephen, Horn, Matthias, and Wagner, Michael (2010) Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts. Environmental Microbiology, 12 (8). pp. 2070-2082.

Pollock, F. Joseph, Morris, Pamela J., Willis, Bette L., and Bourne, David G. (2010) Detection and quantification of the coral pathogen vibrio coralliilyticus by real-time PCR with TaqMan fluorescent probes. Applied and Environmental Microbiology, 76 (15). pp. 5282-5286.

Winters, Kate L., van Herwerden, Lynne, Choat, J. Howard, and Robertson, D.R. (2010) Phylogeography of the Indo-Pacific parrotfish Scarus psittacus: isolation generates distinctive peripheral populations in two oceans. Marine Biology, 157 (8). pp. 1679-1691.

Gagliano, Monica, McCormick, Mark I., Moore, James A., and Depczynski, Martial (2010) The basics of acidification: baseline variability of pH on Australian coral reefs. Marine Biology, 157 (8). pp. 1849-1856.

Alva-Campbell, Yvette, Floeter, Sergio R., Robertson, D. Ross, Bellwood, David R., and Bernardi, Giacomo (2010) Molecular phylogenetics and evolution of Holacanthus angelfishes (Pomacanthidae). Molecular Phylogenetics and Evolution, 56 (1). pp. 456-461.

Lind, Curtis E., Evans, Brad S., Taylor, Joseph J.U., and Jerry, Dean R. (2010) The consequences of differential family survival rates and equalizing maternal contributions on the effective population size (Ne) of cultured silver-lipped pearl oysters, Pinctada maxima. Aquaculture Research, 41 (8). pp. 1229-1242.

Hobbs, Jean-paul, and Van Herwerden, Lynne (2010) Evolutionary novelty at range edges for coral reef organisms. Science, 328 (5985). p. 1558.

Kvingedal, Renate, Evans, Brad S., Lind, Curtis E., Taylor, Joseph J.U., Dupont-Nivet, Mathilde, and Jerry, Dean R. (2010) Population and family growth response to different rearing location, heritability estimates and genotype×environment interaction in the silver-lip pearl oyster (Pinctada maxima). Aquaculture, 304 (1-4). pp. 1-6.

Penin, Lucie, Michonneau, François, Baird, Andrew H., Connolly, Sean R., Pratchett, Morgan S., Kayal, Mohsen, and Adjeroud, Mehdi (2010) Early post-settlement mortality and the structure of coral assemblages. Marine Ecology Progress Series, 408. pp. 55-64.

Bennett, S., Vergés, A., and Bellwood, D.R. (2010) Branching coral as a macroalgal refuge in a marginal coral reef system. Coral Reefs, 29 (2). pp. 471-480.

Hoey, A.S., and Bellwood, D.R. (2010) Cross-shelf variation in browsing intensity on the Great Barrier Reef. Coral Reefs, 29 (2). pp. 499-508.

Palmer, Caroline V., Bythell, John C., and Willis, Bette L. (2010) Levels of immunity parameters underpin bleaching and disease susceptibility of reef corals. FASEB Journal, 24 (6). pp. 1935-1946.

Jones, D.B., Jerry, D.R., McCormick, M.I., and Bay, L.K. (2010) The population genetic structure of a common tropical damselfish on the Great Barrier Reef and eastern Papua New Guinea. Coral Reefs, 29 (2). pp. 455-467.

McCormick, Mark I., and Meekan, Mark G. (2010) The importance of attitude: the influence of behaviour on survival at an ontogenetic boundary. Marine Ecology Progress Series, 407. pp. 173-185.

McCormick, Mark I., Ryen, Christopher A., Munday, Philip L., and Walker, Stefan P.W. (2010) Differing mechanisms underlie sexual size-dimorphism in two populations of a sex-changing fish. PLoS ONE, 5 (5). 1- 8.

Sheaves, Marcus, and Johnston, Ross (2010) Implications of spatial variability of fish assemblages for monitoring of Australia’s tropical estuaries. Aquatic Conservation: marine and freshwater ecosystems , 20 (3). pp. 348-356.

Crothers-Stomps, C., Høj, L., Bourne, D.G., Hall, M.R., and Owens, L. (2010) Isolation of lytic bacteriophage against Vibrio harveyi. Journal of Applied Microbiology, 108 (5). pp. 1744-1750.

Wu, Xugan, Cheng, Yongxu, Zeng, Chaoshu, Wang, Chunlin, and Cui, Zhaoxia (2010) Reproductive performance and offspring quality of the first and the second brood of female swimming crab, Portunus Trituberculatus. Aquaculture, 303 (1-4). pp. 94-100.

Littman, Raechel A., Bourne, David G., and Willis, Bette L. (2010) Responses of coral-associated bacterial communities to heat stress differ with Symbiodinium type on the same coral host. Molecular Ecology, 19 (9). pp. 1978-1990.

Lefevre, Carine, and Bellwood, David (2010) Seasonality and dynamics in coral reef macroalgae: variation in condition and susceptibility to herbivory. Marine Biology, 157 (5). pp. 955-965.

Weeks, Rebecca, Russ, Garry R., Bucol, Abner A., and Alcala, Angel C. (2010) Shortcuts for marine conservation planning: the effectiveness of socioeconomic data surrogates. Biological Conservation, 143 (5). pp. 1236-1244.

Williams, Ashley J., Little, L. Richard, Punt, André E., Mapstone, Bruce D., Davies, Campbell R., and Heupel, Michelle R. (2010) Exploring movement patterns of an exploited coral reef fish when tagging data are limited. Marine Ecology Progress Series, 405. pp. 87-99.

Bannister, R.J., Battershill, C.N., and de Nys, R. (2010) Demographic variability and long-term change in a coral reef sponge along a cross-shelf gradient of the Great Barrier Reef. Marine and Freshwater Research, 61 (4). pp. 389-396.

Hobbs, Jean-Paul A., Ayling, Anthony, Choat, J. Howard, Gilligan, Justin J., McDonald, Christian A., Neilson, Joseph, and Newman, Stephen J. (2010) New records of marine fishes illustrate the biogeographic importance of Christmas Island, Indian Ocean. Zootaxa, 2422. pp. 63-68.

Yang, Xiaozhen, Wang, Jinfeng, Fan, Peng, Zhao, Liulan, Cheng, Yongxu, Wu, Xugan, and Zeng, Chaoshu (2010) Survival, growth, sexual maturity and tissue histamine accumulation of the mysis, Neomysis awatschensis and N. japonica Nakazawa, fed histamine supplemented diets. Aquaculture, 302 (3-4). pp. 256-260.

McGinty, Erin L., Evans, Brad S., Taylor, Joseph U.U., and Jerry, Dean R. (2010) Xenografts and pearl production in two pearl oyster species, P. maxima and P. margaritifera: effect on pearl quality and a key to understanding genetic contribution. Aquaculture, 302 (3-4). pp. 175-181.

Pirozzi, Igor, Booth, Mark A., and Allan, Geoff L. (2010) A factorial approach to deriving dietary specifications and daily feed intake for mulloway, Argyrosomus japonicus, based on the requirements for digestible protein and energy. Aquaculture, 302 (3-4). pp. 235-242.

Brown, I., Sumpton, W., McLennan, M., Mayer, D., Campbell, M., Kirkwood, J., Butcher, A., Halliday, I., Mapleston, A., Welch, D., Begg, G.A., and Sawynok, B. (2010) An improved technique for estimating short-term survival of released line-caught fish, and an application comparing barotrauma-relief methods in red emperor (Lutjanus sebae Cuvier 1816). Journal of Experimental Marine Biology and Ecology, 385 (1-2). pp. 1-7.

Aldred, Nick, Scardino, Andrew, Cavaco, Andreia, de Nys, Rocky, and Clare, Anthony S. (2010) Attachment strength is a key factor in the selection of surfaces by barnacle cyprids (Balanus amphitrite) during settlement. Biofouling, 26 (3). pp. 287-299.

Weeks, Rebecca, Russ, Garry R., Alcala, Angel C., and White, Alan T. (2010) Effectiveness of marine protected areas in the Philippines for biodiversity conservation. Conservation Biology, 24 (2). pp. 531-540.

Salomon, Yacov, Connolly, Sean R., and Bode, Lance (2010) Effects of asymmetric dispersal on the coexistence of competing species. Ecology Letters, 13 (4). pp. 432-441.

Aswani, Shankar, and Sabetian, Armagan (2010) Implications of urbanization for artisanal parrotfish fisheries in the Western Solomon Islands. Conservation Biology, 24 (2). pp. 520-530.

Wu, Xugan, Cheng, Yongxu, Zeng, Chaoshu, Wang, Chunlin, and Yang, Xiaozhen (2010) Reproductive performance and offspring quality of wild-caught and pond-reared swimming crab Portunus trituberculatus broodstock. Aquaculture, 301 (1-4). pp. 78-84.

Knip, Danielle M., Heupel, Michelle R., and Simpfendorfer, Colin A. (2010) Sharks in nearshore environments: models, importance, and consequences. Marine Ecology Progress Series, 402. pp. 1-11.

Romano, Nicholas, and Zeng, Chaoshu (2010) Changes to the histological gill structure and haemolymph composition of early blue swimmer crab Portunus pelagicus juveniles during elevated ammonia-N exposure and the post-exposure recovery. Aquaculture Research, 41 (4). pp. 468-480.

Wu, Xuang, Zhou, Bo, Cheng, Yongxu, Zeng, Chaoshu, Wang, Chunlin, and Feng, Lang (2010) Comparison of gender differences in biochemical composition and nutritional value of various edible parts of the blue swimmer crab. Journal of Food Composition and Analysis, 23 (2). pp. 154-159.

Cole, A.J, Pratchett, M.S., and Jones, G.P. (2010) Corallivory in tubelip wrasses: diet, feeding and trophic importance. Journal of Fish Biology, 76 (4). pp. 818-835.

Hoey, A.S., and Bellwood, D.R. (2010) Damselfish territories as a refuge for macroalgae on coral reefs. Coral Reefs, 29 (1). pp. 107-118.

Raina, Jean-Baptiste, Dinsdale, Elizabeth A., Willis, Bette L., and Bourne, David G. (2010) Do the organic sulfur compounds DMSP and DMS drive coral microbial associations? Trends in Microbiology, 18 (3). pp. 101-108.

Romano, Nicholas, and Zeng, Chaoshu (2010) Survival, osmoregulation and ammonia-N excretion of blue swimmer crab, Portunus pelagicus, juveniles exposed to different ammonia-N and salinity combinations. Comparative Biochemistry and Physiology - Part C, 151 (2). pp. 222-228.

Andrés, Mireia, Rotllant, Guiomar, and Zeng, Chaoshu (2010) Survival, development and growth of larvae of the blue swimmer crab, Portunus pelagicus, cultured under different photoperiod conditions. Aquaculture, 300 (1-4). pp. 218-222.

Hobbs, Jean-Paul, and Frisch, Ashley J. (2010) Coral disease in the Indian Ocean: taxonomic susceptibility, spatial distribution and the role of host density on the prevalence of white syndrome. Diseases of Aquatic Organisms, 89 (1). pp. 1-8.

Sumpton, W.D., Brown, I.W., Mayer, D.G., McLennan, M.F., Mapleston, A., Butcher, A.R., Welch, D.J., Kirkwood, J.M., Sawynok, B., and Begg, G.A. (2010) Assessing the effects of line capture and barotrauma relief procedures on post-release survival of key tropical reef fish species in Australia using recreational tagging clubs. Fisheries Management and Ecology, 17 (1). pp. 77-88.

Wong, Marian (2010) Ecological constraints and benefits of philopatry promote group-living in a social but non-cooperatively breeding fish. Proceedings of the Royal Society of London Series B, Biological Sciences, 277 (1680). pp. 353-358.

Wu, X., Chang, G., Cheng, Y., Zeng, C., Southgate, P.C., and Lu, J. (2010) Effects of dietary phospholipid and highly unsaturated fatty acid on the gonadal development, tissue proximate composition, lipid class and fatty acid composition of precocious Chinese mitten crab, Eriocheir sinensis. Aquaculture Nutrition, 16 (1). pp. 25-36.

Bellwood, D.R., Klanten, S., Cowman, P.F., Pratchett, M.S., Konow, N., and Van Herwerden, L. (2010) Evolutionary history of the butterflyfishes (f: Chaetodontidae) and the rise of coral feeding fishes. Journal of Evolutionary Biology, 23 (2). pp. 335-349.

Pollock, F. Joseph, Wilson, Bryan, Johnson, Wesley R., Morris, Pamela J., Willis, Bette L., and Bourne, David G. (2010) Phylogeny of the coral pathogen Vibrio coralliilyticus. Environmental Microbiology Reports, 2 (1). pp. 172-178.

Evans, R.D., Van Herwerden, L., Russ, G.R., and Frisch, A.J. (2010) Strong genetic but not spatial subdivision of two reef fish species targeted by fishers on the Great Barrier Reef. Fisheries Research, 102 (1-2). pp. 16-25.

Sato, Yui, Willis, Bette L., and Bourne, David G. (2010) Successional changes in bacterial communities during the development of black band disease on the reef coral, Montipora hispida. ISME Journal, 4 (2). pp. 203-214.

Masonjones, Heather D., Rose, Emily, McRae, Lori Benson, and Dixson, Danielle (2010) An examination of the population dynamics of syngnathid fishes within Tampa Bay, Florida, USA. Current Zoology, 56 (1). pp. 118-133.

Holmes, Thomas H., and McCormick, Mark I. (2010) Size-selectivity of predatory reef fish on juvenile prey. Marine Ecology Progress Series, 399. pp. 273-283.

Hoey, Andrew, and Bellwood, David (2010) Among-habitat variation in herbivory on Sargassum spp. on a mid-shelf reef in the northern Great Barrier Reef. Marine Biology, 157 (1). pp. 189-200.

Dixson, Danielle L., Munday, Philip L., and Jones, Geoffrey P. (2010) Ocean acidification disrupts the innate ability of fish to detect predator olfactory cues. Ecology Letters, 13 (1). pp. 68-75.

Tobin, A., Schlaff, A., Tobin, R., Penny, A., Ayling, Anthony, Krause, B., Welch, D., Sutton, S., Sawynok, B., Marshall, N., Marshall, P., and Maynard, J. (2010) Adapting to Change: Minimising Uncertainty about the Effects of Rapidly-Changing Environmental Conditions on the Queensland Coral Reef Fin Fish Fishery. Report. Fishing and Fisheries Research Centre, James Cook University, Townsville, Qld, Australia.

Tobin, R.C., Sutton, S.G., Penny, A., Williams, L., Maroske, J., and Nilsson, J. (2010) Baseline Socio-Economic Data for Queensland East Coast Inshore and Rocky Reef Fishery Stakeholders. Part A: Commercial Fishers. Report. Fishing and Fisheries Research Centre, Townsville, QLD. Australia.

Tobin, R.C., Beggs, K., Sutton, S.G., Penny, A., Maroske, J., and Williams, L. (2010) Baseline Socio-Economic Data for Queensland East Coast Inshore and Rocky Reef Fishery Stakeholders. Part B: Charter Fishers. Report. Fishing and Fisheries Research Centre, Townsville, QLD, Australia.

Tobin, R.C., Beggs, K., Sutton, S.G., and Penny, A. (2010) Baseline Socio-Economic Data for Queensland East Coast Inshore and Rocky Reef Fishery Stakeholders. Part C: Recreational Fishers. Report. Fishing and Fisheries Research Centre, Townsville, QLD, Australia.

Tobin, R.C., Beggs, K., Sutton, S.G., and Penny, A. (2010) Baseline Socio-Economic Data for Queensland East Coast Inshore and Rocky Reef Fishery Stakeholders. Part D: Seafood Consumers. Report. Fishing and Fisheries Research Centre, Townsville, QLD, Australia.

Meekan, Mark G., von Kuerthy, Corinna, Mccormick, Mark I., and Radford, Ben (2010) Behavioural mediation of the costs and benefits of fast growth in a marine fish. Animal Behaviour, 79 (4). pp. 803-809.

Cvitanovic, C., and Hoey, A.S. (2010) Benthic community composition influences within-habitat variation in macroalgal browsing on the Great Barrier Reef. Marine and Freshwater Research, 61 (9). pp. 999-1005.

Wilson, S.K., Adjeroud, M., Bellwood, D.R., Berumen, M.L., Booth, D., Bozec, Y.-Marie, Chabanet, P., Cheal, A., Cinner, J., Depczynski, M., Feary, D.A., Gagliano, M., Graham, Nicholas, Halford, A.H., Halpern, B.S., Harborne, A.R., Hoey, A.S., Holbrook, S.J., Jones, G.P., Kulbiki, M., Letourneur, Y., De Loma, T.L., McClanahan, T, McCormick, M.I., Meekan, M.G., Mumby, P. J., Munday, P.L., Öhman, M.C., Pratchett, M.S., Riegl, B., Sano, M., Schmitt, R.J., and Syms, C. (2010) Crucial knowledge gaps in current understanding of climate change impacts on coral reef fishes. Journal of Experimental Biology, 213. pp. 894-900.

Lee, Tristan, Zenger, Kyall R., Close, Robert L., Jones, Marilyn, and Phalen, David N. (2010) Defining spatial genetic structure and management units for vulnerable koala (Phascolarctos cinereus) populations in the Sydney region, Australia. Wildlife Research, 37 (2). pp. 156-165.

Heupel, Michelle R., Williams, Ashley J., Welch, David J., Davies, Campbell R., Penny, Ann, Kritzer, Jacob P., Marriott, Ross J., and Mapstone, Bruce D. (2010) Demographic characteristics of exploited tropical lutjanids: a comparative analysis. Fishery Bulletin, 108 (4). pp. 420-432.

Heupel, Michelle R., Williams, Ashley, Welch, David J., Davies, Campbell R., Adams, Samantha, Carlos, Gary, and Mapstone, Bruce D. (2010) Demography of a large exploited grouper, Plectropomus laevis: implications for fisheries management. Marine and Freshwater Research, 61 (2). pp. 184-195.

Moorhead, Jonathan A., and Zeng, Chaoshu (2010) Development of captive breeding techniques for marine ornamental fish: a review. Reviews in Fisheries Science, 18 (4). pp. 315-343.

Donelson, J.M., Munday, P.L., McCormick, M.I., Pankhurst, N.W., and Pankhurst, P.M. (2010) Effects of elevated water temperature and food availability on the reproductive performance of a coral reef fish. Marine Ecology Progress Series, 401. pp. 233-243.

Grutter, A.S., Cribb, T.H., McCallum, H., Pickering, J.L., and Mccormick, M.I. (2010) Effects of parasites on larval and juvenile stages of the coral reef fish Pomacentrus moluccensis. Coral Reefs, 29 (1). pp. 31-40.

Nelson, Paul N., Webb, Michael J., Orrell, Ian, van Rees, Harm, Banabas, Murom, Berthelsen, Suzanne, Sheaves, Marcus, Bakani, Felix, Pukam, Otto, Hoare, Michael, Griffiths, William, King, Graham, Carberry, Peter, Pipai, Rachel, McNeill, Ann, Meekers, Petra, Lord, Simon, Butler, James, Pattison, Tony, Armour, John, and Dewhurst, Charles (2010) Environmental sustainability of oil palm cultivation in Papua New Guinea. ACIAR Technical Reports, 75 . Australian Centre for International Agricultural Research, Canberra, ACT, Australia.

Connolly, Sean R., and Baird, Andrew H. (2010) Estimating dispersal potential for marine larvae: dynamic models applied to scleractinian corals. Ecology, 91 (12). pp. 3572-3583.

Goatley, Christopher H.R., Bellwood, David R., and Bellwood, Orpha (2010) Fishes on coral reefs: changing roles over the past 240 million years. Paleobiology, 36 (3). pp. 415-427.

Farnsworth, Claire A, Bellwood, David, and Van Herwerden, Lynne (2010) Genetic structure across the GBR: evidence from short-lived gobies. Marine Biology, 157 (5). pp. 945-953.

Catalano, Sarah R., and Hutson, Kate S. (2010) Harmful parasitic crustaceans infecting wild arripids: A potential threat to southern Australian finfish aquaculture. Aquaculture, 303 (1-4). pp. 101-104.

West, Roianne, Usher, Kim, and Foster, Kim (2010) Increased numbers of Australian Indigenous nurses would make a significant contribution to 'closing the gap' in Indigenous health: what is getting in the way? Contemporary Nurse, 36 (1-2). pp. 121-130.

McCormick, M.I., Moore, J.A.Y., and Munday, P.L. (2010) Influence of habitat degradation on fish replenishment. Coral Reefs, 29 (3). pp. 537-546.

Walther, Benjamin D., Kingsford, Michael J., O'Callaghan, Mark D., and McCulloch, Malcolm T. (2010) Interactive effects of ontogeny, food ration and temperature on elemental incorporation in otoliths of a coral reef fish. Environmental Biology of Fishes, 89 (3-4). pp. 441-451.

Owens, L., Liessmann, L., La Fauce, K., Nyguyen, T., and Zeng, C. (2010) Intranuclear bacilliform virus and hepatopancreatic parvovirus (PmergDNV) in the mud crab Scylla serrata (Forskal) of Australia. Aquaculture, 310 (1-2). pp. 47-51.

Souter, P., Willis, B.L., Bay, L.K., Caley, M.J., Muirhead, A., and van Oppen, M.J.H. (2010) Location and disturbance affect population genetic structure in four coral species of the genus Acropora on the Great Barrier Reef. Marine Ecology Progress Series, 416. pp. 35-45.

Fuiman, Lee A., Meekan, Mark G., and McCormick, Mark I. (2010) Maladaptive behavior reinforces a recruitment bottleneck in newly settled fishes. Oecologia, 164 (1). pp. 99-108.

Johnson, Johanna E., and Welch, David J. (2010) Marine fisheries management in a changing climate: a review of vulnerability and future options. Reviews in Fisheries Science, 18 (1). pp. 106-124.

Neaves, L.E., Zenger, K.R., Cooper, D.W., and Eldridge, M.D.B. (2010) Molecular detection of hybridization between sympatric kangaroo species in south-eastern Australia. Heredity, 104. pp. 502-512.

de Nys, Rocky, Guenther, Jana, and Uriz, Maria (2010) Natural control of fouling in biofouling. In: Dürr, Simone, and Thomason, Jeremy C., (eds.) Biofouling. Wiley-Blackwell, UK, pp. 109-120.

Kingsford, Michael J., and Carlson, Ian J. (2010) Patterns of distribution and movement of fishes, Ophthalmolepis lineolatus and Hypoplectrodes maccullochi, on temperate rocky reefs of south eastern Australia. Environmental Biology of Fishes, 88 (2). pp. 105-118.

Seneca, Francois O., Forêt , Sylvain, Ball, Eldon E., Smith-Keune, Carolyn, Miller, David J., and van Oppen, Madeleine J.H. (2010) Patterns of gene expression in a scleractinian coral undergoing natural bleaching. Marine Biotechnology, 12 (5). pp. 594-604.

Edmunds, Richard C., Van Herwerden, Lynne, and Fulton, Christopher J. (2010) Population-specific locomotor phenotypes are displayed by barramundi, Lates calcarifer, in response to thermal stress. Canadian Journal of Fisheries and Aquatic Sciences, 67 (7). pp. 1068-1074.

Bell, Johann, Batty, Mike, Ganachaud, Alex, Gehrke, Peter, Hobday, Alistair, Hoegh-Guldberg, Ove, Johnson, Johanna, Le Borgne, Robert, Lehodey, Patrick, Lough, Janice, Pickering, Tim, Pratchett, Morgan, Sheaves, Marcus, and Waycott, Michelle (2010) Preliminary assessment of the effects of climate change on fisheries and aquaculture in the Pacific. In: Gillett, Robert, (ed.) Fisheries in the Economies of the Pacific Island Countries and Territories. Pacific Studies Series . Asian Development Bank, Manila, Philippines, pp. 451-469.

Sale, P.F., Van Lavieren, H., Ablan Lagman, M.C., Atema, J., Butler, M., Fauvelot, C., Hogan, J.D., Jones, G.P., Lindeman, K.C., Paris, C.B., Steneck, R., and Stewart, H.L. (2010) Preserving Reef Connectivity: a Handbook for Marine Protected Area Managers. Report. Coral Reef Targeted Research &Capacity Building for Management Project (CRTR).

Luter, Heidi M., Whalan, Stephen, and Webster, Nicole S. (2010) Prevalence of tissue necrosis and brown spot lesions in a common marine sponge. Marine and Freshwater Research, 61 (4). pp. 484-489.

Pirozzi, Igor, Booth, Mark A., and Allan, Geoff L. (2010) Protein and energy utilization and the requirements for maintenance in juvenile mulloway (Argyrosomus japonicus). Fish Physiology and Biochemistry, 36 (1). pp. 109-121.

Catalano, Sarah R., Hutson, Kate S., Ratcliff, Rodney M., and Whittington, Ian D. (2010) Redescriptions of two species of microcotylid monogeneans from three arripid hosts in southern Australian waters. Systematic Parasitology, 76 (3). pp. 211-222.

Munday, Philip L., Dixson, Danielle L., McCormick, Mark I., Meekan, Mark, Ferrari, Maud C.O., and Chivers, Douglas P. (2010) Replenishment of fish populations is threatened by ocean acidification. Proceedings of the National Academy of Sciences of the United States of America, 107 (29). pp. 12930-12934.

Hoey, A.S. (2010) Size matters: macroalgal height influences the feeding response of coral reef herbivores. Marine Ecology Progress Series, 411. pp. 299-302.

Holmes, Thomas H., and McCormick, Mark I. (2010) Smell, learn and live: the role of chemical alarm cues in predator learning during early life history in a marine fish. Behavioural Processes, 83 (3). pp. 299-305.

Welch, David J., Mapstone, Bruce D., Davies, Campbell C., and Russ, Garry R. (2010) Spatial and fishing effects on sampling gear biases in a tropical reef line fishery. Marine and Freshwater Research, 61 (10). pp. 1134-1146.

Haapkylä, J., Melbourne-Thomas, J., Flavell, M., and Willis, B.L. (2010) Spatiotemporal patterns of coral disease prevalence on Heron Island, Great Barrier Reef, Australia. Coral Reefs, 29 (4). pp. 1035-1045.

Newman, Stephen J., Wright, Ian W., Rome, Ben M., Mackie, Michael C., Lewis, Paul D., Buckworth, Rik C., Ballagh, Aaron C., Garrett, Rod N., Stapley, Jason, Broderick, Damien, Ovenden, Jennifer R., and Welch, David J. (2010) Stock structure of Grey Mackerel, Scomberomorus semifasciatus (Pisces: Scombridae) across northern Australia, based on otolith stable isotope chemistry. Environmental Biology of Fishes, 89 (3-4). pp. 357-367.

Newton, James R., Smith-Keune, Carolyn, and Jerry, Dean R. (2010) Thermal tolerance varies in tropical and sub-tropical populations of barramundi (Lates calcarifer) consistent with local adaptation. Aquaculture, 308 (Supplement 1). S128-S132.

O'Shea, Owen R,, Kingsford, Michael J., and Seymour, Jamie (2010) Tide-related periodicity of manta rays and sharks to cleaning stations on a coral reef. Marine and Freshwater Research, 61 (1). pp. 65-73.

Templeman, Michelle A., and Kingsford, Michael J. (2010) Trace element accumulation in Cassiopea sp. (Scyphozoa) from urban marine environments in Australia. Marine Environmental Research, 69 (2). pp. 63-72.

Stella, J.S., Jones, G.P., and Pratchett, M.S. (2010) Variation in the structure of epifaunal invertebrate assemblages among coral hosts. Coral Reefs, 29 (4). pp. 957-973.

Pirozzi, I., Booth, M.A., and Allan, G.L. (2010) The interactive effects of dietary protein and energy on feed intake, growth and protein utilization of juvenile mulloway (Argyrosomus japonicus). Aquaculture Nutrition, 16 (1). pp. 61-71.

Charters, Robbie A., Lester, Robert J.G., Buckworth, Rik C., Newman, Stephen J., Ovenden, Jennifer R., Broderick, Damien, Kravchuck, Olena, Ballagh, Aaron, and Welch, David J. (2010) The stock structure of grey mackerel Scomberomorus semifasciatus in Australia as inferred from its parasite fauna. Fisheries Research, 101 (1-2). pp. 94-99.

Baker, Ron, and Sheaves, Marcus (2009) Overlooked small and juvenile piscivores dominate shallow-water estuarine "refuges" in tropical Australia. Estuarine, Coastal and Shelf Science , 85 (4). pp. 618-626.

Duckworth, Alan R., Wolff, Carsten W., and Luter, Heidi (2009) Patterns of abundance and size across varying spatial scales for the coral reef sponge Coscinoderma matthewsi. Marine Ecology Progress Series, 396. pp. 27-33.

Camus, Thomas, Zeng, Chaoshu, and McKinnon, A. David (2009) Egg production, egg hatching success and population increase of the tropical paracalanid copepod, Bestiolina similis (Calanoida: Paracalanidae) fed different microalgal diets. Aquaculture, 297 (1). pp. 169-175.

Elmhirst, Toby, Connolly, Sean R., and Hughes, Terry P. (2009) Connectivity, regime shifts and the resilience of coral reefs. Coral Reefs, 28 (4). pp. 949-957.

Cole, Andrew J, Chong-Seng, Karen, Pratchett, Morgan S., and Jones, Geoffrey P. (2009) Coral-feeding fishes slow progression of black-band disease. Coral Reefs, 28 (4). p. 965.

Hoey, Andrew S., and Bellwood, David R. (2009) Limited functional redundancy in a high diversity system: single species dominates key ecological process on coral reefs. Ecosystems, 12 (8). pp. 1316-1328.

Baird, Andrew H., Guest, James R., and Willis, Bette L. (2009) Systematic and biogeographical patterns in the reproductive biology of scleractinian corals. Annual Review of Ecology, Evolution, and Systematics, 40. pp. 551-571.

Ritchie, S.A., Rapley, L.P. , Williams, C., Johnson, P.H., Larkman, M., Silcock, R.M., Long, S.A., and Russell, R.C. (2009) A lethal ovitrap-based mass trapping scheme for dengue control in Australia: I. Public acceptability and performance of lethal ovitraps. Medical and Veterinary Entomology, 23 (4). pp. 295-302.

Bonin, Mary C., Munday, Philip L., McCormick, Mark I., Srinivasan, Maya, and Jones, Geoffrey P. (2009) Coral-dwelling fishes resistant to bleaching but not to mortality of host corals. Marine Ecology Progress Series, 394. pp. 215-222.

Hoogenboom, Mia O., Connolly, Sean R., and Anthony, Kenneth R.N. (2009) Effects of photoacclimation on the light niche of corals: a process-based approach. Marine Biology, 156 (12). pp. 2493-2503.

Molecular Ecology Resources Primer Development Consortium, , Almany, Glenn R., De Arruda, Maurício P., Arthofer, Wolfgang, Atallah, Z.K., Beissinger, Steven R., Berumen, Michael L., Bogdanowicz, S.M., Brown, S.D., Bruford, Michael W., Burdine, C., Busch, Jeremiah W., Campbell, Nathan R., Carey, D., Carstens, Bryan C., Chu, K.H., Cubeta, Marc A., Cuda, J.P., Cui, Zhaoxia, Datnoff, L.E., Dávila, J.A., Davis, Emily S., Davis, R.M., Diekmann, Onno E., Eizirik, Eduardo, Fargallo, J.A., Fernandes, Fabiano, Fukuda, Hideo, Gale, L.R., Gallagher, Elizabeth, Gao, Yongqiang, Girard, Philippe, Godhe, Anna, Gonçalves, Evonnildo C., Gouveia, Licinia, Grajczyk, Amber M., Grose, M.J., Gu, Zhifeng, Halldén, Christer, Härnström, Karolina, Hemmingsen, Amanda H., Holmes, Gerald, Huang, C.H., Huang, Chuan-chin, Hudman, S.P., Jones, Geoffrey P., Kanetis, Loukas, Karunasagar, Iddya, Karunasagar, Indrani, Keyghobadi, Nusha, Klosterman, S.J., Klug, Page E., Koch, J., Koopman, Margaret M., Köppler, Kirsten, Koshimizu, Eriko, Krumböck, Susanne, Kubisiak, T., Landis, J.B., Lasta, Mario L., Lee, Chow-Yang, Li, Qianqian, Li, Shou-Hsien, Lin, Rong-Chien, Liu, M., Liu, Na, Liu, W.C., Liu, Yuan, Loiseau, A., Luan, Weisha, Maruthachalam, K.K., McCormick, Helen M., Mellick, Rohan, Monnahan, P.J., Morielle-Versute, Eliana, Murray, Tomás E., Narum, Shawn R., Neufeld, Katie, De Nova, P.J.G., Ojiambo, Peter S., Okamoto, Nobuaki, Othman, Ahmad Sofiman, Overholt, W.A., Pardini, Renata, Paterson, Ian G., Patty, Olivia A., Paxton, Robert J., Planes, Serge, Porter, Carolyn, Pratchett, Morgan S., Püttker, Thomas, Rasic, Gordana, Rasool, Bilal, Rey, O., Riegler, Markus, Riehl, C., Roberts, John M.K., Roberts, P.D., Rochel, Elisabeth, Roe, Kevin J., Rossetto, Maurizio, Ruzzante, Daniel E., Sakamoto, Takashi, Saravanan, V., Sarturi, Cladinara Roberts, Schmidt, Anke, Schneider, Maria Paula Cruz, Schuler, Hannes, Serb, Jeanne M., Serrão, Ester T.A., Shi, Yaohua, Silva, Artur, Sin, Y.W., Sommer, Simone, Stauffer, Christian, Strüssmann, Carlos Augusto, Subbarao, K.V., Syms, Craig, Tan, Feng, Tejedor, Eugenio Daniel, Thorrold, Simon R., Trigiano, Robert N., Trucco, María I., Tsuchiya-Jerep, Mirian Tienko Nunes, Vergara, P., van de Vliet, Mirjam S., Wadl, Phillip A., Wang, Aimin, Wang, Hongxia, Wang, R.X., Wang, Xinwang, Wang, Yan, Weeks, Andrew R., Wei, Fuwen, Werner, William J., Wiley, E.O., Williams, D.A., Wilkins, Richard J., Wisely, Samantha M., With, Kimberly A., Wu, Danhua, Yao, Cheng-Te, Yau, Cynthia, Yeap, Beng-Keok, Zhai, Bao-Ping, Zhan, Xiangjiang, Zhang, Guo-Yan, Zhang, S.Y., Zhao, Ru, and Zhu, Lifeng (2009) Permanent genetic resources added to Molecular Ecology Resources Database 1 May 2009–31 July 2009. Molecular Ecology Resources, 9 (6). pp. 1460-1466.

Kosnik, Mathew, Hua, Quan, Kaufman, Darrell S., and Wust, Raphael A. (2009) Taphonomic bias and time-averaging in tropical molluscan death assemblages: differential shell half-lives in Great Barrier Reef sediment. Paleobiology, 35 (4). pp. 565-586.

Scardino, A.J., Zhang, H., Cookson, D.J, Lamb, R.N, and de Nys, R. (2009) The role of nano-roughness in antifouling. Biofouling, 25 (8). pp. 757-767.

Bellwood, David R., and Meyer, Christopher P. (2009) Endemism and evolution in the Coral Triangle: a call for clarity. Journal of Biogeography, 36 (10). pp. 2010-2012.

van Herwerden, Lynne, Aspden, William J., Newman, Stephen J., Pegg, Graham G., Briskey, Leica, and Sinclair, William (2009) A comparison of the population genetics of Lethrinus miniatus and Lutjanus sebae from the east and west coasts of Australia: evidence for panmixia and isolation. Fisheries Research, 100 (2). pp. 148-155.

Walker, Stefan P.W., and McCormick, Mark I. (2009) Sexual selection explains sex-specific growth plasticity and positive allometry for sexual size dimorphism in a reef fish. Proceedings of the Royal Society of London Series B, Biological Sciences, 276 (1671). pp. 3335-3343.

McCormick, Mark I. (2009) Behaviourally Mediated Phenotypic Selection in a Disturbed Coral Reef Environment. PLoS ONE, 4 (9). p. 7096.

Stockwell, Brian, Jadloc, Claro Renato L., Abesamis, Rene A., Alcala, Angel C., and Russ, Garry R. (2009) Trophic and benthic responses to no-take marine reserve protection in the Philippines. Marine Ecology Progress Series, 389. pp. 1-15.

Cooper, T.F., Gilmour, J.P., and Fabricius, K.E. (2009) Bioindicators of changes in water quality on coral reefs: review and recommendations for monitoring programmes. Coral Reefs, 28 (3). pp. 589-606.

Edmunds, Richard C., Hillersøy, Grethe, Momigliano, Paolo, and Van Herwerden, Lynne (2009) Classic approach revitalizes genomics: complete characterization of a candidate gene for thermal adaptation in two coral reef fishes. Marine Genomics, 2 (3-4). pp. 215-222.

Cowman, Peter F., Bellwood, David R., and van Herwerden, Lynne (2009) Dating the evolutionary origins of wrasse lineages (Labridae) and the rise of trophic novelty on coral reefs. Molecular Phylogenetics and Evolution, 52 (3). pp. 621-631.

Munday, Philip L., Donelson, Jennifer M., Dixson, Danielle L. , and Endo, Geoff G.K. (2009) Effects of ocean acidification on the early life history of a tropical marine fish. Proceedings of the Royal Society of London Series B, Biological Sciences, 276 (1671). pp. 3275-3283.

Lemberget, T., McCormick, M.I., and Wilson, D.T. (2009) Environmental influences on the replenishment of lizardfish (family Synodontidae) in Caribbean Panama. Coral Reefs, 28 (3). pp. 737-750.

Gotelli, Nicholas J., Anderson, Marti J., Hector, T. Arita, Chao, Anne, Colwell, Robert K., Connolly, Sean R., Currie, David J., Dunn, Robert R., Graves, Gary R., Green, Jessica L., Grytnes, John-Arvid, Jiang, Yi-Huei, Jetz, Walter, Lyons, S. Kathleen, McCain, Christy M., Magurran, Anne E., Rahbek, Carsten, Rangel, Thiago F.L.V.B., Soberón, Jorge, Webb, Campbell O., and Willig, Michael R. (2009) Patterns and causes of species richness: a general simulation model for macroecology. Ecology Letters, 12 (9). pp. 873-886.

Hobbs, J-P.A., Frisch, A.J., Hamanaka, T., McDonald, C.A., Gilligan, J.J., and Neilson, J. (2009) Seasonal aggregation of juvenile whale sharks (Rhincodon typus) at Christmas Island, Indian Ocean. Coral Reefs, 28 (3). p. 577.

Abrantes, Kátya, and Sheaves, Marcus (2009) Sources of nutrition supporting juvenile penaeid prawns in an Australian dry tropics estuary. Marine and Freshwater Research, 60 (9). pp. 949-959.

Nguyen, Thuy T.T., Davy, F. Brian, Rimmer, Michael A., and De Silva, Sena S. (2009) Use and exchange of genetic resources of emerging species for aquaculture and other purposes. Reviews in Aquaculture, 1 (3-4). pp. 260-274.

Pirozzi, Igor, and Booth, Mark A. (2009) The effect of temperature and body weight on the routine metabolic rate and postprandial metabolic response in mulloway, Argyrosomus japonicus. Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 154 (1). pp. 110-118.

Sato, Yui, Bourne, David G., and Willis, Bette L. (2009) Dynamics of seasonal outbreaks of black band disease in an assemblage of Montipora species at Pelorus Island (Great Barrier Reef, Australia). Proceedings of the Royal Society of London Series B, 276. pp. 2795-2803.

Watson, Sue-Ann, Southgate, Paul C., Tyler, Paul A., and Peck, Lloyd (2009) Early larval development of the Sydney rock oyster Saccostrea glomerata under near-future predictions of CO2 driven ocean acidification. Journal of Shellfish Research, 28 (3). pp. 431-437.

Slater, Matthew J., and Carton, Alexander G. (2009) Effect of sea cucumber (Australostichopus mollis) grazing on coastal sediments impacted by mussel farm deposition. Marine Pollution Bulletin, 58 (8). pp. 1123-1129.

Kroon, F.J., Munday, P.L., and Westcott, D.A. (2009) Equivalent whole-body concentrations of 11-ketotestosterone in female and male coral goby (Gobiodon erythrospilus), a bi-directional sex-changing fish. Journal of Fish Biology, 75 (3). pp. 685-692.

Carter, A.B., Williams, A.J., and Russ, G.R. (2009) Increased accuracy of batch fecundity estimates using oocyte stage ratios in Plectropomus leopardus. Journal of Fish Biology, 75 (3). pp. 716-722.

Munday, Philip L., Crawley, Natalie, and Nilsson, Göran E. (2009) Interacting effects of elevated temperature and ocean acidification on the aerobic performance of coral reef fishes. Marine Ecology Progress Series, 388. pp. 235-242.

Neaves, Linda E., Zenger, Kyall R., Prince, Robert I.T., Eldridge, Mark D.B., and Cooper, Desmond W. (2009) Landscape discontinuities influence gene flow and genetic structure in a large, vagile Australian mammal, Macropus fuliginosus. Molecular Ecology, 18 (16). pp. 3363-3378.

Abrego, David A., van Oppen, Madeleine J.H., and Willis, Bette L. (2009) Onset of algal endosymbiont specificity varies among closely related species of Acropora corals during early ontogeny. Molecular Ecology, 18 (16). pp. 3532-3543.

Baker, Ron, and Sheaves, Marcus (2009) Refugees or ravenous predators: detecting predation on new recruits to tropical estuarine nurseries. Wetlands Ecology and Management, 17 (4). pp. 317-330.

Mamangkey, N. Gustaf F., and Southgate, Paul C. (2009) Regeneration of excised mantle tissue by the silver-lip pearl oyster, Pinctada maxima (Jameson). Fish and Shellfish Immunology, 27 (2). pp. 164-174.

Wu, Xugan, Cheng, Yongxu, Zeng, Chaoshu, Liying, Sui, Southgate, Paul, Zhou, Gang, and Bian, Wenji (2009) Reproductive performance and offspring quality of Chinese mitten crab Eriocheir sinensis (H. Milne-Edwards) females fed an optimized formulated diet and the razor clam Sinonovacula constricta. Aquaculture Research, 40 (12). pp. 1335-1349.

Slater, Matthew J., Jeffs, Andrew G., and Carton, Alexander G. (2009) The use of the waste from green-lipped mussels as a food source for juvenile sea cucumber, Australostichopus mollis. Aquaculture, 292 (3-4). pp. 219-224.

van Herwerden, Lynne, Choat, J. Howard, Newman, Stephen J., Leray, Mattieu, and Hillersoy, Grethe (2009) Complex patterns of population structure and recruitment of Plectropomus leopardus (Pisces: Epinephelidae) in the Indo-West Pacific: implications for fisheries management. Marine Biology, 156 (8). pp. 1595-1607.

Guy, Jeffrey A., Jerry, Dean R., and Rowland, Stuart J. (2009) Heterosis in fingerlings from a diallel cross between two wild strains of silver perch (Bidyanus bidyanus). Aquaculture Research, 40 (11). pp. 1291-1300.

Gagliano, Monica, and McCormick, Mark I. (2009) Hormonally mediated maternal effects shape offspring survival potential in stressful environments. Oecologia, 160 (4). pp. 657-665.

Brierley, Andrew S., and Kingsford, Michael J. (2009) Impacts of climate change on marine organisms and ecosystems. Current Biology, 19 (14). R602-R614.

Zischke, M.T., Cribb, T.H., Welch, D.J., Sawynok, W., and Lester, R.J.G. (2009) Stock structure of blue threadfin Eleutheronema tetradactylum on the Queensland east coast, as determined by parasites and conventional tagging. Journal of Fish Biology, 75 (1). pp. 156-171.

Cooper, Timothy F., and Ulstrup, Karin E. (2009) Mesoscale variation in the photophysiology of the reef building coral Pocillopora damicornis along an environmental gradient. Estuarine, Coastal and Shelf Science , 83 (2). pp. 186-196.

Munday, P.L., Leis, J.M., Lough, J.M., Paris, C.B., Kingsford, M.J., Berumen, M.L., and Lambrechts, J. (2009) Climate change and coral reef connectivity. Coral Reefs, 28 (2). pp. 379-395.

Botsford, L.W., White, J.W., Coffroth, M-A., Paris, C.B., Planes, S., Shearer, T.L., Thorrold, S.R., and Jones, G.P. (2009) Connectivity and resilience of coral reef metapopulations in marine protected areas: matching empirical efforts to predictive needs. Coral Reefs, 28 (2). pp. 327-337.

Almany, G.R., Connolly, S.R., Heath, D.D., Hogan, J.D., Jones, G.P., McCook, L.J., Mills, M., Pressey, R.L., and Williamson, D.H. (2009) Connectivity, biodiversity conservation and the design of marine reserve networks for coral reefs. Coral Reefs, 28 (2). pp. 339-351.

Sheaves, Marcus, and Johnston, Ross (2009) Ecological drivers of spatial variability among fish fauna of 21 tropical Australian estuaries. Marine Ecology Progress Series, 385. pp. 245-260.

Smith-Keune, Carolyn, and Jerry, Dean R. (2009) High levels of intra-specific variation in the NG repeat region of the Pinctada maxima N66 organic matrix protein. Aquaculture Research, 40 (9). pp. 1054-1063.

Cantin, N.E., van Oppen, M.J.H., Willis, B.L., Mieog, J.C., and Negri, A.P. (2009) Juvenile corals can acquire more carbon from high-performance algal symbionts. Coral Reefs, 28 (2). pp. 405-414.

Jones, G.P., Almany, G.R., Russ, G.R., Sale, P.F., Steneck, R.S., Van Oppen, M.J.H., and Willis, B.L. (2009) Larval retention and connectivity among populations of corals and reef fishes: history, advances and challenges. Coral Reefs, 28 (2). pp. 307-325.

Gonzalez Cabello, Alonso, and Bellwood, David R. (2009) Local ecological impacts of regional biodiversity on reef fish assemblages. Journal of Biogeography, 36 (6). pp. 1129-1137.

McCook, L.J., Almany, G.R., Berumen, M.L., Day, J.C., Green, A.L., Jones, G.P., Leis, J.M., Planes, S., Russ, G.R., Sale, P.F., and Thorrold, S.R. (2009) Management under uncertainty: guide-lines for incorporating connectivity into the protection of coral reefs. Coral Reefs, 28 (2). pp. 353-366.

Goatley, Christopher, and Bellwood, David R. (2009) Morphological structure in a reef fish assemblage. Coral Reefs, 28 (2). pp. 1-9.

Jones, G.P., Russ, G.R., Sale, P.F., and Steneck, R.S. (2009) Theme section on “Larval connectivity, resilience and the future of coral reefs”. Coral Reefs, 28 (2). pp. 303-305.

Steneck, R.S., Paris, C.B., Arnold, S.N., Ablan-Lagman, M.C., Alcala, A.C., Butler, M.J., McCook, L.J., Russ, G.R., and Sale, P.F. (2009) Thinking and managing outside the box: coalescing connectivity networks to build region-wide resilience in coral reef ecosystems. Coral Reefs, 28 (2). pp. 367-378.

Cole, A.J., Pratchett, M.S., and Jones, G.P. (2009) Effects of coral bleaching on the feeding response of two species of coral-feeding fish. Journal of Experimental Marine Biology and Ecology, 373. pp. 11-15.

Feary, David A., McCormick, Mark I., and Jones, Geoffrey P. (2009) Growth of reef fishes in response to live coral cover. Journal of Experimental Marine Biology and Ecology, 373 (1). pp. 45-49.

Meyer, Eli, Aglyamova, Galina V., Wang, Shi, Buchanan-Carter, Jade, Abrego, David, Colbourne, John K., Willis, Bette L., and Matz, Mikhail V. (2009) Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx. BMC Genomics, 10 (219). pp. 1-18.

Hoegh-Guldberg, Ove, Hoegh-Guldberg, Hans, Veron, John E., Green, Alison, Gomez, Edgardo D., Lough, Janice, King, Melanie, Ambariyanto , Dr., Hansen, Lara, Cinner, Josh, Dews, Geoff, Russ, Garry, Schuttenberg, Heidi Z., Peñaflor, Eileen L., Eakin, C. Mark, Christensen, Tyler R.L., Abbey, Michael, Areki, Francis, Kosako, Rosemary A., Tewfik, Alexander , and Oliver, Jamie (2009) The Coral Triangle and Climate Change: ecosystems, people and societies at risk. Report. WWF Australia, Sydney, NSW, Australia.

Littman, Raechel A., Willis, Bette L., Pfeffer, Christian, and Bourne, David G. (2009) Diversities of coral-associated bacteria differ with location, but not species, for three acroporid corals on the Great Barrier Reef. FEMS Microbiology Ecology, 68 (2). pp. 152-163.

Abrantes, Kátya, and Sheaves, Marcus (2009) Food web structure in a near-pristine mangrove area of the Australian Wet Tropics. Estuarine, Coastal and Shelf Science, 82 (4). pp. 597-607.

McCormick, Mark I. (2009) Indirect effects of heterospecific interactions on progeny size through maternal stress. Oikos, 118 (5). pp. 744-752.

Pratchett, M.S., Schenk, T.J., Baine, M., Syms, C., and Baird, A.H. (2009) Selective coral mortality associated with outbreaks of Acanthaster planci L. in Bootless Bay, Papua New Guinea. Marine Environmental Research, 67 (4-5). pp. 230-236.

Romano, Nicholas, and Zeng, Chaoshu (2009) Subchronic exposure to nitrite, potassium and their combination on survival, growth, total haemocyte count and gill structure of juvenile blue swimmer crabs, Portunus pelagicus. Ecotoxicology and Environmental Safety, 72 (4). pp. 1287-1295.

de Nys, R., and Guenther, J. (2009) The impact and control of biofouling in marine finfish aquaculture. In: Hellio, Claire, and Yebra, Diego, (eds.) Advances in Marine Antifouling Coatings and Technologies. Woodhead Publishing, Cambridge,UK, pp. 177-221.

Hobbs, Jean-Paul A., Frisch, Ashley J., Allen, Gerald R., and van Herwerden, Lynne (2009) Marine hybrid hotspot at Indo-Pacific biogeographic border. Biology Letters, 5 (2). pp. 258-261.

Donelson, Jennifer M., Munday, Philip L., and McCormick, Mark I. (2009) Parental effects on offspring life histories: when are they important? Biology Letters, 5 (2). pp. 262-265.

Romano, Nicholas, and Zeng, Chaoshu (2009) Evaluating the newly proposed protocol of incorporated potassium in nitrate toxicity experiments at different salinities: a case study with the tiger prawn, Penaeus monodon, juveniles. Aquaculture, 289 (3). pp. 304-309.

Planes, Serge, Jones, Geoffrey P., and Thorrold, Simon R. (2009) Larval dispersal connects fish populations in a network of marine protected areas. Proceedings of the National Academy of Sciences, 106 (14). pp. 5693-5697.

Lober, Malwine, and Zeng, Chaoshu (2009) Effect of microalgae concentration on larval survival, development and growth of an Australian strain of giant freshwater prawn Macrobrachium rosenbergii. Aquaculture, 289 (1). pp. 95-100.

Nankervis, L., and Southgate, P.C. (2009) Enzyme and acid treatment of fish meal for incorporation into formulated microbound diets for barramundi (Lates calcarifer) larvae. Aquaculture Nutrition, 15 (2). pp. 135-143.

Saenz-Agudelo, P., Jones, G.P., Thorrold, S.R., and Planes, S. (2009) Estimating connectivity in marine populations: an empirical evaluation of assignment tests and parentage analysis under different gene flow scenarios. Molecular Ecology, 18 (8). pp. 1765-1776.

Pirozzi, Igor, Booth, Mark A, and Pankhurst, Patricia M. (2009) The effect of stocking density and repeated handling on the growth of juvenile mulloway, Argyrosomus japonicus (Temminck & Schlegel 1843). Aquaculture International, 17 (2). pp. 199-205.

Pirozzi, Igor, and Booth, Mark A. (2009) The routine metabolic rate of mulloway (Argyrosomus japonicus: Sciaenidae) and yellowtail kingfish (Seriola lalandi: Carangidae) acclimated to six different temperatures. Comparative Biochemistry and Physiology: Part A, 152 (4). pp. 586-592.

Mamangkey, N. Gustav F., Acosta-Salmon, Hector, and Southgate, Paul C. (2009) Use of anaesthetics with the silver-lip pearl oyster, Pinctada maxima (Jameson). Aquaculture, 288 (3-4). pp. 280-284.

Kingsford, M.J. (2009) Contrasting patterns of reef utilization and recruitment of coral trout (Plectropomus leopardus) and snapper (Lutjanus carponotatus) at One Tree Island, southern Great Barrier Reef. Coral Reefs, 28 (1). pp. 251-264.

Cole, A.J., Pratchett, M.S., and Jones, G.P. (2009) Coral-feeding wrasse scars massive Porites colonies. Coral Reefs, 28 (1). p. 207.

Hoogenboom, Mia O., and Connolly, Sean R. (2009) Defining fundamental niche dimensions of corals: synergistic effects of colony size, light, and flow. Ecology, 90 (3). pp. 767-780.

Bonaldo, Roberta Martini, and Bellwood, David R. (2009) Dynamics of parrotfish grazing scars. Marine Biology, 156 (4). pp. 771-777.

Howells, E.J., van Oppen, M.J.H., and Willis, B.L. (2009) High genetic differentiation and cross-shelf patterns of genetic diversity among Great Barrier Reef populations of Symbiodinium. Coral Reefs, 28 (1). pp. 215-225.

Holmes, Thomas H., and McCormick, Mark I. (2009) Influence of prey body characteristics and performance on predator selection. Oecologia, 159 (2). pp. 401-413.

Bonin, M.C., Srinivasan, M., Almany, G.R., and Jones, G.P. (2009) Interactive effects of interspecifc competition and microhabitat on early post-settlement survival in a coral reef fish. Coral Reefs, 28 (1). pp. 265-274.

Fauvelot, C., Smith-Keune, C., Jerry, D.R., Buston, P.M., and Planes, S. (2009) Isolation and characterization of 16 microsatellite loci in the humbug damselfish, Dascyllus aruanus (family Pomacentridae). Molecular Ecology Resources, 9 (2). pp. 651-653.

Cvitanovic, C., and Bellwood, D.R. (2009) Local variation in herbivore feeding activity on an inshore reef of the Great Barrier Reef. Coral Reefs, 28 (1). pp. 127-133.

Williamson, David, Jones, Geoffrey, Thorrold, Simon R, and Frisch, Ashley J. (2009) Transgenerational marking of marine fish larvae: stable-isotope retention, physiological effects and health issues. Journal of Fish Biology, 74 (4). pp. 891-905.

Sussman, Meir, Mieog, Jos C., Doyle, Jason R., Victor, Steven, Willis, Bette L., and Bourne, David G. (2009) Vibrio Zinc-Metalloprotease causes photoinactivation of coral endosymbionts and coral tissue lesions. PLoS ONE, 4 (2). p. 4511.

Haapkyla, Jessica, Seymour, Adrian S., Barneah, Orit, Brickner, Itzchak, Hennige, Sebastian, Suggett, David, and Smith, David (2009) Association of Waminoa sp. (Acoela) with corals in the Wakatobi Marine Park, South-East Sulawesi, Indonesia. Marine Biology, 156. pp. 1021-1027.

Wismer, Sharon, Hoey, Andrew, and Bellwood, David R. (2009) Cross-shelf benthic community structure on the Great Barrier Reef: relationships between macroalgal cover and herbivore biomass. Marine Ecology Progress Series, 376. pp. 45-54.

Munday, Philip L., Dixson, Danielle L., Donelson, Jennifer M., Jones, Geoffrey P., Pratchett, Morgan S., Devitsina, Galina V., and Døving, Kjell B. (2009) Ocean acidification impairs olfactory discrimination and homing ability of a marine fish. Proceedings of the National Academy of Sciences of the United States of America, 106 (6). pp. 1848-1852.

Cano-Gómez, Ana, Bourne, David G., Hall, Michael R., Owens, Leigh, and Høj, Lone (2009) Molecular identification, typing and tracking of Vibrio harveyi in aquaculture systems: current methods and future prospects. Aquaculture, 287 (1-2). pp. 1-10.

Haynes, Gwilym D., Gongora, Jaime, Nicholas, Frank W., and Zenger, Kyall R. (2009) Rapid identification of maternal lineages in common carp (Cyprinus carpio L.) using real-time PCR and high resolution melt-curve analysis. Aquaculture, 287 (1-2). pp. 59-66.

Camus, Thomas, and Zeng, Chaoshu (2009) The effects of stocking density on egg production and hatching success, cannibalism rate, sex ratio and population growth of the tropical calanoid copepod Acartia sinjiensis. Aquaculture, 287 (1). pp. 145-151.

Kingsford, Michael J., Hughes, Julian M., and Patterson, Heather M. (2009) Otolith chemistry of the non-dispersing reef fish Acanthochromis polyacanthus: cross-shelf patterns from the central Great Barrier Reef. Marine Ecology Progress Series, 377. pp. 279-288.

Palmer, Caroline V., Roth, Melissa S., and Gates, Ruth D. (2009) Red fluorescent protein responsible for pigmentation in Trematode-infected Porites compressa tissues. Biological Bulletin, 216 (1). pp. 68-74.

Lemberget, Tove, and McCormick, Mark I. (2009) Replenishment success linked to fluctuating asymmetry in larval fish. Oecologia, 159 (1). pp. 83-93.

Morita, Masaya, Iguchi, Akira, and Takemura, Akihiro (2009) Roles of calmodulin and calcium/calmodulin-dependent protein kinase in flagellar motility regulation in the coral Acropora digitifera. Marine Biotechnology, 11 (1). pp. 118-123.

Hernaman, V., Probert, P.K., and Robbins, W.D. (2009) Trophic ecology of coral reef gobies: interspecific, ontogenetic, and seasonal comparison of diet and feeding intensity. Marine Biology, 156 (3). pp. 317-330.

Smith, Greg G., Hall, Michael W., and Salmon, Matthew (2009) Use of microspheres, fresh and microbound diets to ascertain dietary path, component size, and digestive gland functioning in phyllosoma of the spiny lobster Panulirus ornatus. New Zealand Journal of Marine and Freshwater Research, 43 (1). pp. 205-215.

Holme, May-Helen, Zeng, Chaoshu, and Southgate, Paul C. (2009) A review of recent progress toward development of a formulated microbound diet for mud crab, Scylla serrata, larvae and their nutritional requirements. Aquaculture, 286 (3). pp. 164-175.

Heupel, M.R., Williams, A.J., Welch, D.J., Ballagh, A., Mapstone, B.D., Carlos, G., Davies, C., and Simpfendorfer, C.A. (2009) Effects of fishing on tropical reef associated shark populations on the Great Barrier Reef. Fisheries Research, 95 (2). pp. 350-361.

Lind, Curtis E., Evans, Brad S., Knauer, Jens, Taylor, Joseph J.U., and Jerry, Dean R. (2009) Decreased genetic diversity and a reduced effective population size in cultured silver-lipped pearl oysters (Pinctada maxima). Aquaculture, 286 (1-2). pp. 12-19.

Scardino, A.J., Hudleston, D., Peng, Z., Paul, N.A., and de Nys, R. (2009) Biomimetic characterisation of key surface parameters for the development of fouling resistant materials. Biofouling, 25 (1). pp. 83-93.

Gershwin, Lisa-ann, and Dabinett, Karen (2009) Comparison of eight types of protective clothing against Irukandji jellyfish stings. Journal of Coastal Research, 25 (1). pp. 117-130.

Williams, Ashley J., Davies, Campbell R., Mapstone, Bruce D., Currey, Leanne M., Welch, David J., Begg, Gavin, A., Ballagh, Aaron C., Choat, J. Howard, Murchie, Cameron D., and Simpfendorfer, Colin A. (2009) Age-based demography of humpback grouper Cromileptes altivelis: implications for fisheries management and conservation. Endangered Species Research, 9 (1). pp. 67-79.

Littman, Raechel A., Willis, Bette L., and Bourne, David G. (2009) Bacterial communities of juvenile corals infected with different Symbiodinium (dinoflagellate) clades. Marine Ecology Progress Series, 389. pp. 45-59.

McCormick, M.I., and Gagliano, M. (2009) Carry-over effects - the importance of a good start. In: Proceedings of the 11th International Coral Reef Symposium, Ft. Lauderdale, Florida, July 2008. From: 11th International Coral Reef Symposium 2008, 07 July - 11 July 2008, Fort Lauderdale, FL, USA.

Guenther, Jana, Wright, Anthony D., Burns, Kathryn, and de Nys, Rocky (2009) Chemical antifouling defences of sea stars: effects of the natural products hexadecanoic acid, cholesterol, lathosterol and sitosterol. Marine Ecology Progress Series, 385. pp. 137-149.

Lloyd, Ray, Alford, Ross A., and Schwarzkopf, Lin (2009) Chemical discrimination among predators by lizards: responses of three skink species to the odours of high and low-threat varanid predators. Austral Ecology, 34. pp. 50-54.

Puill-Stephan, Eneour, Willis, Bette L., van Herwerden, Lynne, and van Oppen, Madeleine JH (2009) Chimerism in wild adult populations of the broadcast spawning coral Acropora millepora on the Great Barrier Reef. PLoS ONE, 4 (1). p. 7751.

Weeks, Rebecca, Russ, Garry R., Alcala, Angel C., and White, Alan T. (2009) Community-based MPAs: their contribution towards achieving regional-scale conservation targets in the Philippines. In: Proceedings of the International Marine Conservation Congress Annual Convention. From: International Marine Conservation Congress Annual Convention, 17-24 May 2009, Washington, DC, USA.

Edmunds, Richard C., van Herwerden, Lynne, Smith-Keune, Carolyn, and Jerry, Dean R. (2009) Comparative characterization of a temperature responsive gene (lactate dehydrogenase-B, ldh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus. International Journal of Biological Sciences, 5 (6). pp. 558-569.

Sheaves, Marcus (2009) Consequences of ecological connectivity: the coastal ecosystem mosaic. Marine Ecology Progress Series, 391. pp. 107-115.

Welch, D.J., Buckworth, R.C., Ovenden, J.R., Newman, S.J., Broderick, D., Lester, R.J.G., Ballagh, A.C., Stapley, J., Charters, R.A., and Gribble, N.A. (2009) Determination of management units for grey mackerel fisheries in northern Australia. Report. James Cook University, Townsville, Queensland, Australia.

Coker, D.J., Pratchett, M.S., and Munday, P.L. (2009) Does body colouration influence predation risk of coral dwelling reef fish in bleached landscapes? In: Proceedings of the 11th Coral Reef Symposium, pp. 1281-1285. From: 11th International Coral Reef Symposium, 7-11 July 2008, Fort Lauderdale, Florida, USA.

Diaz-Pulido, Guillermo, McCook, Laurence, Dove, Sophie, Berkelmans, Ray, Roff, George, Kline, David I., Weeks, Scarla, Evans, Richard D., Williamson, David H., and Hoegh-Guldberg, Ove (2009) Doom and boom on a resilient reef: climate change, algal overgrowth and coral recovery. PLoS ONE, 4 (4). - .

Peplow, L.M., Kingsford, M.J., Seymour, J.E., and Van Oppen, M.J.H. (2009) Eight microsatellite loci for the Irukandji syndrome-causing carybdeid jellyfish, Carukia barnesi (Cubozoa, Cnidaria). Molecular Ecology Resources, 9. pp. 670-672.

Nilsson, Göran E., Crawley, Natalie, Lunde, Ida G., and Munday, Philip L. (2009) Elevated temperature reduces the respiratory scope of coral reef fishes. Global Change Biology, 15 (6). pp. 1405-1412.

Fox, Rebecca J., Sunderland, Tony L., Hoey, Andrew, and Bellwood, David R. (2009) Estimating ecosystem function: contrasting roles of closely related herbivorous rabbitfishes (Siganidae) on coral reefs. Marine Ecology Progress Series, 385. pp. 261-269.

Adams, Lisa M., Cumbo, Vivian, and Takabayashi, Misaki (2009) Exposure to sediment enhances primary acquisition of Symbiodinium by asymbiotic coral larvae. Marine Ecology Progress Series, 377. pp. 179-156.

Baumgartner, Finn A., Motti, Cherie, de Nys, Rocky, and Paul, Nicholas A. (2009) Feeding preferences and host associations of specialist marine herbivores align with quantitative variation in seaweed secondary metabolites. Marine Ecology Progress Series, 396. pp. 1-12.

Walker, Stefan P.W., and McCormick, Mark I. (2009) Fish ears are sensitive to sex change. Biology Letters, 5. pp. 73-76.

Meyer, Eli, Davies, Sarah, Wang, Shi, Willis, Bette L., Abrego, David, Juenger, Thomas E., and Matz, Mikhail V. (2009) Genetic variation in responses to a settlement cue and elevated temperature in the reef-building coral Acropora millepora. Marine Ecology Progress Series, 392. pp. 81-92.

Munday, P. L., Ryen, C.A., McCormick, M. I., and Walker, S.P.W. (2009) Growth acceleration, behaviour and otolith check marks associated with sex change in the wrasse Halichoeres miniatus. Coral Reefs, 28 (3). pp. 623-634.

Page, Cathie A., Baker, David M., Harvell, C Drew, Golbuu, Yimnang, Raymundo, Laurie, Neale, Stephen J., Rosell, Kathryn B., Rypien, Krystal L., Andras, Jason P., and Willis, Bette L. (2009) Influence of marine reserves on coral disease prevalence. Diseases of Aquatic Organisms, 87 (1-2). pp. 135-150.

Horne, John B., McIlwain, Jennifer L., and Van Herwerden, Lynne (2009) Isolation of 15 new polymorphic microsatellite markers from the blue-spine unicornfish Naso unicornis. Conservation Genetics Resources, 2. pp. 1-4.

Baird, Andrew, Birrell, Chico L., Hughes, Terence, McDonald, Abbi, Nojima, Satoshi, Page, Cathie A., Pratchett, Morgan S., and Yamasaki, Hideo (2009) Latitudinal variation in reproductive synchrony in Acropora assemblages: Japan vs. Australia. Galaxea, Journal of Coral Reef Studies, 11 (2). pp. 101-108.

Owens, Leigh, La Fauce, Kathy , Juntunen, Karen, Hayakijkosol, Orachun, and Zeng, Chaoshu (2009) Macrobrachium rosenbergii nodavirus disease (white tail disease) in Australia. Diseases of Aquatic Organisms, 85 (3). pp. 175-180.

Green, Alison L., and Bellwood, David R. (2009) Monitoring Functional Groups of Herbivorous Reef Fishes as Indicators of Coral Reef Resilience: a practical guide for coral reef managers in the Asia Pacific Region. Manual. The International Union for the Conservation of Nature and Natural Resources, Gland, Switzerland.

Gagliano, Monica, Dunlap, Walter C., de Nys, Rocky, and Depczynski, Martial (2009) Ockham’s razor gone blunt: coenzyme Q adaptation and redox balance in tropical reef fishes. Biology Letters, 5 (3). pp. 360-363.

Steicke, C., Jegatheesan, V., and Zeng, C. (2009) Performance of a recirculating tank-based system utilizing floating and submerged filters with a denitrification column for the culture of barramundi (Lates calcarifer). In: Proceedings of the Fourth International Symposium on Southeast Asian Water Environment (4), pp. 253-260. From: Fourth International Symposium on Southeast Asian Water Environment, 6-8 December 2006, Bangkok, Thailand.

Curley, Belinda G., and Gillings, Michael R. (2009) Population connectivity in the temperate damselfish Parma microlepis: analyses of genetic structure across multiple spatial scales. Marine Biology, 156 (3). pp. 381-393.

Frisch, Ashley J., and Hobbs, Jean-Paul A. (2009) Rapid assessment of anemone and anemonefish populations at the Keppel Islands [electronic resource]: a report to the Great Barrier Reef Marine Park Authority. Report. Great Barrier Reef Marine Park Authority, Australia.

Steicke, C.R., Jegatheesan, V., and Zeng, C. (2009) Recirculating aquaculture systems - a review. In: Vigneswaran, S., (ed.) Water and Wastewater Treatment Technologies. Encyclopedia of Life Support Systems , 1-2 . EOLSS, Oxford, UK, pp. 1-25.

Bellwood, David R., and Meyer, Christopher P. (2009) Searching for heat in a marine biodiversity hotspot. Journal of Biogeography, 36. pp. 569-576.

Tziouveli, Vasiliki, and Smith, Greg (2009) Sexual maturity and environmental sex determination in the white-striped cleaner shrimp Lysmata amboinensis. Invertebrate Reproduction and Development, 53 (3). pp. 155-163.

Haapkyla, Jessica, Unsworth, Richard K.F., Seymour, Adrian S., Melbourne-Thomas, Jessica, Flavell, Mike, Willis, Bette L., and Smith, David J. (2009) Spatio-temporal coral disease dynamics in the Wakatobi Marine National Park, South-East Sulawesi, Indonesia. Diseases of Aquatic Organisms, 87 (1-2). pp. 105-115.

Connolly, Sean R, Dornelas, Maria, Bellwood, David R., and Hughes, Terence P (2009) Testing species abundance models: a new bootstrap approach applied to Indo-Pacific coral reefs. Ecology, 90 (11). pp. 3138-3149.

Bell, Johann D., Clua, Eric, Hair, Cathy A., Galzin, Rene, and Doherty, Peter J. (2009) The capture and culture of post-larval fish and invertebrates for the marine ornamental trade. Reviews in Fisheries Science, 17 (2). pp. 223-240.

Carter, Alexandra, Williams, Ashley, Russ, Garry, and Tobin, Andrew (2009) The effects of no-take zoning, region and year on reproductive output of the common coral trout, Plectropomus leopardus. In: Proceedings of the International Marine Conservation Congress Annual Convention. From: International Marine Conservation Congress Annual Convention, 17-24 May 2009, Washington, DC, USA.

Williamson, David H., Jones, Geoffrey P., and Thorrold, Simon R. (2009) An experimental evaluation of transgenerational isotope labelling in a coral reef grouper. Marine Biology, 156. pp. 2517-2525.

Rapley, Luke, Johnson, P.H., Williams, C. R., Silcock, R. M., Larkman, M., Long, S. A., Russel, R. C., and Ritchie, Scott (2009) A lethal ovitrap-based mass trapping scheme for dengue control in Australia: II. Impact on populations of the mosquito Aedes aegypti. Medical and Veterinary Entomology, 23 (4). pp. 303-316.

Kim, Kiho, Page, Cathie A., and Harvell, C. Drew (2009) The role of environment and microorganisms in diseases of corals: overview of DAO Special 5. Diseases of Aquatic Organisms, 87 (1-2). pp. 1-3.

Trip, Elisabeth L., Choat, J. Howard, Wilson, David T., and Robertson, D. Ross (2008) Inter-oceanic analysis of demographic variation in a widely distributed Indo-Pacific coral reef fish. Marine Ecology Progress Series, 373. pp. 97-109.

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Palmer, Caroline V., Mydlarz, Laura D., and Willis, Bette L. (2008) Evidence of an inflammatory-like response in non-normally pigmented tissues of two scleractinian corals. Proceedings of the Royal Society of London Series B, Biological Sciences, 275 (1652). pp. 2687-2693.

de Paula Silva, Pedro H., McBride, S., de Nys, Rocky, and Paul, Nicholas (2008) Integrating filamentous 'green tide' algae into tropical pond-based aquaculture. Aquaculture, 284 (1-4). pp. 74-80.

Collins, Angela B., Heupel, Michelle R., and Simpfendorfer, Colin A. (2008) Spatial distribution and long-term movement patterns of cownose rays Rhinoptera bonasus within an estuarine river. Estuaries and Coasts, 31 (6). pp. 1174-1183.

Whalan, S., Ettinger-Epstein, P., and de Nys, R. (2008) The effect of temperature on larval pre-settlement duration and metamorphosis for the sponge, Rhopaloeides odorabile. Coral Reefs, 27 (4). pp. 783-786.

Sheaves, Marcus, Duc, Nguyen Huu , and Khoa, Nguyen Xuan (2008) Ecological attributes of a tropical river basin vulnerable to the impacts of clustered hydropower developments. Marine and Freshwater Research, 59 (11). pp. 971-986.

Carlson, John K., Heupel, Michelle R., Bethea, Dana M., and Hollensead, Lisa D. (2008) Coastal habitat use and residency of juvenile Atlantic sharpnose sharks (Rhizoprionodon terraenovae). Estuaries and Coasts, 31 (5). pp. 931-940.

Horne, John B., van Herwerden, Lynne, Choat, J. Howard, and Robertson, D.R. (2008) High population connectivity across the Indo-Pacific: congruent lack of phylogeographic structure in three reef fish congeners. Molecular Phylogenetics and Evolution, 49 (2). pp. 629-638.

Kosnik, Matthew A., Kaufman, Darrell S., and Hua, Quan (2008) Identifying outliers and assessing the accuracy of amino acid racemization measurements for geochronology: I. Age calibration curves. Quaternary Geochronology, 3 (4). pp. 308-327.

Kosnik, Matthew A., and Kaufman, Darrell S. (2008) Identifying outliers and assessing the accuracy of amino acid racemization measurements for geochronology: II. Data screening. Quaternary Geochronology, 3 (4). pp. 328-341.

Abrantes, Katya, and Sheaves, Marcus (2008) Incorporation of terrestrial wetland material into aquatic food webs in a tropical estuarine wetland. Estuarine, Coastal and Shelf Science , 80 (3). pp. 401-412.

Madin, Joshua S., O'Donnell, Michael J., and Connolly, Sean R. (2008) Climate-mediated mechanical changes to post-disturbance coral assemblages. Biology Letters, 4 (5). pp. 490-493.

Abrego, David, Ulstrup, Karin E., Willis, Bette L., and van Oppen, Madeleine J.H. (2008) Species-specific interactions between algal endosymbionts and coral hosts define their bleaching response to heat and light stress. Proceedings of the Royal Society of London Series B, Biological Sciences, 275 (1648). pp. 2273-2282.

Dornelas, Maria, and Connolly, Sean (2008) Multiple modes in a coral species abundance distribution. Ecology Letters, 11 (10). pp. 1008-1016.

Belmaker, Jonathan, Ziv, Yaron, Shashar, Nadav, and Connolly, Sean R. (2008) Regional variation in the hierarchical partitioning of diversity in coral-dwelling fishes. Ecology, 89 (10). pp. 2829-2840.

Whalan, S., Ettinger-Epstein, P., Battershill, C., and de Nys, R. (2008) Larval vertical migration and hierarchical selectivity of settlement in a brooding marine sponge. Marine Ecology Progress Series, 368. pp. 145-154.

Littman, Raechel A., van Oppen, Madeleine J.H., and Willis, Bette L. (2008) Methods for sampling free-living Symbiodinium (zooxanthellae) and their distribution and abundance at Lizard Island (Great Barrier Reef). Journal of Experimental Marine Biology and Ecology, 364 (1). pp. 48-53.

Paul, Nicholas, and de Nys, Rocky (2008) Promise and pitfalls of locally abundant seaweeds as biofilters for integrated aquaculture. Aquaculture, 281 (1-4). pp. 49-55.

Steneck, Robert H., Bustamante, Rodrigo H., Dayton, Paul K., Jones, Geoffrey P., and Hobday, Alistair J. (2008) Current status and future trends in kelp forest ecosystems. In: Polunin, Nicholas V.C., (ed.) Aquatic Ecosystems: trends and global prospects. Cambridge University Press, Cambridge, UK, pp. 226-241.

Cole, Andrew J., Pratchett, Morgan S., and Jones, Geoffrey P. (2008) Diversity and functional importance of coral-feeding fishes on tropical coral reefs. Fish and Fisheries, 9. pp. 286-307.

Phelan, M.J., Gribble, N.A., and Garrett, R.N. (2008) Fishery biology and management of Protonibea diacanthus (Sciaenidae) aggregations in far Northern Cape York Peninsula waters. Continental Shelf Research, 28 (16). pp. 2143-2151.

Grutter, A.S., Pickering, J.L., McCallum, H., and McCormick, M.I. (2008) Impact of micropredatory gnathiid isopods on young coral reef fishes. Coral Reefs, 27 (3). pp. 655-661.

Fox, R.J., and Bellwood, D. R. (2008) Remote video bioassays reveal the potential feeding impact of the rabbitfish Siganus canaliculatus (f: Siganidae) on an inner-shelf reef of the Great Barrier Reef. Coral Reefs, 27 (3). pp. 605-615.

Graham, E.M., Baird, A.H., and Connolly, S.R. (2008) Survival dynamics of scleractinian coral larvae and implications for dispersal. Coral Reefs, 27 (3). pp. 529-539.

Cooper, Timothy F., Ridd, Peter V., Ulstrup, Karin E., Humphrey, Craig, Slivokoff, Matthew, and Fabricius, Katharina E. (2008) Temporal dynamics in coral bioindicators for water quality on coastal coral reefs of the Great Barrier Reef. Marine and Freshwater Research, 59 (8). pp. 703-716.

Work, Thierry M., Richardson, Laurie L., Reynolds, Taylor L., and Willis, Bette L. (2008) Biomedical and veterinary science can increase our understanding of coral disease. Journal of Experimental Marine Biology and Ecology, 362 (2). pp. 63-70.

Camus, Thomas, and Zeng, Chaoshu (2008) Effects of photoperiod on egg production and hatching success, naupliar and copepodite development, adult sex ratio and life expectancy of the tropical calanoid copepod Acartia sinjiensis. Aquaculture, 280 (1-4). pp. 220-226.

Kvingedal, Renate, Evans, Bradley S., Taylor, Joseph J.U., Knauer, Jens, and Jerry, Dean R. (2008) Family by environment interactions in shell size of 43-day old silver-lip pearl oyster (Pinctada maxima), five families reared under different nursery conditions. Aquaculture, 279 (1-4). pp. 23-28.

Renema, W., Bellwood, D.R., Braga, J.C., Bromfield, K., Hall, R., Johnson, K.G., Lunt, P., Meyer, C.P., McMonagle, L.B., Morley, R.J., O'Dea, A., Todd, J.A., Wesselingh, F.P., Wilson, M.E.J., and Pandlofi, J.M. (2008) Hopping hotspots: global shifts in marine biodiversity. Science, 321 (5889). pp. 654-657.

Ettinger-Epstein, Piers, and Kingsford, Michael J. (2008) Effects of the El Nino southern oscillation on Turbo torquatus (Gastropoda) and their kelp habitat. Austral Ecology, 33 (5). pp. 594-606.

Gershwin, Lisa-ann, and Dawes, Peter (2008) Preliminary observations on the response of Chironex fleckeri (Cnidaria: Cubozoa: Chirodropida) to different colors of light. Biological Bulletin, 215 (1). pp. 57-62.

Boyle, M.C., and Limpus, C.J. (2008) The stomach contents of post-hatchling green and loggerhead sea turtles in the southwest Pacific: an insight into habitat association. Marine Biology, 155 (2). pp. 233-241.

Sofonia, Jeremy J., and Anthony, Kenneth R.N. (2008) High-sediment tolerance in the reef coral Turbinaria mesenterina from the inner Great Barrier Reef lagoon (Australia). Estuarine, Coastal and Shelf Science , 78 (4). pp. 748-752.

Wellenreuther, Maren, Syms, Craig, and Clements, Kendall D. (2008) Body size and ecological diversification in a sister species pair of triplefin fishes. Evolutionary Ecology, 22 (4). pp. 575-592.

Brown, I.W., Sumpton, W.D., McLennan, M., Welch, D.J., Kirkwood, J., Butcher, A., Mapleston, A., Mayer, D., Begg, G., Campbell, M., Halliday, I., and Sawynok, W. (2008) National Strategy for the Survival of Released Line-Caught Fish: tropical reef species (FRDC 2003/019). Report. Department of Primary Industries and Fisheries.

Russ, Garry R., Cheal, Alistair J., Dolman, Andrew M., Emslie, Michael J., Evans, Richard D., Miller, Ian, Sweatman, Hugh, and Williamson, David H. (2008) Rapid increase in fish numbers follows creation of world's largest marine reserve network. Current Biology, 18 (12). pp. 514-515.

Yeiser, B.G., Heupel, M.R., and Simpfendorfer, C.A. (2008) Occurrence, home range and movement patterns of juvenile bull (Carcharhinus leucas) and lemon (Negaprion brevirostris) sharks within a Florida estuary. Marine and Freshwater Research, 59 (6). pp. 489-501.

Frisch, Ashley J. (2008) Social organisation and den utilisation of painted spiny lobster (Panulirus versicolor) on a coral reef at Northwest Island, Australia. Marine and Freshwater Research, 59 (6). pp. 521-528.

Donelson, Jennifer M., McCormick, Mark I., and Munday, Philip (2008) Parental condition affects early life-history of a coral reef fish. Journal of Experimental Marine Biology and Ecology, 360 (2). pp. 109-116.

Fielder, D. Stewart, Allan, Geoff L., and Pankhurst, Patricia M. (2008) Comparison of two environmental regimes for culture of Australian snapper, Pagrus auratus, larvae in commercial-scale tanks. Journal of the World Aquaculture Society, 39 (3). pp. 364-374.

Sussman, Meir, Willis, Bette L., Victor, Steven, and Bourne, David G. (2008) Coral pathogens identified for white syndrome (WS) epizootics in the Indo-Pacific. Public Library of Science ONE , 3 (6). pp. 1-14.

Mapleston, Amos, Welch, David, Begg, Gavin A., McLennan, Mark, Mayer, David, and Brown, Ian (2008) Effect of changes in hook pattern and size on catch rate, hooking location, injury and bleeding for a number of tropical reef fish species. Fisheries Research, 91 (2-3). pp. 203-211.

McCormick, Mark I., and Larson, Johan K. (2008) Effect of hunger on the response to, and the production of, chemical alarm cues in a coral reef fish. Animal Behaviour, 75 (6). pp. 1973-1980.

Page, C.A., and Willis, B.L. (2008) Epidemiology of skeletal eroding band on the Great Barrier Reef and the role of injury in the initiation of this widespread coral disease. Coral Reefs, 27 (2). pp. 257-272.

Johansen, J.L., Bellwood, D.R., and Fulton, C.J. (2008) Do coral reef fishes exploit flow refuges in high-flow habitats. Marine Ecology Progress Series, 360. pp. 219-226.

Bonaldo, Roberta M., and Bellwood, David R. (2008) Size-dependent variation in the functional role of the parrotfish Scarus rivulatus on the Great Barrier Reef, Australia. Marine Ecology Progress Series, 360. pp. 237-244.

Jerry, Dean R. (2008) Phylogeography of the freshwater catfish Tandanus tandanus (Plotosidae): a model species to understand evolution of the eastern Australian freshwater fish fauna. Marine and Freshwater Research, 59 (4). pp. 351-360.

Ballagh, D.A., Pankhurst, P.M., and Fielder, D.S. (2008) Photoperiod and feeding interval requirements of juvenile mulloway, Argyrosomus japonicus. Aquaculture, 277 (1-2). pp. 52-57.

Wolanski, Eric, Fabricius, Katharina E., Cooper, Timothy F., and Humphrey, Craig (2008) Wet season fine sediment dynamics on the inner shelf of the Great Barrier Reef. Estuarine, Coastal and Shelf Science , 77 (4). pp. 755-762.

Mendell, Jennifer E., Clements, Kendall D., Choat, J. Howard, and Angert, Esther R. (2008) Extreme polyploidy in a large bacterium. Proceedings of the National Academy of Sciences of the United States of America, 105 (18). pp. 6730-6734.

Wong, Marian Y.L., Munday, Philip L., Buston, Peter, and Jones, Geoffrey P. (2008) Fasting or feasting in a fish social hierarchy. Current Biology, 18 (9). R372-R373.

Verges, Adriana, Paul, Nicholas A., and Steinberg, Peter D. (2008) Sex and life-history stage alter herbivore responses to a chemically defended red alga. Ecology, 89 (5). pp. 1334-1343.

Penfold, Rose, Grutter, Alexandra S., Kuris, Armand M., McCormick, Mark I., and Jones, Cornor M. (2008) Interactions between juvenile marine fish and gnathiid isopods: predation versus micropredation. Marine Ecology Progress Series, 357. pp. 111-119.

Fox, Rebecca J., and Bellwood, David R. (2008) Direct versus indirect methods of quantifying herbivore grazing impact on a coral reef. Marine Biology, 154 (2). pp. 325-334.

Steger, Doris, Ettinger-Epstein, Piers, Whalan, Stephen, Hentschel, Ute, de Nys, Rocky, Wagner, Michael, and Taylor, Michael W. (2008) Diversity and mode of transmission of ammonia-oxidizing archaea in marine sponges. Environmental Microbiology, 10 (4). pp. 1087-1094.

Hoogenboom, Mia O., Connolly, Sean R., and Anthony, Kenneth R.N. (2008) Interactions between morphological and physiological plasticity optimize energy acquisition in corals. Ecology, 89 (4). pp. 1144-1154.

Welch, David J., Mapstone, Bruce D., and Begg, Gavin A. (2008) Spatial and temporal variation and effects of changes in management in discard rates from the commercial reef line fishery of the Great Barrier Reef, Australia. Fisheries Research, 90 (1-3). pp. 247-260.

McGinty, Erin L., Smith-Keune, Carolyn, and Jerry, Dean R. (2008) A high through-put protocol for quantifying nucleic acids in individual microcrustaceans using new generation RNA and DNA specific dyes. Journal of Shellfish Research, 27 (2). pp. 449-455.

Milione, Michael, and Zeng, Chaoshu (2008) The effects of temperature and salinity on population growth and egg hatching success of the tropical calanoid copepod, Acartia sinjiensis. Aquaculture, 275 (1-4). pp. 116-123.

Maynard, Jeff A., Turner, Peter, Anthony, Kenneth R.N., Baird, Andrew H., Berkelmans, Ray, Eakin, C. Mark, Johnson, Johanna, Marshall, Paul A., Packer, Gareck R., Rea, Anthony, and Willis, Bette L. (2008) ReefTemp: an interactive monitoring system for coral bleaching using high-resolution SST and improved stress predictors. Geophysical Research Letters, 35. pp. 1-5.

Simpfendorfer, Colin Ashley, Heupel, Michelle RaNae, and Collins, Angela B. (2008) Variation in the performance of acoustic receivers and its implication for positioning algorithms in a riverine setting. Canadian Journal of Fisheries and Aquatic Sciences, 65 (3). pp. 482-492.

Evans, R.D., Russ, G.R., and Kritzer, J.P. (2008) Batch fecundity of Lutjanus carponotatus (Lutjanidae) and implications of no-take marine reserves on the Great Barrier Reef, Australia. Coral Reefs, 27 (1). pp. 179-189.

Richards, Zoe T., Beger, Maria, Pinca, Silvia, and Wallace, Carden C. (2008) Bikini Atoll coral biodiversity resilience five decades after nuclear testing. Marine Pollution Bulletin, 56 (3). pp. 503-515.

Hoey, A. S., and Bellwood, D. R. (2008) Cross-shelf variation in the role of parrotfishes on the Great Barrier Reef. Coral Reefs, 27 (1). pp. 37-47.

Cooper, Timothy F., De'Ath, Glenn, Fabricius, Katharina E., and Lough, Janice M. (2008) Declining coral calcification in massive Porites in two nearshore regions of the northern Great Barrier Reef. Global Change Biology, 14 (3). pp. 529-538.

Fabricius, Katharina E., De'Ath, Glenn, Puotinen, Marji Lee, Done, Terry, Cooper, Timothy F., and Burgess, Scott C. (2008) Disturbance gradients on inshore and offshore coral reefs caused by a severe tropical cyclone. Limnology and Oceanography, 53 (2). pp. 690-704.

Konow, Nicolai, Bellwood, David R., Wainwright, Peter C., and Kerr, Alexander M. (2008) Evolution of novel jaw joints promote trophic diversity in coral reef fishes. Biological Journal of the Linnean Society, 93 (3). pp. 545-555.

Smith-Keune, C., and Dove, S. (2008) Gene expression of a green fluorescent protein homolog as a host-specific biomarker of heat stress within a reef-building coral. Marine Biotechnology, 10 (2). pp. 166-180.

Wilson, Shaun K., Burgess, Scott C., Cheal, Alistair J., Emslie, Mike, Fisher, Rebecca, Miller, Ian, Polunin, Nicholas V.C., and Sweatman, Hugh P.A. (2008) Habitat utilization by coral reef fish: implications for specialists vs. generalists in a changing environment. Journal of Animal Ecology, 77 (2). pp. 220-228.

Wong, Marian Y.L., Munday, Philip L., Buston, Peter M., and Jones, Geoffrey P. (2008) Monogamy when there is potential for polygyny: tests of multiple hypotheses in a group-living fish. Behavioral Ecology, 19 (2). pp. 353-361.

McCormick, M. I., and Manassa, R. (2008) Predation risk assessment by olfactory and visual cues in a coral reef fish. Coral Reefs, 27 (1). pp. 105-113.

Hamilton, R.J., Adams, S., and Choat, J.H. (2008) Sexual development and reproductive demography of the green humphead parrotfish (Bolbometopon muricatum) in the Solomon Islands. Coral Reefs, 27 (1). pp. 153-163.

Frisch, A.J., Baker, R., Hobbs, J-P. A., and Nankervis, L. (2008) A quantitative comparison of recreational spearfishing and linefishing on the Great Barrier Reef: implications for management of multi-sector coral reef fisheries. Coral Reefs, 27 (1). pp. 85-95.

Wellenreuther, Maren, Syms, Craig, and Clements, Kendall D. (2008) Consistent spatial patterns across biogeographic gradients in temperate reef fishes. Ecography, 31 (1). pp. 84-94.

Bourne, David G., Boyett, Holly V., Henderson, Meegan E., Muirhead, Andrew, and Willis, Bette L. (2008) Identification of a ciliate (Oligohymenophorea: Scuticociliatia) associated with brown band disease on corals of the Great Barrier Reef. Applied and Environmental Microbiology, 74 (3). pp. 883-888.

Lee, Anne M., Williams, Ashley J., and Southgate, Paul C. (2008) Modelling and comparison of growth of the silver-lip pearl oyster Pinctada maxima (Jameson) (Mollusca: Pteriidae) cultured in West Papua, Indonesia. Marine and Freshwater Research, 59. pp. 22-31.

Scardino, A.J., Guenther, J., and de Nys, R. (2008) Attachment point theory revisited: the fouling response to a microtextured matrix. Biofouling, 24 (1). pp. 45-53.

Harold, Antony S., Winterbottom, Richard, Munday, Philip L., and Chapman, Robert W. (2008) Phylogenetic relationships of Indo-Pacific coral gobies of the genus Gobiodon (Teleostei: Gobiidae) based on morphological and molecular data. Bulletin of Marine Science, 82 (1). pp. 119-136.

Ettinger-Epstein, Piers, Tapiolas, Dianne M., Motti, Cherie A., Wright, Anthony D., Battershill, Christopher N., and de Nys, Rocky (2008) Production of manoalide and its analogues by the sponge Luffariella variabilis is hardwired. Marine Biotechnology, 10 (1). pp. 64-74.

Skindersoe, Mette Elena, Ettinger-Epstein, Piers, Rasmussen, Thomas Bovbjerg, Bjarnsholt, Thomas, de Nys, Rocky, and Givskov, Michael (2008) Quorum sensing antagonism from marine organisms. Marine Biotechnology, 10 (1). pp. 56-63.

Jegatheesan, V., Steicke, C., Pulefou, T., Zeng, C., and Shu, L. (2008) Recirculating aquaculture systems (RAS): performance of granular media filtration and membrane bioreactors. Journal of Science, Technology and Management, 1 (1). pp. 31-45.

Chin, Andrew, Sweatman, Hugh, Forbes, Susan, Perks, Helen, Walker, Ryan, Jones, Geoff, Williamson, David, Evans, Richard, Hartley, Fraser, Armstrong, Shannon, Malcolm, Hamish, and Edgar, Graham (2008) 2008 Status of the coral reefs in Australia and Papua New Guinea. In: Wilkinson, Clive, (ed.) Status of Coral Reefs of the World: 2008. Global Coral Reef Monitoring Network, Townsville, QLD, Australia, pp. 159-176.

Evans, R.D. (2008) Assessment of an underwater biopsy probe for collecting teleost fish tissue samples. Marine Ecology Progress Series, 368. pp. 305-308.

de Nys, Rocky, and Ison, Odette (2008) Biofouling. In: Southgate, Paul C., and Lucas, John S., (eds.) The Pearl Oyster. Elsevier, Oxford, UK, pp. 527-553.

Romano, Nicholas, and Zeng, Chaoshu (2008) Blue swimmer crabs: emerging species in Asia. Global Aquaculture Advocate, 11 (3). pp. 34-36.

Birrell, Chico L., McCook, Laurence J., Willis, Bette L., and Harrington, Lindsay (2008) Chemical effects of macroalgae on larval settlement of the broadcast spawning coral Acropora millepora. Marine Ecology Progress Series, 362. pp. 129-137.

Hobbs, J.-P.A, and Salmond, J.K. (2008) Cohabitation of Indian and Pacific Ocean species at Christmas and Cocos (Keeling) Islands. Coral Reefs, 27 (4). p. 933.

Heupel, M.R., Williams, A.J., Welch, D.J., Mapstone, B.D., Ballagh, A., and Simpfendorfer, C.A. (2008) Compilation of information on the interaction of reef sharks with the reef line fishery in the Great Barrier Reef Marine Park: final report to the Great Barrier Reef Marine Park Authority. Report. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia.

Thomas, Séverine, and Anthony, Shelley L. (2008) The Coral Reef Exhibit at Reef HQ Aquarium, Townsville, Australia, Technical Operations and Water Quality. Report. Burgers' Zoo, Arnhem, Netherlands.

Syms, C., and Kingsford, M.J. (2008) Coral reef habitats and assemblages. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 40-50.

Ceccarelli, D., Choat, J.H., Ayling, A., Richards, Z.T., Van Herwerden, L., Ewel, G.D., Hobbs, J-P., and Cuff, B. (2008) Coringa-Herald National Nature Reserve Marine Survey 2007. Report. Department of the Environment, Water, Heritage and the Arts, Canberra, ACT, Australia.

Jones, David, Jerry, Dean, McCormick, Mark, and Bay, Line (2008) Development of nine microsatellite markers for Pomacentrus amboinensis. Molecular Ecology Resources, 8 (6). pp. 1332-1334.

Gagliano, Monica, Depczynski, Martial, Simpson, Stephen D., and Moore, James A.Y. (2008) Dispersal without errors: symmetrical ears tune into the right frequency for survival. Proceedings of the Royal Society of London Series B, Biological Sciences, 275 (1634). pp. 527-534.

Beer, Andrew C., and Southgate, Paul C. (2008) Effect of mesh coverings on retention and growth of blacklip pearl oyster (Pinctada margaritifera) spat during early nursery culture. Aquatic Living Resources, 21 (4). pp. 441-445.

Birrell, Chico L., McCook, Laurence J., Willis, Bette L., and Diaz-Pulido, Guillermo A. (2008) Effects of benthic algae on the replenishment of corals and the implications for the resilience of coral reefs. Oceanography and Marine Biology: an annual review, 46. pp. 25-63.

Pratchett, Morgan S., Munday, Philip L., Wilson, Shaun K., Graham, Nicholas A.J., Cinner, Joshua E., Bellwood, David R., Jones, Geoffrey P., Polunin, Nicholas V.C., and McClanahan, Tim R. (2008) Effects of climate-induced coral bleaching on coral-reef fishes - ecological and economic consequences. Oceanography and Marine Biology: an annual review, 46. pp. 251-296.

Munday, P. L., Kingsford, M.J., O'Callaghan, M., and Donelson, J.M. (2008) Elevated temperature restricts growth potential of the coral reef fish Acanthochromis polyacanthus. Coral Reefs, 27 (4). pp. 927-931.

Southgate, Paul C., Strack, Elisabeth, Hart, Anthony, Wada, Katsuhiko T., Monteforte, Mario, Cariño , Micheline, Langy, Sandra, Lo, Cedrik, Acosta-Salmon, Hector, and Wang, Aimin (2008) Exploitation and culture of major commercial species. In: Southgate, Paul C., and Lucas, John S., (eds.) The Pearl Oyster. Elsevier, Oxford, UK, pp. 303-355.

Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove (2008) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, NSW, Australia.

Whalan, S., de Nys, R., Smith-Keune, C., Evans, B.S., Battershill, C., and Jerry, D.R. (2008) Low genetic variability within and among populations of the brooding sponge Rhopaloeides odorabile on the central Great Barrier Reef. Aquatic Biology, 3 (2). pp. 111-119.

Dinsdale, Elizabeth A., Pantos, Olga, Smriga, Steven, Edwards, Robert A., Angly, Florence, Wegley, Linda, Hatay, Mark, Hall, Dana, Brown, Elysa, Haynes, Matthew, Krause, Lutz, Sala, Enric, Sandin, Stuart A., Thurber, Rebecca Vega, Willis, Bette L., Azam, Farooq, Knowlton, Nancy, and Rohwer, Forest (2008) Microbial ecology for four coral atolls in the Northern Line Islands. PLoS Biology, 3 (2). pp. 1-17.

de Santis, Christian, Evans, Brad S., Smith-Keune, Carolyn, and Jerry, Dean R. (2008) Molecular characterization, tissue expression and sequence variability of the barramundi (Lates calcarifer) myostatin gene. BMC Genomics, 9. pp. 82-96.

Anthony, S.L., Page, C.A., Bourne, D.G., and Willis, B.L. (2008) Newly characterized distinct phases of the coral disease 'atramentous necrosis' on the Great Barrier Reef. Diseases of Aquatic Organisms, 81 (3). pp. 255-259.

Gagliano, Monica (2008) On the spot: the absence of predators reveals eyespot plasticity in a marine fish. Behavioral Ecology, 19 (4). pp. 733-739.

Kingsford, M.J., Heimann, K., Alexander, C.G., and McKinnon, A.D. (2008) Plankton. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 129-144.

Wada, Katsuhiko T., and Jerry, Dean R. (2008) Population genetics and stock improvement. In: Southgate, Paul C., and Lucs, John S., (eds.) The Pearl Oyster. Elsevier, Oxford, UK, pp. 437-471.

Saucedo, Pedro E., and Southgate, Paul C. (2008) Reproduction, development and growth. In: Southgate, Paul C., and Lucas, John S., (eds.) The Pearl Oyster. Elsevier, Oxford, UK, pp. 131-186.

Bellwood, David R., and Fulton, Christopher J. (2008) Sediment-mediated suppression of herbivory on coral reefs: decreasing resilience to rising sea levels and climate change. Limnology and Oceanography, 53 (6). pp. 2695-2701.

Richards, Zoe T., van Oppen, Madeleine J.H., Wallace, Carden C., Willis, Bette L., and Miller, David J. (2008) Some rare Indo-Pacific coral species are probable hybrids. Public Library of Science ONE , 3 (9). pp. 1-8.

Morote, Elvira, Olivar, M. Pilar, Pankhurst, Patricia M., Villate, Fernando, and Uriarte, Ibon (2008) Trophic ecology of bullet tuna Auxis rochei larvae and ontogeny of feeding-related organs. Marine Ecology Progress Series, 353. pp. 243-254.

Hobbs, J.P., Choat, J.H., Robbins, W.D., Van Herwerden, Lynne, Feary, D.A., and Ayling, Anthony (2008) Unique fish assemblages at world's southernmost oceanic coral reefs, Elizabeth and Middleton Reefs, Tasman Sea, Australia. Coral Reefs, 27 (1). p. 15.

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Hobbs, J.-P., and Munday, P.L. (2004) Intraspecific competition controls spatial distribution and social organisation of the coral-dwelling goby Gobiodon histrio. Marine Ecology Progress Series, 278. pp. 253-259.

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Genodepa, Jerome, Zeng, Chaoshu, and Southgate, Paul C. (2004) Preliminary assessment of a microbound diet as an Artemia replacement for mud crab, Scylla serrata, megalopa. Aquaculture, 236 (1-4). pp. 497-509.

Little, Angela F., van Oppen, Madeleine J.H., and Willis, Bette (2004) Flexibility in algal endosymbioses shapes growth in reef corals. Science, 304 (5676). pp. 1492-1494.

Nardi, K., Jones, G.P., Moran, M.J., and Cheng, Y.W. (2004) Contrasting effects of marine protected areas on the abundance of two exploited fishes at the sub-tropical Houtman Abrolhos Islands, Western Australia. Environmental Conservation, 31 (2). pp. 160-168.

Williamson, D.H., Russ, G.R., and Ayling, A.M. (2004) No-take marine reserves increase abundance and biomass of reef fish on inshore fringing reefs of the Great Barrier Reef. Environmental Conservation, 31 (2). pp. 149-159.

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Wainwright, Peter, Bellwood, David R., Westneat, Mark W., Grubich, Justin R., and Hoey, Andrew S. (2004) A Functional morphospace for the skull of labrid fishes: patterns of diversity in a complex biomechanical system. Biological Journal of the Linnean Society, 82 (1). pp. 1-25.

Ackerman, John L., Bellwood, David R., and Brown, James H. (2004) The contribution of small individuals to density-body size relationships: examination of energetic equivalence in reef fishes. Oecologia, 139 (4). pp. 568-571.

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Gristina, Michele, and Gagliano, Monica (2004) Performance of traditional rush and modern plastic traps on the capture of Palinurus elephas (Fabricius, 1787) in laboratory tanks. Fisheries Research, 67 (2). pp. 235-239.

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Hoey, Andrew S., and McCormick, Mark I. (2004) Selective predation for low body condition at the larval-juvenile transition of a coral reef fish. Oecologia, 139 (1). pp. 23-29.

Munday, Philip L., Parker, Alyson L., Choat, J. Howard, and Gust, Nick (2004) Sex-specific growth effects in protogynous hermaphrodites. Canadian Journal of Fisheries and Aquatic Sciences, 61 (3). pp. 323-327.

Wolstenholme, Jackie (2004) Temporal reproductive isolation and gametic compatibility are evolutionary mechanisms in the Acropora humilis species group (Cnidaria; Scleractinia). Marine Biology, 144 (3). pp. 567-582.

Fulton, C.J., and Bellwood, D.R. (2004) Wave exposure, swimming performance, and the structure of tropical and temperate reef fish assemblages. Marine Biology, 144 (3). pp. 429-437.

Acosta-Salmon, Hector, Martinez-Fernandez, Erika, and Southgate, Paul C. (2004) A new approach to pearl oyster broodstock selection: can saibo donors be used as future broodstock? Aquaculture, 231 (1 - 4). pp. 205-214.

Beukers-Stewart, B.D., and Jones, G.P. (2004) The influence of prey abundance on the feeding ecology of two piscivorous species of coral reef fish. Journal of Experimental Marine Biology and Ecology, 299 (2). pp. 155-184.

Green, Bridget S., and Fisher, Rebecca (2004) Temperature influences swimming speed, growth and larval duration in coral reef fish larvae. Journal of Experimental Marine Biology and Ecology, 299 (1). pp. 115-132.

McClanahan, T.R., Baird, A.H., Marshall, P.A., and Toscano, M.A. (2004) Comparing bleaching and mortality responses of hard corals between southern Kenya and the Great Barrier Reef, Australia. Marine Pollution Bulletin, 48 (3). pp. 327-335.

Genodepa, Jerome, Southgate, Paul C., and Zeng, Chaoshu (2004) Diet particle size preference and optimal ration for mud crab, Scylla serrata, larvae fed microbound diets. Aquaculture, 230 (1-4). pp. 493-505.

Bellwood, David , and Hoey, Andrew (2004) Feeding in Mesozoic fishes: a functional perspective. In: Arratia, Gloria, and Tintori, Andrea, (eds.) Mesozoic Fishes 3: systematics, paleoenvironments and biodiversity. Mesozoic Fishes, 3 . Verlag Dr. Friedrich Pfeil, Munchen, Germany, pp. 639-649.

Cruz-Motta, J.J., and Collins, J. (2004) Impacts of dredged material disposal on a tropical soft-bottom benthic assemblage. Marine Pollution Bulletin, 48 (3). pp. 270-280.

Schultz, Ortwin, and Bellwood, David R. (2004) Trigonodon oweni and Asima jugleri are different parts of the same species Trigonodon jugleri, a Chiseltooth Wrasse for the Lower and Middle Miocene in Central Europe (Osteichthyes, Labridae, Trigonodontinae). Annalen des Naturhistorischen Museums in Wien Serie A, 105. pp. 287-305.

Gust, Nick (2004) Variation in the population of protogynous coral reef fishes over tens of kilometres. Canadian Journal of Fisheries and Aquatic Sciences, 61 (2). pp. 205-218.

Walker, Stefan P.W., and McCormick, Mark I. (2004) Otolith-check formation and accelerated growth associated with sex change in an annual protogynous tropical fish. Marine Ecology Progress Series, 266. pp. 201-212.

Nilsson, Goran E., Hobbs, Jean-Paul, Munday, Philip L., and Ostlund-Nilsson, Sara (2004) Coward or braveheart: extreme habitat fidelity through hypoxia tolerance in a coral-dwelling goby. Journal of Experimental Biology, 207 (1). pp. 33-39.

Eagle, Janelle V., and Jones, Geoffrey P. (2004) Mimicry in coral reef fishes: ecological and behavioural responses of a mimic to its model. Journal of Zoology, 264 (1). pp. 33-43.

Mackenzie, J.B., Munday, P.L., Willis, B.L., Miller, D.J., and van Oppen, M.J.H. (2004) Unexpected patterns of genetic structuring among locations but not colour morphs in Acropora nasuta (Cnidaria; Scleractinia). Molecular Ecology, 13 (1). pp. 9-20.

Willis, Bette L., Page, Cathie A., and Dinsdale, Elizabeth A. (2004) Coral disease on the Great Barrier Reef. In: Rosenberg, Eugene, and Loya, Yossi, (eds.) Coral Health and Disease. Springer, Berlin, Germany, pp. 69-104.

Wilson, Shaun K. (2004) Growth, mortality and turnover rates of a small detritivorous fish. Marine Ecology Progress Series, 284. pp. 253-259.

Zeng, Chaoshu, Li, Shaojing, and Zeng, Hui (2004) Occurrence of additional Zoea-VI larvae in the mud crab, Scylla paramamosain (Estampador), reared in the laboratory. Hydrobiologia, 529 (1-3). pp. 49-58.

Jerry, D. R., Preston, N., Crocos, P. J., Keys, S., Meadows, J. R. S., and Li, Y. (2004) Parentage determination of Kuruma prawn shrimp Penaeus (Marsupenaeus) japonicus using microsatellite markers. Aquaculture, 235 (1-4). pp. 237-247.

Nguyen, T. T. T., Austin, C. M., Meewan, M. M., Schultz, M. B., and Jerry, D. R. (2004) Phylogeography of the freshwater crayfish Cherax destructor Clark (Parastacidae) in inland Australia: historical fragmentation and recent range expansion. Biological Journal of the Linnean Society, 83 (4). pp. 539-550.

Houston, Wayne, Porter, Gary, Elder, Rod, Black, Robert, and Sheaves, Marcus (2004) Rediscovery of yellow chats (Capricorn Subspecies) on the Fitzroy River Delta Central Queensland. Sunbird, 34 (1). pp. 36-42.

Kritzer, Jacob P. (2004) Sex-specific growth and mortality, spawning season, and female maturation of the Stripey bass (Lutjanus carponotatus) on the Great Barrier Reef. Fishery Bulletin, 102 (1). pp. 94-107.

Claydon, John (2004) Spawning aggregations of coral reef fishes: characteristics, hypotheses, threats and management. Oceanography and Marine Biology: an annual review, 42. pp. 265-301.

Zeidler, Wolfgang, and Gershwin, Lisa-Ann (2004) A new species of Australomedusa (Cnidaria: Hydrozoa: Anthomedusae) from a saline lake in south-western Western Australia. Records of the Western Australian Museum, 22 (2). pp. 109-113.

Elliott, J.P., and Bellwood, D.R. (2003) Alimentary tract morphology and diet in three coral reef fish families. Journal of Fish Biology, 63 (6). pp. 1598-1609.

Munday, Philip L., Eyre, Peter J., and Jones, Geoffrey P. (2003) Ecological mechanisms for coexistence of colour polymorphism in a coral-reef fish: an experimental evaluation. Oecologia, 137 (4). pp. 519-526.

Russ, Garry R., and Alcala, Angel C. (2003) Marine reserves: rates and patterns of recovery and decline of predatory fish, 1983-2000. Ecological Applications, 13 (6). pp. 1553-1565.

Pit, Josiah H., and Southgate, Paul C. (2003) Should slow growing pearl oyster (Pinctada margaritifera) spat (Runts) be discarded? Journal of Shellfish Research, 22 (3). pp. 773-775.

Dartnall, Alan J., Byrne, Maria, Collins, John, and Hart, Michael W. (2003) A new viviparous species of asterinid (Echinodermata, Asteroidea, Asterinidae) and a new genus to accommodate the species of pantropical exiguoid sea stars. Zootaxa, 359. pp. 1-14.

Caley, M. Julian, and Munday, Philip L. (2003) Growth trades off with habitat specialization. Proceedings of the Royal Society of London Series B, Biological Sciences, 270 (52). pp. 175-177.

Klanten, Selma O., Van Herwerden, Lynne, and Choat, J. Howard (2003) Acquiring reef fish DNA sequences from formalin-fixed museum specimens. Bulletin of Marine Science, 73 (3). pp. 771-776.

Pit, Josiah H., and Southgate, Paul C. (2003) Fouling and predation; how do they affect growth and survival of the blacklip pearl oyster, Pinctada margaritifera, during nursery culture? Aquaculture International, 11 (6). pp. 545-555.

Connolly, Sean R., and Muko, Soyoka (2003) Space preemption, size-dependent competition, and the coexistence of clonal growth forms. Ecology, 84 (11). pp. 2979-2988.

Kavanagh, Kathryn D., and Alford, Ross A. (2003) Sensory and skeletal development and growth in relation to the duration of the embryonic and larval stages in damselfishes (Pomacentridae). Biological Journal of the Linnean Society, 80 (2). pp. 187-206.

Pitt, Kylie. A, and Kingsford, Michael J. (2003) Temporal variation in the virgin biomass of the edible jellyfish, Catostylus mosaicus (Scyphozoa, Rhizostomeae). Fisheries Research, 63 (3). pp. 303-313.

Dempster, Tim, and Kingsford, Michael J. (2003) Homing of pelagic fish to fish aggregation devices (FADs): the role of sensory cues. Marine Ecology Progress Series, 258. pp. 213-222.

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Pandolfi, John M., Bradbury, Roger H., Sala, Enric, Hughes, Terry, Bjorndal, Karen A., Cooke, Richard G., McArdle, Deborah, McClenachan, Loren, Newman, Marah J.H., Paredes, Gustavo, Warner, Robert R., and Jackson, Jeremy B.C. (2003) Global trajectories of the long-term decline of coral reef ecosystems. Science, 301 (5635). pp. 955-958.

Connolly, Sean R., Bellwood, David R., and Hughes, Terence P. (2003) Indo-Pacific biodiversity of coral Rreefs: deviations from a mid-domain model. Ecology, 84 (8). pp. 2178-2190.

Leuzinger, Sebastian, Anthony, Kenneth, and Willis, Bette L. (2003) Reproductive energy investment in corals: scaling with module size. Oecologia, 136 (4). pp. 524-531.

Gillanders, B.M., and Kingsford, M.J. (2003) Spatial variation in elemental composition of otoliths of three species of fish (family Sparidae). Estuarine, Coastal and Shelf Science, 57 (5-6). pp. 1049-1064.

Schubert, Melissa, Munday, Philip L., Caley, M. Julian, Jones, Geoffrey P., and Llewellyn, Lyndon E. (2003) The toxicity of skin secretions from coral-dwelling gobies and their potential role as a predator deterrent. Environmental Biology of Fishes, 67 (2). pp. 359-367.

Wilson, Shaun K., Bellwood, David R., Choat, J. Howard, and Furnas, Miles J. (2003) Detritus in the epilithic algal matrix and its use by coral reef fishes. Oceanography and Marine Biology: an annual review, 41. pp. 279-309.

Wolstenholme, J.K., Wallace, C.C., and Chen, C.A. (2003) Species boundaries within the Acropora humilis species group (Cnidaria; Scleractinia): a morphological and molecular interpretation of evolution. Coral Reefs, 22 (2). pp. 155-166.

Zeller, D., Stoute, S.L., and Russ, G.R. (2003) Movements of reef fishes across marine reserve boundaries: effects of manipulating a density gradient. Marine Ecology Progress Series, 254. pp. 269-280.

McKinnon, A.D., Duggan, S., Nichols, P.D., Rimmer, M.A., Semmens, G., and Robino, B. (2003) The potential of tropical paracalanid copepods as live feeds in aquaculture. Aquaculture, 223 (1-4). pp. 89-106.

McCormick, Mark I. (2003) Consumption of coral propagules after mass spawning enhances larval quality of a damselfish through maternal effects. Oecologia, 136 (1). pp. 37-45.

Ackerman, John L., and Bellwood, David R. (2003) The contribution of small individuals to density-body size relationships. Oecologia, 136 (1). pp. 137-140.

Graham, N.A.J., Evans, R.D., and Russ, G.R. (2003) The effects of marine reserve protection on the trophic relationships of reef fishes on the Great Barrier Reef. Environmental Conservation, 30 (2). pp. 200-208.

Beger, Maria, Jones, Geoffrey P., and Munday, Philip L. (2003) Conservation of coral reef biodiversity: a comparison of reserve selection procedures for corals and fishes. Biological Conservation, 111 (1). pp. 53-62.

van Herwerden, L., Benzie, J., and Davies, Campbell (2003) Microsatellite variation and population genetic structure of the red throat emperor on the Great Barrier Reef. Journal of Fish Biology, 62 (5). pp. 987-999.

Baird, A.H., Babcock, R.C., and Mundy, C.P. (2003) Habitat selection by larvae influences the depth distribution of six common coral species. Marine Ecology Progress Series, 252. pp. 289-293.

van Herwerden, Lynne, Caley, M. Julian, and Blair, David (2003) Regulatory motifs are present in the ITS1 of some flatworm species. Journal of Experimental Zoology Part B: molecular and developmental evolution, 296 (1). pp. 80-86.

Russ, G.R. (2003) Grazer biomass correlates more strongly with production than with biomass of algal turfs on a coral reef. Coral Reefs, 22 (1). pp. 63-67.

Bellwood, David R., Hoey, Andrew S., and Choat, J. Howard (2003) Limited functional redundancy in high diversity systems: resilience and ecosystem function on coral reefs. Ecology Letters, 6 (4). pp. 281-285.

Munday, P.L., Schubert, M., Baggio, J.A., Jones, G.P., Caley, M.J., and Grutter, A.S. (2003) Skin toxins and external parasitism of coral-dwelling gobies. Journal of Fish Bio