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Anderson, R Charles, Herrera, Miguel, Ilangakoon, Anoukchika D., Koya, K.M., Moazzam, M., Mustika, Putu L., and Sutaria, Dipani N. (2020) Cetacean bycatch in Indian Ocean tuna gillnet fisheries. Endangered Species Research, 41. pp. 39-53.

Adams, Matthew P., Koh, Edwin J.Y., Vilas, Maria P., Collier, Catherine J., Lambert, Victoria M., Sisson, Scott A., Quiroz, Matias, McDonald-Madden, Eve, McKenzie, Len J., and O'Brien, Katherine R. (2020) Predicting seagrass decline due to cumulative stressors. Environmental Modelling & Software, 130. 104717.

Al Moajil-Cole, Grace (2019) Exploring the role of microbes in coral-algal interactions on the inshore Great Barrier Reef. Masters (Research) thesis, James Cook University.

Aihara, Yusuke, Maruyama, Shinichiro, Baird, Andrew H., Iguchi, Akira, Takahashi, Shunichi, and Minagawa, Jun (2019) Green fluorescence from cnidarian hosts attracts symbiotic algae. Proceedings of the National Academy of Sciences of the United States of America, 116 (6). pp. 2118-2123.

Andrade Rodríguez, Natalia Alexandra (2018) Non-contact competition between soft and hard corals: a transcriptomic perspective. PhD thesis, James Cook University.

Anderson, Kristen D., Cantin, Neal E., Heron, Scott F., Lough, Janice M., and Pratchett, Morgan S. (2018) Temporal and taxonomic contrasts in coral growth at Davies Reef, central Great Barrier Reef, Australia. Coral Reefs, 37 (2). pp. 409-421.

Anderson, Kristen D., Cantin, Neal E., Heron, Scott F., Pisapia, Chiara, and Pratchett, Morgan S. (2017) Variation in growth rates of branching corals along Australia's Great Barrier Reef. Scientific Reports, 7. 2920. pp. 1-13.

Asson, Danielle, Chapman, John W., and Dumbauld, Brett R. (2017) No evidence that the introduced parasite Orthione griffenis markham, 2004 causes sex change or differential mortality in the native mud shrimp, Upogebia pugettensis (Dana, 1852). Aquatic Invasions, 12 (2). pp. 213-224.

Adams, Matthew P., Collier, Catherine J., Uthicke, Sven, Ow, Yan X., Langlois, Lucas, and O'brien, Katherine R. (2017) Model fit versus biological relevance: evaluating photosynthesis-temperature models for three tropical seagrass species. Scientific Reports, 7. 39930. pp. 1-12.

Andrello, Marco, Guilhaumon, François, Albouy, Camille, Parravicini, Valeriano, Scholtens, Joeri, Verley, Philippe, Barange, Manuel, Sumaila, U. Rashid, Manel, Stéphanie, and Mouillot, David (2017) Global mismatch between fishing dependency and larval supply from marine reserves. Nature Communications, 8. 16039.

Atherton, Jennifer Ann, and McCormick, Mark Ian (2017) Kin recognition in embryonic damselfishes. Oikos, 126 (7). pp. 1062-1069.

Ainsworth, T.D., Fordyce, A.J., and Camp, E.F. (2017) The other microeukaryotes of the coral reef microbiome. Trends in Microbiology, 25 (12). pp. 980-991.

Aschenbroich, Adélaïde, Michaud, Emma, Stieglitz, Thomas, Fromard, Francois, Gardel, Antoine, Tavares, Marcos, and Thouzeau, Gérard (2016) Brachyuran crab community structure and associated sediment reworking activities in pioneer and young mangroves of French Guiana, South America. Estuarine, Coastal and Shelf Science, 182 (Part A). pp. 60-71.

Adjeroud, Mehdi, Wallace, Carden C., Bosserelle, Pauline, Payri, Claude, Menou, Jean-Louis, and Pichon, Michel (2016) Reefs at the edge: coral community structure around Rapa, southernmost French Polynesia. Marine Ecology, 37 (3). pp. 565-575.

Angly, Florent E., Pantos, Olga, Morgan, Thomas C., Rich, Virginia, Tonin, Hemerson, Bourne, David G., Mercurio, Philip, Negri, Andrew P., and Tyson, Gene W. (2016) Diuron tolerance and potential degradation by pelagic microbiomes in the Great Barrier Reef lagoon. PeerJ, 4. e1758. pp. 1-23.

Angly, Florent E., Heath, Candice, Morgan, Thomas C., Tonin, Hemerson, Rich, Virginia, Schaffelke, Britta, Bourne, David G., and Tyson, Gene W. (2016) Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events. PeerJ, 4. e1511. pp. 1-24.

Amor, Michael D., Norman, Mark D., Roura, Alvaro, Leite, Tatiana S., Gleadall, Ian G., Reid, Amanda, Perales-Raya, Catalina, Lu, Chung-Cheng, Silvey, Colin J., Vidal, Erica A.G., Hochberg, Frederick G., Zheng, Xiaodong, and Strugnell, Jan M. (2016) Morphological assessment of the Octopus vulgaris species-complex evaluated in light of molecular-based phylogenetic inferences. Zoologica Scripta, 46 (3). pp. 275-288.

Andrews, Kimberly R., Williams, Ashley J., Fernandez-Silva, Iria, Newman, Steve J., Copus, Joshua M., Wakefield, Corey B., Randall, John E., and Bowen, Brian W. (2016) Phylogeny of deepwater snappers (Genus Etelis) reveals a cryptic species pair in the Indo-Pacific and Pleistocene invasion of the Atlantic. Molecular Phylogenetics and Evolution, 100. pp. 361-371.

Arrigoni, Roberto, Benzoni, Francesca, Huang, Danwei, Fukami, Hironobu, Chen, Chaolun Allen, Berumen, Michael L., Hoogenboom, Mia, Thompson, Damian, Hoeksema, Bert W., Budd, Ann F., Zayasu, Yuna, Terraneo, Tullia I., Kitano, Yuki F., and Baird, Andrew H. (2016) When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus. Contributions to Zoology, 85 (4). pp. 387-422.

Abesamis, Rene A., Jadloc, Claro Renato L., and Russ, Garry R. (2015) Varying annual patterns of reproduction in four species of coral reef fish in a monsoonal environment. Marine Biology, 162 (10). pp. 1993-2006.

Anderson, Kristen D., Heron, Scott F., and Pratchett, Morgan S. (2015) Species-specific declines in the linear extension of branching corals at a subtropical reef, Lord Howe Island. Coral Reefs, 34 (2). pp. 479-490.

Atherton, Jennifer Ann, and McCormick, Mark Ian (2015) Active in the sac: damselfish embryos use innate recognition of odours to learn predation risk before hatching. Animal Behaviour, 103. pp. 1-6.

Ainsworth, T.D., Knack, B., Ukani, L., Seneca, F., Weiss, Y., and Leggat, W. (2015) In situ hybridisation detects pro-apoptotic gene expression of a Bcl-2 family member in white syndrome-affected coral. Diseases of Aquatic Organisms, 117 (2). pp. 155-163.

Andrews, Allen H., Choat, John H., Hamilton, Richard J., and DeMartini, Edward E. (2015) Refined bomb radiocarbon dating of two iconic fishes of the Great Barrier Reef. Marine and Freshwater Research, 66 (4). pp. 305-316.

Ainsworth, Tracy D., Krause, Lutz, Bridge, Thomas, Torda, Gergely, Raina, Jean-Baptiste, Zakrzewski, Martha, Gates, Ruth D., Padilla-Gamino, Jacqueline L., Spalding, Heather L., Smith, Celia, Woolsey, Erika S., Bourne, David G., Bongaerts, Pim, Hoegh-Guldberg, Ove, and Leggat, Bill (2015) The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts. ISME Journal: multidisciplinary journal of microbial ecology, 9. pp. 2261-2274.

Atherton, Jennifer Ann (2015) The effect of parental and embryonic predator environments on offspring. PhD thesis, James Cook University.

Allan, Bridie Jean Marie (2015) The effects of climate change on predator-prey interactions in coral reef fish. PhD thesis, James Cook University.

Augé, A.A., Chilvers, B.L., Moore, A.B., and Davis, L.S. (2014) Importance of studying foraging site fidelity for spatial conservation measures in a mobile predator. Animal Conservation, 17 (1). pp. 61-71.

Amor, Michael D., Norman, Mark D., Cameron, Hayley E., and Strugnell, Jan M. (2014) Allopatric speciation within a cryptic species complex of Australasian octopuses. PLoS ONE, 9 (6). e98982. pp. 1-13.

Awruch, Cynthia A., Jones, Susan M., García Asorey, Martin, and Barnett, Adam (2014) Non-lethal assessment of the reproductive status of broadnose sevengill sharks (Notorynchus cepedianus) to determine the significance of habitat use in coastal areas. Conservation Physiology, 2 (1). cou013. pp. 1-14.

Anderson, Kristen D., and Pratchett, Morgan S. (2014) Variation in size-frequency distributions of branching corals between a tropical versus sub-tropical reef. Marine Ecology Progress Series, 502. pp. 117-128.

Almany, Glenn R., Hamilton, Richard J., Bode, Michael, Matawai, Manuai, Potuku, Tapas, Saenz-Agudelo, Pablo, Planes, Serge, Berumen, Michael L., Rhodes, Kevin L., Thorrold, Simon R., Russ, Garry R., and Jones, Geoffrey P. (2013) Dispersal of grouper larvae drives local resource sharing in a coral reef fishery. Current Biology, 23 (7). pp. 626-630.

Albright, Rebecca, and Mason, Benjamin (2013) Projected near-future levels of temperature and pCO2 reduce coral fertilization success. PLoS ONE, 8 (2). e56468. pp. 1-8.

Andrello, Marco, Mouillot, David, Beuvier, Jonathan, Albouy, Camille, Thuiller, Wilfried, and Manel, Stéphanie (2013) Low connectivity between Mediterranean marine protected areas: a biophysical modeling approach for the dusky grouper Epinephelus marginatus. PLoS ONE, 8 (7). e68564. pp. 1-15.

Albouy, Camille, Guilhaumon, François, Leprieur, Fabien, Lasram, Frida Ben Rais, Somot, Samuel, Aznar, Roland, Velez, Laure, Le Loc'h, Francois, and Mouillot, David (2013) Projected climate change and the changing biogeography of coastal Mediterranean fishes. Journal of Biogeography, 40 (3). pp. 534-547.

Augé, Amélie A., Maughan, Mirjam, Pressey, Robert L., Brodie, Jon, Dale, Allan, and Yorkston, Hugh (2013) Spatially explicit scenarios for conservation planning in the Great Barrier Reef coastal zone, Australia. In: Proceedings of the CoastGIS Conference 2013: monitoring and adapting to change on the coast. pp. 179-182. From: CoastGIS 2013: 11th International Symposium for GIS and Computer Cartography for Coastal Zone Management, 18-21 June 2013, Victoria, BC, Canada.

Awruch, C.A., Frusher, S.D., Stevens, J.D., and Barnett, A. (2012) Movement patterns of the draughtboard shark Cephaloscyllium laticeps (Scyliorhinidae) determined by passive tracking and conventional tagging. Journal of Fish Biology, 80 (5). pp. 1417-1435.

A'Hara, S.W., Amouroux, P., Argo, Emily E., Avand-Faghih, A., Barat, Ashoktaru, Barbieri, Luiz, Bert, Theresa M., Blatrix, R., Blin, Aurélie, Bouktila, D., Broome, A., Burban, C., Capdevielle-Dulac, C., Casse, N., Chandra, Suresh, Cho, Kyung Jin, Cottrell, J.E., Crawford, Charles R., Davis, Michelle C., Delatte, H., Desneux, Nicholas, Djieto-Lordon, C., Dubois, M.P., El-Mergawy, R.A.A.M., Gallardo-Escárate, C., Garcia, M., Gardner, Mary M., Guillemaud, Thomas, Haye, P.A., Hellemans, B., Hinrichsen, P., Jeon, Ji Hyun, Kerdelhué, C., Kharrat, I., Kim, Ki Hwan, Kim, Yong Yul, Kwan, Ye-Seul, Labbe, Ellen M., LaHood, Eric, Lee, Kyung Mi, Lee, Wan-Ok, Lee, Yat-Hung, Legoff, Isabelle, Li, H., Lin, Chung-Ping, Liu, S.S., Liu, Y.G., Long, D., Maes, G.E., Magnoux, E., Mahanta, Prabin Chnadra Mahanta, Makni, H., Makni, M., Malausa, Thibaut, Matura, Rakesh, McKey, D., McMillen-Jackson, Anne L., Méndez, M.A., Mezghani-Khemakhem, M., Michel, Andy P., Moran, Paul, Muriel-Cunha, Janice, Nibouche, S., Normand, F., Palkovacs, Eric P., Pande, Veena, Parmentier, K., Peccoud, J., Paitscheck, F., Puchulutegui, Cecilia, Ramos, R., Ravest, G., Richner, Heinz, Robbens, J., Rochat, D., Rousselet, J., Saladin, Verena, Sauve, M., Schlei, Ora, Schultz, Thomas F., Scobie, A.R., Segovia, N.I., Seyoum, Seifu, Silvain, J-F., Tabone, Elisabeth, Van Houdt, J.K.J., Van Damme, S.G., Volckaert, F.A.M., Wenburg, John, Willis, Theodore V., Won, Yong-Jin, Ye, N.H., Zhang, W., and Zhang, Y.X. (2012) Permanent genetic resources added to Molecular Ecology Resources Database 1 August 2011-30 September 2011. Molecular Ecology Resources, 12 (1). pp. 185-189.

Augé, A. A., Davis, L. S., Lalas, C., and Chilvers, B. L. (2012) Autumn diet of recolonising female New Zealand sea lions based at Otago Peninsula, South Island, New Zealand. New Zealand Journal of Marine and Freshwater Research, 46 (1). pp. 97-110.

Albertin, Caroline B., Bonnaud, Laure, Brown, C. Titus, Crookes-Goodson, Wendy J., da Fonseca, Rute R., Di Cristo, Carlo, Dilkes, Brian P., Edsinger-Gonzales, Eric, Freeman, Robert M., Hanlon, Roger T., Koenig, Kristen M., Lindgren, Annie R., Martindale, Mark Q., Minx, Patrick, Moroz, Leonid L., Noedl, Marie-Therese, Nyholm, Spencer V., Ogura, Atsushi, Pungor, Judit R., Rosenthal, Joshua J.C., Schwarz, Erich M., Shigeno, Shuichi, Strugnell, Jan M., Wollesen, Tim, Zhang, Guojie, and Ragsdale, Clifton W. (2012) Cephalopod genomics: a plan of strategies and organization. Standards in Genomic Sciences, 7 (1). pp. 175-188.

Albouy, Camille, Guilhaumon, François, Araujo, Miguel B., Mouillot, David, and Leprieur, Fabien (2012) Combining projected changes in species richness and composition reveals climate change impacts on coastal Mediterranean fish assemblages. Global Change Biology, 18 (10). pp. 2995-3003.

Abrego, David, Willis, Bette L., and van Oppen, Madeleine J.H. (2012) Impact of light and temperature on the uptake of algal symbionts by coral juveniles. PLoS ONE, 7 (11). e50311. pp. 1-9.

Auge, A. A., Moore, A. B., and Chilvers, B. L. (2012) Predicting interactions between recolonising marine mammals and fisheries: defining precautionary management. Fisheries Management and Ecology, 19 (5). pp. 426-433.

Allcock, A. Louise, and Strugnell, Jan M. (2012) Southern Ocean diversity: new paradigms from molecular ecology. Trends in Ecology & Evolution, 27 (9). pp. 520-528.

Aragones, Lemnuel V., Lawler, Ivan, Marsh, Helene, Domning, Daryl, and Hodgson, Amanda (2012) The role of sirenians in aquatic ecosystems. In: Hines, Ellen M., Reynolds III, John E., Aragones, Lemnuel V., Mignucci-Giannoni, Antonio A., and Marmotel, Miriam, (eds.) Sirenian Conservation. University Press of Florida, Florida USA, pp. 4-11.

Albouy, C., Guilhaumon, F., Villeger, S., Mouchet, M., Mercier, L., Culioli, J.M., Tomasini, J.A., Le Loc'h, F., and Mouillot, David (2011) Predicting trophic guild and diet overlap from functional traits: statistics, opportunities and limitations for marine ecology. Marine Ecology Progress Series, 436. pp. 17-28.

Andrello, Marco, Bevacqua, Daniele, Maes, Gregory E., and De Leo, Giulio A. (2011) An integrated genetic-demographic model to unravel the origin of genetic structure in European eel (Anguilla anguilla L.). Evolutionary Applications, 4 (4). pp. 517-533.

Augé, A.A., Chilvers, B.L., Moore, A.B., and Davis, L.S. (2011) Foraging behaviour indicates marginal marine habitat for New Zealand sea lions: remnant versus recolonising populations. Marine Ecology Progress Series, 432. pp. 247-256.

Ateweberhan, M., McClanahan, T.R., Graham, N.A.J., and Sheppard, C.R.C. (2011) Episodic heterogeneous decline and recovery of coral cover in the Indian Ocean. Coral Reefs, 30 (3). pp. 739-752.

Als, Thomas D., Hansen, Michael M., Maes, Gregory E., Castonguay, Martin, Riemann, Lasse, Aarestrup, Kim, Munk, Peter, Sparholt, Henrik, Hanel, Reinhold, and Bernatchez, Louis (2011) All roads lead to home: panmixia of European eel in the Sargasso Sea. Molecular Ecology, 20 (7). pp. 1333-1346.

Aeby, G.S., Bourne, D.G., Wilson, B., and Work, T.M. (2011) Coral diversity and the severity of disease outbreaks: a cross-regional comparison of Acropora White Syndrome in a species-rich region (American Samoa) with a species-poor region (Northwestern Hawaiian Islands). Journal of Marine Biology, 2011. 490198.

Allcock, A. Louise, Barratt, Iain, Eléaume, Marc, Linse, Katrin, Norman, Mark D., Smith, Peter J., Steinke, Dirk, Stevens, Darren W., and Strugnell, Jan M. (2011) Cryptic speciation and the circumpolarity debate: a case study on endemic Southern Ocean octopuses using the COI barcode of life. Deep-Sea Research Part II: topical studies in oceanography, 58 (1-2). pp. 242-249.

Abesamis, Rene A. (2011) Replenishment and connectivity of reef fish populations in the central Philippines. PhD thesis, James Cook University.

Allcock, A. Louise, Cooke, Ira R., and Strugnell, Jan M. (2011) What can the mitochondrial genome reveal about higher-level phylogeny of the molluscan class Cephalopoda? Zoological Journal of the Linnean Society, 161 (3). pp. 573-586.

Alva-Campbell, Yvette, Floeter, Sergio R., Robertson, D. Ross, Bellwood, David R., and Bernardi, Giacomo (2010) Molecular phylogenetics and evolution of Holacanthus angelfishes (Pomacanthidae). Molecular Phylogenetics and Evolution, 56 (1). pp. 456-461.

Anderson, Cynthia M., Aparicio, Gallego J., Atangana, Alain R., Beaulieu, Jean, Bruford, M.W., Cain, Forrest, Campos, T., Cariani, A., Carvalho, M.A., Chen, Nan, Chen, P.P., Clamens, A-L., Clark, Ann M., Coeur D'Acier, A., Connolly, Paul, Cordero-Rivera, Adolfo, Coughlan, James P., Cross, Thomas S., David, Bruno, De Bruyn, Colin, De Meyer, M., De Ridder, Chantal, Delatte, H., Dettori, M.T., Downer, S.J., Dubreuil, Christine, Evans, K.J., Fan, Bin, Ferrara, G., Gagné, André, Gaillard, Maria, Gigliarelli, L., Giovinazzi, J., Gomez, D.R., Grünwald, N.J., Hansson, Bengt, Huotari, T., Jank, L., Jousselin, E., Jungmann, L., Kaczmarek, M.E., Khasa, Damase P., Kneebone, Jeff, Korpelainen, H., Kostamo, K., Lanfaloni, L., Lin, Haoran, Liu, Xiaochun, Lucentini, L., Maes, G.E., Mahaffee, W.F., Meng, Zining, Micali, S., Milano, I., Mok, H.F., Morin, L., Neill, T.M., Newton, Craig H., Ostrow, D. Gigi, Palomba, A., Panara, F., Puletti, M.E., Quarta, R., Quilici, S., Ramos, A.K.B., Rigaud, Thierry, Risterucci, A.M., Salomon, Matthew P., Sánchez-Guillén, Rosa A., Sarver, Shane K., Sequeira, A.S., Sforça, D.A., Simiand, C., Smith, Brian, Sousa, A.C.B., Souza, A.P., Stepien, C.C., Stuckert, A.J., Sulikowski, James, Tayeh, A., Tinti, F., Tsang, Paul C.W., Van Houdt, J.K.J., Vendramin, E., Verde, I., Virgilio, M., Wang, Huan L., Wang, Le, Wattier, Rémi A., Wellenreuther, Maren, Xie, Cong X., Zane, L., Zhang, Xiu J., Zhang, Yong, Zhuang, Zhimeng, and Zucchi, M.I. (2010) Permanent Genetic Resources added to Molecular Ecology Resources Database 1 December 2009–31 January 2010. Molecular Ecology Resources, 10 (3). pp. 576-579.

Andersen, S.B, Vestergaard , M.L, Ainsworth, T.D, Hoegh-Guldberg, O., and Kühl, M. (2010) Acute tissue death (white syndrome) affects the microenvironment of tabular Acropora corals. Aquatic Biology, 10 (1). pp. 99-104.

Anthony, Kenneth R.N., Hoogenboom, Mia O., Maynard, Jeffrey A., Grottoli, Andréa G., and Middlebrook, Rachael (2009) Energetics approach to predicting mortality risk from environmental stress: a case study of coral bleaching. Functional Ecology, 23 (3). pp. 539-550.

Adams, Lisa M., Cumbo, Vivian, and Takabayashi, Misaki (2009) Exposure to sediment enhances primary acquisition of Symbiodinium by asymbiotic coral larvae. Marine Ecology Progress Series, 377. pp. 179-156.

Awruch, C.A., Pankhurst, N. W., Frusher , S.D., and Stevens, J. D. (2009) Reproductive seasonality and embryo development in the draughtboard shark Cephaloscyllium laticeps. Marine and Freshwater Research, 60 (12). pp. 1265-1272.

Awruch, Cynthia A., Pankhurst, Ned W., Frusher , Stewart D., and Stevens, John D. (2008) Endocrine and morphological correlates of reproduction in the draughtboard shark Cephaloscyllium laticeps (Elasmobranchii: Scyliorhinidae). Journal of Experimental Zoology, Part A, 309A (4). pp. 184-197.

Anthony, Shelley L., and Thomas, Séverine (2008) Coral Husbandry and Long-Term Coral Survival in the Coral Reef Exhibit at Reef HQ Aquarium, Townsville, Australia. Report. Burgers' Zoo, Arnhem, Netherlands.

Allcock, A. Louise, Strugnell, Jan M., and Johnson, Mark P. (2008) How useful are the recommended counts and indices in the systematics of the Octopodidae (Mollusca : Cephalopoda). Biological Journal of the Linnean Society, 95 (1). pp. 205-218.

Awruch, Cynthia A., Frusher, Stewart D., Pankhurst, Ned W., and Stevens, John D. (2008) Non-lethal assessment of reproductive characteristics for management and conservation of sharks. Marine Ecology Progress Series, 355. pp. 277-285.

Awruch, C. A, Lo Nostro, F.L., Di Giacomo , E., and Somoza, G. (2008) Reproductive biology of the angular angel shark Squatina guggenheim (Chondrichthyes: Squatinidae) off Patagonia (Argentina, southwestern Atlantic). Ciencias Marinas, 34 (1). pp. 17-28.

Abrego, David (2008) Temporal and environmental influences on the early establishment and maintenance of coral-symbiodinium symbioses. PhD thesis, James Cook University.

Almany, Glenn R., Peacock, Lisa F., Syms, Craig, McCormick, Mark I., and Jones, Geoffrey P. (2007) Predators target rare prey in coral reef fish assemblages. Oecologia, 152 (4). pp. 751-761.

Almany, Glenn R. , Berumen, Michael L., Thorrold, Simon R., Planes, Serge, and Jones, Geoffrey P. (2007) Local replenishment of coral reef fish populations in a marine reserve. Science, 316 (5825). pp. 742-744.

Anthony, Kenneth R.N., Connolly, Sean R., and Hoegh-Guldberg, Ove (2007) Bleaching, energetics, and coral mortality risk: Effects of temperature, light, and sediment regime. Limnology and Oceanography, 52 (2). pp. 716-726.

Allcock, A.L., Strugnell, J.M., Prodöhl, P., Piatkowski, U., and Vecchione, M. (2007) A new species of Pareledone (Cephalopoda : Octopodidae) from Antarctic Peninsula Waters. Polar Biology, 30 (7). pp. 883-893.

Aragones, Lemnuel V., Lawler, Ivan R., Foley, William J., and Marsh, Helene (2006) Dugong grazing and turtle cropping: grazing optimization in tropical seagrass systems? Oecologia, 149 (4). pp. 635-647.

Andrefouet, S., Ouillon, S., Brinkman, R., Falter, J., Douillet, P., Wolk, F., Smith, R., Garen, P., Martinez, E., Laurent, V., Lo, C., Remoissenet, G., Scourzic, B., Gilbert, A., Deleersnijder, E., Steinberg, C., Choukroun, S., and Buestel, D. (2006) Review of solutions for 3D hydrodynamic modeling applied to aquaculture in South Pacific atoll lagoons. Marine Pollution Bulletin, 52 (10). pp. 1138-1155.

Anthony, Kenneth R.N. (2006) Enhanced energy status of corals on coastal, high-turbidity reefs. Marine Ecology Progress Series, 319. pp. 111-116.

Arvedlund, Michael, Iwao, Kenji, Brolund, Thea Marie, and Takemura, Akihiro (2006) Juvenile Thalassoma amblycephalum Bleeker (Labridae, Teleostei) dwelling among the tentacles of sea anemones: a cleanerfish with an unusual client? Journal of Experimental Marine Biology and Ecology, 329 (2). pp. 161-173.

Allcock, A.L., Strugnell, J.M., Ruggiero, H., and Collins, M.A. (2006) Redescription of the deep-sea octopod Benthoctopus normani (Massy 1907) and a description of a new species from the Northeast Atlantic. Marine Biology Research, 2 (6). pp. 372-387.

Arnold , Peter W., Birtles, R. Alastair, Dunstan, Andy , Lukoschek, Vimoksalehi, and Matthews, Monique (2005) Colour patterns of the dwarf minke whale Balaenoptera acutorostrata sensu lato: description, cladistic analysis and taxonomic implications. Memoirs of the Queensland Museum, 51 (2). pp. 277-307.

Arnold, P.W., Birtles, R. A., Sobtzick, S., Matthews, M., and Dunstan, A. (2005) Gulping behaviour in rorqual whales: underwater observations and functional interpretation. Memoirs of the Queensland Museum, 51 (2). pp. 309-332.

Arthur, Rohan, Done, Terence J., and Marsh, Helene (2005) Benthic recovery four years after an El Niño-induced coral mass mortality in the Lakshadweep atolls. Current Science, 89 (4). pp. 694-699.

Andre, Jessica, Gyuris, Emma, and Lawler, Ivan R. (2005) Comparison of the diets of sympatric dugongs and green turtles on the Orman Reefs, Torres Strait, Australia. Wildlife Research, 32 (1). pp. 53-62.

Almany, Glenn R (2004) Differential effects of habitat complexity, predators and competitors on abundance of juvenile and adult coral reef fishes. Oecologia, 141 (1). pp. 105-113.

Allen, Simon, Marsh, Helene, and Hodgson, Amanda (2004) Occurrence and conservation of dugong (Sirenia: Dugongidae) in New South Wales. Linnean Society of New South Wales. Proceedings, 125. pp. 211-216.

Almany, Glenn R., and Webster, Michael S. (2004) Odd species out as predators reduce diversity of coral-reef fishes. Ecology, 85 (11). pp. 2933-2937.

Adams, S. (2003) Morphological ontogeny of the gonad of three plectropomid species through sex differentiation and transition. Journal of Fish Biology, 63 (1). pp. 22-36.

Arango, Claudia Patricia (2002) Morphological and molecular phylogenetic analysis of the sea spiders (Arthropoda, Pycnogonida) and taxonomic study of tropical Australian forms. PhD thesis, James Cook University.

Arvedlund, M., McCormick, M.I., and Ainsworth, T. (2000) Effects of photoperiod on growth of larvae and juveniles of the anemonefish Amphiprion melanopus. Naga - The ICLARM Quarterly , 23 (2). pp. 18-23.

Arango, Claudia (2000) Three species of sea spiders (Pycnogonida) from Santa Marta, Columbian Caribbean. Boletin de Investigaciones Marinas y Costeras, 29. pp. 59-66.

Anthony, Kenneth R.N. (1999) A tank system for studying benthic aquatic organisms at predictable levels of turbidity and sedimentation: case study examining coral growth. Limnology and Oceanography, 44 (6). pp. 1415-1422.

Anthony, Kenneth R.N. (1999) Coral suspension feeding on fine particulate matter. Journal of Experimental Marine Biology and Ecology, 232 (1). pp. 85-106.

Anthony, Kenneth Roald Nies (1999) Sediment: stress factor or food source for reef corals. PhD thesis, James Cook University.

Ayre, David J., Hughes, Terence P., and Standish, Rachel J. (1997) Genetic differentiation, reproductive mode, and gene flow in the brooding coral pocillopora damicornis along the Great Barrier Reef, Australia. Marine Ecology Progress Series, 159. pp. 175-187.

Aragones, Lemnuel V. (1996) Dugongs and green turtles: grazers in the tropical seagrass ecosystem. PhD thesis, James Cook University of North Queensland.

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B

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Borsa, Philippe, Congdon, Brad, and Weimerskirch, H. (2015) Mouvements en mer des puffins fouquets de la colonie de Temrock (Nouvelle-Caledonie): compte rendu de mission, 28 Novembre - 08 Decembre 2014 / At-sea movements of wedge-tail shearwaters from Temrock (New Caledonia): mission report, 28 November – 08 December 2014. Report. Institut de Recherche pour le Developpment, Noumea, Nouvelle Caledonie.

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Brooker, Rohan Maurice Ralfe (2014) Determinants of resource specialisation and its ecological consequences for the corallivorous filefish, Oxymonacanthus longirostris. PhD thesis, James Cook University.

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Bauman, Andrew G., Baird, Andrew H., Burt, John A., Pratchett, Morgan S., and Feary, David A. (2014) Patterns of coral settlement in an extreme environment: the southern Persian Gulf (Dubai, United Arab Emirates). Marine Ecology Progress Series, 499. pp. 115-126.

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Brandl, S.J., and Bellwood, D.R. (2013) Pair formation in the herbivorous rabbitfish Siganus doliatus. Journal of Fish Biology, 82 (6). pp. 2031-2044.

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Bridge, Thomas, Beaman, Robin, Done, Terry, and Webster, Jody (2012) Predicting the location and spatial extent of submerged coral reef habitat in the Great Barrier Reef world heritage area, Australia. PLoS ONE, 7 (10). pp. 1-11.

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Bartlett, Christopher Yeoman (2009) Emergence, evolution and outcomes of marine protected areas in Vanuatu: implications for social-ecological governance. PhD thesis, James Cook University.

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Berumen, Michael L, and Pratchett, Morgan S (2008) Trade-offs associated with dietary specialization in corallivorous butterflyfishes (Chaetodontidae: Chaetodon). Behavioral Ecology and Sociobiology, 62 (6). pp. 989-994.

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Baird, Andrew H., and Kerr, Alexander M. (2008) Landscape analysis and tsunami damage in Aceh: comment on Iverson and Prasad (2007). Landscape Ecology, 23 (1). pp. 3-5.

Bannister, Raymond (2008) The ecology and feeding biology of the sponge Rhopaloeides odorabile. PhD thesis, James Cook University.

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Bannister, R.J., Brinkman, R., Wolff, C., Battershill, C., and de Nys, R. (2007) The distribution and abundance of dictyoceratid sponges in relation to hydrodynamic features: identifying candidates and environmental conditions for sponge aquaculture. Marine and Freshwater Research, 58 (7). pp. 624-633.

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Carlson, John K., and Simpfendorfer, Colin A. (2015) Recovery potential of smalltooth sawfish, Pristis pectinata, in the United States determined using population viability models. Aquatic Conservation: marine and freshwater ecosystems , 25 (2). pp. 187-200.

Correia, M., Caldwell, I.R., Koldewey, H.J., Andrade, J.P., and Palma, J. (2015) Seahorse (Hippocampinae) population fluctuations in the Ria Formosa Lagoon, south Portugal. Journal of Fish Biology, 87 (3). pp. 679-690.

Cohen, Philippa Jane, and Steenbergen, Dirk Johan (2015) Social dimensions of local fisheries co-management in the Coral Triangle. Environmental Conservation, 42 (3). pp. 278-288.

Casey, Jordan Marie (2015) The role of territorial grazers in coral reef trophic dynamics from microbes to apex predators. PhD thesis, James Cook University.

Collier, C.J., and Waycott, M. (2014) Temperature extremes reduce seagrass growth and induce mortality. Marine Pollution Bulletin, 83 (2). pp. 483-490.

Cullen-Unsworth, Leanne C., Nordlund, Lina Mtwana, Paddock, Jessica, Baker, Susan, McKenzie, Len, and Unsworth, Richard K.F. (2014) Seagrass meadows globally as a coupled social–ecological system: implications for human wellbeing. Marine Pollution Bulletin, 83 (2). pp. 387-397.

Chong-Seng, K.M., Graham, N.A.J., and Pratchett, M.S. (2014) Bottlenecks to coral recovery in the Seychelles. Coral Reefs, 33 (2). pp. 449-461.

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Collier, Catherine J., Villacorta-Rath, Cecilia, van Dijk, Kor-jent, Takahashi, Miwa, and Waycott, Michelle (2014) Seagrass proliferation precedes mortality during hypo-salinity events: a stress-induced morphometric response. PLoS ONE, 9 (4). e94014. pp. 1-11.

Clements, Kendall D., Angert, Esther R., Montgomery, W. Linn, and Choat, Howard (2014) Intestinal microbiota in fishes: what's known and what's not. Molecular Ecology, 23 (8). pp. 1891-1898.

Cleary, Daniel F.R., Pólonia, Ana R.M., Renema, Willem, Hoeksema, Bert W., Wolstenholme, Jackie, Tuti, Yosephine, and de Voogd, Nicole J. (2014) Coral reefs next to a major conurbation: a study of temporal change (1985−2011) in coral cover and composition in the reefs of Jakarta, Indonesia. Marine Ecology Progress Series, 501. pp. 89-98.

Chivers, Douglas P., McCormick, Mark I., Nilsson, Göran E., Munday, Philip L., Watson, Sue-Ann, Meekan, Mark, Mitchell, Matthew D., Corkill, Katherine C., and Ferrari, Maud C.O. (2014) Impaired learning about predators and lower survival under elevated CO2: a consequence of neurotransmitter interference. Global Change Biology, 20 (2). pp. 515-522.

Carlson, J.K., Gulak, S.J.B., Simpfendorfer, C.A., Grubbs, R.D., Romine, J.G., and Burgess, G.H. (2014) Movement patterns and habitat use of smalltooth sawfish, Pristis pectinata, determined using pop-up satellite archival tags. Aquatic Conservation: marine and freshwater ecosystems , 24 (1). pp. 104-117.

Chivers, Douglas P., McCormick, Mark I., Mitchell, Matthew D., Ramasamy, Ryan A., and Ferrari, Maud C.O. (2014) Background level of risk determines how prey categorize predators and non-predators. Proceedings of the Royal Society of London Series B, Biological Sciences, 281 (1787). pp. 1-6.

Cole, Andrew J., and Pratchett, Morgan S. (2014) Diversity in diet and feeding behaviour of butterflyfishes: reliance on reef corals versus reef habitats. In: Pratchett, Morgan S., Berumen, Michael L., and Kapoor, B.G., (eds.) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA, pp. 107-139.

Carrette, Teresa Jo (2014) Etiology of Irukandji Syndrome with particular focus on the venom ecology and life history of one medically significant carybdeid box jellyfish Alatina moseri. PhD thesis, James Cook University.

Casey, Jordan M., Ainsworth, Tracy D., Choat, J. Howard, and Connolly, Sean R. (2014) Farming behaviour of reef fishes increases the prevalence of coral disease associated microbes and black band disease. Proceedings of the Royal Society of London Series B, Biological Sciences, 281 (1788). 20141032. pp. 1-8.

Cowman, Peter F. (2014) Historical factors that have shaped the evolution of tropical reef fishes: a review of phylogenies, biogeography, and remaining questions. Frontiers in Genetics, 5. 394. pp. 1-15.

Chin, Andrew (2014) Hunting porcupines: citizen scientists contribute new knowledge about rare coral reef species. Pacific Conservation Biology, 20 (1). pp. 48-53.

Currey, Leanne M., Heupel, Michelle R., Simpfendorfer, Colin A., and Williams, Ashley J. (2014) Inferring movement patterns of a coral reef fish using oxygen and carbon isotopes in otolith carbonate. Journal of Experimental Marine Biology and Ecology, 456. pp. 18-25.

Claydon, J.A.B., McCormick, M.I., and Jones, G.P. (2014) Multispecies spawning sites for fishes on a low-latitude coral reef: spatial and temporal patterns. Journal of Fish Biology, 84 (4). pp. 1136-1163.

Caballes, Ciemon F., and Pratchett, Morgan S. (2014) Reproductive biology and early life history of the crown-of-thorns starfish. In: Whitmore, Eric, (ed.) Echinoderms: ecology, habitats and reproductive biology. Marine Biology . Nova Science Publishers, New York, NY, USA, pp. 101-146.

Coles, Rob, Short, Fred, Miguel, Fortes, and Kuo, John (2014) Twenty years of seagrass networking and advancing seagrass science: the International Seagrass Biology Workshop Series. Pacific Conservation Biology, 20 (1). pp. 8-16.

Cole, A.J., Lawton, R.J., Pisapia, C., and Pratchett, M.S. (2014) The effects of coral bleaching on settlement preferences and growth of juvenile butterflyfishes. Marine Environmental Research, 98. pp. 106-110.

Cipresso Pereira, Pedro Henrique Cipresso, Moraes, Rodrigo Lima, dos Santos, Marcus Vinicius Bezerra, Lippi, Daniel Lino, Feitosa, João Lucas Leão, and UNSPECIFIED (2014) The influence of multiple factors upon reef fish abundance and species richness in a tropical coral complex. Ichthyological Research, 61 (4). pp. 375-384.

Cumbo, Vivian R., Edmunds, Peter J., Wall, Christopher B., and Fan, Tung-Yung (2013) Brooded coral larvae differ in their response to high temperature and elevated pCO2 depending on the day of release. Marine Biology, 160 (11). pp. 2903-2917.

Curley, B.G., Glasby, T.M., Curley, A.J., Creese, R.G., and Kingsford, M.J. (2013) Enhanced numbers of two temperate reef fishes in a small, partial-take marine protected area related to spearfisher exclusion. Biological Conservation, 167. pp. 435-445.

Chivers, Douglas P., Dixson, Danielle L., White, James R., McCormick, Mark I., and Ferrari, Maud C.O. (2013) Degradation of chemical alarm cues and assessment of risk throughout the day. Ecology and Evolution, 3 (11). pp. 3925-3934.

Cowman, Peter F., and Bellwood, David R. (2013) Vicariance across major marine biogeographic barriers: temporal concordance and the relative intensity of hard versus soft barriers. Proceedings of the Royal Society of London Series B, Biological Sciences, 280 (1768). 20131541. pp. 1-8.

Cutmore, Scott C., Miller, Terrence L., Curran, Stephen S., Bennett, Michael B., and Cribb, Thomas H. (2013) Phylogenetic relationships of the Gorgoderidae (Platyhelminthes: Trematoda), including the proposal of a new subfamily (Degeneriinae n. subfam.). Parasitology Research, 112 (8). pp. 3063-3074.

Curnock, Matthew I., Birtles, R. Alastair, and Valentine, Peter S. (2013) Increased use levels, effort, and spatial distribution of tourists swimming with dwarf minke whales at the Great Barrier Reef. Tourism in Marine Environments, 9 (1-2). pp. 5-17.

Cumbo, V.R., and Baird, A.H. (2013) Chromera velia: Coral symbiont or parasite? Galaxea, Journal of Coral Reef Studies, 15 (1). pp. 15-16.

Cumbo, V.R., Baird, A.H., and Van Oppen, M.J.H. (2013) The promiscuous larvae: flexibility in the establishment of symbiosis in corals. Coral Reefs, 32 (1). pp. 111-120.

Cohen, Yossi, Pollock, F. Joseph, Rosenberg, Eugene, and Bourne, David G. (2013) Phage therapy treatment of the coral pathogen Vibrio coralliilyticus. MicrobiologyOpen, 2 (1). pp. 64-74.

Cowman, Peter F., and Bellwood, David R. (2013) The historical biogeography of coral reef fishes: global patterns of origination and dispersal. Journal of Biogeography, 40 (2). pp. 209-224.

Cvitanovic, C., Wilson, S.K., Fulton, C.J., Almany, G.R., Anderson, P., Babcock, R.C., Ban, N.C., Beeden, R.J., Beger, M., Cinner, J., Dobbs, K., Evans, L.S., Farham, A., Friedman, K.J., Gale, K., Gladstone, W., Grafton, Q., Graham, N.A.J., Gudge, S., Harrison , P.L., Holmes, T.H., Johnstone, N., Jones, G.P., Jordan, A., Kendrick, A.J., Klein, C.J., Little , L.R., Malcolm , H.A., Morris, D., Possingham, H.P., Prescott, J., Pressey, R.L., Skilleter, G.A., Simpson, C., Waples, K., Wilson, D., and Williamson, D.H. (2013) Critical research needs for managing coral reef marine protected areas: perspectives of academics and managers. Journal of Environmental Management, 114. pp. 84-91.

Ceccarelli, Daniela M., McKinnon, A. David, Andréfouët, Serge, Allain, Valerie, Young, Jock, Gledhill, Daniel C., Flynn, Adrian, Bax, Nicholas J., Beaman, Robin, Borsa, Philippe, Brinkman, Richard, Bustamante, Rodrigo H., Campbell, Robert, Cappo, Mike, Cravatte, Sophie, D'Agata, Stéphanie, Dichmont, Catherine M., Dunstan, Piers K., Dupouy, Cécile, Edgar, Graham, Farman, Richard, Furnas, Miles, Garrigue, Claire, Hutton, Trevor, Kulbicki, Michel, Letourneur, Yves, Lindsay, Dhugal, Menkes, Christophe, Mouillot, David, Parravicini, Valeriano, Payri, Claude, Pelletier, Bernard, Richer de Forges, Bertrand, Ridgway, Ken, Rodier, Martine, Samadi, Sarah, Schoeman, David, Skewes, Tim, Swearer, Steven, Vigliola, Laurent, Wantiez, Laurent, Williams, Alan, Williams, Ashley, and Richardson, Anthony J. (2013) The Coral Sea: physical environment, ecosystem status and biodiversity assets. In: Lesser, Michael, (ed.) Advances in Marine Biology. Advances in Marine Biology, 66 . Elsevier, Amsterdam, The Netherlands, pp. 213-290.

Chaves, L.T.C., Pereira, P.H.C., and Feitosa, J.L.L. (2013) Coral reef fish association with macroalgal beds on a tropical reef system in North-eastern Brazil. Marine and Freshwater Research, 64 (12). pp. 1101-1111.

Cumbo, Vivian, Fan, T.Y., and Edmunds, P.J. (2013) Effects of exposure duration on the response of Pocillopora damicornis larvae to elevated temperature and high pCO₂. Journal of Experimental Marine Biology and Ecology, 439. pp. 100-107.

Chin, Andrew (2013) Hunting porcupines... Sport Diving Magazine, 160. pp. 48-49.

Chin, A., Tobin, A.J., Heupel, M.R., and Simpfendorfer, C.A. (2013) Population structure and residency patterns of the blacktip reef shark Carcharhinus melanopterus in turbid coastal environments. Journal of Fish Biology, 82 (4). pp. 1192-1210.

Cariglia, Nicoletta, Wilson, Shaun K., Graham, Nicholas A.J., Fisher, Rebecca, Robinson, Jan, Aumeeruddy, Riaz, Quatre, Rodney, and Polunin, Nicholas V.C. (2013) Sea cucumbers in the Seychelles: effects of marine protected areas on high-value species. Aquatic Conservation, 23 (3). pp. 418-428.

Chan, Neil C.S., and Connolly, Sean R. (2013) Sensitivity of coral calcification to ocean acidification: a meta-analysis. Global Change Biology, 19 (1). pp. 282-290.

Coker, Darren J., Walker, Stefan P.W., Munday, Philip L., and Pratchett, Morgan S. (2013) Social group entry rules may limit population resilience to patchy habitat disturbance. Marine Ecology Progress Series, 493. pp. 237-242.

Caldwell, Iain R., and Gergel, Sarah E. (2013) Thresholds in seascape connectivity: influence of mobility, habitat distribution, and current strength on fish movement. Landscape Ecology, 28. pp. 1937-1948.

Chin, Andrew, Simpfendorfer, Colin, Tobin, Andrew, and Heupel, Michelle (2013) Validated age, growth and reproductive biology of Carcharhinus melanopterus, a widely distributed and exploited reef shark. Marine and Freshwater Research, 64 (10). pp. 965-975.

Chin, Andrew (2013) The biology and ecology of the blacktip reef shark Carcharhinus melanopterus (Quoy & Gaimard, 1824) and implications for management. PhD thesis, James Cook University.

Caldwell, Iain R., and Vincent, Amanda C.J. (2013) A sedentary fish on the move: effects of displacement on long-snouted seahorse (Hippocampus guttulatus Cuvier) movement and habitat use. Environmental Biology of Fishes, 96. pp. 67-75.

Cumbo, V.R., Fan, T.-Y., and Edmunds, P.J. (2012) Scleractinian corals capture zooplankton within days of settlement and metamorphosis. Coral Reefs, 31 (4). p. 1155.

Chong-Seng, Karen M., Mannering, Thomas D., Pratchett, Morgan S., Bellwood, David R., and Graham, Nicholas A.J. (2012) The influence of coral reef benthic condition on associated fish assemblages. PLoS ONE, 7 (8). e42167. pp. 1-10.

Coker, Darren J., Pratchett, Morgan S., and Munday, Philip L. (2012) Influence of coral bleaching, coral mortality and conspecific aggression on movement and distribution of coral-dwelling fish. Journal of Experimental Marine Biology and Ecology, 414-415. pp. 62-68.

Ceh, Janja, Raina, Jean-baptiste, Soo, Rochelle M., van Keulen, Mike, and Bourne, David G. (2012) Coral-bacterial communities before and after a coral mass spawning event on Ningaloo Reef. PLoS One, 7 (5). pp. 1-7.

Carranza, Alvar, Munoz Recio, Araceli, Kitahara, Marcelo, Scarabino, Fabrizio, Ortega, Leonardo, Lopez, Guzman, Franco-Fraguas, Paula, De Mello, Camila, Acosta, Juan, and Fontan, Antia (2012) Deep-water coral reefs from the Uruguayan outer shelf and slope. Marine Biodiversity, 42 (3). pp. 411-414.

Connolly, S.R., Lopez-Yglesias, M.A., and Anthony, K.R.N. (2012) Food availability promotes rapid recovery from thermal stress in a scleractinian coral. Coral Reefs, 31 (4). pp. 951-960.

Coker, D.J., Graham, N.A.J., and Pratchett, M.S. (2012) Interactive effects of live coral and structural complexity on the recruitment of reef fishes. Coral Reefs, 31 (4). pp. 919-927.

Cumbo, V.R., Fan, T.-Y., and Edmunds, P.J (2012) Physiological development of brooded larvae from two pocilloporid corals in Taiwan. Marine Biology, 159 (12). pp. 2853-2866.

Caldwell, I.R., and Vincent, A.C.J. (2012) Revisiting two sympatric European seahorse species: apparent decline in the absence of exploitation. Aquatic Conservation: marine and freshwater ecosystems, 22 (4). pp. 427-435.

Ceccarelli, D.M., and Williamson, D.H. (2012) Sharks that eat sharks: opportunistic predation by wobbegongs. Coral Reefs, 31 (2). p. 471.

Cowman, P.F., and Bellwood, D.R. (2011) Coral reefs as drivers of cladogenesis: expanding coral reefs, cryptic extinction events, and the development of biodiversity hotspots. Journal of Evolutionary Biology, 24 (12). pp. 2543-2562.

Ceccarelli, D.M., Richards, Z.T., Pratchett, M.S., and Cvitanovic, C. (2011) Rapid increase in coral cover on an isolated coral reef, the Ashmore Reef National Nature Reserve, north-western Australia. Marine and Freshwater Research, 62 (10). pp. 1214-1220.

Cuveliers, E.L., Volckaert, F.A.M., Rijnsdorp, A.D., Larmuseau, M.H.D., and Maes, G.E. (2011) Temporal genetic stability and high effective population size despite fisheries-induced life-history trait evolution in the North Sea sole. Molecular Ecology, 20 (17). pp. 3555-3568.

Ceccarelli, D.M., Jones, G.P, and McCook, L.J. (2011) Interactions between herbivorous fish guilds and their influence on algal succession on a coastal coral reef. Journal of Experimental Marine Biology and Ecology, 399 (1). pp. 60-67.

Cavalcante, Geórgenes H. , Kjerfve, Björn, Feary, David A., Bauman, Andrew G., and Usseglio, Paolo (2011) Water Currents and Water Budget in a Coastal Megastructure, Palm Jumeirah Lagoon, Dubai, UAE. Journal of Coastal Research, 27 (2). pp. 384-393.

Coles, Rob, Grech, Alana, Rasheed, Mike, McKenzie, Len, Unsworth, Richard, and Short, Fred (2011) Seagrass ecology and threats in the tropical Indo-Pacific bioregion. In: Pirog, Robert S., (ed.) Seagrass: Ecology Uses and Threats. Oceanography and Ocean Engineering . Nova Science Publishers, New York, NY, USA, pp. 225-239.

Chen, Kao-Song, Hsieh, Hernyi Justin, Keshavmurthy, Shashank, Leung, Julia Ka Lai, Lien, I-Ting, Nakano, Yoshikatsu, Plathong, Sakanan, Huang, Hui, and Chen, Chaolun Allen (2011) Latitudinal gradient of morphological variations in zebra coral Oulastrea crispata (Scleractinia: Faviidae) in the West Pacific. Zoological Studies, 50 (1). pp. 43-52.

Caldwell, I.R., Correia, M., Palma, J., and Vincent, A.C.J. (2011) Advances in tagging syngnathids, with the effects of dummy tags on behaviour of Hippocampus guttulatus. Journal of Fish Biology, 78. pp. 1769-1785.

Cowman, Peter Francis (2011) Dating the evolutionary origins of coral reef fishes. PhD thesis, James Cook University.

Cole, A.J., and Pratchett, M.S. (2011) Effects of juvenile coral-feeding butterflyfishes on host corals. Coral Reefs, 30 (3). pp. 623-630.

Curnock, Matthew, Birtles, Alastair, and Valentine, Peter (2011) Mechanisms for assessing the sustainability of swim-with-whales tourism in the Great Barrier Reef. In: 3rd Australian National Network in Marine Science Conference. pp. 1-5. From: 3rd Australian National Network in Marine Science Conference, 29 November - 1 December 2011, Perth. (Unpublished)

Chambers, Lynda E., Devney, Carol A., Congdon, Bradley C., Dunlop, Nic, Woehler, Eric J., and Dann, Peter (2011) Observed and predicted effects of climate on Australian seabirds. Emu, 111 (3). pp. 235-251.

Cole, A.J. (2010) Cleaning to corallivory: ontogenetic changes in feeding behaviour of tubelip wrasse. Coral Reefs, 29 (1). pp. 125-129.

Cuveliers, E.L., Geffen, A.J., Guelinckx, J., Raeymaekers, J.A.M., Skadal, J., Volckaert, F.A.M., and Maes, G.E. (2010) Microchemical variation in juvenile Solea solea otoliths as a powerful tool for studying connectivity in the North Sea. Marine Ecology Progress Series, 401. pp. 211-220.

Cappo, Mike (2010) Development of a baited video technique and spatial models to explain patterns of fish biodiversity in inter-reef waters. PhD thesis, James Cook University.

Connolly, Sean R., and Baird, Andrew H. (2010) Estimating dispersal potential for marine larvae: dynamic models applied to scleractinian corals. Ecology, 91 (12). pp. 3572-3583.

Collins, Martin A., Laptikhovsky, Vladimir, and Strugnell, Jan M. (2010) Expanded description of Opisthoteuthis hardyi based on new specimens from the Patagonian slope. Journal of the Marine Biological Association of the United Kingdom, 90 (3). pp. 605-611.

Curnock, Matthew I. (2010) Mechanisms for assessing the sustainability of swimming-with-whales tourism in the Great Barrier Reef. PhD thesis, James Cook University.

Coppe, Alessandro, Pujolar, Jose Martin, Maes, Gregory E., Larsen, Peter F., Hansen, Michael M., Bernatchez, Louis, Zane, Lorenzo, and Bortoluzzi, Stefania (2010) Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel. BMC Genomics, 11. 635. pp. 1-13.

Cowman, Peter F., Bellwood, David R., and van Herwerden, Lynne (2009) Dating the evolutionary origins of wrasse lineages (Labridae) and the rise of trophic novelty on coral reefs. Molecular Phylogenetics and Evolution, 52 (3). pp. 621-631.

Cinner, Joshua, Fuentes, Mariana M.P.B., and Randriamahazo, Herilala (2009) Exploring social resilience in Madagascar’s marine protected areas. Ecology and Society, 14 (1). .

Cole, A.J., Pratchett, M.S., and Jones, G.P. (2009) Effects of coral bleaching on the feeding response of two species of coral-feeding fish. Journal of Experimental Marine Biology and Ecology, 373. pp. 11-15.

Cuveliers, E.L., Bolle, L.J., Volckaert, F.A.M., and Maes, G.E. (2009) Influence of DNA isolation from historical otoliths on nuclear–mitochondrial marker amplification and age determination in an overexploited fish, the common sole (Solea solea L.). Molecular Ecology Resources, 9 (3). pp. 725-732.

Curnock, Matthew, Birtles, Alastair, and Valentine, Peter (2009) Key steps towards adaptive management of a whalewatching industry: developing sustainability objectives and indicators for the swimming-with-dwarf minke whales activity in the Great Barrier Reef. In: 18th Biennial Conference on the Biology of Marine Mammals. p. 1. From: 18th Biennial Conference on the Biology of Marine Mammals, 12-16 October 2009, Quebec. (Unpublished)

Curley, Belinda G., and Gillings, Michael R. (2009) Population connectivity in the temperate damselfish Parma microlepis: analyses of genetic structure across multiple spatial scales. Marine Biology, 156 (3). pp. 381-393.

Connolly, Sean R, Dornelas, Maria, Bellwood, David R., and Hughes, Terence P (2009) Testing species abundance models: a new bootstrap approach applied to Indo-Pacific coral reefs. Ecology, 90 (11). pp. 3138-3149.

Cleary, Daniel FR, De Vantier, Lyndon, Giyanto, Vail, Lyle, Manto, Philip, de Voogd, Nicole J, Rachello-Dolmen, Paola G, Tuti, Yosephine, Budiyanto, Agus, Wolstenholme, Jackie, Hoeksema, Bert W, and Suharsono (2008) Relating variation in species composition to environmental variables: a multi-taxon study in an Indonesian coral reef complex. Aquatic Sciences, 70 (4). pp. 419-431.

Cooper, Timothy F., De'Ath, Glenn, Fabricius, Katharina E., and Lough, Janice M. (2008) Declining coral calcification in massive Porites in two nearshore regions of the northern Great Barrier Reef. Global Change Biology, 14 (3). pp. 529-538.

Chin, Andrew, Sweatman, Hugh, Forbes, Susan, Perks, Helen, Walker, Ryan, Jones, Geoff, Williamson, David, Evans, Richard, Hartley, Fraser, Armstrong, Shannon, Malcolm, Hamish, and Edgar, Graham (2008) 2008 Status of the coral reefs in Australia and Papua New Guinea. In: Wilkinson, Clive, (ed.) Status of Coral Reefs of the World: 2008. Global Coral Reef Monitoring Network, Townsville, QLD, Australia, pp. 159-176.

Cantin, Neal (2008) Chronic effects of herbicide exposure on photosynthesis, symbiosis and reproduction of reef building corals. PhD thesis, James Cook University.

Curnock, Matthew, Birtles, Alastair, and Valentine, Peter (2008) Developing sustainability objectives and indicators for swim-with-minke whales tourism in the Great Barrier Reef. In: CAUTHE 2008 Conference. pp. 1-5. From: CAUTHE 2008 Conference: Tourism and Hospitality Research , Training and Practice, 11-14 Feb,2008, Gold Coast, QLD, Australia.

Congdon, B.C. (2008) Seabirds. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 359-368.

Choat, J.H., and Russell, B.C. (2008) The fish assemblages of the Great Barrier Reef: their diversity and origin. In: Hutchings, Pat , Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 327-342.

Carruthers, T.J.B., Dennison, W.C., Kendrick, G.A., Waycott, M., Walker, D.I., and Cambridge, M.L. (2007) Seagrasses of south-west Australia: A conceptual synthesis of the world's most diverse and extensive seagrass meadows. Journal of Experimental Marine Biology and Ecology, 350 (1-2). pp. 21-45.

Congdon, Bradley C., Erwin, Carol A., Peck, Darren R., Baker, G. Barry, Double, Michael C., and O'Neill, Paul (2007) Vulnerability of seabirds on the Great Barrier Reef to climate change. In: Johnson, Johanna E., and Marshall, Paul A., (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia, pp. 427-464.

Curley, Belinda, and Gillings, Michael (2006) Isolation of microsatellites from Girella tricuspidata. Molecular Ecology Notes, 6 (2). pp. 428-430.

Chin, A., and Burgess, G.H. (2006) Zameus squamulosus. The IUCN Red List of Threatened Species. T60215A12322535.

Clarke, Cathryn L. (2006) The population dynamics and feeding preferences of Bursatella leachii (Opisthobranchia: Anaspidea) in northeast Queensland, Australia. Records of the Western Australian Museum: supplements, 69. pp. 11-21.

Ceccarelli, Daniela M., Jones, Geoffrey P., and McCook, Laurence J. (2005) Effects of territorial damselfish on an algal-dominated coastal coral reef. Coral Reefs, 24 (4). pp. 606-620.

Ceccarelli, Daniela M., Jones, Geoffrey P., and McCook, Laurence J. (2005) Foragers versus farmers: contrasting effects of two behavioural groups of herbivores on coral reefs. Oecologia, 145 (3). pp. 445-453.

Chin, Andrew (2005) Sharks and rays. In: Chin, Andrew, (ed.) The State of the Great Barrier Reef Online. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia, pp. 1-33.

Congdon, Bradley C., and Preker, Myriam (2004) Sex-specific chick provisioning and kleptoparasitism in the Least Frigatebird, Fregata ariel. Emu: austral ornithology, 104 (4). pp. 347-351.

Chin, Andrew (2004) Corals. In: Chin, Andrew, (ed.) The State of the Great Barrier Reef Online. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia, pp. 1-28.

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Cruz-Motta, J.J., and Collins, J. (2004) Impacts of dredged material disposal on a tropical soft-bottom benthic assemblage. Marine Pollution Bulletin, 48 (3). pp. 270-280.

Connolly, Sean R., and Muko, Soyoka (2003) Space preemption, size-dependent competition, and the coexistence of clonal growth forms. Ecology, 84 (11). pp. 2979-2988.

Connolly, Sean R., Bellwood, David R., and Hughes, Terence P. (2003) Indo-Pacific biodiversity of coral Rreefs: deviations from a mid-domain model. Ecology, 84 (8). pp. 2178-2190.

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Hoenner, Xavier, Whiting, Scott D., Hamann, Mark, Limpus, Colin J., Hindell, Mark A., and Mcmahon, Clive R. (2016) High-resolution movements of critically endangered hawksbill turtles help elucidate conservation requirements in northern Australia. Marine and Freshwater Research, 67 (8). pp. 1263-1278.

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Hair, Cathy, Mills, David J., McIntyre, Rowan, and Southgate, Paul C. (2016) Optimising methods for community-based sea cucumber ranching: experimental releases of cultured juvenile Holothuria scabra into seagrass meadows in Papua New Guinea. Aquaculture Reports, 3. pp. 198-208.

Heatwole, Harold, Lillywhite, Harvey, and Grech, Alana (2016) Physiological, ecological, and behavioural correlates of the size of the geographic ranges of sea kraits (Laticauda; Elapidae, Serpentes): a critique. Journal of Sea Research, 115. pp. 18-25.

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Hall, A.E., and Kingsford, M.J. (2016) Variation in the population demographics of Scolopsis bilineatus in response to predators. Coral Reefs, 35 (4). pp. 1173-1185.

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Head, Catherine E.I., Bonsall, Michael B., Koldewey, Heather, Pratchett, Morgan S., Speight, Martin, and Rogers, Alex D. (2015) High prevalence of obligate coral-dwelling decapods on dead corals in the Chagos Archipelago, central Indian Ocean. Coral Reefs, 34 (3). pp. 905-915.

Harrison, Hugo B., Saenz-Agudelo, Pablo, Al-Salamah, Manalle, Messmer, Vanessa, Pratchett, Morgan S., and Berumen, Michael L. (2015) Microsatellite multiplex assay for the coral-eating crown-of-thorns starfish, Acanthaster cf. planci. Conservation Genetics Resources, 7 (3). pp. 627-630.

Hobbs, Jean-Paul A., Frisch, Ashley J., Newman, Stephen J., and Wakefield, Corey B. (2015) Selective impact of disease on coral communities: outbreak of white syndrome causes significant total mortality of Acropora plate corals. PLoS ONE, 10 (7). e0132528. pp. 1-15.

Hodge, Jennifer, and Bellwood, David R. (2015) On the relationship between species age and geographical range in reef fishes: are widespread species older than they seem? Global Ecology and Biogeography , 24 (4). pp. 495-505.

Hall, N.M., Berry, K.L.E., Rintoul, L., and Hoogenboom, M.O. (2015) Microplastic ingestion by scleractinian corals. Marine Biology, 162 (3). pp. 725-732.

Hoogenboom, Mia, Rottier, Cécile, Sikorski, Severine, and Ferrier-Pagés, Christine (2015) Among-species variation in the energy budgets of reef-building corals: scaling from coral polyps to communities. Journal of Experimental Biology, 218 (24). pp. 3866-3877.

Heupel, Michelle R., Simpfendorfer, Colin A., Espinoza, Mario, Smoothey, Amy F., Tobin, Andrew, and Peddemors, Victor (2015) Conservation challenges of sharks with continental scale migrations. Frontiers in Marine Science, 2 (12). pp. 1-7.

Hess, Sybille, Wenger, Amelia S., Ainsworth, Tracy D., and Rummer, Jodie L. (2015) Exposure of clownfish larvae to suspended sediment levels found on the Great Barrier Reef: impacts on gill structure and microbiome. Scientific Reports, 5. 10561. pp. 1-8.

Humanes, A., and Bastidas, C. (2015) In situ settlement rates and early survivorship of hard corals: a good year for a Caribbean reef. Marine Ecology Progress Series, 539. pp. 139-151.

Hua, Xia, Cowman, Peter, Warren, Dan, and Bromham, Lindell (2015) Longevity is linked to mitochondrial mutation rates in rockfish: a test using poisson regression. Molecular Biology and Evolution, 32 (10). pp. 2633-2645.

Holbrook, Sally J., Schmitt, Russell J., Messmer, Vanessa, Brooks, Andrew J., Srinivasan, Maya, Munday, Philip L., and Jones, Geoffrey P. (2015) Reef fishes in biodiversity hotspots are at greatest risk from loss of coral species. PLoS One, 10 (5). e0124054. pp. 1-12.

Hadfield, Kerry A., Bruce, Niel L., and Smit, Nico (2015) Review of Mothocya Costa in Hope 1851 (Crustacea: Isopoda: Cymothoidae) from southern Africa with the description of a new species. African Zoology, 50 (2). pp. 147-163.

Hall, April Elizabeth (2015) Top-down control, trophic interactions, and the importance of predatory fishes on coral reefs. PhD thesis, James Cook University.

Haapkylä , J., Melbourne-Thomas, J., and Flavell, M. (2015) The association between coral communities and disease assemblages in the Wakatobi Marine National Park, south-eastern Sulawesi, Indonesia. Marine and Freshwater Research, 66 (10). pp. 948-955.

Hayward, David C., Grasso, Lauretta C., Saint, Robert, Miller, David J., and Ball, Eldon E. (2015) The organizer in evolution–gastrulation and organizer gene expression highlight the importance of Brachyury during development of the coral, Acropora millepora. Developmental Biology, 399 (2). pp. 337-347.

Hughes, Terry P., Bellwood, David R., Connolly, Sean R., Cornell, Howard V., and Karlson, Ronald H. (2014) Double jeopardy and global extinction risk in corals and reef fishes. Current Biology, 24 (24). pp. 2946-2951.

Hicks, Christina C., Stoeckl, Natalie, Cinner, Joshua E., and Robinson, Jan (2014) Fishery benefits and stakeholder priorities associated with a coral reef fishery and their implications for management. Environmental Science & Policy, 44. pp. 258-270.

Hodge, Jennifer R., Van Herwerden, Lynne , and Bellwood, David R. (2014) Temporal evolution of coral reef fishes: global patterns and disparity in isolated locations. Journal of Biogeography, 41 (11). pp. 2115-2127.

Hinestrosa, Gustavo, Webster, Jody M., Beaman, Robin J., and Anderson, Louise M. (2014) Seismic stratigraphy and development of the shelf-edge reefs of the Great Barrier Reef, Australia. Marine Geology, 353. pp. 1-20.

Hutchinson, Neil, Jenkins, Gregory P., Brown, Andrew, and Smith, Timothy M. (2014) Variation with depth in temperate seagrass-associated fish assemblages in Southern Victoria, Australia. Estuaries and Coasts, 37 (4). pp. 801-814.

Hadfield, Kerry A., Bruce, Niel L., and Smit, Nico J. (2014) Review of the fish parasitic genus Ceratothoa Dana, 1852 (Crustacea, Isopoda, Cymothoidae) from South Africa, including the description of two new species. ZooKeys, 400. pp. 1-42.

Hobbs, J.-P.A., Frisch, A.J., Mutz, S., and Ford, B.M. (2014) Evaluating the effectiveness of teeth and dorsal fin spines for non-lethal age estimation of a tropical reef fish, coral trout Plectropomus leopardus. Journal of Fish Biology, 84 (2). pp. 328-338.

Hundt, Peter J., Iglésias, Samuel P., Hoey, Andrew S., and Simons, Andrew M. (2014) A multilocus molecular phylogeny of combtooth blennies (Percomorpha: Blennioidei: Blenniidae): multiple invasions of intertidal habitats. Molecular Phylogenetics and Evolution, 70. pp. 47-56.

Hodge, Jennifer Reneé (2014) Biogeography and the evolution of coral reef fish species. PhD thesis, James Cook University.

Hadfield, Kerry A., Bruce, Niel L., Szinetár, Csaba, and Smit, Nico J. (2014) Ceratothoa retusa (Schiœdte & Meinert, 1883) (Isopoda, Cymothoidae), a variable species of fish parasitic marine isopod from the Indian Ocean. Crustaceana, 87 (4). pp. 448-462.

Hobbs, Jean-Paul A., Newman, Stephen J., Mitsopoulos, Gabby E.A., Travers, Michael J., Skepper, Craig L., Gilligan, Justin J., Allen, Gerald R., Choat, Howard J., and Ayling, Anthony M. (2014) Checklist and new records of Christmas Island fishes: the influence of isolation, biogeography and habitat availability on species abundance and community composition. Raffles Bulletin of Zoology, Supplement No. 30. pp. 184-202.

Hobbs, Jean-Paul A., van Herwerden, Lynne, Pratchett, Morgan S., and Allen, Gerald R. (2014) Hybridisation among butterflyfishes. In: Pratchett , Morgan S., Berumen , Michael L., and Kapoor , B.G., (eds.) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA, pp. 48-69.

Harris, Alasdair, Wilson, Shaun, Graham, Nicholas, and Sheppard, Charles (2014) Scleractinian coral communities of the inner Seychelles 10 years after the 1998 mortality event. Aquatic Conservation: marine and freshwater ecosystems , 24 (5). pp. 667-679.

Hoey, A.S., Brandl, S.J., and Bellwood, D.R. (2013) Diet and cross-shelf distribution of rabbitfishes (f. Siganidae) on the northern Great Barrier Reef: implications for ecosystem function. Coral Reefs, 32 (4). pp. 973-984.

Hodge, Jennifer R., Read, Charmaine I., Bellwood, David R., and van Herwerden, Lynne (2013) Evolution of sympatric species: a case study of the coral reef fish genus Pomacanthus (Pomacanthidae). Journal of Biogeography, 40 (9). pp. 1676-1687.

Horne, John B., Momigliano, Paolo, van Herwerden, Lynne, and Newman, Stephen J. (2013) Murky waters: searching for structure in genetically depauperate blue threadfin populations of Western Australia. Fisheries Research, 146. pp. 1-6.

Hobbs, Jean-Paul A., Frisch, Ashley J., Ford, Benjamin M., Thums, Michele, Saenz-Agudelo, Pablo, Furby, Kathryn A., and Berumen, Michael L. (2013) Taxonomic, spatial and temporal patterns of bleaching in anemones inhabited by anemonefishes. PLoS ONE, 8 (8). e70966. pp. 1-12.

Howells, Emily J., Willis, Bette L., Bay, Line K., and van Oppen, Madeleine J.H. (2013) Spatial and temporal genetic structure of Symbiodinium populations within a common reef-building coral on the Great Barrier Reef. Molecular Ecology, 22 (14). pp. 3693-3708.

Howells, Emily J., Berkelmans, Ray, van Oppen, Madeleine J.H., Willis, Bette L., and Bay, Line K. (2013) Historical thermal regimes define limits to coral acclimatization. Ecology, 94 (5). pp. 1078-1088.

Hyžný, Matúš, Bruce, Niel L., and Schlöegl, Jan (2013) An appraisal of the fossil record for the Cirolanidae (Malacostraca: Peracarida: Isopoda: Cymothoida), with a description of a new cirolanid isopod crustacean from the early Miocene of the Vienna Basin (Western Carpathians). Palaeontology, 56 (3). pp. 615-630.

Hopf, Jessica, and Kingsford, Michael (2013) The utility of statoliths and bell size to elucidate age and condition of a scyphomedusa (Cassiopea sp.). Marine Biology, 160 (4). pp. 951-960.

Hazel, Julia, Hamann, Mark, and Lawler, Ivan R. (2013) Home range of immature green turtles tracked at an offshore tropical reef using automated passive acoustic technology. Marine Biology, 160 (3). pp. 617-627.

Harris, Peter T., Bridge, Thomas C.L., Beaman, Robin J., Webster, Jody M., Nichol, Scott L., and Brooke, Brendan P. (2013) Submerged banks in the Great Barrier Reef, Australia, greatly increase available coral reef habitat. ICES Journal of Marine Science, 70 (2). pp. 284-293.

Hamann, Mark, Fuentes, Mariana M.P.B., Ban, Natalie C., and Mocellin, Véronique J.L. (2013) Climate change and marine turtles. In: Wyneken, Jeanette, Lohmann, Kenneth J., and Musick, John A., (eds.) The biology of sea turtles. CRC Press, Boca Raton, FL, USA, pp. 353-378.

Hartley, Fraser Andrew (2013) Fear of fishers: anti-predator behaviour of coral reef fish and its relevance to fisheries management and conservation. PhD thesis, James Cook University.

Hobbs, Jean-Paul, van Herwerden, Lynne, Jerry, Dean R., Jones, Geoffrey P., and Munday, Philip L. (2013) High genetic diversity in geographically remote populations of endemic and widespread coral reef angelfishes (genus: Centropyge). Diversity, 5 (1). pp. 39-50.

Horne, John B., van Herwerden, Lynne, Abellana, Sheena, and Mcilwain, Jennifer L. (2013) Observations of migrant exchange and mixing in a coral reef fish metapopulation link scales of marine population connectivity. Journal of Heredity, 104 (4). pp. 532-546.

Hadfield, Kerry A., Bruce, Niel L., and Smit, Nico J. (2013) Review of the fish-parasitic genus Cymothoa Fabricius, 1793 (Isopoda, Cymothoidae, Crustacea) from the southwestern Indian Ocean, including a new species from South Africa. Zootaxa, 3640 (2). pp. 152-176.

Hamada, Mayuko, Shoguchi, Eiichi, Shinzato, Chuya, Kawashima, Takeshi, Miller, David J., and Satoh, Nori (2013) The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations. Molecular Biology and Evolution, 30 (1). pp. 167-176.

Howells, E. J., Beltran, V. H., Bay, L. K., Willis, B. L., Van Oppen, M. J. H., and Larsen, N. W. (2012) Coral thermal tolerance shaped by local adaptation of photosymbionts. Nature Climate Change, 2 (2). pp. 116-120.

Hines, Ellen, Adulyanukosol, Kanjana, Poochaviranon, Sombat, Somany, Phay, Ath, Leng Sam, Cox, Nick, Symington, Keith, Tun, Tint, Ilangakoon, Anouk, de longh, Hans H., Aragones, Lemnuel V., Lu, Shaoyong, Jiang , Xia, Jing, Xin, D'souza, Elrika, Patankar, Vardhan, Sutaria, Dipani, Jethva, Bharat, and Solanki, Parimal (2012) Dugongs in Asia. In: Hines, Ellen M., Reynolds III, John E., Aragones, Lemnuel V., Mignucci-Giannoni, Antonio A., and Marmontel, Miriam, (eds.) Sirenian Conservation. University Press of Florida, Florida, USA, pp. 58-76.

Hoogenboom, Mia O., Campbell, Douglas A., Beraud, Eric, DeZeeuw, Katrina, and Ferrier-Pages, Christine (2012) Effects of light, food availability and temperature stress on the function of Photosystem II and Photosystem I of coral symbionts. PLoS ONE, 7 (1). e30167. pp. 1-14.

Heatwole, Harold, Grech, Alana, Monahan, John F., King, Susan, and Marsh, Helene (2012) Thermal biology of sea snakes and sea kraits. Integrative and Comparative Biology, 52 (2). pp. 257-273.

Hodge, Jennifer R., Read, Charmaine I., Van Herwerden, Lynne, and Bellwood, David R. (2012) The role of peripheral endemism in species diversification: evidence from the coral reef fish genus Anampses (Family: Labridae). Molecular Phylogenetics and Evolution, 62 (2). pp. 653-663.

Hughes, Terry (2011) Askö in Stanford 2000: commentary by Terry Hughes. In: Söderqvist, Tore, Sundbaum, Anna, Folke, Carl, and Mäler, Karl-Göran, (eds.) Bringing Ecologists and Economists Together: the Askö meetings and papers. Springer, Dordrecht, The Netherlands, pp. 163-164.

Hoogenboom, M.O., Connolly, S.R., and Anthony, K.R.N. (2011) Biotic and abiotic correlates of tissue quality for common scleractinian corals. Marine Ecology Progress Series, 438. pp. 119-128.

Hobbs, J-P. A., Jones, G.P., and Munday, P.L. (2011) Extinction risk in endemic marine fishes. Conservation Biology, 25 (5). pp. 1053-1055.

Hsieh, Hernyi J., Chen, Koa-Song, Lin , Yihan I., Huang , Yuanchao A., Baird, Andrew H., Tsai , Wan-Sen, Su, Wei-Cheng, and Chen, Chaolun A. (2011) Establishment of a No-take area (NTA) could not guarantee the preservation of coral communities in Chinwan Inner Bay, Penghu, Taiwan. Zoological Studies, 50 (4). pp. 443-453.

Hadfield, Kerry A., Bruce, Niel, and Smit, Nico J. (2011) Cymothoa hermani sp. nov. (Isopoda, Cymothoidae, Crustacea), a parasitic isopod, collected off the Zanzibar coast, Tanzania from the mouth of a parrotfish (Scaridae). Zootaxa, 2876. pp. 57-68.

Helyar, S.J., Hemmer-Hansen, J., Bekkevold, D., Taylor, M.I., Ogden, R., Limborg, M.T., Cariani, A., Maes, G.E., Diopere, E., Carvalho, G.R., and Nielsen, E.E. (2011) Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges. Molecular Ecology Resources, 11 (S1). pp. 123-136.

Hoey, Andrew S., and Bellwood, David R. (2011) Suppression of herbivory by macroalgal density: a critical feedback on coral reefs? Ecology Letters, 14 (3). pp. 267-273.

Huang, Y.-C.A., Hsieh, H.J., Huang, S.-C., Meng, P.-J., Chen, Y.-S., Keshavmurthy, S., Nozawa, Y., and Chen, C.A. (2011) Nutrient enrichment caused by marine cage culture and its influence on subtropical coral communities in turbid waters. Marine Ecology Progress Series, 423. pp. 83-93.

Hughes, Terry (2011) The future of marine governance. Solutions, 2 (1). pp. 1-3.

Huang, Danwei, Licuanan, Wilfredo Y., Baird, Andrew H. , and Fukami, Hironobu (2011) Cleaning up the 'Bigmessidae': molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae. BMC Evolutionary Biology, 11. 37. pp. 1-13.

Horne, John Barton (2011) Evolutionary and ecological genetic patterns of widespread unicornfishes: investigations of the non-geographic clades phenomenon. PhD thesis, James Cook University.

Hoey, Andrew, Pratchett, Morgan, and Cvitanovic, Christopher (2011) High macroalgal cover and low coral recruitment undermines the potential resilience of the world's southernmost coral reef assemblages. PLoS ONE, 6 (10). e25824.

Hagihara, Rie, Jones, Rhondda, Sheppard, James, Hodgson, Amanda, and Marsh, Helene (2011) Minimizing errors in the analysis of dive recordings from shallow-diving animals. Journal of Experimental Marine Biology and Ecology, 399 (2). pp. 173-181.

Hamann, Mark, Grech, Alana, Wolanski, Eric, and Lambrechts, Jonathan (2011) Modelling the fate of marine turtle hatchlings. Ecological Modelling, 222 (8). pp. 1515-1521.

Hoeke, Ron K., Jokiel, Paul L., Buddemeier, Robert W., and Brainard, Russell E. (2011) Projected changes to growth and mortality of Hawaiian corals over the next 100 years. PLoS ONE, 6 (3). e18038. pp. 1-13.

Hobbs, Jean-Paul A. (2011) Reef fishes on isolated islands: community structure, endemism and extinction. PhD thesis, James Cook University.

Hughes, T.P., Bellwood, D.R., Baird, A.H., Brodie, J., Bruno, J.F., and Pandolfi, J.M. (2011) Shifting base-lines, declining coral cover, and the erosion of reef resilience: comment on Sweatman et al. (2011). Coral Reefs, 30 (3). pp. 653-660.

Hobbs, J.-P. A., and McDonald, C.A. (2010) Increased seawater temperature and decreased dissolved oxygen triggers fish kill at the Cocos (Keeling) Islands, Indian Ocean. Journal of Fish Biology, 77 (6). pp. 1219-1229.

Hoogenboom, Mia, Rodolfo-Metalpa, Riccardo, and Ferrier-Pagès, Christine (2010) Co-variation between autotrophy and heterotrophy in the Mediterranean coral Cladocora caespitosa. Journal of Experimental Biology, 213 (14). pp. 2399-2409.

Hobbs, Jean-paul, and Van Herwerden, Lynne (2010) Evolutionary novelty at range edges for coral reef organisms. Science, 328 (5985). p. 1558.

Hutchinson, N., and Rhodes, K.L. (2010) Home range estimates for squaretail coralgrouper, Plectropomus areolatus (Rüppell 1830). Coral Reefs, 29 (2). pp. 511-519.

Hutchinson, Neil, Hunt, Taylor, and Morris, Liz (2010) Seagrass and Reef Program for Port Phillip Bay: temperate reefs literature review. Report. Victorian Department of Primary Industries, Melbourne, VIC, Australia.

Hobbs, Jean-Paul A., Ayling, Anthony, Choat, J. Howard, Gilligan, Justin J., McDonald, Christian A., Neilson, Joseph, and Newman, Stephen J. (2010) New records of marine fishes illustrate the biogeographic importance of Christmas Island, Indian Ocean. Zootaxa, 2422. pp. 63-68.

Hobbs, Jean-Paul, and Frisch, Ashley J. (2010) Coral disease in the Indian Ocean: taxonomic susceptibility, spatial distribution and the role of host density on the prevalence of white syndrome. Diseases of Aquatic Organisms, 89 (1). pp. 1-8.

Holmes, Thomas H., and McCormick, Mark I. (2010) Size-selectivity of predatory reef fish on juvenile prey. Marine Ecology Progress Series, 399. pp. 273-283.

Halford, Andrew Robert (2010) Disturbance effects on tropical reef fish assemblages at large spatial and temporal scales. PhD thesis, James Cook University.

Hamann, M., Godfrey, M.H., Seminoff, J.A., Arthur, K., Barata, P.C.R., Bjorndal, K.A., Bolten, A.B., Broderick, A.C., Campbell, L.M., Carreras, C., Casale, P., Chaloupka, M., Chan, S.K.F, Coyne, M.S., Crowder, L.B., Diez, C.E., Dutton, P.H., Epperly, S.P., FitzSimmons, N.N., Formia, A., Girondot, M., Hays, G.C., Cheng, I.J., Kaska, Y., Lewison, R., Mortimer, J.A., Nichols, W.J., Reina, R.D., Shanker, K., Spotila, J.R., Tomás, J., Wallace, B.P., Work, T.M., Zbinden, J., and Godley, B.J. (2010) Global research priorities for sea turtles: informing management and conservation in the 21st century. Endangered Species Research, 11 (3). pp. 245-269.

Hazevoet, Cornelis J., Monteiro, Vanda, López, Pedro, Varo, Nuria, Torda, Gergely, Berrow, Simon, and Gravanita, Barbara (2010) Recent data on whales and dolphins (Mammalia: Cetacea) from the Cape Verde Islands, including records of four taxa new to the archipelago. Zoologia Caboverdiana, 1 (2). pp. 75-99.

Hoogenboom, M., Beraud, E., and Ferrier-Pagès, C. (2010) Relationship between symbiont density and photosynthetic carbon acquisition in the temperate coral Cladocora caespitosa. Coral Reefs, 29 (1). pp. 21-29.

Holmes, Thomas H., and McCormick, Mark I. (2010) Smell, learn and live: the role of chemical alarm cues in predator learning during early life history in a marine fish. Behavioural Processes, 83 (3). pp. 299-305.

Hoey, Andrew Scott (2010) The ecosystem role of macroalgal browsing fishes on coral reefs. PhD thesis, James Cook University.

Hoogenboom, Mia O., Connolly, Sean R., and Anthony, Kenneth R.N. (2009) Effects of photoacclimation on the light niche of corals: a process-based approach. Marine Biology, 156 (12). pp. 2493-2503.

Hobbs, J-P.A., Frisch, A.J., Hamanaka, T., McDonald, C.A., Gilligan, J.J., and Neilson, J. (2009) Seasonal aggregation of juvenile whale sharks (Rhincodon typus) at Christmas Island, Indian Ocean. Coral Reefs, 28 (3). p. 577.

Hughes, Terry (2009) Confronting the global decline of coral reefs. In: Duarte, Carlos M., (ed.) Global Loss of Coastal Habitats: rates, causes and consequences. BBVA Foundation, Madrid, pp. 140-166.

Hazel, Julia (2009) Evaluation of fast-acquisition GPS in stationary tests and fine-scale tracking of green turtles. Journal of Experimental Marine Biology and Ecology, 374 (1). pp. 58-68.

Hazel, Julia, Lawler, Ivan R., and Hamann, Mark (2009) Diving at the shallow end: green turtle behaviour in near-shore foraging habitat. Journal of Experimental Marine Biology and Ecology, 371 (1). pp. 84-92.

Hobbs, Jean-Paul A., Frisch, Ashley J., Allen, Gerald R., and van Herwerden, Lynne (2009) Marine hybrid hotspot at Indo-Pacific biogeographic border. Biology Letters, 5 (2). pp. 258-261.

Hoogenboom, Mia O., and Connolly, Sean R. (2009) Defining fundamental niche dimensions of corals: synergistic effects of colony size, light, and flow. Ecology, 90 (3). pp. 767-780.

Holmes, Thomas H., and McCormick, Mark I. (2009) Influence of prey body characteristics and performance on predator selection. Oecologia, 159 (2). pp. 401-413.

Hernaman, V., Probert, P.K., and Robbins, W.D. (2009) Trophic ecology of coral reef gobies: interspecific, ontogenetic, and seasonal comparison of diet and feeding intensity. Marine Biology, 156 (3). pp. 317-330.

Holmes, Thomas (2009) Processes and mechanisms of predatory interactions on newly settled reef fish. PhD thesis, James Cook University.

Hazel, Julia (2009) Turtles and vessels: threat evaluation and behavioural studies of green turtles in near-shore foraging grounds. PhD thesis, James Cook University.

Hughes, Terry (2009) Two degrees from disaster. Sustainability: Australia's Future, 1 (1). pp. 58-60.

Hamel, M.A., McMahon, C.R., and Bradshaw, C.J.A. (2008) Flexible inter-nesting behaviour of generalist olive ridley turtles in Australia. Journal of Experimental Marine Biology and Ecology, 359 (1). pp. 47-54.

Hoey, A. S., and Bellwood, D. R. (2008) Cross-shelf variation in the role of parrotfishes on the Great Barrier Reef. Coral Reefs, 27 (1). pp. 37-47.

Hueter, Robert E., and Simpfendorfer, Colin A. (2008) Case study: trends in blue shark abundance in the western north Atlantic as determined by a fishery-independent survey. In: Camhi, Merry D., Pikitch, Ellen K., and Babcock, Elizabeth A., (eds.) Sharks of the Open Ocean: biology, fisheries & conservation. Blackwell Publishing, Oxford, UK, pp. 236-241.

Hobbs, J.-P.A, and Salmond, J.K. (2008) Cohabitation of Indian and Pacific Ocean species at Christmas and Cocos (Keeling) Islands. Coral Reefs, 27 (4). p. 933.

Harvell, C.D., Woodley, C., Raymundo, L., and Sato, Y. (2008) Detecting and assessing outbreaks. In: Raymundo, Laurie J., Couch, Courtney S., and Harvell, C. Drew, (eds.) Coral Disease Handbook: guidelines for assessment monitoring and management. Coral Reef Targeted Research and Capacity Building for Management Program, pp. 65-74.

Humphrey, C., Weber, M., Lott, C., Cooper, T., and Fabricius, K. (2008) Effects of suspended sediments, dissolved inorganic nutrients and salinity on fertilisation and embryo development in the coral Acropora millepora (Ehrenberg, 1834). Coral Reefs, 27 (4). pp. 837-850.

Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove (2008) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, NSW, Australia.

Haywood, M.D.E., Pitcher, C.R., Ellis, N., Wassenberg, T.J., Smith, G., Forcey, K., McLeod, I., Carter, A., Strickland, C., and Coles, R. (2008) Mapping and characterisation of the inter-reefal benthic assemblages of the Torres Strait. Continental Shelf Research, 28 (16). pp. 2304-2316.

Heatwole, H., and Lukoschek, V. (2008) Reptiles. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 342-348.

Hoegh-Guldberg, Ove, Hughes, Terry, Marsh, Helene, Pandolfi, John, and Possingham, Hugh (2008) Urgent need for improved protection of the Coral Sea. In: Zethovan, Imogen, (ed.) An Australian Coral Sea Heritage Park. Pew Charitable Trusts, Philadelphia, USA, pp. 11-13.

Hamann, Mark, Jessop, Tim S., and Schäuble, Chloe S. (2007) Fuel use and corticosterone dynamics in hatchling green sea turtles (Chelonia mydas) during natal dispersal. Journal of Experimental Marine Biology and Ecology, 353 (1). pp. 13-21.

Hughes, Terence P., Rodrigues, Maria J., Bellwood, David R., Ceccarelli, Daniela, Hoegh-Guldberg, Ove, McCook, Laurence, Moltschaniwskyj, Natalie, Pratchett, Morgan S., Steneck, Robert S., and Willis, Bette (2007) Phase shifts, herbivory, and the resilience of coral reefs to climate change. Current Biology, 17 (4). pp. 360-365.

Hodgson, Amanda J., and Marsh, Helene (2007) Response of dugongs to boat traffic: the risk of disturbance and displacement. Journal of Experimental Marine Biology and Ecology, 340 (1). pp. 50-61.

Hutchinson, Neil, Davies, Mark S., Ng, Jasmine S.S., and Williams, Gray A. (2007) Trail following behaviour in relation to pedal mucus production in the intertidal gastropod Monodonta labio (Linnaeus). Journal of Experimental Marine Biology and Ecology, 349 (2). pp. 313-322.

Hamann, Mark, Limpus, Colin J, and Read, Mark A (2007) Vulnerability of marine reptiles to climate change in the Great Barrier Reef. In: Johnson, Johanna E., and Marshall, Paul A., (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority and Australian Greenhouse Office, Townsville, QLD, Australia, pp. 465-497.

Hamann, Mark, Cuong, Chu The, Hong, Nguyen Duy, Thuoc, Pham, and Thu Hien, Bui Thi (2006) Distribution and abundance of marine turtles in the Socialist Republic of Viet Nam. Biodiversity and Conservation, 15 (11). pp. 3703-3720.

Hart, Michael W., Keever, Carson C., Dartnall, Alan J., and Byrne, Maria (2006) Morphological and genetic variation indicate cryptic species within Lamarck’s little sea star, Parvulastra (=Patiriella) exigua. Biological Bulletin, 210 (2). pp. 158-167.

Hutchinson, Neil, Nagarkar, Sanjay, Aitchison, Jonathan C., and Williams, Gray A. (2006) Microspatial variation in marine biofilm abundance on intertidal rock surfaces. Aquatic Microbial Ecology, 42 (2). pp. 187-197.

Hoolihan, John P., Anandh, Prem, and van Herwerden, Lynne (2006) Mitochondrial DNA analyses of narrow-barred Spanish mackerel (Scomberomorus commerson) suggest a single genetic stock in the ROPME sea area (Arabian Gulf, Gulf of Oman, and Arabian Sea). ICES Journal of Marine Science, 63 (6). pp. 1066-1074.

Holley, David K., Lawler, Ivan R., and Gales, Nicholas J. (2006) Summer survey of dugong distribution and abundance in Shark Bay reveals additional key habitat area. Wildlife Research, 33 (3). pp. 243-250.

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Horne, Michael Gary (2005) Investigation into development and preparation of 'artificial' food particles for tropical rock lobster, Panulirus ornatus, phyllosoma. Masters (Research) thesis, James Cook University.

Hoey, Andrew S., and McCormick, Mark I. (2004) Selective predation for low body condition at the larval-juvenile transition of a coral reef fish. Oecologia, 139 (1). pp. 23-29.

Hodgson, Amanda Jane (2004) Dugong behaviour and responses to human influences. PhD thesis, James Cook University.

Heinsohn, Robert, Lacey, Robert C., Lindenmayer, David B., Marsh, Helene, Kwan, Donna, and Lawler, Ivan R. (2004) Unsustainable harvest of dugongs in Torres Strait and Cape York (Australia) waters: two case studies using population viability analysis. Animal Conservation, 7 (4). pp. 417-425.

Harding, Jeffery A., Almany, Glenn, Houck, Lynne D., and Hixon, Mark A. (2003) Experimental analysis of monogamy in the Caribbean cleaner goby, Gobiosoma evelynae. Animal Behaviour, 65 (5). pp. 865-874.

Hamann, Mark, Limpus, Colin J., and Whittier, Joan M. (2003) Seasonal variation in plasma catecholamines, and adipose tissue lipolysis in adult female green sea turtles. General and Comparative Endocrinology , 130 (3). pp. 308-316.

Hughes, Terry (2003) Biogeographic comparisons of coral faunas. Oceanus, 29 (3-4). pp. 291-301.

Hislop, Nikki Rochelle (2003) Characterisation of anterior patterning genes in the staghorn coral, Acropora millepora(Cnidaria; Anthozoa; Scleractinia). PhD thesis, James Cook University.

Hubble, Marc (2003) The ecological significance of body size in tropical wrasses(Pisces : Labridae). PhD thesis, James Cook University.

Hughes, Terry P., Bellwood, David R., and Connolly, Sean R. (2002) Biodiversity hotspots, centres of endemicity, and the conservation of coral reefs. Ecology Letters, 5 (6). pp. 775-784.

Hill, Jocelyn K. (2002) Reef Check benthic survey error: a case study on the Great Barrier Reef. Masters (Coursework) thesis, James Cook University.

Hughes, Terrence (2001) The collapse of a coral reef: Jamaica. In: Talbot, Frank, and Wilkinson, Clive, (eds.) Coral Reefs, Mangroves and Seagrasses: a sourcebook for managers. Australian Institute of Marine Science, Townsville, QLD, Australia, pp. 99-101.

Horne, Michelle L. (2001) A new seahorse species (Syngnathidae: Hippocampus) from the Great Barrier Reef. Records of the Australian Museum, 53 (2). pp. 243-246.

Hughes, Terry P. (2000) Geology and ecology of coral reefs: book review of "Reef Evolution" by Rachel Wood, 1999, Oxford University Press. Trends in Ecology & Evolution, 15 (3). p. 125.

Hughes, Terry, Szmant, Alina M., Steneck, Robert, Carpenter, Robert, and Miller, Steven (1999) Algal blooms on coral reefs: what are the causes? Limnology and Oceanography, 44 (6). pp. 1583-1586.