A

Anthony, Colin J., McDermott, Grace, Lock, Colin, Miller, Therese, Bentlage, Bastian, and Raymundo, Laurie J. (2024) Depth-independent phenotypic variation of massive Porites coral color morphs. Marine Ecology, 45 (1). e12788.

Anderson-King, K.D., Wayman, C., Stephenson, S., Heron, S.F., Lough, J.M., McWilliam, M., Richardson, L.E., Scott, M.E., and Cantin, N.E. (2023) Branching coral growth and visual health during bleaching and recovery on the central Great Barrier Reef. Coral Reefs, 42. pp. 1113-1129.

Alvarez-Noriega, Mariana, Madin, Joshua S., Baird, Andrew H., Dornelas, Maria, and Connolly, Sean R. (2023) Disturbance-induced changes in population size structure promote coral biodiversity. American Naturalist, 202 (5). pp. 604-615.

Aston, Eoghan (2023) Quantifying and assessing coral reef structural complexity and its role in ecological processes and dynamics using photogrammetry. PhD thesis, James Cook University.

Appert, Collette, Udyawer, Vinay, Simpfendorfer, Colin A., Heupel, Michelle R., Scott, Molly, Currey-Randall, Leanne M., Harborne, Alastair R., Jaine, Fabrice, and Chin, Andrew (2023) Use, misuse, and ambiguity of indices of residence in acoustic telemetry studies. Marine Ecology Progress Series, 714. pp. 27-44.

Arjunwadkar, Chaitanya, Tebbett, Sterling B., Bellwood, David, Bourne, David G., and Smith, Hillary A. (2022) Algal turf structure and composition vary with particulate loads on coral reefs. Marine Pollution Bulletin, 181. 113903.

Andrzejaczek, Samantha, Lucas, Tim. C.D., Goodman, Maurice C., Hussey, Nigel E., Armstrong, Amelia J., Carlisle, Aaron, Coffey, Daniel M., Gleiss, Adrian C., Huveneers, Charlie, Jacoby, David M.P., Meekan, Mark G., Mourier, Johann, Peel, Lauren R., dos Santos Abrantes, Katya, Afonso, Andre S., Ajemian, Matthew J., Anderson, Brooke N., Anderson, Scot D., Araujo, Gonzalo, Armstrong, Asia O., Bach, Pascal, Barnett, Adam, Bennett, Mike B., Bezerra, Natalia A., Bonfil, Ramon, Boustany, Andre M., Bowlby, Heather D., Branco, Ilka, Braun, Camrin D., Brooks, Edward J., Brown, Judith, Burke, Patrick J., Butcher, Paul, Castleton, Michael, Chapple, Taylor K., Chateau, Olivier, Clarke, Maurice, Coelho, Rui, Cortes, Enric, Couturier, Lydie I. E., Cowley, Paul D., Croll, Donald A., Cuevas, Juan M., Curtis, Tobey H., Dagorn, Laurent, Dale, Jonathan J., Daly, Ryan, Dewar, Heidi, Doherty, Philip D., Domingo, Andres, Dove, Alistair D. M., Drew, Michael, Dudgeon, Christine L., Duffy, Clinton A. J., Elliott, Riley G., Ellis, Jim R., Erdmann, Mark, Farrugia, Thomas J., Ferreira, Luciana C., Ferretti, Francesco, Filmalter, John D., Finucci, Brittany, Fischer, Chris, Fitzpatrick, Richard, Forget, Fabien, Forsberg, Kerstin, Francis, Malcolm P., Franks, Bryan R., Gallagher, Austin J., Galvan-Magana, Felipe, Garcia, Mirta L., Gaston, Troy F., Gillanders, Bronwyn M., Gollock, Matthew J., Green, Jonathan R., Green, Sofia, Griffiths, Christopher A., Hammerschlag, Neil, Hasan, Abdi, Hawkes, Lucy A., Hazin, Fabio, Heard, Matthew, Hearn, Alex, Hedges, Kevin J., Henderson, Suzanne M., Holdsworth, John, Holland, Kim N., Howey, Lucy A., Hueter, Robert E., Humphries, Nicholas E., Hutchinson, Melanie, Jaine, Fabrice R. A., Jorgensen, Salvador J., Kanive, Paul E., Labaja, Jessica, Lana, Fernanda O., Lassauce, Hugo, Lipscombe, Rebecca S., Llewellyn, Fiona, Macena, Bruno C. L., Mambrasar, Ronald, McAllister, Jaime D., Phillips, Sophy R. McCully, McGregor, Frazer, McMillan, Matthew N., McNaughton, Lianne M., Mendonca, Sibele A., Meyer, Carl G., Meyers, Megan, Mohan, John A., Montgomery, John C., Mucientes, Gonzalo, Musyl, Michael K., Nasby-Lucas, Nicole, Natanson, Lisa J., O'Sullivan, John B., Oliveira, Paulo, Papastamtiou, Yannis P., Patterson, Toby A., Pierce, Simon J., Queiroz, Nuno, Radford, Craig A., Richardson, Andy J., Richardson, Anthony J., Righton, David, Rohner, Christoph A., Royer, Mark A., Saunders, Ryan A., Schaber, Matthias, Schallert, Robert J., Scholl, Michael C., Seitz, Andrew C., Semmens, Jayson M., Setyawan, Edy, Shea, Brendan D., Shidqi, Rafid A., Shillinger, George L., Shipley, Oliver N., Shivji, Mahmood S., Sianipar, Abraham B., Silva, Joana F., Sims, David W., Skomal, Gregory B., Sousa, Lara L., Southall, Emily J., Spaet, Julia L. Y., Stehfest, Kilian M., Stevens, Guy, Stewart, Joshua D., Sulikowski, James A., Syakurachman, Ismail, Thorrold, Simon R., Thums, Michele, Tickler, David, Tolloti, Mariana T., Townsend, Kathy A., Travassos, Paulo, Tyminski, John P., Vaudo, Jeremy J., Veras, Drausio, Wantiez, Laurent, Weber, Sam B., Wells, R. J. David, Weng, Kevin C., Wetherbee, Bradley M., Williamson, Jane E., Witt, Matthew J., Wright, Serena, Zilliacus, Kelly, Block, Barbara A., and Curnick, David J. (2022) Diving into the vertical dimension of elasmobranch movement ecology. Science Advances, 8 (33).

Armstrong, Eric J., Watson, Sue Ann, Stillman, Jonathon H., and Calosi, Piero (2022) Elevated temperature and carbon dioxide levels alter growth rates and shell composition in the fluted giant clam, Tridacna squamosa. Scientific Reports, 12. 11034.

Able, Kenneth W., Simenstad, Charles A., Strydom, Nadine A., Bradley, Michael, and Sheaves, Marcus (2022) Habitat Use and Connectivity. In: Whitfield, Alan K., Able, Kenneth W., Blaber, Stephen J.M., and Elliott, Michael, (eds.) Fish and Fisheries in Estuaries: A Global Perspective. Wiley-Blackwell, pp. 188-254.

Alderdice, Rachel, Pernice, Mathieu, Cardenas, Anny, Hughes, David J., Harrison, Peter L., Boulotte, Nadine, Chartrand, Katie, Kuehl, Michael, Suggett, David J., and Voolstra, Christian R. (2022) Hypoxia as a physiological cue and pathological stress for coral larvae. Molecular Ecology, 31 (2). pp. 571-587.

Abrego, David, Baird, Andrew H., Howells, Emily J., and Smith, Stephen D.A. (2022) Pools of resilience. Bulletin of Marine Science, 98 (1). pp. 51-52.

Aston, Eoghan A., Duce, Stephanie, Hoey, Andrew S., and Ferrari, Renata (2022) A Protocol for Extracting Structural Metrics From 3D Reconstructions of Corals. Frontiers in Marine Science, 9. 854395.

Abhik, Santra, Hope, Pandora, Hendon, Harry H., Hutley, Lindsay B., Johnson, Stephanie, Drosdowsky, Wasyl, Brown, Josephine R, and Duke, Norman C. (2021) Influence of the 2015–2016 El Niño on the record‑breaking mangrove dieback along northern Australia coast. Scientific Reports, 11. 20411.

Ashwood, Lauren M., Mitchell, Michela L., Madio, Bruno, Hurwood, David A., King, Glenn F., Undheim, Eivind A.B., Norton, Raymond S., and Prentis, Peter J. (2021) Tentacle morphological variation coincides with differential expression of toxins in sea anemones. Toxins, 13 (7). 452.

Assis, Juliana M., Abreu, Fernanda, Villela, Helena M.D., Barno, Adam, Valle, Rafael F., Vieira, Rayssa, Taveira, Igor, Duarte, Gustavo, Bourne, David G., Høj, Lone, and Peixoto, Raquel S. (2020) Delivering beneficial microorganisms for corals: rotifers as carriers of probiotic bacteria. Frontiers In Microbiology, 11. 608506.

Allen-Ankins, Slade, and Stoffels, Rick J. (2020) Effects of current and future climates on the growth dynamics and distributions of two riverine fishes. Aquatic Conservation: marine and freshwater ecosystems, 31 (1). pp. 185-197.

Allard, Sarah M., Costa, Matthew T., Bulseco, Ashley N., Helfer, Véronique, Wilkins, Laetitia G.E., Hassenrück, Christiane, Zengler, Karsten, Zimmer, Martin, Erazo, Natalia, Mazza Rodrigues, Jorge L., Duke, Norman, Melo, Vânia M.M., Vanwonterghem, Inka, Junca, Howard, Makonde, Huxley M., Jiménez, Diego Javier, Tavares, Tallita C.L., Fusi, Marco, Daffonchio, Daniele, Duarte, Carlos M., Peixoto, Raquel S., Rosado, Alexandre S., Gilbert, Jack A., and Bowman, Jeff (2020) Introducing the mangrove microbiome initiative: identifying microbial research priorities and approaches to better understand, protect, and rehabilitate mangrove ecosystems. mSystems, 5 (5). e0065820.

Aeby, Greta Smith, Howells, Emily, Work, Thierry, Abrego, David, Williams, Gareth J., Wedding, Lisa M., Caldwell, Jamie M., Moritsch, Monica, and Burt, John A. (2020) Localized outbreaks of coral disease on Arabian reefs are linked to extreme temperatures and environmental stressors. Coral Reefs, 39. pp. 829-846.

Abesamis, Rene A., Utzurrum, Jean Asuncion T., Raterta, Lucille Jean J., and Russ, Garry R. (2020) Shore-fish assemblage structure in the central Philippines from shallow coral reefs to the mesophotic zone. Marine Biology, 167 (12). 185.

Arrigoni, Roberto, Berumen, Michael L., Mariappan, Kiruthiga G., Beck, Pieter S.A., Hulver, Ann Marie, Montano, Simone, Pichon, Michel, Strona, Giovanni, Terraneo, Tullia Isotta, and Benzoni, Francesca (2020) Towards a rigorous species delimitation framework for scleractinian corals based on RAD sequencing: the case study of Leptastrea from the Indo-Pacific. Coral Reefs, 39 (4). pp. 1001-1025.

Armstrong, Amelia J., Armstrong, Asia O., Bennett, Michael B., McGregor, Frazer, Abrantes, Kátya G., Barnett, Adam, Richardson, Anthony J., Townsend, Kathy A., and Dudgeon, Christine L. (2020) The geographic distribution of reef and oceanic manta rays (Mobula alfredi and Mobula birostris) in Australian coastal waters. Journal of Fish Biology, 96 (3). pp. 835-840.

Abrantes, Kátya G., Sheaves, Marcus, and Fries, Jakob (2019) Estimating the value of tropical coastal wetland habitats to fisheries: caveats and assumptions. PLoS ONE, 14 (4). e0215350.

Amir, A. Aldrie, and Duke, Norman C. (2019) Distinct characteristics of canopy gaps in the subtropical mangroves of Moreton Bay, Australia. Estuarine, Coastal and Shelf Science, 222. pp. 66-80.

Attenborough, Rosalind M.F., Hayward, David C., Wiedemann, Ursula, Foret, Sylvain, Miller, David J., and Ball, Eldon E. (2019) Expression of the neuropeptides RFamide and LWamide during development of the coral Acropora millepora in relation to settlement and metamorphosis. Developmental Biology, 446 (1). pp. 56-67.

Aihara, Yusuke, Maruyama, Shinichiro, Baird, Andrew H., Iguchi, Akira, Takahashi, Shunichi, and Minagawa, Jun (2019) Green fluorescence from cnidarian hosts attracts symbiotic algae. Proceedings of the National Academy of Sciences of the United States of America, 116 (6). pp. 2118-2123.

Anderson, Kristen D., Cantin, Neal E., Casey, Jordan M., and Pratchett, Morgan S. (2019) Independent effects of ocean warming versus acidification on the growth, survivorship and physiology of two Acropora corals. Coral Reefs, 38 (6). pp. 1225-1240.

Arrigoni, Roberto, Berumen, Michael L., Stolarski, Jaroslaw, Terraneo, Tullia I., and Benzoni, Francesca (2019) Uncovering hidden coral diversity: a new cryptic lobophylliid scleractinian from the Indian Ocean. Cladistics, 35 (3). pp. 301-328.

Abrantes, Kátya G., Brunnschweiler, Juerg M., and Barnett, Adam (2018) You are what you eat: examining the effects of provisioning tourism on shark diets. Biological Conservation, 224. pp. 300-308.

Abesamis, Rene A., Langlois, Tim, Birt, Matthew, Thillainath, Emma, Bucol, Abner A., Arceo, Hazel O., and Russ, Garry R. (2018) Benthic habitat and fish assemblage structure from shallow to mesophotic depths in a storm-impacted marine protected area. Coral Reefs, 37 (1). pp. 81-97.

Anderson, Kristen D., Cantin, Neal E., Heron, Scott F., Lough, Janice M., and Pratchett, Morgan S. (2018) Temporal and taxonomic contrasts in coral growth at Davies Reef, central Great Barrier Reef, Australia. Coral Reefs, 37 (2). pp. 409-421.

Arrigoni, Roberto, Maggioni, Davide, Montano, Simone, Hoeksema, Bert W., Seveso, Davide, Shlesinger, Tom, Terraneo, Tullia Isotta, Tietbohl, Matthew D., and Berumen, Michael L. (2018) An integrated morpho-molecular approach to delineate species boundaries of Millepora from the Red Sea. Coral Reefs, 37 (4). pp. 967-984.

Anderson, Kristen D., Cantin, Neal E., Heron, Scott F., Pisapia, Chiara, and Pratchett, Morgan S. (2017) Variation in growth rates of branching corals along Australia's Great Barrier Reef. Scientific Reports, 7. 2920. pp. 1-13.

Asson, Danielle, Chapman, John W., and Dumbauld, Brett R. (2017) No evidence that the introduced parasite Orthione griffenis markham, 2004 causes sex change or differential mortality in the native mud shrimp, Upogebia pugettensis (Dana, 1852). Aquatic Invasions, 12 (2). pp. 213-224.

Anticamara, Jonathan A., and Go, Kevin Thomas B. (2017) Impacts of super-typhoon Yolanda on Philippine reefs and communities. Regional Environmental Change, 17 (3). pp. 703-713.

Andrello, Marco, Guilhaumon, François, Albouy, Camille, Parravicini, Valeriano, Scholtens, Joeri, Verley, Philippe, Barange, Manuel, Sumaila, U. Rashid, Manel, Stéphanie, and Mouillot, David (2017) Global mismatch between fishing dependency and larval supply from marine reserves. Nature Communications, 8. 16039.

Almany, Glenn R., Planes, Serge, Thorrold, Simon R., Berumen, Michael L., Bode, Michael, Saenz-Agudelo, Pablo, Bonin, Mary C., Frisch, Ashley J., Harrison, Hugo B., Messmer, Vanessa, Nanninga, Gerrit B., Priest, Mark A., Srinivasan, Maya, Sinclair-Taylor, Tane, Williamson, David H., and Jones, Geoffrey P. (2017) Larval fish dispersal in a coral-reef seascape. Nature Ecology & Evolution, 1 (6). pp. 1-4.

Abesamis, Rene A., Saenz-Agudelo, Pablo, Berumen, Michael L., Bode, Michael, Jadloc, Claro Renato L., Solera, Leilani A., Villanoy, Cesar L., Bernardo, Lawrence Patrick C., Alcala, Angel C., and Russ, Garry R. (2017) Reef-fish larval dispersal patterns validate no-take marine reserve network connectivity that links human communities. Coral Reefs, 36 (3). pp. 791-801.

Allan, Bridie J.M., Domenici, Paolo, Watson, Sue Ann, Munday, Philip L., and McCormick, Mark I. (2017) Warming has a greater effect than elevated CO2 on predator prey interactions in coral reef fish. Proceedings of the Royal Society of London Series B, Biological Sciences, 284 (1857). 20171784. pp. 1-9.

Albert, Simon, Saunders, Megan I., Roelfsema, Chris M., Leon, Javier X., Johnstone, Elizabeth, Mackenzie, Jock R., Hoegh-Guldberg, Ove, Grinham, Alistair R., Phinn, Stuart R., Duke, Norman C, Mumby, Peter J., Kovacs, Eva, and Woodroffe, Colin D. (2017) Winners and losers as mangrove, coral and seagrass ecosystems respond to sea-level rise in Solomon Islands. Environmental Research Letters, 12 (9). 094009. pp. 1-11.

Allen, Jonathan D., Schrage, Kharis R., Foo, Shawna A., Watson, Sue-Ann, and Byrne, Maria (2017) The effects of salinity and pH on fertilization, early development and hatching in the Crown-of-Thorns seastar. Diversity, 9 (1). 13. pp. 1-14.

Aschenbroich, Adélaïde, Michaud, Emma, Stieglitz, Thomas, Fromard, Francois, Gardel, Antoine, Tavares, Marcos, and Thouzeau, Gérard (2016) Brachyuran crab community structure and associated sediment reworking activities in pioneer and young mangroves of French Guiana, South America. Estuarine, Coastal and Shelf Science, 182 (Part A). pp. 60-71.

Adjeroud, Mehdi, Wallace, Carden C., Bosserelle, Pauline, Payri, Claude, Menou, Jean-Louis, and Pichon, Michel (2016) Reefs at the edge: coral community structure around Rapa, southernmost French Polynesia. Marine Ecology, 37 (3). pp. 565-575.

Adkins, Merritt E., Simpfendorfer, Colin A., and Tobin, Andrew J. (2016) Large tropical fishes and their use of the nearshore littoral, intertidal and subtidal habitat mosaic. Marine and Freshwater Research, 67. MF14339. pp. 1534-1545.

Abesamis, Rene A., Stockwell, Brian L., Bernardo, Lawrence P.C., Villanoy, Cesar L., and Russ, Garry R. (2016) Predicting reef fish connectivity from biogeographic patterns and larval dispersal modelling to inform the development of marine reserve networks. Ecological Indicators, 66. pp. 534-544.

Arrigoni, Roberto, Benzoni, Francesca, Huang, Danwei, Fukami, Hironobu, Chen, Chaolun Allen, Berumen, Michael L., Hoogenboom, Mia, Thompson, Damian, Hoeksema, Bert W., Budd, Ann F., Zayasu, Yuna, Terraneo, Tullia I., Kitano, Yuki F., and Baird, Andrew H. (2016) When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus. Contributions to Zoology, 85 (4). pp. 387-422.

B

Burn, D., Hoey, A.S., Matthews, S., Harrison, H.B., and Pratchett, M.S. (2023) Differential bleaching susceptibility among coral taxa and colony sizes, relative to bleaching severity across Australia's Great Barrier Reef and Coral Sea Marine Parks. Marine Pollution Bulletin, 191. 114907.

Borghi, Stefano, Clements, Matthew, Webb, Monique, Bostock, Helen, Webster, Jody M., McNeil, Mardi, Nothdurft, Luke, and Byrne, Maria (2023) Discovery of the dendrophylliid scleractinian Heteropsammia cochlea (Spengler, 1781) in Halimeda bioherms of the Northern Great Barrier Reef. Marine Biodiversity, 53 (3). 39.

Blandford, Makeely Isabel (2023) Effects of habitat fragmentation on coral-associated fish assemblages. PhD thesis, James Cook University.

Blandford, M.I., Hillcoat, K.B., Pratchett, M.S., and Hoey, A.S. (2023) Effects of habitat fragmentation on the recruitment and early post-settlement survival of coral reef fishes. Marine Environmental Research, 183. 105798.

Ban, Natalie C., Darling, Emily S., Gurney, Georgina G., Friedman, Whitney, Jupiter, Stacy D, Lestari, W. Peni, Yulianto, Irfan, Pardede, Sinta, Tarigan, Sukma A.R., Prihatiningsih, Puji, Mangubhai, Sangeeta, Naisilisili, Waisea, Dulunaqio, Sirilo, Naggea, Josheena, Ranaivoson, Ravaka, Agostini, Vera N., Ahmadia, Gabby, Blythe, Jessica, Campbell, Stuart J., Claudet, Joachim, Cox, Courtney, Epstein, Graham, Estradivari, Fox, Margaret, Gill, David, Himes-Cornell, Amber, Jonas, Harry, Mcleod, Elizabeth, Muthiga, Nyawira A., and McClanahan, Tim (2023) Effects of management objectives and rules on marine conservation outcomes. Conservation Biology, 37 (6). e14156.

Baird, Andrew, Prior, Susan, Bridge, Thomas, and Cowman, Peter (2023) First records of coral spawning on Norfolk Island. Galaxea, Journal of Coral Reef Studies, 25 (1). pp. 3-4.

Buñuel, Xavier, Alcoverro, Teresa, Boada, Jordi, Zinkunegi, Leire, Smith, Timothy M., Barrera, Anaïs, Casas, Marc, Farina, Simone, Pérez, Marta, Romero, Javier, Arthur, Rohan, and Pagès, Jordi F. (2023) Indirect grazing-induced mechanisms contribute to the resilience of Mediterranean seagrass meadows to sea urchin herbivory. Oikos, 2023 (6). e09520.

Budd, Alyssa M., Schils, Tom, Cooper, Madalyn K., Lyons, Mitchell B., Mills, Matthew S., Deinhart, Mari E., Le Port, Agnes, Huerlimann, Roger, and Strugnell, Jan M. (2023) Monitoring threatened species with environmental DNA and open ecological data: Local distribution and habitat preferences of scalloped hammerhead sharks (Sphyrna lewini). Biological Conservation, 278 (February 2023). 109881.

Borland, Hayden P., Gilby, Ben L., Henderson, Christopher J., Connolly, Rod M., Gorissen, Bob, Ortodossi, Nicholas L., Rummell, Ashley L., Nagelkerken, Ivan, Pittman, Simon J., Sheaves, Marcus, and Olds, Andrew D. (2023) Seafloor Terrain Shapes the Three-dimensional Nursery Value of Mangrove and Seagrass Habitats. Ecosystems, 26. pp. 442-456.

Brinkman, Diane L., Flores, Florita, Luter, Heidi M., Nordborg, F. Mikaela, Brooks, Maxime, Parkerton, Thomas F., and Negri, Andrew P. (2023) Sensitivity of the Indo-Pacific coral Acropora millepora to aromatic hydrocarbons. Environmental Pollution, 332. 121963.

Bradley, Michael, Sheaves, Marcus, and Waltham, Nathan J. (2023) Urban-industrial seascapes can be abundant and dynamic fish habitat. Frontiers in Marine Science, 9. 1034039.

Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Wang, Juntao, Shen, Jupei, Hou, Enqing, Rezaei Rashti, Mehran, Huang, Qiaoyun, Bainbridge, Zoe, and Stevens, Tom (2023) The origin of suspended particulate matter in the Great Barrier Reef. Nature Communications, 14. 5629.

Bowden, Casey L., Streit, Robert P., Bellwood, David R., and Tebbett, Sterling B. (2022) A 3D perspective on sediment turnover and feeding selectivity in blennies. Marine Pollution Bulletin, 180. 113799.

Buelow, Christina A., Connolly, Rod M., Turschwell, Mischa P., Adame, Maria F., Ahmadia, Gabby N., Andradi-brown, Dominic A., Bunting, Pete, Canty, Steven W.J., Dunic, Jillian C., Friess, Daniel A., Lee, Shing Yip, Lovelock, Catherine E., McClure, Eva C., Pearson, Ryan M., Sievers, Michael, Sousa, Ana, Worthington, Thomas A., and Brown, Christopher J. (2022) Ambitious global targets for mangrove and seagrass recovery. Current Biology, 32 (7). 1641-1649.e3.

Burn, Deborah, Matthews, Samuel, Pisapia, Chiara, Hoey, Andrew S., and Pratchett, Morgan S. (2022) Changes in the incidence of coral injuries during mass bleaching across Australia’s Coral Sea Marine Park. Marine Ecology Progress Series, 682. pp. 97-109.

Baje, Leontine, Chin, Andrew, White, William T., and Simpfendorfer, Colin A. (2022) Dietary overlap of carcharhinid sharks in the Gulf of Papua. Marine and Freshwater Research, 73 (5). pp. 605-614.

Borland, Hayden P., Gilby, Ben L., Henderson, Christopher J., Connolly, Rod M., Gorissen, Bob, Ortodossi, Nicholas L., Rummell, Ashley J., Pittman, Simon J., Sheaves, Marcus, and Olds, Andrew D. (2022) Dredging transforms the seafloor and enhances functional diversity in urban seascapes. Science of the Total Environment, 831. 154811.

Bosch, Nestor E., Monk, Jacquomo, Goetze, Jordan, Wilson, Shaun, Babcock, Russell C., Barrett, Neville, Clough, Jock, Currey-Randall, Leanne M., Fairclough, David V., Fisher, Rebecca, Gibbons, Brooke A., Harasti, David, Harvey, Euan S., Heupel, Michelle R., Hicks, Jamie L., Holmes, Thomas H., Huveneers, Charlie, Ierodiaconou, Daniel, Jordan, Alan, Knott, Nathan A., Malcolm, Hamish A., McLean, Dianne, Meekan, Mark, Newman, Stephen J., Radford, Ben, Rees, Matthew J., Saunders, Benjamin J., Speed, Conrad W., Travers, Michael J., Wakefield, Corey B., Wernberg, Thomas, and Langlois, Tim J. (2022) Effects of human footprint and biophysical factors on the body-size structure of fished marine species. Conservation Biology, 36 (2). e13807.

Bradley, Michael, Nagelkerken, Ivan, Baker, Ronald, Travers, Michael, and Sheaves, Marcus (2022) Local Environmental Context Structures Animal-Habitat Associations Across Biogeographic Regions. Ecosystems, 25. pp. 237-251.

Barnes, Michele L., Datta, Amber, Morris, Sheriden, and Zethoven, Imogen (2022) Navigating climate crises in the Great Barrier Reef. Global Environmental Change, 74. 102494.

Benthuysen, Jessica A., Emslie, Michael J., Currey-Randall, Leanne M., Cheal, Alistair J., and Heupel, Michelle R. (2022) Oceanographic influences on reef fish assemblages along the Great Barrier Reef. Progress in Oceanography, 208. 102901.

Barrios-Garrido, Hector, Arias-Ortiz, Angela, Balladares, Clemente, Espinoza-Rodriguez, Ninive, Garcia-Cruz, Marco, Gonzalez, Maria F., Pulido-Petit, Graciela, Rojas-Cañizales, Daniela, Rondon-Medicci, Maria, Vernet, Pedro, and Wildermann, Natalie E. (2022) Records of Olive Ridley Marine Turtles (Lepidochelys olivacea Eschscholtz 1829) in Venezuelan Waters: A Review of Historical Data Sets and Threats. Chelonian Conservation and Biology, 21 (1). pp. 136-140.

Bigal, Eyal, Galili, Ori, van Rijn, Itai, Rosso, Massimiliano, Cleguer, Christophe, Hodgson, Amanda, Scheinin, Aviad, and Tchernov, Dan (2022) Reduction of Species Identification Errors in Surveys of Marine Wildlife Abundance Utilising Unoccupied Aerial Vehicles (UAVs). Remote Sensing, 14 (16). 4118.

Botté, Emmanuelle S., Cantin, Neal E., Mocellin, Veronique J.L., O’Brien, Paul A., Rocker, Melissa M., Frade, Pedro R., and Webster, Nicole S. (2022) Reef location has a greater impact than coral bleaching severity on the microbiome of Pocillopora acuta. Coral Reefs, 41 (1). pp. 63-79.

Balladares, Clemente, Rueda-Roa, Digna, Rodríguez, Diego, Muller-Karger, Frank, and Barrios-Garrido, Hector (2022) Seasonal factors affecting sea turtle nesting in the Southeastern Caribbean Sea (Gulf of Paria, Venezuela). Ocean and Coastal Research, 70. e22032.

Bergstrom, Dana M., Wienecke, Barbara C., van der Hoff, John, Hughes, Lesley, Lindenmayer, David, Ainsworth, Tracy, Baker, Christopher M., Bland, Lucie, Bowman, David, Brooks, Shaun T., Canadell, Josep G., Constable, Andrew J., Dafforn, Katherine A., Depledge, Michael H., Dickson, Catherine R., Duke, Norman, Helmstedt, Kate J., Holz, Andres, Johnson, Craig, Mcgeoch, Melodie, Melbourne-thomas, Jessica, Morgain, Rachel, Nicholson, Emily, Prober, Suzanne, Raymond, Ben, Ritchie, Euan, Robinson, Sharon, Ruthrof, Katinka X., Setterfield, Samantha A., Sgro, Carla M., Stark, Jonathan S., Travers, Toby, Trebilco, Rowan, Ward, Delphi F.L., Wardle, Glenda, Williams, Kristen, Zylstra, Phillip J., and Shaw, Justine D. (2021) Ecosystem collapse from the tropics to the Antarctic: an assessment and response framework. Global Change Biology, 27. pp. 1692-1703.

Brunner, Christopher, Uthicke, Sven, Ricardo, Gerard F., Hoogenboom, Mia O., and Negri, Andrew P. (2021) Climate change doubles sedimentation-induced coral recruit mortality. Science of the Total Environment, 768. 143897.

Bartes, Saia, Simpfendorfer, Colin, Walker, Terence I., King, Carissa, Loneragan, Neil, and Braccini, Matías (2021) Conventional tagging of sharks in Western Australia: the main commercial species exhibit contrasting movement patterns. Marine and Freshwater Research, 72 (11).

Berry, K.L.E., Hess, S., Clark, T.D., Wenger, A.S., Hoogenboom, M.O., and Negri, A.P. (2021) Effects of suspended coal particles on gill structure and oxygen consumption rates in a coral reef fish. Marine Pollution Bulletin, 169. 112459.

Bauman, Andrew G., Hoey, Andrew S., Dunshea, Glenn, Fong, Jenny, Chan, Ian Z.W., and Todd, Peter A. (2021) Fear effects and group size interact to shape herbivory on coral reefs. Functional Ecology, 35 (9). pp. 1985-1997.

Barrios-Garrido, Hector, De Turris-Morales, Kareen, and Espinoza-Rodriguez, Ninive Edilia (2021) Guiana Dolphin (Sotalia guianensis) in the Maracaibo Lake System, Venezuela: conservation, threats, and population overview. Frontiers in Marine Science, 7. 594021.

Bouyoucos, Ian, Trujillo, Jose E., Weideli, Ornella C., Nakamura, Nao, Mourier, Johann, Planes, Serge, Simpfendorfer, Colin A., and Rummer, Jodie L. (2021) Investigating links between thermal tolerance and oxygen supply capacity in shark neonates from a hyperoxic tropical environment. Science of the Total Environment, 782. 146854.

Balu, Varsha, Messmer, Vanessa, Logan, Murray, Hayashida-Boyles, Alana L., and Uthicke, Sven (2021) Is predation of juvenile crown-of-thorns seastars (Acanthaster cf. solaris) by peppermint shrimp (Lysmata vittata) dependent on age, size, or diet? Coral Reefs, 40. pp. 641-649.

Bouwmeester, Jessica, Edwards, Alasdair J., Guest, James R., Bauman, Andrew G., Berumen, Michael L., and Baird, Andrew H. (2021) Latitudinal variation in monthly-scale reproductive synchrony among Acropora coral assemblages in the Indo-Pacific. Coral Reefs, 40 (5). pp. 1411-1418.

Boote, Chloë Georgina (2021) Molecular insights into a novel coral model, Heliofungia actiniformis. PhD thesis, James Cook University.

Baker, Ronald, and Sheaves, Marcus (2021) Predation in littoral habitats is a complex process: Comment on Whitfield (2020). Marine Ecology - Progress Series, 662. pp. 205-208.

Bonito, Victor E., Baird, Andrew H., Bridge, Tom, Cowman, Peter F., and Fenner, Douglas (2021) Types, topotypes and vouchers are the key to progress in coral taxonomy: Comment on Wepfer et al. (2020). Molecular Phylogenetics and Evolution, 159. 107104.

Borland, Hayden P., Gilby, Ben L., Henderson, Christopher J., Leon, Javier X., Schlacher, Thomas A., Connolly, Rod M., Pittman, Simon J., Sheaves, Marcus, and Olds, Andrew D. (2021) The influence of seafloor terrain on fish and fisheries: a global synthesis. Fish and Fisheries, 22 (4). pp. 707-734.

Bourillon, Bastien, Acou, Anthony, Trancart, Thomas, Belpaire, Claude, Covaci, Adrian, Bustamante, Paco, Faliex, Elisabeth, Amilhat, Elsa, Malarvannan, Govindan, Virag, Laure, Aarestrup, Kim, Bervoets, Lieven, Boisneau, Catherine, Boulenger, Clarisse, Gargan, Paddy, Becerra-Jurado, Gustavo, Lobon-Cervia, Javier, Maes, Gregory E., Pedersen, Michael Ingemann, Poole, Russell, Sjoberg, Niklas, Wickstrom, Hakan, Walker, Alan, Righton, David, and Feunteun, Eric (2020) Assessment of the quality of European silver eels and tentative approach to trace the origin of contaminants - a European overview. Science of the Total Environment, 743. 140675.

Bennett, Mary K., Younes Cardenas, Nicolas, and Joyce, Karen E. (2020) Automating drone image processing to map coral reef substrates using Google Earth Engine. Drones, 4 (3). 50.

Burn, Deborah, Matthews, Samuel, Caballes, Ciemon F., Chandler, Josie F., and Pratchett, Morgan S. (2020) Biogeographical variation in diurnal behaviour of Acanthaster planci versus Acanthaster cf. solaris. PLoS ONE, 15 (2). e0228796.

Bradley, Michael, Nagelkerken, Ivan, Baker, Ronald, and Sheaves, Marcus (2020) Context dependence: a conceptual approach for understanding the habitat relationships of Coastal Marine Fauna. BioScience, 70 (11). pp. 986-1004.

Burn, Deborah (2020) Differential susceptibility of corals to major versus routine disturbances in Australia's Coral Sea. Masters (Research) thesis, James Cook University.

Branconi, Rebecca, Barbasch, Tina A., Francis, Robin K., Srinivasan, Maya, Jones, Geoffrey P., and Buston, Peter M. (2020) Ecological and social constraints combine to promote evolution of non-breeding strategies in clownfish. Communications Biology, 3. 649.

Bouyoucos, Ian Alexander (2020) Ecological energetics of climate change for tropical sharks. PhD thesis, James Cook University.

Brandl, Simon J., Johansen, Jacob L., Casey, Jordan M., Tornabene, Luke, Morais, Renato A., and Burt, John A. (2020) Extreme environmental conditions reduce coral reef fish biodiversity and productivity. Nature Communications, 11. 3832.

Bouyoucos, Ian A., Romain, Martin, Azoulai, Lorine, Eustache, Kim, Mourier, Johann, Rummer, Jodie L., and Planes, Serge (2020) Home range of newborn blacktip reef sharks (Carcharhinus melanopterus), as estimated using mark-recapture and acoustic telemetry. Coral Reefs, 39. pp. 1209-1214.

Burt, J.A., Camp, E.F., Enochs, I.C., Johansen, J.L., Morgan, K.M., Riegl, B., and Hoey, A.S. (2020) Insights from extreme coral reefs in a changing world. Coral Reefs, 39. pp. 495-507.

Bollati, Elena, D'Angelo, Cecilia, Alerdice, Rachel, Pratchett, Morgan, Ziegler, Maren, and Wiedenmann, Jorg (2020) Optical feedback loop involving dinoflagellate symbiont and Scleractinian host drives colorful coral bleaching. Current Biology, 30 (13). pp. 2433-2445.

Brodie, G., Brodie, J., Maata, M., Peter, M., Otiawa, T., and Devlin, M.J. (2020) Seagrass habitat in Tarawa Lagoon, Kiribati: service benefits and links to national priority issues. Marine Pollution Bulletin, 155. 111099.

Barrios-Garrido, H., Becker, P., Bjorndal, K.A., Bolten, A.B., Diez, C.E., Espinoza-rodriguez, N., Fastigi, M., Gray, J., Harrison, E., Hart, K.A., Meylan, A., Meylan, P., Montiel-villalobos, M.G., Morales, F., Nava, M., Palmar, J., Petit-Rodriguez, M.J., Richardson, P., Rodriguez-Clark, K.M., Rojas-Canizales, D., Sandoval, M.G., Valverde, R.A., van Dam, R., Walker, J.T., Wildermann, N., and Hamann, M. (2020) Sources and movements of marine turtles in the Gulf of Venezuela: regional and local assessments. Regional Studies in Marine Science, 36. 101318.

Bernal, Moises A., Schunter, Celia, Lehmann, Robert, Lightfoot, Damien J., Allan, Bridie J.M., Veilleux, Heather D., Rummer, Jodie L., Munday, Philip L., and Ravasi, Timothy (2020) Species-specific molecular responses of wild coral reef fishes during a marine heatwave. Science Advances, 6 (12). eaay3423.

Baker, Ronald, Abrantes, Kátya, and Feller, Ilka (2020) Stable isotopes suggest limited role of wetland macrophyte production supporting aquatic food webs across a mangrove-salt marsh ecotone. Estuaries and Coasts, 2021.

Bellwood, David R., Hemingson, Christopher R., and Tebbett, Sterling B. (2020) Subconscious biases in coral reef fish studies. BioScience, 70 (7). pp. 621-627.

Barbasch, Tina A., Rueger, Theresa, Srinivasan, Maya, Wong, Marian Y.L., Jones, Geoffrey P., and Buston, Peter M. (2020) Substantial plasticity of reproduction and parental care in response to local resource availability in a wild clownfish population. Oikos, 129 (12). pp. 1844-1855.

Bridge, Tom C. L., Huang, Zhi, Przeslawski, Rachel, Tran, Maggie, Siwabessy, Justy, Picard, Kim, Reside, April E., Logan, Murray, Nichol, Scott L., and Caley, M. Julian (2020) Transferable, predictive models of benthic communities informs marine spatial planning in a remote and data-poor region. Conservation Science and Practice, 2 (9). e251.

Baraf, Lauriane M., Pratchett, Morgan S., and Cowman, Peter F. (2019) Ancestral biogeography and ecology of marine angelfishes (F: Pomacanthidae). Molecular Phylogenetics and Evolution, 140. 106596.

Birt, Matthew J., Stowar, Marcus, Currey-Randall, Leanne M., McLean, Dianne L., and Miller, Karen J. (2019) Comparing the effects of different coloured artificial illumination on diurnal fish assemblages in the lower mesophotic zone. Marine Biology, 166. 154.

Bradley, Michael, Baker, Ronald, Nagelkerken, Ivan, and Sheaves, Marcus (2019) Context is more important than habitat type in determining use by juvenile fish. Landscape Ecology, 34. pp. 427-442.

Baker, Ronald, Barnett, Adam, Bradley, Michael, Abrantes, Katya, and Sheaves, Marcus (2019) Contrasting seascape use by a coastal fish assemblage: a multi-method approach. Estuaries and Coasts, 42 (1). pp. 292-307.

Bellwood, David R., Pratchett, Morgan S., Morrison, Tiffany H., Gurney, Georgina G., Hughes, Terry P., Álvarez-Romero, Jorge G., Day, Jon C., Grantham, Ruby, Grech, Alana, Hoey, Andrew S., Jones, Geoffrey P., Pandolfi, John M., Tebbett, Sterling B., Techera, Erika, Weeks, Rebecca, and Cumming, Graeme S. (2019) Coral reef conservation in the Anthropocene: confronting spatial mismatches and prioritizing functions. Biological Conservation, 236. pp. 604-615.

Broadhurst, Matt K., Smith, Timonthy M., Millar, Russell B., Hughes, Brian, Raoult, Vincent, and Gaston, Troy F. (2019) Cumulative selectivity benefits of increasing mesh size and using escape gaps in Australian Portunus armatus traps. Fisheries Management and Ecology, 26 (4). pp. 319-326.

Brandl, Simon J., Tornabene, Luke, Goatley, Christopher H.R., Casey, Jordan M., Morais, Renato A., Côté, Isabelle M., Baldwin, Carole C., Parravicini, Valeriano, Schiettekatte, Nina M.D., and Bellwood, David R. (2019) Demographic dynamics of the smallest marine vertebrates fuel coral reef ecosystem functioning. Science, 364 (6446). pp. 1189-1192.

Budden, Claire, Butler, Ian, Wolfe, Kennedy, Deaker, Dione, Sweatman, Hugh, and Byrne, Maria (2019) Effect of sublethal predation on reproductive output of the crown-of-thorns starfish Acanthaster sp., with an overview of arm damage. Marine Ecology Progress Series, 629. pp. 103-116.

Bouyoucos, Ian A., Simpfendorfer, Colin A., and Rummer, Jodie L. (2019) Estimating oxygen uptake rates to understand stress in sharks and rays. Reviews in Fish Biology and Fisheries, 29 (2). pp. 297-311.

Bauman, Andrew G., Seah, Jovena C.L., Januchowski-Hartley, Fraser A., Hoey, Andrew S., Fong, Jenny, and Todd, Peter A. (2019) Fear effects associated with predator presence and habitat structure interact to alter herbivory on coral reefs. Biology Letters, 15 (10).

Bejarano, Sonia, Pardede, Shinta, Campbell, Stuart J., Hoey, Andrew, and Ferse, Sebastian C.A. (2019) Herbivorous fish rise as a destructive fishing practice falls in an Indonesian marine national park. Ecological Applications, 29 (8). e01981.

Biscere, T., Zampighi, M., Lorrain, A., Jurriaans, S., Foggo, A., Houlbrèque, F., and Rodolfo-Metalpa, R. (2019) High pCO₂ promotes coral primary production. Biology Letters, 15 (7). 20180777.

Barnett, Adam, McAllister, Jamie D., Semmens, Jayson, Abrantes, Kátya, Sheaves, Marcus, and Awruch, Cynthia (2019) Identification of essential habitats: including chimaeras into current shark protected areas. Aquatic Conservation: marine and freshwater ecosystems, 29 (6). pp. 865-880.

Berry, Kathryn L.E., Epstein, Hannah E., Lewis, Phoebe J., Hall, Nora M., and Negri, Andrew P. (2019) Microplastic contamination has limited effects on coral fertilisation and larvae. Diversity, 11 (12). 228.

Bayraktarov, Elisa, Stewart-Sinclair, Phoebe J., Brisbane, Shantala, Boström‐Einarsson, Lisa, Saunders, Megan I., Lovelock, Catherine E., Possingham, Hugh P., Mumby, Peter J., and Wilson, Kerrie A. (2019) Motivations, success, and cost of coral reef restoration. Restoration Ecology, 27 (5). pp. 981-991.

Buerger, P., Weynberg, K.D., Wood-charlson, E.M., Sato, Y., Willis, B.L., and van Oppen, M.J.H. (2019) Novel T4 bacteriophages associated with black band disease in corals. Environmental Microbiology, 21 (6). pp. 1969-1979.

Buchanan, Jack R., Ralph, Gina M., Krupp, Friedhelm, Harwell, Heather, Abdallah, Mohamed, Abdulqader, Ebrahim, Al-Husaini, Mohsen, Bishop, James M., Burt, John A., Choat, John H., Collette, Bruce B., Feary, David A., Hartmann, Stanley A., Iwatsuki, Yukio, Kaymaram, Farhad, Larson, Helen K., Matsuura, Keiichi, Motomura, Hiroyuki, Munroe, Thomas, Russell, Barry, Smith-Vaniz, William, Williams, Jeffrey, and Carpenter, Kent E. (2019) Regional extinction risks for marine bony fishes occurring in the Persian/Arabian Gulf. Biological Conservation, 230. pp. 10-19.

Beasley, Isabel, Cherel, Yves, Robinson, Sue, Betty, Emma, Hagihara, Rie, and Gales, Rosemary (2019) Stomach contents of long-finned pilot whales, Globicephala melas mass-stranded in Tasmania. PLoS One, 14 (1). e0206747.

Bode, Michael, Leis, Jeffrey M., Mason, Luciano B., Williamson, David H., Harrison, Hugo B., Choukroun, Severine, and Jones, Geoffrey P. (2019) Successful validation of a larval dispersal model using genetic parentage data. PLoS Biology, 17 (7). e3000380.

Benham, Claudia F., Beavis, Sara G., and Jackson, Emma L. (2019) Tolerance of tropical seagrasses Zostera muelleri and Halophila ovalis to burial: toward an understanding of threshold effects. Estuarine, Coastal and Shelf Science, 218. pp. 131-138.

Bell, Johann D., Cisneros-Montemayor, Andrés, Hanich, Quentin, Johnson, Johanna E., Lehodey, Patrick, Moore, Bradley R., Pratchett, Morgan S., Reygondeau, Gabriel, Senina, Inna, Virdin, John, and Wabnitz, Colette C.C. (2018) Adaptations to maintain the contributions of small-scale fisheries to food security in the Pacific Islands. Marine Policy, 88. pp. 303-314.

Booth, David J., Poloczanska, Elvira, Donelson, Jennifer M., García Molinos, Jorge, and Burrows, Michael (2018) Biodiversity and climate change in the oceans. In: Phillips, Bruce F., and Perez-Ramirez, Monica, (eds.) Climate Change Impacts on Fisheries and Aquaculture: a global analysis. Wiley-Blackwell, Hoboken, NJ, USA, pp. 63-89.

Brodie, Stephanie, Lédée, Elodie J.I., Heupel, Michelle R., Babcock, Russell C., Campbell, Hamish A., Gledhill, Daniel C., Hoenner, Xavier, Huveneers, Charlie, Jaine, Fabrice R.A., Simpfendorfer, Colin A., Taylor, Matthew D., Udyawer, Vinay, and Harcourt, Robert G. (2018) Continental-scale animal tracking reveals functional movement classes across marine taxa. Scientific Reports, 8. 3717.

Baird, Andrew H., and Thomson, Damian P. (2018) Coral reproduction at Hall Bank, a high latitude coral assemblage in Western Australia. Aquatic Biology, 27. pp. 55-63.

Berthe, Cecile, Waqalevu, Viliame Pita, Latry, Lise, Besson, Marc, Lerouvreur, Franck, Siu, Gilles, Lecellier, Gael, Rummer, Jodie L., Bertucci, Frederic, Iglésias, Samuel, and Lecchini, David (2018) Distribution patterns of ocellated eagle rays, Aetobatus ocellatus, along two sites in Moorea Island, French Polynesia. Cybium, 42 (4). pp. 313-320.

Baird, Andrew H., Álvarez-Noriega, Mariana, Cumbo, Vivian R., Connolly, Sean R., Dornelas, Maria, and Madin, Joshua S. (2018) Effects of tropical storms on the demography of reef corals. Marine Ecology - Progress Series, 606. pp. 29-38.

Boussarie, Germain, Bakker, Judith, Wangensteen, Owen S., Mariani, Stefano, Bonnin, Lucas, Juhel, Jean-Baptiste, Kiszka, Jeremy J., Kulbicki, Michel, Manel, Stephanie, Robbins, William D., Vigliola, Laurent, and Mouillot, David (2018) Environmental DNA illuminates the dark diversity of sharks. Science Advances, 4 (5). eaap9661.

Bode, Michael, Williamson, David H., Harrison, Hugo B., Outram, Nick, and Jones, Geoffrey P. (2018) Estimating dispersal kernels using genetic parentage data. Methods in Ecology and Evolution, 9. pp. 490-501.

Burkepile, Deron E., Rasher B., Douglas, Adam, Thomas C., Hoey, Andrew S., and Hay, Mark E. (2018) Functional variation among parrotfishes: are they complementary or redundant? In: Hoey, Andrew S., and Bonaldo, Roberta M., (eds.) Biology of Parrotfishes. Taylor & Francis, Boca Raton, FL, USA, pp. 134-160.

Burn, Deborah, Pratchett, Morgan S., Heron, Scott F., Thompson, Cassandra A., Pratchett, Deborah J., and Hoey, Andrew S. (2018) Limited cross-shelf variation in the growth of three branching corals on Australia's Great Barrier Reef. Diversity, 10 (4). 122.

Bostrom Einarsson, Lisa, Bonin, Mary C., Munday, Philip L., and Jones, Geoffrey P. (2018) Loss of live coral compromises predator-avoidance behaviour in coral reef damselfish. Scientific Reports, 8. 7795.

Blondeau-Patissier, David, Brando, Vittorio Ernesto, Lønborg, Christian, Leahy, Susannah M., and Dekker, Arnold G. (2018) Phenology of Trichodesmium spp. blooms in the Great Barrier Reef lagoon, Australia, from the ESA-MERIS 10-year mission. PLoS ONE, 13 (12). e0208010.

Bierwagen, Stacy L., Emslie, Michael J., Heupel, Michelle R., Chin, Andrew, and Simpfendorfer, Colin A. (2018) Reef-scale variability in fish and coral assemblages on the central Great Barrier Reef. Marine Biology, 165. 144.

Brooker, Rohan M., Muñoz Ruiz, Enid C., Sih, Tiffany L., and Dixson, Danielle L. (2018) Shelter availability mediates decorating in the majoid crab, Camposcia retusa. Behavioral Ecology, 29 (1). pp. 179-185.

Buelow, Christina A., Reside, April E., Baker, Ronald, and Sheaves, Marcus (2018) Stable isotopes reveal opportunistic foraging in a spatiotemporally heterogeneous environment: bird assemblages in mangrove forests. PLoS ONE, 13 (11). e0206145.

Barton, Diane P., Taillebois, Laura, Taylor, Jonathan, Crook, David A., Saunders, Thor, Hearnden, Mark, Greig, Alan, Welch, David J., Newman, Stephen J., Travers, Michael J., Saunders, Richard J., Errity, Chris, Maher, Safia, Dudgeon, Christine, and Ovenden, Jennifer (2018) Stock structure of Lethrinus laticaudis (Lethrinidae) across northern Australia determined using genetics, otolith microchemistry and parasite assemblage composition. Marine and Freshwater Research, 69 (4). pp. 487-501.

Bierwagen, Stacy L., Heupel, Michelle R., Chin, Andrew, and Simpfendorfer, Colin A. (2018) Trophodynamics as a tool for understanding coral reef ecosystems. Frontiers in Marine Science, 5.

Baird, Andrew H., Madin, Joshua, Álvarez-Noriega, Mariana, Fontoura, Luisa, Kerry, James T., Kuo, Chao-Yang, Precoda, Kristin, Torres-Pulliza, Damaris, Woods, Rachael M., Zawada, Kyle J.A., and Hughes, Terry P. (2018) A decline in bleaching suggests that depth can provide a refuge from global warming in most coral taxa. Marine Ecology - Progress Series, 603. pp. 257-264.

Brandl, Simon J., Goatley, Christopher H.R., Bellwood, David R., and Tornabene, Luke (2018) The hidden half: ecology and evolution of cryptobenthic fishes on coral reefs. Biological Reviews, 93 (4). pp. 1846-1873.

Bellwood, David R., Tebbett, Sterling B., Bellwood, Orpha, Mihalitsis, Michalis, Morais, Renato A., Streit, Robert P., and Fulton, Christopher J. (2018) The role of the reef flat in coral reef trophodynamics: past, present, and future. Ecology and Evolution, 8 (8). pp. 4108-4119.

Bento, Rita, Feary, David A., Hoey, Andrew S., and Burt, John A. (2017) Settlement patterns of corals and other benthos on reefs with divergent environments and disturbances histories around the northeastern Arabian Peninsula. Frontiers in Marine Science, 4. 305.

Blasiak, Robert, Spijkers, Jessica, Tokunaga, Kanae, Pittman, Jeremy, Yagi, Nobuyuki, and Österblom, Henrik (2017) Climate change and marine fisheries: least developed countries top global index of vulnerability. PLoS ONE, 12 (6). e0179632.

Brodersen, Kasper E., Hammer, Katherine J., Schrameyer, Verena, Floytrup, Anja, Rasheed, Michael, Ralph, Peter J., Kühl, Michael, and Pedersen, Ole (2017) Sediment resuspension and deposition on seagrass leaves impedes internal plant aeration and promotes phytotoxic H2S intrusion. Frontiers in Plant Science, 8. 657. pp. 1-13.

Bender, Mariana G., Leprieuer, Fabien, Mouillot, David, Kulbicki, Michel, Parravicini, Valeriano, Pie, Marcio R., Barneche, Diego R., Oliveira-Santos, Luiz Gustavo R., and Floeter, Sergio R. (2017) Isolation drives taxonomic and functional nestedness in tropical reef fish faunas. Ecography, 40 (3). pp. 425-435.

Blowes, Shane A., Pratchett, Morgan S., and Connolly, Sean R. (2017) Aggression, interference, and the functional response of coral-feeding butterflyfishes. Oecologia, 184 (3). pp. 675-684.

Brooker, Rohan M., Sih, Tiffany L., and Dixson, Danielle (2017) Contact with seaweed alters prey selectivity in a coral-feeding reef fish. Marine Ecology - Progress Series, 580. pp. 239-244.

Barrios Garrido, Héctor, Bolivar, Jossimar, Benavides, Leonardo, Viloria, Jessica, Dugarte, Fabby, and Wildermann, Natalie (2017) Evaluación de la pesquería de palangre artesanal y su efecto en la raya látigo (Dasyatis guttata) en Isla Zapara, Golfo de Venezuela / Evaluation of the artisanal longline fishery and its effect on the longnose stingray (Dasyatis guttata) in Zapara Island, Gulf of Venezuela. Latin American Journal Of Aquatic Research, 45 (2). pp. 302-310.

Bradley, Michael, Baker, Ronnie, and Sheaves, Marcus (2017) Hidden components in tropical seascapes: deep-estuary habitats support unique fish assemblages. Estuaries and Coasts, 40 (4). pp. 1195-1206.

Bauman, Andrew G., Hoey, Andrew S., Dunshea, Glenn, Feary, David A., Low, Jeffrey, and Todd, Peter A. (2017) Macroalgal browsing on a heavily degraded, urbanized equatorial reef system. Scientific Reports, 7 (1). 8352.

Blowes, Shane A., Pratchett, Morgan S., and Connolly, Sean R. (2017) No change in subordinate butterflyfish diets following removal of behaviourally dominant species. Coral Reefs, 36. pp. 213-222.

Benzeev, Rayna, Hutchinson, Neil, and Friess, Daniel A. (2017) Quantifying fisheries ecosystem services of mangroves and tropical artificial urban shorelines. Hydrobiologia, 803 (1). pp. 225-237.

Bonaldo, Roberta M., Pires, Mathias M., Guimaraes, Paulo Roberto, Hoey, Andrew S., and Hay, Mark E. (2017) Small Marine Protected Areas in Fiji provide refuge for reef fish assemblages, feeding groups, and corals. PLoS One, 12 (1). e017063.

Bergseth, Brock J., Williamson, David H., Russ, Garry R., Sutton, Stephen G., and Cinner, Joshua E. (2017) A social-ecological approach to assessing and managing poaching by recreational fishers. Frontiers in Ecology and the Environment, 15 (2). pp. 67-73.

Beaman, Robin J., Bridge, Tom C.L., Lüter, Carsten, Reitner, Joachim, and Wörheide, Gert (2016) Spatial patterns in the distribution of benthic assemblages across a large depth gradient in the Coral Sea, Australia. Marine Biodiversity, 46 (4). pp. 795-808.

Brandl, Simon J., and Bellwood, David R. (2016) Microtopographic refuges shape consumer‑producer dynamics by mediating consumer functional diversity. Oecologia, 182 (1). pp. 203-217.

Bento, Rita, Hoey, Andrew S., Bauman, Andrew G., Feary, David A., and Burt, John A. (2016) The implications of recurrent disturbances within the world's hottest coral reef. Marine Pollution Bulletin, 105 (2). pp. 466-472.

Barrios-Garrido, Héctor, Petit-Rodríguez, María José, Vera, Flor, Montiel-Villalobos, María Gabriela, Morán, Lisandro, and Wildermann, Natalie (2016) Riqueza y distribución de corales pétreos en la costa noroccidental del Golfo de Venezuela / Richness and distribution of stony corals in the north-western coast of the Gulf of Venezuela. Ciencia, 24 (1). pp. 27-40.

Bridge, Tom C.L., Luiz, Osmar J., Coleman, Richard R., Kane, Corinne N., and Kosaki, Randall K. (2016) Ecological and morphological traits predict depth-generalist fishes on coral reefs. Proceedings of the Royal Society of London Series B, Biological Sciences, 283 (1823). pp. 1-9.

Babcock, Russell C., Dambacher, Jeffrey M., Morello, Elisabetta B., Plaganyi, Eva E., Hayes, Keith R., Sweatman, Hugh P.A., and Pratchett, Morgan S. (2016) Assessing different causes of crown-of-thorns starfish outbreaks and appropriate responses for management on the Great Barrier Reef. PLoS ONE, 11 (12). e0169048. pp. 1-20.

Bonin, Mary C., Saenz-Agudelo, Pablo, Harrison, Hugo B., Nanninga, Gerrit B., van der Meer, Martin H., Mansour, Hicham, Perumal, Sadhavisan, Jones, Geoffrey P., and Berumen, Michael L. (2016) Characterization and cross-amplification of microsatellite markers in four species of anemonefish (Pomacentridae, Amphiprion spp.). Marine Biodiversity, 46 (1). pp. 135-140.

Buck, Alexander C.E., Gardiner, Naomi M., and Boström-Einarsson, Lisa (2016) Citric acid injections: an accessible and efficient method for controlling outbreaks of the crown-of-thorns starfish Acanthaster cf. solaris. Diversity, 8 (28). d8040028. pp. 1-12.

Brooker, Rohan M., Brandl, Simon J., and Dixson, Danielle L. (2016) Cryptic effects of habitat declines: coral-associated fishes avoid coral-seaweed interactions due to visual and chemical cues. Scientific Reports, 6. 18842. pp. 1-8.

Brown, Kelly T., Seeto, Johnson, Lal, Monal M., and Miller, Cara E. (2016) Discovery of an important aggregation area for endangered scalloped hammerhead sharks, Sphyrna lewini, in the Rewa River estuary, Fiji Islands. Pacific Conservation Biology, 22. pp. 242-248.

Brodie, Jon, and Pearson, Richard G. (2016) Ecosystem health of the Great Barrier Reef: time for effective management action based on evidence. Estuarine, Coastal and Shelf Science, 183. pp. 438-451.

Brandl, Simon J., Emslie, Michael J, Ceccarelli, Daniela M., and Richards, Zoe T. (2016) Habitat degradation increases functional originality in highly diverse coral reef fish assemblages. Ecosphere, 7 (11). e01557. pp. 1-19.

Bennett, Holly M., Altenrath, Christine, Woods, Lisa, Davy, Simon K., Webster, Nicole S., and Bell, James J. (2016) Interactive effects of temperature and pCO2 on sponges: from the cradle to the grave. Global Change Biology, 23. pp. 2031-2046.

Beasley, Isabel, Jedensjo, Maria, Wijaya, Gede Mahendra, Anamiato, Jim, Kahn, Benjamin, and Kreb, Danielle (2016) Observations on Australian humpback dolphins (Sousa sahulensis) in waters of the Pacific Islands and New Guinea. Advances in Marine Biology, 73. pp. 219-271.

Bauman, Andrew G., Dunshea, Glenn, Feary, David A., and Hoey, Andrew S. (2016) Prickly business: abundance of sea urchins on breakwaters and coral reefs in Dubai. Marine Pollution Bulletin, 105 (2). pp. 459-465.

Babcock, Russell C., Milton, David A., and Pratchett, Morgan S. (2016) Relationships between size and reproductive output in the crown‑of‑thorns starfish. Marine Biology, 163. 234. pp. 1-7.

Berry, Kathryn L.E., Hoogenboom, Mia O., Flores, Florita, and Negri, Andrew P. (2016) Simulated coal spill causes mortality and growth inhibition in tropical marine organisms. Scientific Reports, 6. 25894. pp. 1-8.

Baird, Mark E., Adams, Matthew P., Babcock, Russell C., Oubelkheir, Kadija, Mongin, Mathieu, Wild-Allen, Karen A., Skerratt, Jennifer, Robson, Barbara J., Petrou, Katherina, Ralph, Peter J., O’Brien, Katherine R., Carter, Alex B., Jarvis, Jessie C., and Rasheed, Michael A. (2016) A biophysical representation of seagrass growth for application in a complex shallow-water biogeochemical model. Ecological Modelling, 325. pp. 13-27.

Bruinzeel, Leo W., van de Pol, Martijn, and Trierweiler, Christiane (2006) Competitive abilities of oystercatchers (Haematopus ostralegus) occupying territories of different quality. Journal of Ornithology, 147. pp. 457-463.

Bruinzeel, Leo W., and van de Pol, Martijn (2004) Site attachment of floaters predicts success in territory acquisition. Behavioral Ecology, 15 (2). pp. 290-296.

Bruinzeel, Leo, and van de Pol, Martijn (2003) Population decline of Oystercatchers on Schiermonnikoog. Limosa, 76 (1). 25 - 26.

C

Collins, William, Bellwood, David, Morais Araujo, Renato, Waltham, Nathan, and Siqueira Correa, Alexandre (2024) Diel movement patterns in nominally nocturnal coral reef fishes (Haemulidae and Lutjanidae): Intra vs. Interspecific variation. Coral Reefs. (In Press)

Clements, Kendall D., German, Donovan P., Piche, Jacinthe, Tribollet, Aline, and Choat, John Howard (2024) Integrating ecological roles and trophic diversification on coral reefs: multiple lines of evidence identify parrotfishes as microphages. Biological Journal of the Linnean Society. (In Press)

Collins, William P., Bellwood, David R., and Morais, Renato A. (2024) Small coral reef fishes with large ecological footprints. Coral Reefs, 43. pp. 233-242.

Cumming, Graeme, James, Nicholas L., Chua, Chia-Miin, and Huertas, Victor (2024) A framework and review of evidence of the importance of coral reefs for marine birds in tropical ecosystems. Ecology and Evolution, 14 (8). e70165.

Cumming, Graeme S., and Bellwood, David R. (2023) Broad-scale analysis of fish community data suggests critical need to support regional connectivity of coral reefs. Ecological Applications, 33 (4). e2849.

Cardozo-Ferreira, Gabriel C., Mendes, Thiago C., Cordeiro, César A.M.M., Giglio, Vinicius J., Magris, Rafael A., Choat, John H., Clements, Kendall D., Eggertsen, Linda, Ferreira, Carlos E.L., and Francini-Filho, Ronaldo B. (2023) Comment on the article “Effect of human impact on coral reef herbivorous fish niche” by Leitão et al. (2023). Marine Biology, 170 (11). 145.

Canning, Adam D., Smart, James C.R., Dyke, Joshua, Curwen, Graeme, Hasan, Syezlin, and Waltham, Nathan J. (2023) Constructed Wetlands Suitability for Sugarcane Profitability, Freshwater Biodiversity and Ecosystem Services. Environmental Management, 71. pp. 304-320.

Cresswell, B.J., Galbraith, G.F., Harrison, H.B., McCormick, M.I., and Jones, G.P, (2023) Coral reef pinnacles act as ecological magnets for the abundance, diversity and biomass of predatory fishes. Marine Ecology Progress Series, 717. pp. 143-156.

Chow, Cher F.Y., Bolton, Caitlin, Boutros, Nader, Brambilla, Viviana, Fontoura, Luisa, Hoey, Andrew S., Madin, Joshua S., Pizarro, Oscar, Torres-Pulliza, Damaris, Woods, Rachael M., Zawada, Kyle J.A., Barbosa, Miguel, and Dornelas, Maria (2023) Coral settlement and recruitment are negatively related to reef fish trait diversity. Coral Reefs, 42. pp. 519-533.

Clark, Bethany L., Carneiro, Ana P.B., Pearmain, Elizabeth J., Rouyer, Marie-Morgane, Clay, Thomas A., Cowger, Win, Phillips, Richard A., Manica, Andrea, Hazin, Carolina, Eriksen, Marcus, González-Solís, Jacob, Adams, Josh, Albores-Barajas, Yuri V., Alfaro-Shigueto, Joanna, Alho, Maria Saldanha, Araujo, Deusa Teixeira, Arcos, José Manuel, Arnould, John P.Y., Barbosa, Nadito J.P., Barbraud, Christophe, Beard, Annalea M., Beck, Jessie, Bell, Elizabeth A., Bennet, Della G., Berlincourt, Maud, Biscoito, Manuel, Bjørnstad, Oskar K., Bolton, Mark, Booth Jones, Katherine A., Borg, John J., Bourgeois, Karen, Bretagnolle, Vincent, Bried, Joël, Briskie, James V., Brooke, M. de L., Brownlie, Katherine C., Bugoni, Leandro, Calabrese, Licia, Campioni, Letizia, Carey, Mark J., Carle, Ryan D., Carlile, Nicholas, Carreiro, Ana R., Catry, Paulo, Catry, Teresa, Cecere, Jacopo G., Ceia, Filipe R., Cherel, Yves, Choi, Chang-Yong, Cianchetti-Benedetti, Marco, Clarke, Rohan H., Cleeland, Jaimie B., Colodro, Valentina, Congdon, Bradley C., Danielsen, Jóhannis, De Pascalis, Federico, Deakin, Zoe, Dehnhard, Nina, Dell’Omo, Giacomo, Delord, Karine, Descamps, Sébastien, Dilley, Ben J., Dinis, Herculano A., Dubos, Jerome, Dunphy, Brendon J., Emmerson, Louise M., Fagundes, Ana Isabel, Fayet, Annette L., Felis, Jonathan J., Fischer, Johannes H., Freeman, Amanda N. D., Fromant, Aymeric, Gaibani, Giorgia, García, David, Gjerdrum, Carina, Gomes, Ivandra Soeli Gonçalves Correia, Forero, Manuela G., Granadeiro, José P., Grecian, W. James, Grémillet, David, Guilford, Tim, Hallgrimsson, Gunnar Thor, Halpin, Luke R., Hansen, Erpur Snær, Hedd, April, Helberg, Morten, Helgason, Halfdan H., Henry, Leeann M., Hereward, Hannah F. R., Hernandez-Montero, Marcos, Hindell, Mark A., Hodum, Peter J., Imperio, Simona, Jaeger, Audrey, Jessopp, Mark, Jodice, Patrick G. R., Jones, Carl G., Jones, Christopher W., Jónsson, Jón Einar, Kane, Adam, Kapelj, Sven, Kim, Yuna, Kirk, Holly, Kolbeinsson, Yann, Kraemer, Philipp L., Krüger, Lucas, Lago, Paulo, Landers, Todd J., Lavers, Jennifer L., Le Corre, Matthieu, Leal, Andreia, Louzao, Maite, Madeiros, Jeremy, Magalhães, Maria, Mallory, Mark L., Masello, Juan F., Massa, Bruno, Matsumoto, Sakiko, McDuie, Fiona, McFarlane Tranquilla, Laura, Medrano, Fernando, Metzger, Benjamin J., Militão, Teresa, Montevecchi, William A., Montone, Rosalinda C., Navarro-Herrero, Leia, Neves, Verónica C., Nicholls, David G., Nicoll, Malcolm A. C., Norris, Ken, Oppel, Steffen, Oro, Daniel, Owen, Ellie, Padget, Oliver, Paiva, Vítor H., Pala, David, Pereira, Jorge M., Péron, Clara, Petry, Maria V., de Pina, Admilton, Pina, Ariete T. Moreira, Pinet, Patrick, Pistorius, Pierre A., Pollet, Ingrid L., Porter, Benjamin J., Poupart, Timothée A., Powell, Christopher D. L., Proaño, Carolina B., Pujol-Casado, Júlia, Quillfeldt, Petra, Quinn, John L., Raine, Andre F., Raine, Helen, Ramírez, Iván, Ramos, Jaime A., Ramos, Raül, Ravache, Andreas, Rayner, Matt J., Reid, Timothy A., Robertson, Gregory J., Rocamora, Gerard J., Rollinson, Dominic P., Ronconi, Robert A., Rotger, Andreu, Rubolini, Diego, Ruhomaun, Kevin, Ruiz, Asunción, Russell, James C., Ryan, Peter G., Saldanha, Sarah, Sanz-Aguilar, Ana, Sardà-Serra, Mariona, Satgé, Yvan G., Sato, Katsufumi, Schäfer, Wiebke C., Schoombie, Stefan, Shaffer, Scott A., Shah, Nirmal, Shoji, Akiko, Shutler, Dave, Sigurðsson, Ingvar A., Silva, Mónica C., Small, Alison E., Soldatini, Cecilia, Strøm, Hallvard, Surman, Christopher A., Takahashi, Akinori, Tatayah, Vikash R. V., Taylor, Graeme A., Thomas, Robert J., Thompson, David R., Thompson, Paul M., Thórarinsson, Thorkell L., Vicente-Sastre, Diego, Vidal, Eric, Wakefield, Ewan D., Waugh, Susan M., Weimerskirch, Henri, Wittmer, Heiko U., Yamamoto, Takashi, Yoda, Ken, Zavalaga, Carlos B., Zino, Francis J., and Dias, Maria P. (2023) Global assessment of marine plastic exposure risk for oceanic birds. Nature Communications, 14. 3665.

Chandler, Josie F., Burn, Deborah, Caballes, Ciemon F., Doll, Peter C., Kwong, Sarah L.T., Lang, Bethan J., Pacey, Kai I., and Pratchett, Morgan S. (2023) Increasing densities of Pacific crown-of-thorns starfish (Acanthaster cf. solaris) at Lizard Island, northern Great Barrier Reef, resolved using a novel survey method. Scientific Reports, 13 (1). 19306.

Costa, Vincenzo A., Bellwood, David R., Mifsud, Jonathon C.O., Van Brussel, Kate, Geoghegan, Jemma L., Holmes, Edward C., and Harvey, Erin (2023) Limited cross-species virus transmission in a spatially restricted coral reef fish community. Virus Evolution, 9 (1). vead011.

Cardozo-Ferreira, G.C., Ferreira, C.E.I., Choat, J.H., Mendes, T.C., Macieira, R.M., Rezende, C.E., Joyeux, J.C., and Clements, K.D. (2023) Seasonal variation in diet and isotopic niche of nominally herbivorous fishes in subtropical rocky reefs. Marine Ecology Progress Series, 722. pp. 125-143.

Clark-Shen, Naomi, Chin, Andrew, Arunrugstichai, Sirachai, Labaja, Jessica, Mizrahi, Meira, Simeon, Benaya, and Hutchinson, Neil (2023) Status of Southeast Asia's marine sharks and rays. Conservation Biology, 37 (1). e13962.

Cameron, Kerry, Chartrand, Katie, Cameron, Grant, Miller, Ross, Shepherd, Lloyd, Concannon, Tess, and Singleton, Tarquin (2023) Stay or spray? Evaluating larval delivery strategies in a multi-partner coral reef restoration project across Gunggandji and Yirrganydji Sea Country. In: [Presented at the Australian Marine Sciences Association Conference 2023]. From: Australian Marine Sciences Association Conference 2023: Science in Sea Country, 2-7 July 2023, Gold Coast, QLD, Australia.

Cadier, Charles, Waltham, Nathan J., Canning, Adam, Fry, Scott, and Adame, Maria (2023) Tidal restoration to reduce greenhouse gas emissions from freshwater impounded coastal wetlands. Restoration Ecology, 31 (8). e13829.

Carter, A., Allan, S., Scott, A., Rasheed, M.A., and Torres Strait Regional Authority Land and Sea Rangers (2023) Torres Strait Seagrass Report Card 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Cybulski, Jonathan, Doherty, John M., LaRoche, Carly, Gutkowski, Kelly Donovan, Luo, Zizhan, Malloy, Elizabeth J., MacMillan, Laurel, Raymundo, Laurie, and Kim, Kiho (2023) Using coral holes to explore the historical ecology of Guam's coral reefs. Coral Reefs, 42. pp. 1411-1417.

Cane, Jasmine S. (2023) The effect of cross-generational plasticity on the development of coral reef fish under multiple environmental stressors. Masters (Research) thesis, James Cook University.

Cleguer, C., and Marsh, H. (2023) An inventory of dugong aerial surveys in Australia. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Campbell, Matthew John (2022) Assessing ecological risk posed to common rays by prawn trawling. PhD thesis, James Cook University.

Clark, Timothy D., Scheuffele, Hanna, Pratchett, Morgan S., and Skeeles, Michael R. (2022) Behavioural temperature regulation is a low priority in a coral reef fish (Plectropomus leopardus): insights from a novel behavioural thermoregulation system. Journal of Experimental Biology, 225 (18). jeb244212.

Castle, Alicia, and Waltham, Nathan (2022) Clearance rates achieved by an intertidal oyster, Isognomon ephippium, under different tidal emersion and temperature conditions. Estuarine, Coastal and Shelf Science, 276. 108018.

Chin, Andrew, Molloy, Fergus John, Cameron, Darren, Day, Jon C., Cramp, Jessica, Gerhardt, Karin Leeann, Heupel, Michelle R., Read, Mark, and Simpfendorfer, Colin A. (2022) Conceptual frameworks and key questions for assessing the contribution of marine protected areas to shark and ray conservation. Conservation Biology, 37 (1). e13917.

Chiaravalloti, Rafael Morais, Bolzan, Fábio, de Oliveira Roque, Fabio, and Biswas, Sumalika (2022) Ecosystem services in the floodplains: Socio-cultural services associated with ecosystem unpredictability in the Pantanal wetland, Brazil. Aquatic Ecosystem Health and Management, 25 (1). pp. 72-80.

Craigie, Ian D., and Pressey, Robert L. (2022) Fine-grained data and models of protected-area management costs reveal cryptic effects of budget shortfalls. Biological Conservation, 272. 109589.

Cook, P.A., Warnock, B., Gillies, C.L., and Hams, A.B. (2022) Historical abundance and distribution of the native flat oyster (Ostrea angasi) in estuaries of the Great Southern region of Western Australia help to prioritise potential sites for contemporary oyster reef restoration. Marine and Freshwater Research, 73 (1). pp. 48-56.

Claassens, L., de Villiers, N.M., and Waltham, N.J. (2022) How developed is the South African coast? Baseline extent of South Africa’s coastal and estuarine infrastructure. Ocean and Coastal Management, 222. 106112.

Cinner, Joshua E., Zamborain-Mason, Jessica, Maire, Eva, Hoey, Andrew S., Graham, Nicholas A.J., Mouillot, David, Villeger, Sebastien, Ferse, Sebastian, and Lockie, Stewart (2022) Linking key human-environment theories to inform the sustainability of coral reefs. Current Biology, 32 (12). 2610-2620.e4.

Cooper, Madalyn K., Villacorta-Rath, Cecilia, Burrows, Damien, Jerry, Dean R., Carr, Leah, Barnett, Adam, Huveneers, Charlie, and Simpfendorfer, Colin A. (2022) Practical eDNA sampling methods inferred from particle size distribution and comparison of capture techniques for a Critically Endangered elasmobranch. Environmental DNA, 4 (5). pp. 1011-1023.

Caballes, Ciemon F., Messmer, Vanessa, Raymundo, Maia L., and Pratchett, Morgan S. (2022) Prevalence and severity of sublethal injuries in crown-of-thorns starfish relative to marine reserves in the Great Barrier Reef. Aquatic Conservation: marine and freshwater ecosystems, 32 (6). pp. 993-1004.

Chartrand, K.M., Carter, A.B., Hoffmann, L., and Smith, T. (2022) Progress Report: MARRS Monitoring Trial at Moore Reef – June 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Cooper, Madalyn K. (2022) Resolving the global distribution of sawfishes (family Pristidae) using environmental DNA. PhD thesis, James Cook University.

Coppock, Amy G., Kingsford, Michael J., Battershill, Christopher N., and Jones, Geoffrey P. (2022) Significance of fish–sponge interactions in coral reef ecosystems. Coral Reefs, 41. pp. 1285-1308.

Crook, Kevin, Sheaves, Marcus, and Barnett, Adam (2022) Species-specific foraging behaviors define the functional roles of sympatric stingrays. Limnology and Oceanography, 67 (1). pp. 219-230.

Choy, Christina Pei Pei, Jabado, Rima W., Clark-Shen, Naomi, Huang, Danwei, Choo, Min Yi, and Rao, Madhu (2022) Unraveling the trade in wedgefishes and giant guitarfishes in Singapore. Marine Policy, 136. 104914.

Crisp, Samantha K., Tebbett, Sterling B., and Bellwood, David R. (2022) A critical evaluation of benthic phase shift studies on coral reefs. Marine Environmental Research, 178. 105667.

Cooke, Steven J., Bergman, Jordanna N., Twardek, William M., Piczak, Morgan L., Casselberry, Grace A., Lutek, Keegan, Dahlmo, Lotte S., Birnie-Gauvin, Kim, Griffin, Lucas P., Brownscombe, Jacob W., Raby, Graham D., Standen, Emily M., Horodysky, Andrij Z., Johnsen, Sönke, Danylchuk, Andy J., Furey, Nathan B., Gallagher, Austin J., Lédée, Elodie J., Midwood, Jon D., Gutowsky, Lee F.G., Jacoby, David M.P., Matley, Jordan K., and Lennox, Robert J. (2022) The movement ecology of fishes. Journal of Fish Biology, 101 (4). pp. 756-779.

Comeau, Steeve, Cornwall, Christopher E., Shlesinger, Tom, Hoogenboom, Mia, Mana, Ralph, McCulloch, Malcolm T., and Rodolfo-metalpa, Riccardo (2022) pH variability at volcanic CO2 seeps regulates coral calcifying fluid chemistry. Global Change Biology, 28 (8). pp. 2751-2763.

Campbell, Matthew J., and Rigby, Cassandra L. (2022) A re-examination of the growth of the gummy shark (Mustelus antarcticus) from Queensland, Australia. Marine and Freshwater Research, 73 (11). pp. 1399-1403.

Collins, William P., Bellwood, David R., and Morais, Renato A. (2022) The role of nocturnal fishes on coral reefs: A quantitative functional evaluation. Ecology and Evolution, 12 (8). e9249.

Cheal, Alistair J., Emslie, Michael J., Currey-Randall, Leanne M., and Heupel, Michelle R. (2021) Comparability and complementarity of reef fish measures from underwater visual census (UVC) and baited remote underwater video stations (BRUVS). Journal of Environmental Management, 289. 112375.

Cure, Katherine, Currey-Randall, Leanne, Galaiduk, Ronen, Radford, Ben, Wakeford, Mary, and Heyward, Andrew (2021) Depth gradients in abundance and functional roles suggest limited depth refuges for herbivorous fishes. Coral Reefs, 40 (2). pp. 365-379.

Campbell, Matthew J., McLennan, Mark F., Courtney, Anthony J., and Simpfendorfer, Colin A. (2021) Life-history characteristics of the eastern shovelnose ray, Aptychotrema rostrata (Shaw, 1794), from southern Queensland, Australia. Marine and Freshwater Research, 72 (9). pp. 1280-1289.

Campanyà-Llovet, Neus, Le Guitton, Marie, and Watson, Sue-Ann (2021) Long-term and seasonal changes in the life-history biology of the abyssal holothurian Pseudostichopus aemulatus from the Porcupine Abyssal Plain (North-East Atlantic). Deep-sea Research Part I: Oceanographic Research Papers, 174. 103537.

Currey-Randall, Leanne M., Galaiduk, Ronen, Stowar, Marcus, Vaughan, Brigit I., and Miller, Karen J. (2021) Mesophotic fish communities of the ancient coastline in Western Australia. PLoS ONE, 16 (4). e0250427.

Chartrand, K.N., Hoffmann, L.R., Ayling, A., and Ayling, T. (2021) Port of Abbot Point Ambient Coral Monitoring Surveys: 2020-2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Chartrand, K.M., Hoffmann, L.R., Ayling, A., and Ayling, T. (2021) Ports of Mackay and Hay Point Ambient Coral Monitoring Surveys: 2020-2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Castro-Sanguino, Carolina, Ortiz, Juan Carlos, Thompson, Angus, Wolff, Nicholas H., Ferrari, Renata, Robson, Barbara, Magno-Canto, Marites M., Puotinen, Marji, Fabricius, Katharina E., and Uthicke, Sven (2021) Reef state and performance as indicators of cumulative impacts on coral reefs. Ecological Indicators, 123. 107335.

Chow, Cher F.Y., Wassénius, Emmy, Dornelas, Maria, and Hoey, Andrew S. (2021) Species differences drive spatial scaling of foraging patterns in herbivorous reef fishes. Oikos, 130 (12). pp. 2217-2230.

Caballes, Ciemon Frank, Byrne, Maria, Messmer, Vanessa, and Pratchett, Morgan S. (2021) Temporal variability in gametogenesis and spawning patterns of crown-of-thorns starfish within the outbreak initiation zone in the northern Great Barrier Reef. Marine Biology, 168 (1). 13.

Carter, Alex B., Collier, Catherine, Lawrence, Emma, Rasheed, Michael A., Robson, Barbara J., and Coles, Rob (2021) A spatial analysis of seagrass habitat and community diversity in the Great Barrier Reef World Heritage Area. Scientific Reports, 11. 22344.

Crook, Kevin Alexander (2020) Assessing the functional roles of rays in coastal sandflats. PhD thesis, James Cook University.

Chase, T. J., Pratchett, M. S., and Hoogenboom, M. O. (2020) Behavioral trade-offs and habitat associations of coral-dwelling damselfishes (family Pomacentridae). Marine Ecology Progress Series, 633. pp. 141-156.

Cowan, Zara-Louise, Ling, Scott D., Caballes, Ciemon F., Dworjanyn, Symon A., and Pratchett, Morgan S. (2020) Crown-of-thorns starfish larvae are vulnerable to predation even in the presence of alternative prey. Coral Reefs, 39. pp. 293-303.

Chase, T. J., Pratchett, M. S., McWilliam, M. J., Hein, M. Y., Tebbett, S. B., and Hoogenboom, M. O. (2020) Damselfishes alleviate the impacts of sediments on host corals. Royal Society Open Science, 7. 192074.

Coppock, Amy G., González-Murcia, Saúl O., Srinivasan, Maya, Gardiner, Naomi M., and Jones, Geoffrey P. (2020) Different responses of coral and rubble-dwelling coral reef damselfishes (Family: Pomacentridae) to chemosensory cues from coral reef microhabitats. Marine Biology, 167. 74.

Cleguer, Christophe, Garrigue, Claire, and Marsh, Helene (2020) Dugong (Dugong dugon) movements and habitat use in a coral reef lagoonal ecosystem. Endangered Species Research, 43 (3). pp. 167-181.

Campbell, Matthew J., Tonks, Mark L., Miller, Margaret, Brewer, David T., Courtney, Anthony J., and Simpfendorfer, Colin A. (2020) Factors affecting elasmobranch escape from turtle excluder devices (TEDs) in a tropical penaeid-trawl fishery. Fisheries Research, 224. 105456.

Chakravarti, Leela J., Buerger, Patrick, Levin, Rachel A., and van Oppen, Madeleine J.H. (2020) Gene regulation underpinning increased thermal tolerance in a laboratory-evolved coral photosymbiont. Molecular Ecology, 29 (9). pp. 1684-1703.

Chartrand, K.M., Fletcher-Leonhardt, J.D., and Rasheed, M.A. (2020) Green Island Jetty Repairs Coral Monitoring Report – December 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Corlett, Richard T., Primack, Richard B., Devictor, Vincent, Maas, Bea, Goswami, Varun R., Bates, Amanda E., Koh, Lian Pin, Regan, Tracey J., Loyola, Rafael, Pakeman, Robin J., Cumming, Graeme S., Pidgeon, Anna, Johns, David, and Roth, Robin (2020) Impacts of the coronavirus pandemic on biodiversity conservation. Biological Conservation, 246. 108571.

Cruz-Motta, Juan J., Miloslavich, Patricia, Guerra-Castro, Edlin, Hernandez-Agreda, Alejandra, Herrera, Cesar, Barros, Francisco, Navarrete, Sergio A., Sepúlveda, Roger D., Glasby, Tim M., Bigatti, Gregorio, Cardenas-Calle, Maritza, Carneiro, Pedro B.M., Carranza, Alvar, Flores, Augusto A.V., Gil-Kodaka, Patricia, Gobin, Judith, Gutiérrez, Jorge L., Klein, Eduardo, Krull, Marcos, Lazarus, Juan F., Londoño-Cruz, Edgardo, Lotufo, Tito, Macaya, Erasmo C., Mora, Camilo, Mora, Elba, Palomo, Gabriela, Parragué, Mirtala, Pellizzari, Franciane, Retamales, Roberto, Rocha, Rosana M., and Romero, Leonardo (2020) Latitudinal patterns of species diversity on South American rocky shores: local processes lead to contrasting trends in regional and local species diversity. Journal of Biogeography, 47 (9). pp. 1966-1979.

Currey-Randall, Leanne M., Cappo, Mike, Simpfendorfer, Colin A., Farabaugh, Naomi F., and Heupel, Michelle R. (2020) Optimal soak times for Baited Remote Underwater Video Station surveys of reef-associated elasmobranchs. PLoS One, 15 (5). e0231688.

Cumming, Graeme, and Dobbs, Kirstin A. (2020) Quantifying social-ecological scale mismatches suggests people should be managed at broader scales than ecosystems. One Earth, 3 (2). pp. 251-259.

Crawford, C., Edgar, G., Gillies, C. L., and Heller-Wagner, G. (2020) Relationship of biological communities to habitat structure on the largest remnant flat oyster reef (Ostrea angasi) in Australia. Marine and Freshwater Research, 71 (8). pp. 972-983.

Cowman, Peter F., Quattrini, Andrea M., Bridge, Tom C.L., Watkins-Colwell, Gregory J., Fadli, Nur, Grinblat, Mila, Roberts, T. Edward, McFadden, Catherine S., Miller, David J., and Baird, Andrew H. (2020) An enhanced target-enrichment bait set for Hexacorallia provides phylogenomic resolution of the staghorn corals (Acroporidae) and close relatives. Molecular Phylogenetics and Evolution, 153. 106944.

Comeros-Raynal, Mia T., Lawrence, Alice, Sudek, Mareike, Vaeoso, Motusaga, McGuire, Kim, Regis, Josephine, and Houk, Peter (2019) Applying a ridge-to-reef framework to support watershed, water quality, and community-based fisheries management in American Samoa. Coral Reefs, 38 (3). pp. 505-520.

Chivers, D.P., McCormick, M.I., Fakan, E.P., Barry, R.P., Edmiston, J.W., and Ferrari, M.C.O. (2019) Coral degradation alters predator odour signatures and influences prey learning and survival. Proceedings of the Royal Society of London Series B, Biological Sciences, 286 (1903). 20190562.

Chase, Tory J., and Hoogenboom, Mia O. (2019) Differential occupation of available coral hosts by coral-dwelling damselfish (Pomacentridae) on Australia's Great Barrier Reef. Diversity, 11 (11). 219.

Ceccarelli, Daniela M., Evans, Richard D., Logan, Murray, Mantel, Philippa, Puotinen, Marji, Petus, Caroline, Russ, Garry R., and Williamson, David H. (2019) Long-term dynamics and drivers of coral and macroalgal cover on inshore reefs of the Great Barrier Reef Marine Park. Ecological Applications. e02008.

Carpentier, Alice S., Berthe, Cécile, Ender, Isabel, Jaine, Fabrice R.A., Mourier, Johann, Stevens, Guy, De Rosemont, Moeava, and Clua, Eric (2019) Preliminary insights into the population characteristics and distribution of reef (Mobula alfredi) and oceanic (M. birostris) manta rays in French Polynesia. Coral Reefs, 38. pp. 1197-1210.

Chakravarti, Leela J., Negri, Andrew P., and van Oppen, Madeleine J.H. (2019) Thermal and herbicide tolerances of chromerid algae and their ability to form a symbiosis with corals. Frontiers In Microbiology, 10. 173.

Cooper, Amanda M., MacDonald, Chancey, Roberts, T. Edward, and Bridge, Tom C.L. (2019) Variability in the functional composition of coral reef fish communities on submerged and emergent reefs in the central Great Barrier Reef, Australia. PLoS ONE, 14 (5). e0216785.

Choi, Chi-Yeung, Peng, He-Bo, He, Peng, Ren, Xiao-Tong, Zhang, Shen, Jackson, Micha V., Gan, Xiaojing, Chen, Ying, Jia, Yifei, Christie, Maureen, Flaherty, Tony, Leung, Kar-Sin Katherine, Yu, Chenxing, Murray, Nicholas J., Piersma, Theunis, Fuller, Richard A., and Ma, Zhijun (2019) Where to draw the line? Using movement data to inform protected area design and conserve mobile species. Biological Conservation, 234. pp. 64-71.

Crandall, Eric D., Riginos, Cynthia, Bird, Chris E., Liggins, Libby, Treml, Eric, Beger, Maria, Barber, Paul H., Connolly, Sean R., Cowman, Peter F., Dibattista, Joseph D., Eble, Jeff A., Magnuson, Sharon F., Horne, John B., Kochzius, M, Lessios, Harilaos A., Liu, Shang Yin Vanson, Ludt, William B., Madduppa, Hawis, Pandolfi, John M., Toonen, Robert J., Diversity of the Indo‐Pacific Network, and Gaither, Michelle R. (2019) The molecular biogeography of the Indo-Pacific: testing hypotheses with multispecies genetic patterns. Global Ecology and Biogeography, 28 (7). pp. 943-960.

Cinner, Joshua E., Maire, Eva, Huchery, Cindy, MacNeil, M. Aaron, Graham, Nicholas A.J., Mora, Camilo, McClanahan, Tim R., Barnes, Michele, Kittinger, John N., Hicks, Christina C., D'Agata, Stephanie, Hoey, Andrew S., Gurney, Georgina G., Feary, David A., Williams, Ivor D., Kulbicki, Michel, Vigliola, Laurent, Wantiez, Laurent, Edgar, Graham J., Stuart-Smith, Rick D., Sandin, Stuart A., Green, Alison, Hardt, Marah J., Beger, Maria, Friedlander, Alan M., Wilson, Shaun, Brokovich, Eran, Brooks, Andrew J., Cruz-Motta, Juan J., Booth, David J., Chabanet, Pascal, Gough, Charlotte, Tupper, Mark, Ferse, Sebastian C.A., Sumaila, U. Rashid, Pardede, Shinta, and Mouillot, David (2018) Gravity of human impacts mediates coral reef conservation gains. Proceedings of the National Academy of Sciences of the United States of America, 115 (27). E6116-E6125.

Chin, Andrew, and Pecl, Gretta (2018) Citizen science in shark and ray research and conservation: strengths, opportunities, considerations and pitfalls. In: Carrier, Jeffrey C., Heithaus, Michael R., and Simpfendorfer, Colin A., (eds.) Shark Research: emerging technologies and applications for the field and laboratory. Marine Biology Series . CRC Press, Boca Raton, FL, USA, pp. 299-317.

Chase, T.J., Pratchett, M.S., Frank, G.E., and Hoogenboom, M.O. (2018) Coral-dwelling fish moderate bleaching susceptibility of coral hosts. PLoS One, 13 (12). e0208545.

Chakravarti, Leela J., and van Oppen, Madeleine J.H. (2018) Experimental evolution in coral photosymbionts as a tool to increase thermal tolerance. Frontiers in Marine Science, 5. 227.

Connolly, Rod M., Smith, Timothy M., Maxwell, Paul S., Olds, Andrew D., Macreadie, Peter I., and Sherman, Craig D.H. (2018) Highly disturbed populations of seagrass show increased resilience but lower genotypic diversity. Frontiers in Plant Science, 9. 894.

Chausson, Juliette, Srinivasan, Maya, and Jones, Geoffrey P. (2018) Host anemone size as a determinant of social group size and structure in the orange clownfish (Amphiprion percula). PeerJ, 6. e5841.

Chartrand, Kathryn M., Szabó, Milán, Sinutok, Sutinee, Rasheed, Michael A., and Ralph, Peter J. (2018) Living at the margins - the response of deep-water seagrasses to light and temperature renders them susceptible to acute impacts. Marine Environmental Research, 136. 126 - 138.

Campbell, Matthew J., McLennan, Mark F., Courtney, Anthony J., and Simpfendorfer, Colin A. (2018) Post-release survival of two elasmobranchs, the eastern shovelnose ray (Aptychotrema rostrata) and the common stingaree (Trygonoptera testacea), discarded from a prawn trawl fishery in southern Queensland, Australia. Marine and Freshwater Research, 69 (4). pp. 551-561.

Chen, Tianran, Roff, George, McCook, Laurence, Zhao, Jianxin, and Li, Shu (2018) Recolonization of marginal coral reef flats in response to recent sea-level rise. Journal of Geophysical Research: Oceans, 123 (10). pp. 7618-7628.

Clements, Cody S., Rasher, Douglas B., Hoey, Andrew S., Bonito, Victor E., and Hay, Mark E. (2018) Spatial and temporal limits of coral-macroalgal competition: the negative impacts of macroalgal density, proximity, and history of contact. Marine Ecology - Progress Series, 586. pp. 11-20.

Cumbo, Vivian R., van Oppen, Madeleine J.H., and Baird, Andrew H. (2018) Temperature and symbiodinium physiology affect the establishment and development of symbiosis in corals. Marine Ecology - Progress Series, 587. pp. 117-127.

Cipresso Pereira, Pedro Henrique (2017) Benthic composition influences habitat use and toxicity of coral-dwelling fishes. Marine Biology, 164 (9). 189.

Carter, A.B., Davies, C.R., Emslie, M.J., Mapstone, B.D., Russ, G.R., Tobin, A.J., and Williams, A.J. (2017) Reproductive benefits of no-take marine reserves vary with region for an exploited coral reef fish. Scientific Reports, 7. 9693. pp. 1-12.

Coker, D.J., Nowicki, J.P., and Graham, N.A.J. (2017) Influence of coral cover and structural complexity on the accuracy of visual surveys of coral-reef fish communities. Journal of Fish Biology, 90 (6). pp. 2425-2433.

Cowan, Zara-Louise, Ling, Scott D., Dworjanyn, Symon A., Caballes, Ciemon F., and Pratchett, Morgan S. (2017) Interspecific variation in potential importance of planktivorous damselfishes as predators of Acanthaster sp. eggs. Coral Reefs, 36 (2). pp. 653-661.

Caballes, Ciemon Frank, and Pratchett, Morgan S. (2017) Environmental and biological cues for spawning in the crown-of-thorns starfish. PLoS ONE, 12 (3). e0173964.

Cumming, Erin, Jarvis, Jessie C., Sherman, Craig, York, Paul H., and Smith, Timothy M. (2017) Seed germination in a southern Australian temperate seagrass. PeerJ, 5. e3114. pp. 1-19.

Clark, Timothy D., Messmer, Vanessa, Tobin, Andrew J., Hoey, Andrew S., and Pratchett, Morgan S. (2017) Rising temperatures may drive fishing-induced selection of low-performance phenotypes. Scientific Reports, 7. 40571.

Cipresso Pereira, Pedro Henrique, Bezerra dos Santos, Marcus Vinicius, Lippi, Daniel Lino, de Paula Silva, Pedro Henrique, and Barros, Breno (2017) Difference in the trophic structure of fish communities between artificial and natural habitats in a tropical estuary. Marine and Freshwater Research, 68 (3). pp. 473-483.

Caballes, Ciemon Frank, Pratchett, Morgan S., Raymundo, Maia L., and Rivera-Posada, Jairo A. (2017) Environmental tipping points for sperm motility, fertilization, and embryonic development in the crown-of-thorns starfish. Diversity, 9 (1). 10. pp. 1-18.

Caballes, Ciemon, Pratchett, Morgan, and Buck, Alexander C.E. (2017) Interactive effects of endogenous and exogenous nutrition on larval development for crown-cf-thorns starfish. Diversity, 9 (1). 15.

Cowan, Zara-Louise, Pratchett, Morgan, Messmer, Vanessa, and Ling, Scott (2017) Known predators of crown-of-thorns starfish (Acanthaster spp.) and their role in mitigating, if not preventing, population outbreaks. Diversity, 9 (1). 7. pp. 1-19.

Castrol, Joana M., Amorim, M. Clara P., Oliveira, Ana P., Goncalves, Emmanuel J., Munday, Philip L., Simpson, Stephen D., and Faria, Ana M. (2017) Painted goby larvae under high-CO2 fail to recognize reef sounds. PLoS One, 12 (1). e0170838. pp. 1-16.

Casey, Jordan M., Baird, Andrew H., Brandl, Simon J., Hoogenboom, Mia O., Rizzari, Justin R., Frisch, Ashley J., Mirbach, Christopher E., and Connolly, Sean R. (2017) A test of trophic cascade theory: fish and benthic assembalges across a predator density gradient on coral reefs. Oecologia, 183 (1). pp. 161-175.

Connolly, Sean R., Hughes, Terry P., and Bellwood, David R. (2017) A unified model explains commonness and rarity on coral reefs. Ecology Letters, 20 (4). pp. 477-486.

Cowan, Zara-Louise, Dworjanyn, Symon A., Caballes, Ciemon, and Pratchett, Morgan (2016) Predation on crown-of-thorns starfish larvae by damselfishes. Coral Reefs, 35 (4). pp. 1253-1262.

Courtney, Robert, Browning, Sally, Northfield, Tobin, and Seymour, Jamie (2016) Thermal and osmotic tolerance of 'Irukandji' polyps: Cubozoa; Carukia barnesi. PLoS ONE, 11 (7). e0159380. pp. 1-14.

Coppock, Amy G., Gardiner, Naomi M., and Jones, Geoffrey P. (2016) Sniffing out the competition? Juvenile coral reef damselfishes use chemical cues to distinguish the presence of conspecific and heterospecific aggregations. Behavioural Processes, 125. pp. 43-50.

Chin, Andrew, Heupel, Michelle R., Simpfendorfer, Colin A., and Tobin, Andrew J. (2016) Population organisation in reef sharks: new variations in coastal habitat use by mobile marine predators. Marine Ecology Progress Series, 544. pp. 197-211.

Cowan, Zara-Louise, Dworjanyn, Symon A., Caballes, Ciemon F., and Pratchett, Morgan (2016) Benthic predators influence microhabitat preferences and settlement success of crown-of-thorns starfish (Acanthaster cf. solaris). Diversity, 8 (4). 27. pp. 1-11.

Cipresso Pereira, Pedro Henrique Cipresso, and Munday, Philip L. (2016) Coral colony size and structure as determinants of habitat use and fitness of coral-dwelling fishes. Marine Ecology Progress Series, 553. pp. 163-172.

Chartrand, Kathryn M., Bryant, Catherine V., Carter, Alexandra B., Ralph, Peter J., and Rasheed, Michael A. (2016) Light thresholds to prevent dredging impacts on the Great Barrier Reef seagrass, Zostera muelleri ssp. capricorni. Frontiers in Marine Science, 3. 106.

Cipresso Pereira, Pedro Henrique, Silva Leal, Isabela Carolina, and De Araújo, Maria (2016) Observer presence may alter the behaviour of reef fishes associated with coral colonies. Marine Ecology, 37 (4). pp. 760-769.

Coppock, Amy G., Gardiner, Naomi M., and Jones, Geoffrey P. (2016) Olfactory responses of coral-reef fishes to coral degradation and crown-of-thorns (Acanthaster planci). Marine and Freshwater Research, 67 (5). pp. 605-611.

Capper, Angela, Erickson, Amy, Ritson-Williams, Raphael, Becerro, Mikel A., Arthur, Karen A., and Paul, Valerie (2016) Palatability and chemical defenses of benthic cyanobacteria to a suite of herbivores. Journal of Experimental Marine Biology and Ecology, 474. pp. 100-108.

Ceccarelli, Daniela M., Emslie, Michael J., and Richards, Zoe T. (2016) Post-disturbance stability of fish assemblages measured at coarse taxonomic resolution masks change at finer scales. PLoS One, 11 (6). e0156232. pp. 1-22.

Chivers, Douglas P., McCormick, Mark I., Allan, Bridie J.M., and Ferrari, Maud C.O. (2016) Risk assessment and predator learning in a changing world: understanding the impacts of coral reef degradation. Scientific Reports, 6. 32542. pp. 1-7.

Carter, A.B., Coles, R.G., McKenna, S.A., and Rasheed, M.A. (2016) A spatial management tool for seagrasses in the Great Barrier Reef World Heritage Area. In: International Coral Reef Symposium: abstract book. 27805. p. 52. From: 13th International Coral Reef Symposium, 19-24 June 2016, Honolulu, HI, USA.

D

Duke, Norman, and Lee, Shing Yip (2024) 2.4. The diversity of mangroves. Towards an authoritative list of the world’s mangrove plants. Report Section. Global Mangrove Alliance.

Datta, Amber W., Wyborn, Carina, Chaffin, Brian C., and Barnes, Michele L. (2024) Imagining reef futures after mass coral bleaching events. Environmental Science & Policy, 151. 103625.

Duke, Norman C., Canning, Adam D., and Mackenzie, Jock R. (2024) More intense severe tropical cyclones in recent decades cause greater impacts on mangroves bordering Australia’s Great Barrier Reef. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, Florida, USA, pp. 226-253.

Diggins, Rebecca L., Grimm, Jessica, Mendez, Diana, Jones, Karina, Hamann, Mark, Bell, Ian, and Ariel, Ellen (2023) Confirmed feasibility of a satellite tracker attachment method on small juvenile hawksbill turtles Eretmochelys imbricata. Marine Ecology Progress Series, 704. pp. 119-130.

Douglas, Sophia R.L., Tebbett, Sterling B., Choukroun, Severine, Goatley, Christopher H.R., and Bellwood, David R. (2023) Depth stratified light trap sampling reveals variation in the depth distribution of late-stage cryptobenthic reef fish larvae. Coral Reefs, 42 (2). pp. 507-512.

Devloo-Delva, Floriaan, Burridge, Christopher P., Kyne, Peter M., Brunnschweiler, Juerg M., Chapman, Demian D., Charvet, Patricia, Chen, Xiao, Cliff, Geremy, Daly, Ryan, Drymon, J. Marcus, Espinoza, Mario, Fernando, Daniel, Barcia, Laura Garcia, Glaus, Kerstin, González-Garza, Blanca I., Grant, Michael I., Gunasekera, Rasanthi M., Hernandez, Sebastian, Hyodo, Susumu, Jabado, Rima W., Jaquemet, Sébastien, Johnson, Grant, Ketchum, James T., Magalon, Hélène, Marthick, James R., Mollen, Frederik H., Mona, Stefano, Naylor, Gavin J.P., Nevill, John E.G., Phillips, Nicole M., Pillans, Richard D., Postaire, Bautisse D., Smoothey, Amy F., Tachihara, Katsunori, Tillet, Bree J., Valerio-Vargas, Jorge A., and Feutry, Pierre (2023) From rivers to ocean basins: The role of ocean barriers and philopatry in the genetic structuring of a cosmopolitan coastal predator. Ecology and Evolution, 13 (2). e9837.

Doll, Peter C., Uthicke, Sven, Caballes, Ciemon F., Patel, Frances, Gomez Cabrera, Maria del C., Lang, Bethan J., and Pratchett, Morgan S. (2023) Induction of larval settlement in crown-of-thorns starfish is not mediated by conspecific cues. Scientific Reports, 13. 17119.

Doll, Peter (2023) Microscopic starfish and how to find them: Developing a molecular-based approach to measure crown-of-thorns-starfish settlement rates. Reef in Review, 2023. pp. 48-49.

Duke, Norman C., Virly, Sabrina, and Tracey, Dieter (2023) New Caledonian mangroves: A treasure to protect. MangroveWatch Publications, Currumbin, Queensland, Australia.

Daly, Ryan, Venables, Stephanie K., Rogers, Toby D., Filmalter, John D., Hempson, Tessa N., Murray, Taryn S., Hussey, Nigel E., Silva Leal, Isabela, Pereira, Marcos A.M., Mann, Bruce Q., Nharreluga, Bilardo A.S., and Cowley, Paul D. (2023) Persistent transboundary movements of threatened sharks highlight the importance of cooperative management for effective conservation. Marine Ecology-Progress Series, 720. pp. 117-131.

Doll, Peter C. (2023) Processes and patterns in larval settlement of crown-of-thorns starfish (Acanthaster cf. solaris). PhD thesis, James Cook University.

Downie, Adam T., Lefevre, Sjannie, Illing, Björn, Harris, Jessica, Jarrold, Michael D., McCormick, Mark I., Nilsson, Göran E., and Rummer, Jodie L. (2023) Rapid physiological and transcriptomic changes associated with oxygen delivery in larval anemonefish suggest a role in adaptation to life on hypoxic coral reefs. PLoS Biology, 21 (5). e3002102.

Doll, Peter C., Uthicke, Sven, Caballes, Ciemon F., Diaz-Pulido, Guillermo, Abdul Wahab, Muhammad A., Jeong, So Young, Lang, Bethan J., and Pratchett, Morgan S. (2023) Settlement cue selectivity by larvae of the destructive crown-of-thorns starfish. Biology Letters, 19 (1). 20220399.

De Wysiecki, Agustín M., Barnett, Adam, Cortés, Federico, Wiff, Rodrigo, Merlo, Pablo J., Jaureguizar, Andrés J., Awruch, Cynthia A., Trobbiani, Gastón A., and Irigoyen, Alejo J. (2023) The essential habitat role of a unique coastal inlet for a widely distributed apex predator. Royal Society Open Science, 10 (10). 230667.

Duke, Norman (2022) Climate change killed 40 million Australian mangroves in 2015. Here’s why they’ll probably never grow back. The Conversation, 28 July 2022.

D'Alberto, Brooke Minetta (2022) Conservation biology of wedgefishes (Family Rhinidae) and giant guitarfishes (Family Glaucostegidae). PhD thesis, James Cook University.

Duke, Norman Clive, Mackenzie, Jock R., Canning, Adam, Hutley, Lindsay B., Bourke, Adam J., Kovacs, John, Cormier, Riley, Staben, Grant, Lymburner, Leo, and Ai, Emma (2022) ENSO-driven extreme oscillations in mean sea level destabilise critical shoreline mangroves—An emerging threat. PLOS Climate, 1 (8). e0000037.

Doll, Peter C., Caballes, Ciemon F., Hoey, Andrew S., Uthicke, Sven, Ling, Scott D., and Pratchett, Morgan S. (2022) Larval settlement in echinoderms: a review of processes and patterns. Oceanography and Marine Biology, 60. pp. 433-494.

De Wysiecki, Agustin M., Cortes, Federico, Jaureguizar, Andres J., and Barnett, Adam (2022) Potential global distribution of a temperate marine coastal predator: The role of barriers and dispersal corridors on subpopulation connectivity. Limnology and Oceanography, 67 (8). pp. 1805-1819.

Dietzel, Andreas, Bode, Michael, Connolly, Sean R., and Hughes, Terry P. (2022) Reply to: Conclusions of low extinction risk for most species of reef-building corals are premature. Nature Ecology & Evolution, 6 (4). pp. 359-360.

D'Alberto, Brooke M., White, William T., Chin, Andrew, Dharmadi, and Simpfendorfer, Colin A. (2022) Untangling the Indonesian tangle net fishery: Describing a data-poor fishery targeting large, threatened rays (Superorder Batoidea). Aquatic Conservation: marine and freshwater ecosystems, 32 (2). pp. 366-384.

Doll, Peter C., Messmer, Vanessa, Uthicke, Sven, Doyle, Jason R., Caballes, Ciemon F., and Pratchett, Morgan S. (2021) DNA-based detection and patterns of larval settlement of the corallivorous crown-of-thorns sea star (Acanthaster sp.). Biological Bulletin, 241 (3). pp. 271-285.

Daly, R., Le Noury, P., Hempson, T.N., Ziembicki, M., Olbers, J.M., Brokensha, G.M., and Mann, B.Q. (2021) Bull shark Carcharhinus leucas recruitment into the St Lucia Estuary, South Africa, after prolonged mouth closure, and the first observation of a neonate bull shark preyed on by a Nile crocodile Crocodylus niloticus. African Journal of Marine Science, 43 (3). pp. 417-421.

Driscoll, Don A., Garrard, Georgia E., Kusmanoff, Alexander M., Dovers, Stephen, Maron, Martine, Preece, Noel, Pressey, Robert L., and Ritchie, Euan G. (2021) Consequences of information suppression in ecological and conservation sciences. Conservation Letters, 14 (1). e12757.

Duarte de Paula Costa, Micheli, Lovelock, Catherine E., Waltham, Nathan J., Young, Mary, Adame, Maria F., Bryant, Catherine V., Butler, Don, Green, David, Rasheed, Michael A., Salinas, Cristian, Serrano, Oscar, York, Paul H., Whitt, Ashley A., and Macreadie, Peter I. (2021) Current and future carbon stocks in coastal wetlands within the Great Barrier Reef catchments. Global Change Biology, 27 (14). pp. 3257-3271.

Downie, Adam T., Phelps, Caroline M., Jones, Rhondda, Rummer, Jodie L., Chivers, Douglas P., Ferrari, Maud C.O., and McCormick, Mark I. (2021) Exposure to degraded coral habitat depresses oxygen uptake rate during exercise of a juvenile reef fish. Coral Reefs, 40 (4). pp. 1361-1367.

D’Agostino, Daniele, Burt, John A., Santinelli, Veronica, Vaughan, Grace O., Fowler, Ashley M., Reader, Tom, Taylor, Brett M., Hoey, Andrew, Cavalcante, Georgenes H., Bauman, Andrew G., and Feary, David A. (2021) Growth impacts in a changing ocean: insights from two coral reef fishes in an extreme environment. Coral Reefs, 40 (2). pp. 433-446.

Doll, Peter C., Munday, Philip L., Bonin, Mary C., and Jones, Geoffrey P. (2021) Habitat specialisation and overlap in coral reef gobies of the genus Eviota (Teleostei: Gobiidae). Marine Ecology-Progress Series, 677. pp. 81-94.

Duke, Norman C., Hutley, Lindsay B., Mackenzie, Jock R., and Burrows, Damien (2021) Processes and factors driving change in mangrove forests: an evaluation based on the mass dieback event in Australia’s Gulf of Carpentaria. In: Canadell, Josep G., and Jackson, Robert B., (eds.) Ecosystem Collapse and Climate Change. Ecological Studies, 241 . Springer International Publishing, Cham, Switzerland, pp. 221-264.

Drane, Kezia, Huerlimann, Roger, Power, Michelle, Whelan, Anna, Ariel, Ellen, Sheehan, Madoc, and Kinobe, Robert (2021) Testudines as sentinels for monitoring the dissemination of antibiotic resistance in marine environments: an integrative review. Antibiotics, 10 (7). 775.

Doo, Steve S., Leplastrier, Aero, Graba-Landry, Alexia, Harianto, Januar, Coleman, Ross A, and Byrne, Maria (2020) Amelioration of ocean acidification and warming effects through physiological buffering of a macroalgae. Ecology and Evolution, 10 (15). pp. 8465-8475.

de Keukelaere, Liesbeth, Sterckx, Sindy, Adriaensen, Stefan, Bhatia, Nitin, Monbaliu, Jaak, Toorman, Erik, Cattrijsse, André, Lebreton, Carole, Van der Zande, Dimitry, and Knaeps, Els (2020) Coastal turbidity derived from PROBA-V global vegetation satellite. Remote Sensing, 12 (3). 463.

Dwyer, Ross G., Krueck, Nils C., Udyawer, Vinay, Heupel, Michelle R., Chapman, Demian, Pratt, Harold L., Garla, Ricardo, and Simpfendorfer, Colin A. (2020) Individual and population benefits of marine reserves for reef sharks. Current Biology, 30 (3). e5. pp. 480-489.

Dahdouh-guebas, Farid, Ajonina, Gordon N., Amir, A. Aldrie, Andradi-brown, Dominic A., Aziz, Irfan, Balke, Thorsten, Barbier, Edward B., Cannicci, Stefano, Cragg, Simon M., Cunha-Lignon, Marília, Curnick, David J., Duarte, Carlos M., Duke, Norman C., Endsor, Charlie, Fratini, Sara, Feller, Ilka C., Fromard, François, Hugé, Jean, Huxham, Mark, Kairo, James G., Kajita, Tadashi, Kathiresan, Kandasamy, Koedam, Nico, Lee, Shing Yip, Lin, Hsing-Juh, Mackenzie, Jock R., Mangora, Mwita M., Marchand, Cyril, Meziane, Tarik, Minchinton, Todd E., Pettorelli, Nathalie, Polanía, Jaime, Polgar, Gianluca, Poti, Meenakshi, Primavera, Jurgenne, Quarto, Alfredo, Rog, Stefanie M., Satyanarayana, Behara, Schaeffer-Novelli, Yara, Spalding, Mark D., Van der Stocken, Tom, Wodehouse, Dominic, Yong, Jean W.H., Zimmer, Martin, and Friess, Daniel A. (2020) Public perceptions of mangrove forests matter for their conservation. Frontiers in Marine Science, 7. 603651.

Dunstan, Andrew, Robertson, Katharine, Fitzpatrick, Richard, Pickford, Jeffrey, and Meager, Justin (2020) Use of unmanned aerial vehicles (UAVs) for mark-resight nesting population estimation of adult female green sea turtles at Raine Island. PLoS ONE, 15 (6). e0228524.

dos Santos Ribas, Luiz Guilherme, Pressey, Robert L., Loyola, Rafael, and Bini, Luis Mauricio (2020) A global comparative analysis of impact evaluation methods in estimating the effectiveness of protected areas. Biological Conservation, 246. 108595.

Devloo-Delva, Floriaan, Maes, Gregory E., Hernández, Sebastián I., Mcallister, Jaime D., Gunasekera, Rasanthi M., Grewe, Peter M., Thomson, Robin B., and Feutry, Pierre (2019) Accounting for kin sampling reveals genetic connectivity in Tasmanian and New Zealand school sharks, Galeorhinus galeus. Ecology and Evolution, 9 (8). pp. 4465-4472.

Den Haring, Sander D., and Sutton, Stephen G. (2019) Comparing intended, self-reported, and observed behavior of snorkelers in the Mombasa Marine Park and Reserve, Kenya. Tourism in Marine Environments, 14 (1-2). pp. 1-17.

Donaldson, James A., Drews, Paulo, Bradley, Michael, Morgan, David L., Baker, Ronald, and Ebner, Brendan C. (2019) Countering low visibility in video survey of an estuarine fish assemblage. Pacific Conservation Biology, 26 (2). pp. 190-200.

Duong, B., Blomberg, S.P., Cribb, T.H., Cowman, P.F., Kuris, A.M., McCormick, M.I., Warner, R.R., Sun, D., and Grutter, A.S. (2019) Parasites of coral reef fish larvae: its role in the pelagic larval stage. Coral Reefs, 38 (2). pp. 199-214.

Dubuc, Alexia, Waltham, Nathan J., Baker, Ronald, Marchand, Cyril, and Sheaves, Marcus (2019) Patterns of fish utilisation in a tropical IndoPacific mangrove-coral seascape, New Caledonia. PLoS ONE, 14 (4). e0207168.

Doszpot, Neil E., McWilliam, Michael J., Pratchett, Morgan S., Hoey, Andrew S., and Figueira, Will F. (2019) Plasticity in three-dimensional geometry of branching corals along a cross-shelf gradient. Diversity, 11 (3). 44.

D'Alberto, Brooke M., Carlson, John K., Pardo, Sebastián, and Simpfendorfer, Colin A. (2019) Population productivity of shovelnose rays: inferring the potential for recovery. PLoS ONE, 14 (11). e0225183.

Duke, Norman C., Field, Colin, Mackenzie, Jock R., Meynecke, Jan-Olaf, and Wood, Apanie L. (2019) Rainfall and its possible hysteresis effect on the proportional cover of tropical tidal wetland mangroves and saltmarsh-saltpans. Marine and Freshwater Research, 70. pp. 1047-1055.

Dujon, Antoine M., Stieglitz, Thomas C., Amice, Erwan, and Webber, D.M. (2019) Snail leaps and bounds: drivers of the diel movement pattern of a large invertebrate, the Caribbean queen conch (Lobatus gigas), in a marginal inshore habitat. Canadian Journal of Zoology, 97 (5). pp. 436-445.

Dumalagan, Edwin E., Cabaitan, Patrick C., Bridge, Tom C.L., Go, Kevin Thomas, Quimpo, Timothy Joseph R., Olavides, Ronald Dionnie D., Munar, Jeffrey C., Villanoy, Cesar L., and Siringan, Fernando P. (2019) Spatial variability in benthic assemblage composition in shallow and upper mesophotic coral ecosystems in the Philippines. Marine Environmental Research, 150. 104772.

Dajka, Jan-Claas, Wilson, Shaun K., Robinson, James P.W., Chong-Seng, Karen M., Harris, Alasdair, and Graham, Nicholas A.J. (2019) Uncovering drivers of juvenile coral density following mass bleaching. Coral Reefs, 38 (4). pp. 637-649.

Duke, Norman C., and Mackenzie, Jock (2018) ECY Report 2017. Final report: East Cape York shoreline environmental surveys. External Commissioned Report. James Cook University, Townsville, QLD, Australia.

DiPerna, Stephanie, Hoogenboom, Mia, Noonan, Sam, and Fabricius, Katharina (2018) Effects of variability in daily light integrals on the photophysiology of the corals Pachyseris speciosa and Acropora millepora. PLoS ONE, 13 (9). e0203882.

Dixson, Danielle L., and Jones, Geoffrey P. (2018) Influence of prior residents on settlement preferences in the anemonefish, Premnas biaculeatus. Coral Reefs, 37 (2). pp. 519-526.

Davey, Peter A., Pernice, Mathieu, Ashworth, Justin, Kuzhiumparambil, Unnikrishnan, Szabó, Milán, Dolferus, Rudy, and Ralph, Peter J. (2018) A new mechanistic understanding of light-limitation in the seagrass Zostera muelleri. Marine Environmental Research, 134. pp. 55-67.

Dulvy, Nicholas K., Simpfendorfer, Colin A., Davidson, Lindsay N.K., Fordham, Sonja V., Bräutigam, Amie, Sant, Glenn, and Welch, David J. (2017) Challenges and priorities in shark and ray conservation. Current Biology, 27 (11). R565-R572.

Dunbar, Kimberley, Baker, Ronnie, and Sheaves, Marcus (2017) Effects of forest width on fish use of fringing mangroves in a highly urbanised tropical estuary. Marine and Freshwater Research, 68 (9). pp. 1764-1770.

Dornelas, Maria, Madin, Joshua S., Baird, Andrew H., and Connolly, Sean R. (2017) Allometric growth in reef-building corals. Proceedings of the Royal Society of London Series B, Biological Sciences, 284 (1851). 20170053.

Doyen, Luke, Bene, Christophe, Bertignac, Michel, Blanchard, Fabian, Cisse, Abdoul Ahad, Dichmont, Catherine, Gourguet, Sophie, Guyader, Olivier, Hardy, Pierre-Yves, Jennings, Sarah, Little, Lorne Richard, Macher, Claire, Mills, David Jonathan, Noussair, Ahmed, Pascoe, Sean, Pereau, Jean-Christophe, Sanz, Nicolas, Schwarz, Anne-Marie, Smith, Tony, and Thebaud, Olivier (2017) Ecoviability for ecosystem-based fisheries management. Fish and Fisheries, 18 (6). pp. 1056-1072.

Dubuc, Alexia, Waltham, Nathan, Malerba, Martino, and Sheaves, Marcus (2017) Extreme dissolved oxygen variability in urbanised tropical wetlands: the need for detailed monitoring to protect nursery ground values. Estuarine, Coastal and Shelf Science, 198 (Part A). pp. 163-171.

Duke, Norman C., Kovacs, John M., Griffiths, Anthony D., Preece, Luke, Hill, Duncan J. E., Van Oosterzee, Penny, Mackenzie, Jock, Morning, Hailey S., and Burrows, Damien (2017) Large-scale dieback of mangroves in Australia’s Gulf of Carpentaria: a severe ecosystem response, coincidental with an unusually extreme weather event. Marine and Freshwater Research, 68 (10). MF16322. pp. 1816-1829.

Duke, Norman C. (2017) Mangrove floristics and biogeography revisited: further deductions from biodiversity hot spots, ancestral discontinuities and common evolutionary processes. In: Rivera-Monroy, Victor H., Lee, Shing Yip, Kristensen, Erik, and Twilley, Robert R., (eds.) Mangrove Ecosystems: A Global Biogeographic Perspective - Structure, Function and Services. Springer International Publishing, Cham, Switzerland, pp. 17-53.

Darling, Emily, Graham, Nicholas A.J., Januchowski-Hartley, Fraser A., Nash, Kirsty L., Pratchett, Morgan S., and Wilson, Shaun (2017) Relationships between structural complexity, coral traits, and reef fish assemblages. Coral Reefs, 36 (2). pp. 561-575.

Denis, Vianney, Ribas-Deulofeu, Lauriane, Sturaro, Nicolas, Kuo, Chao-Yang, and Chen, Chaolun Allen (2017) A functional approach to the structural complexity of coral assemblages based on colony morphological features. Scientific Reports, 7. 9849.

Donelson, Jennifer M., Wong, Marian, Booth, David J., and Munday, Philip L. (2016) Transgenerational plasticity of reproduction depends on rate of warming across generations. Evolutionary Applications, 9 (9). pp. 1072-1081.

Dichmont, Catherine M., Dutra, Leo X.C., Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Deng, Roy A., van Putten, Elizabeth I., Pascual, Ricardo, Dambacher, Jeffrey M., Warne, Michael St.J., Quinn, Ross H., Thébaud, Olivier, Bennett, John, Read, Mark, Wachenfeld, David, Davies, Julia, Garland, Anna, Dunning, Malcolm, Collier, Catherine, Waycott, Michelle, and Playford, Julia (2016) A generic method of engagement to elicit regional coastal management options. Ocean & Coastal Management, 124. pp. 22-32.

D'Anastasi, B.R., van Herwerden, L., Hobbs, J.A., Simpfendorfer, C.A., and Lukoschek, V. (2016) New range and habitat records for threatened Australian sea snakes raise challenges for conservation. Biological Conservation, 194. pp. 66-70.

Dulvy, Nicholas K., Davidson, Lindsay N.K., Kyne, Peter M., Simpfendorfer, Colin, Harrison, Lucy R., Carlson, John K., and Fordham, Sonja V. (2016) Ghosts of the coast: global extinction risk and conservation of sawfishes. Aquatic Conservation: marine and freshwater ecosystems , 26 (1). pp. 134-153.

Di Sciara, Giuseppe Notarbartolo, Hoyt, Erich, Reeves, Randall, Ardron, Jeff, Marsh, Helene, Vongraven, Dag, and Barr, Bradley (2016) Place-based approaches to marine mammal conservation. Aquatic Conservation: marine and freshwater ecosystems, 26 (Suppl. 2). pp. 85-100.

del Mar Palacios , Maria, Warren, Donald T., and McCormick, Mark I. (2016) Sensory cues of a top-predator indirectly control a reef fish mesopredator. Oikos, 125 (2). pp. 201-209.

Dhanjal-adams, Kiran L., Hanson, Jeffrey O., Murray, Nicholas J., Phinn, Stuart R., Wingate, Vladimir R., Mustin, Karen, Lee, Jasmine R., Allan, James R., Cappadonna, Jessica L., Studds, Colin E., Clemens, Robert S., Roelfsema, Chris M., and Fuller, Richard A. (2016) The distribution and protection of intertidal habitats in Australia. Emu, 116 (2). pp. 208-214.

DiBattista, Joseph D., Roberts, May B., Bouwmeester, Jessica, Bowen, Brian W., Coker, Darren J., Lozano-Cortés, Diego F., Choat, J. Howard, Gaither, Michelle R., Hobbs, Jean-Paul A., Khalil, Maha T., Kochzius, Marc, Myers, Robert F., Paulay, Gustav, Robitzch, Vanessa S.N., Saenz-Agudelo, Pablo, Salas, Eva, Sinclair-Taylor, Tane H., Toonen, Robert J., Westneat, Mark W., Williams, Suzanne T., and Berumen, Michael L. (2016) A review of contemporary patterns of endemism for shallow water reef fauna in the Red Sea. Journal of Biogeography, 43 (3). pp. 423-439.

E

Earp, Hannah, Vye, Siobhan, Bohn, Katrin, Burrows, Michael, Chenery, Jade, Dickens, Stephanie, Foster, Charlotte, Grist, Hannah, Lamont, Peter, Long, Sarah, Morrall, Zoe, Pocklington, Jacqueline, Scott, Abigail, Watson, Gordon, West, Victoria, Jenkins, Stuart, Delany, Jane, and Sugden, Heather (2022) Do you see what i see? Quantifying inter-observer variability in an intertidal marine citizen science experiment. Citizen Science: Theory and Practice, 7 (1). 12.

Elder, Holland, Weis, Virginia M., Montalvo Proano, Jose, Mocellin, Veronique J.L., Baird, Andrew H., Meyer, Eli, and Bay, Line K. (2022) Genetic Variation in Heat Tolerance of the Coral Platygyra Daedalea Indicates Potential for Adaptation to Ocean Warming. Frontiers in Marine Science, 9. 925845.

Emmons, Sophia M., D'Alberto, Brooke M., Smart, Jonathan J., and Simpfendorfer, Colin A. (2021) Age and growth of tiger shark (Galeocerdo cuvier) from Western Australia. Marine and Freshwater Research, 72 (7). pp. 950-963.

Espinoza-rodriguez, Ninive, Pernia, Yumara, Severeyn, Hector, Garcia de Severeyn, Yajaira, and Barrios-Garrido, Hector (2021) Echinoderms from the Gulf of Venezuela, north-western coast of Venezuela. Papéis Avulsos de Zoologia, 61. e20216151.

Espinoza-rodriguez, Ninive, and Barrios-Garrido, Hector (2021) First report of a Humpback Whale Megaptera novaeangliae (Borowski, 1781) (Cetartiodactyla: Balaenopteridae) stranding in the Gulf of Venezuela. Ecotropicos, 33. pp. 1-7.

Espinoza, Mario, Ledee, Elodie J.I., Smoothey, Amy F., Heupel, Michelle, Peddemors, Victor M., Tobin, Andrew J., and Simpfendorfer, Colin A. (2021) Intra-specific variation in movement and habitat connectivity of a mobile predator revealed by acoustic telemetry and network analyses. Marine Biology, 168 (6). 80.

Ebner, Brendan C. (2021) Yellowfin bream, Acanthopagrus australis, reorientate individual shells in search of prey. Food Webs, 29. e00216.

Edgar, Graham J., Cooper, Antonia, Baker, Susan C., Barker, William, Barrett, Neville S., Becerro, Mikel A., Bates, Amanda E., Brock, Danny, Ceccarelli, Daniela M., Clausius, Ella, Davey, Marlene, Davis, Tom R., Day, Paul B., Green, Andrew, Griffiths, Samuel R., Hicks, Jamie, Hinojosa, Iván A., Jones, Ben K., Kininmonth, Stuart, Larkin, Meryl F., Lazzari, Natali, Lefcheck, Jonathan S., Ling, Scott D., Mooney, Peter, Oh, Elizabeth, Pérez-Matus, Alejandro, Pocklington, Jacqueline B., Riera, Rodrigo, Sanabria-Fernandez, Jose A., Seroussi, Yanir, Shaw, Ian, Shields, Derek, Shields, Joe, Smith, Margo, Soler, German A., Stuart-Smith, Jemina, Turnbull, John, and Stuart-Smith, Rick D. (2020) Establishing the ecological basis for conservation of shallow marine life using Reef Life Survey. Biological Conservation, 252. 108855.

Epstein, Hannah E., and Kingsford, Michael J. (2019) Are soft coral habitats unfavourable? A closer look at the association between reef fishes and their habitat. Environmental Biology of Fishes, 102. pp. 479-497.

Ebner, Brendan C., Donaldson, James A., Courtney, Robert, Fitzpatrick, Richard, Starrs, Danswell, Fletcher, Cameron S., and Seymour, Jamie (2019) Averting danger under the bridge: video confirms that adult small-toothed morays tolerate salinity before and during tidal influx. Pacific Conservation Biology, 26 (2). pp. 182-189.

Espinoza, Mario, Matley, Jordan, Heupel, Michelle R., Tobin, Andrew J., Fisk, Aaron T., and Simpfendorfer, Colin A. (2019) Multi-tissue stable isotope analysis reveals resource partitioning and trophic relationships of large reef-associated predators. Marine Ecology Progress Series, 615. pp. 159-176.

Epstein, Hannah E., Hallas, Joshua M., Johnson, Rebecca Fay, Lopez, Alessandra, and Gosliner, Terrence M. (2019) Reading between the lines: revealing cryptic species diversity and colour patterns in Hypselodoris nudibranchs (Mollusca: Heterobranchia: Chromodorididae). Zoological Journal of the Linnean Society, 186 (1). pp. 116-189.

Epstein, Hannah E., Torda, Gergely, and van Oppen, Madeleine J.H. (2019) Relative stability of the Pocillopora acuta microbiome throughout a thermal stress event. Coral Reefs, 38 (2). pp. 373-386.

Eurich, J.G., McCormick, M.I., and Jones, G.P. (2018) Habitat selection and aggression as determinants of fine-scale partitioning of coral reef zones in a guild of territorial damselfishes. Marine Ecology Progress Series, 587. pp. 201-215.

Emslie, Michael J., and Pratchett, Morgan S. (2018) Differential vulnerabilities of parrotfishes to habitat degradation. In: Hoey, Andrew S., and Bonaldo, Roberta M., (eds.) Biology of Parrotfishes. Taylor & Francis, Boca Raton, FL, USA, pp. 355-382.

Egan, Joshua P., Bloom, Devin D., Kuo, Chien-Hsien, Hammer, Michael P., Tongnunui, Prasert, Iglésias, Samuel P., Sheaves, Marcus, Grudpan, Chaiwut, and Simons, Andrew M. (2018) Phylogenetic analysis of trophic niche evolution reveals a latitudinal herbivory gradient in Clupeoidei (herrings, anchovies, and allies). Molecular Phylogenetics and Evolution, 124. pp. 151-161.

Eder, Yvonne, Tschink, Daniel, Gerlach, Gabriele, and Strahl, Julia (2018) Physiology of juvenile hydroids: high food availability mitigates stress responses of Hydractinia echinata to increasing seawater temperatures. Journal of Experimental Marine Biology and Ecology, 508. pp. 64-72.

Ern, Rasmus, Johansen, Jacob, Rummer, Jodie L., and Esbaugh, Andrew J. (2017) Effects of hypoxia and ocean acidification on the upper thermal niche boundaries of coral reef fishes. Biology Letters, 13 (7). 20170135.

Ebner, Brendan C., Morgan, David L., Kerezsy, Adam, Hardie, Scott, Beatty, Stephen J., Seymour, Jamie E., Donaldson, James A., Linke, Simon, Peverell, Stirling, Roberts, David, Espinoza, Thomas, Marshall, Nadine, Kroon, Frederieke J., Burrows, Damien W., and McAllister, Ryan R.J. (2016) Enhancing conservation of Australian freshwater ecosystems: identification of freshwater flagship fishes and relevant target audiences. Fish and Fisheries, 17 (4). pp. 1134-1151.

Espinoza, Mario, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2016) Evidence of partial migration in a large coastal predator: opportunistic foraging and reproduction as key drivers? PLoS ONE, 11 (2). e0147608. pp. 1-22.

Ens, Bruno, van de Pol, Martijn, and Goss-Custard, John D. (2014) The study of career decisions: Oystercatchers as social prisoners. In: Naguib, Marc, Barrett, Louise, Brockmann, H. Jane, Healy, Sue, Mitani, John C., Roper, Timothy J., and Simmons, Leigh W., (eds.) Advances in the Study of Behavior. Elsevier, Kidlington, Oxford, UK, pp. 343-420.

Ens, Bruno, Berrevoets, Cor, Bruinzeel, Leo, Bult, Tammo, Haanstra, Lieuwe, Hulscher, Jan, Koks, Ben, van de Pol, Martijn, Rappoldt, Kees, Teunissen, Wolf, and Verhulst, Simon (2003) Synthesis: what caused the current decline of Oystercatchers in the Netherlands? / Synthese: wat veroorzaakt de huidige achteruitgang van Scholeksters in Nederland? Limosa, 76 (1). 34 - 38.

F

Francis, Robin K., Tostevin, Genevieve, Barbasch, Tina, Branconi, Rebecca, Srinivasan, Maya, Jones, Geoffrey P., and Buston, Peter M. (2024) Positive spatial autocorrelation in three habitat quality indicators sets the stage for evolution of adaptive dispersal plasticity in a coral reef fish. Coral Reefs, 43. pp. 69-78.

Fakan, Eric P., Allan, Bridie J.M., Illing, Bjorn, Hoey, Andrew S., and McCormick, Mark I. (2023) Habitat complexity and predator odours impact on the stress response and antipredation behaviour in coral reef fish. PLoS ONE, 18 (6). e0286570.

Frappi, Sofia, Williams, Collin, Pilcher, Nicolas, Rodrigue, Mattie, Marshall, Paul, Pieribone, Vincent, Qurban, Mohammed, and Duarte, Carlos M. (2023) New depth records and novel feeding observations of three elasmobranchs species in the Eastern Red Sea. Frontiers in Marine Science, 10. 1270257.

Fisher, Eric E. (2023) The physical and biological processes driving fish aggregation behaviour. PhD thesis, James Cook University.

Fulton, Stella Elaine (2022) Effects of macroalgal removal on inshore coral reef communities and sedimentation dynamics. Masters (Research) thesis, James Cook University.

Figueiredo, Joana, Thomas, Christopher J., Deleersnijder, Eric, Lambrechts, Jonathan, Baird, Andrew H., Connolly, Sean R., and Hanert, Emmanuel (2022) Global warming decreases connectivity among coral populations. Nature Climate Change, 12 (1). pp. 83-87.

Fitzgerald, L.M., Harrison, H.B., Coker, D.J., Saenz-Agudelo, P., Srinivasan, M., Majoris, J.E., Bostrom Einarsson, L., Pujol, B., Bennett-Smith, M., Thorrold, S.R., Planes, S., Jones, G.P., and Berumen, M.L. (2022) Rank change and growth within social hierarchies of the orange clownfish, Amphiprion percula. Marine Biology, 169 (10). 128.

Fisher, Rebecca, Leis, Jeffrey M., Hogan, J. Derek, Bellwood, David R., Wilson, Shaun K., and Job, Suresh D. (2022) Tropical larval and juvenile fish critical swimming speed (U-crit) and morphology data. Scientific Data, 9 (1). 45.

Friess, Daniel, Dahdouh-Guebas, Farid, Satyanarayana, Behara, Cannicci, Stefano, Chua, Siew Chin, Duke, Norman, Feller, Ilka, Jaafer, Zeehan, Jayatissa, L.P., Koedam, Nico, Krauss, Ken, Lee, Shing Yip, Pineda, Jose Ernesto Mancera, Ruwa, Renison, Vannini, Marco, and Yando, Erik S. (2021) Scientific contributions of the Mangrove Macrobenthos and Management (MMM) conference series, 2000–2019. Estuarine, Coastal and Shelf Science, 248. 106742.

Fulton, Christopher J., Berkstrom, Charlotte, Wilson, Shaun K., Abesamis, Rene, Bradley, Michael, Åkerlund, Carolina, Barrett, Luke T., Bucol, Abner A., Chacin, Dinorah H., Chong-Seng, Karen M., Coker, Darren J., Depczynski, Martial, Eggertsen, Linda, Eggertsen, Maria, Ellis, David, Evans, Richard D., Graham, Nicholas A.J., Hoey, Andrew S., Holmes, Thomas H., Kulbicki, Michel, Leung, Priscilla T.Y., Lam, Paul K. S., van Lier, Joshua, Matis, Paloma A., Noble, Mae M., Perez-Matus, Alejandro, Piggott, Camilla, Radford, Ben T., Tano, Stina, and Tinkler, Paul (2020) Macroalgal meadow habitats support fish and fisheries in diverse tropical seascapes. Fish and Fisheries, 21 (4). pp. 700-717.

Fitzsimmons, Nancy N., Pittard, Stewart D., McIntyre, Nathan, Jensen, Michael P., Guinea, Mick, Hamann, Mark, Kennett, Rod, Leis, Brett, Limpus, Colin J., Limpus, Duncan J., McCann, Megan J., MacDonald, Anna J., McFarlane, Glenn, Parmenter, C. John, Pendoley, Kellie, Prince, Robert T., Scheltinga, Leigh, Theissinger, Kathrin, Tucker, Anton D., Waayers, David, Whiting, Andrea, and Whiting, Scott (2020) Phylogeography, genetic stocks, and conservation implications for an Australian endemic marine turtle. Aquatic Conservation: Marine and Freshwater Ecosystems, 30 (3). pp. 440-460.

Foyle, Kevin L., Hess, Sybille, Powell, Mark D., and Herbert, Neill A. (2020) What is gill health and what is its role in marine finfish aquaculture in the face of a changing climate? Frontiers in Marine Science, 7. 400.

Ferrari, Maud C.O., McCormick, Mark, Fakan, Eric, Barry, Randall, and Chivers, Douglas (2020) The fading of fear effects due to coral degradation is modulated by community composition. Functional Ecology, 34 (10). pp. 2120-2130.

Fulton, Elizabeth A., Punt, André E., Dichmont, Catherine M., Harvey, Chris J., and Gorton, Rebecca (2019) Ecosystems say good management pays off. Fish and Fisheries, 20 (1). pp. 66-96.

Frommel, Andrea Y., Brauner, Colin J., Allan, Bridie J.M., Nicol, Simon, Parsons, Darren M., Pether, Steve M.J., Setiawan, Alvin N., Smith, Neville, and Munday, Philip L. (2019) Organ health and development in larval kingfish are unaffected by ocean acidification and warming. PeerJ, 7. e8266.

Feeney, William E., Brooker, Rohan M., Johnston, Lane N., Gilbert, James D.J., Besson, Marc, Lecchini, David, Dixson, Danielle L., Cowman, Peter F., and Manica, Andrea (2019) Predation drives recurrent convergence of an interspecies mutualism. Ecology Letters, 22 (2). pp. 256-264.

Frisch, Ashley J., Hobbs, Jean-Paul A., Hansen, Scott T., Williamson, David H., Bonin, Mary C., Jones, Geoffrey P., and Rizzari, Justin R. (2019) Recovery potential of mutualistic anemone and anemonefish populations. Fisheries Research, 218. pp. 1-9.

Feitosa, Leonardo Manir, Barbosa Martins, Ana Paula, Giarrizzo, Tommaso, Macedo, Wagner, Monteiro, Iann Leonardo, Gemaque, Romário, Nunes, Jorge Luiz Silva, Gomes, Fernanda, Schneider, Horácio, Sampaio, Iracilda, Souza, Rosália, Sales, João Bráullio, Rodrigues-Filho, Luís Fernando, Tchaicka, Lígia, and Carvalho-Costa, Luís Fernando (2018) DNA-based identification reveals illegal trade of threatened shark species in a global elasmobranch conservation hotspot. Scientific Reports, 8 (1). 3347.

Floeter, Sergio R., Bender, Mariana G., Siqueira Correa, Alexandre C., and Cowman, Peter F. (2018) Phylogenetic perspectives on reef fish functional traits. Biological Reviews, 93 (1). pp. 131-151.

Fisher, Eric E., Choat, John H., McCormick, Mark I., and Cappo, Mike (2018) Relative influence of environmental factors on the timing and occurrence of multi-species coral reef fish aggregations. PLoS ONE, 13 (12). e0209234.

Feary, David A., Bauman, Andrew G., Guest, James, and Hoey, Andrew S. (2018) Trophic plasticity in an obligate corallivorous butterflyfish. Marine Ecology - Progress Series, 605. pp. 165-171.

Fabricius, Katharina E., Noonan, Sam H.C., Abrego, David, Harrington, Lindsay, and De'Ath, Glenn (2017) Low recruitment due to altered settlement substrata as primary constraint for coral communities under ocean acidification. Proceedings of the Royal Society of London Series B, Biological Sciences, 284 (1862).

Ferrari, Renata, Figueira, Will F., Pratchett, Morgan S., Boube, Tatiana, Adam, Arne, Kobelkowsky-Vidrio, Tania, Doo, Steve S., Atwood, Trisha Brooke, and Byrne, Maria (2017) 3D photogrammetry quantifies growth and external erosion of individual coral colonies and skeletons. Scientific Reports, 7.

Fraser, Matthew, Short, Jessie, Kendrick, Gary, McLean, Dianne, Keesing, John, Byrne, Maria, Caley, M. Julian, Clarke, Doug, Davis, Andrew R., Erftemeijer, Paul L.A., Field, Stewart, Gustin-Craig, Sam, Huisman, John, Keough, Mick, Lavery, Paul S., Masini, Ray, McMahon, Kathryn, Mengersen, Kerrie, Rasheed, Michael, Statton, John, Stoddart, Jim, and Wu, Paul (2017) Effects of dredging on critical ecological processes for marine invertebrates, seagrasses and macroalgae, and the potential for management with environmental windows using Western Australia as a case study. Ecological Indicators, 78. pp. 229-242.

Fulton, Christopher J., Wainwright, Peter C., Hoey, Andrew S., and Bellwood, David R. (2017) Global ecological success of Thalassoma fishes in extreme coral reef habitats. Ecology and Evolution, 7 (1). pp. 466-472.

Ferrari, Maud C.O., McCormick, Mark I., Allan, Bridie J.M., and Chivers, Douglas P. (2017) Not equal in the face of habitat change: closely related fishes differ in their ability to use predation-related information in degraded coral. Proceedings of the Royal Society of London Series B, Biological Sciences, 284 (1852). 20162758.

Ferrari, Maud C.O., McCormick, Mark I., Watson, Sue-Ann, Meekan, Mark G., Munday, Philip L., and Chivers, Douglas P. (2017) Predation in high CO2 waters: prey fish from high-risk environments are less susceptible to ocean acidification. Integrative and Comparative Biology, 57 (1). pp. 55-62.

Frisch, Ashley J., Rizzari, Justin R., Munkres, Katherine P., and Hobbs, Jean Paul A. (2016) Anemonefish depletion reduces survival, growth, reproduction and fishery productivity of mutualistic anemone–anemonefish colonies. Coral Reefs, 35 (2). pp. 375-386.

Frisch, Ashley J., Ireland, Matthew, Rizzari, Justin R., Lönnstedt, Oona M., Magnenat, Katalin A., Mirbach, Christopher E., and Hobbs, Jean-Paul A. (2016) Reassessing the trophic role of reef sharks as apex predators on coral reefs. Coral Reefs, 35 (2). pp. 459-472.

Friedman, S.T., Price, S.A., Hoey, A.S., and Wainwright, P.C. (2016) Ecomorphological convergence in planktivorous surgeonfishes. Journal of Evolutionary Biology, 29 (5). pp. 965-978.

Finn, Maureen H., Lönnstedt, Oona M., Rizzari, Justin R., Jones, Geoffrey P., and Frisch, Ashley J. (2016) Experimental bleaching of a tropical sea anemone insitu. Marine Ecology, 37 (3). pp. 691-696.

Frisch, Ashley J., Cameron, Darren S., Pratchett, Morgan S., Williamson, David H., Williams, Ashley J., Reynolds, Adam D., Hoey, Andrew S., Rizzari, Justin R., Evans, Louisa, Kerrigan, Brigid, Muldoon, Geoffrey, Welch, David, and Hobbs, Jean-Paul A. (2016) Key aspects of the biology, fisheries and management of Coral grouper. Reviews in Fish Biology and Fisheries, 26 (3). pp. 303-325.

Fredston-Hermann, Alexa, Brown, Christopher J., Albert, Simon, Klein, Carissa J., Mangubhai, Sangeeta, Nelson, Joanna L., Teneva, Lida, Wenger, Amelia, Gaines, Steven D., and Halpern, Benjamin S. (2016) Where does river runoff matter for coastal marine conservation? Frontiers in Marine Science, 3. 273. pp. 1-10.

G

Gahan, James, Bellwood, David R., Bellwood, Orpha, and Schlaefer, Jodie (2024) Gelatinous versus non-gelatinous zooplankton: their value as food for planktivorous coral reef fishes. Coral Reefs, 43. pp. 243-252.

Grillo, Ana Carolina, Vieira, Edson Aparecido, and Longo, Guilherme Ortigara (2024) Macroalgae and zoanthids require physical contact to harm corals in Southwestern Atlantic. Coral Reefs, 43. pp. 107-118.

Gleadall, Ian G., Che, Leo J., and Hutchinson, Neil (2024) ‘Octopus’ parvus, bean octopus. In: Rosa, Rui, Gleadall, Ian, Pierce, Graham, and Villanueva, Roger, (eds.) Octopus Biology and Ecology. Academic Press, London, United Kingdom, pp. 281-310.

Grillo Monteiro, Ana, and Longo, Guilherme Ortigara (2024) Physical contact stress can trigger larval release in the brooding coral Siderastrea stellata. Marine Biodiversity, 54. 48.

Galbraith, G.F., Cresswell, B.J., McClure, E.C., and Hoey, A.S. (2024) Tropical seamounts as stepping-stones for coral reef fishes: range extensions and new regional distributions from mesophotic ecosystems in the Coral Sea, Australia. Marine Biodiversity, 54. 17.

Grant, Michael I., Kyne, Peter M., James, Julie, Hu, Yi, Mukherji, Sushmita, Amepou, Yolarnie, Baje, Leontine, Chin, Andrew, Johnson, Grant, Lee, Tegan, Mahan, Brandon, Wurster, Christopher, White, William T., and Simpfendorfer, Colin A. (2023) Elemental analysis of vertebrae discerns diadromous movements of threatened non-marine elasmobranchs. Journal of Fish Biology, 103 (6). pp. 1357-1373.

Grinblat, Mila, Eyal-Shaham, Lee, Eyal, Gal, Ben-Zvi, Or, Harii, Saki, Morita, Masaya, Sakai, Kazuhiko, Hirose, Mamiko, Miller, David J., and Loya, Yossi (2023) Energy allocation trade-offs as a function of age in fungiid corals. Frontiers in Marine Science, 10. 1113987.

Godinez-Espinosa, Sara, Raoult, Vincent, Smith, Timothy M., Gaston, Troy F., and Williamson, Jane E. (2023) Functional roles of coral reef primary producers examined with stable isotopes. Marine and Freshwater Research, 74 (7). pp. 601-613.

Gijsbers, J.C., Englebert, N., Prata, K.E., Pichon, M., Dinesen, Z., Brunner, R., Eyal, G., González-Zapata, F.L., Kahng, S.E., Latijnhouwers, K.R.W., Muir, P., Radice, V.Z., Sánchez, J.A., Vermeij, M.J.A., Hoegh-Guldberg, O., Jacobs, S.J., and Bongaerts, P. (2023) Global phylogenomic assessment of Leptoseris and Agaricia reveals substantial undescribed diversity at mesophotic depths. BMC Biology, 21. 147.

Gress Hernandez, Erika, Bridge, Tom, Fyfe, Justin, and Galbraith, Gemma (2023) Novel Interaction between a Rabbitfish and Black Corals. Oceans, 4. pp. 236-241.

Gahan, James, Bellwood, David R., Nankervis, Leo, and Tebbett, Sterling B. (2023) Spatial and temporal variability in tropical off-reef zooplankton across broad spatial and temporal scales. Marine Environmental Research, 191. 106169.

Galbraith, Gemma F., Cresswell, Benjamin J., McCormick, Mark I., and Jones, Geoffrey P. (2023) Strong hydrodynamic drivers of coral reef fish biodiversity on submerged pinnacle coral reefs. Limnology and Oceanography, 68 (11). pp. 2415-2430.

González-Murcia, Saúl, Ekins, Merrick, Bridge, Tom C.L., Battershill, Christopher N., and Jones, Geoffrey P. (2023) Substratum selection in coral reef sponges and their interactions with other benthic organisms. Coral Reefs, 42 (2). pp. 427-442.

Garcia, Vhon Oliver S., Riginos, Cynthia, and Lukoschek, Vimoksalehi (2022) Can sea snakes slither through seascape structure? Comparative phylogeography and population genetics of Hydrophis group sea snakes in Australia and Southeast Asia. Frontiers of Biogeography, 14 (3). e56342.

Galbraith, Gemma F., Cresswell, Benjamin J., McCormick, Mark, Bridge, Thomas C., and Jones, Geoffrey P. (2022) Contrasting hydrodynamic regimes of submerged pinnacle and emergent coral reefs. PLoS ONE, 17 (8). e0273092.

Galbraith, G., McClure, E.C., Barnett, A., Cresswell, B., Burn, D., Huertas Martin, V., Pratchett, M., and Hoey, A. (2022) Diving into The Deep: The Unique Habitats of The Coral Sea Marine Park. Report. Parks Australia, Townsville, QLD, Australia.

Goikoetxea, Alexander, Todd, Erica V., Muncaster, Simon, Lokman, P. Mark, Thomas, Jodi T., Robertson, Holly A., Moraes, Carlos E. De Farias E., and Gemmell, Neil J. (2022) Effects of cortisol on female-to-male sex change in a wrasse. PLoS ONE, 17 (9). e0273779.

González-Murcia, Saúl, Coppock, Amy G., Ekins, Merrick, Battershill, Christopher N., and Jones, Geoffrey P. (2022) Effects of exposure, depth and aspect on sponge communities on a coral reef. Marine Ecology Progress Series, 685. pp. 111-126.

Gurdek-Bas, Rodrigo, Benthuysen, Jessica A., Harrison, Hugo B., Zenger, Kyall R., and van Herwerden, Lynne (2022) The El Niño Southern Oscillation drives multidirectional inter-reef larval connectivity in the Great Barrier Reef. Scientific Reports, 12 (1). 21290.

Goldsworthy, Nisha C., Srinivasan, Maya, Smallhorn-West, Patrick, Cheah, Lit-Chien, Munday, Philip L., and Jones, Geoffrey P. (2022) Life-history constraints, short adult life span and reproductive strategies in coral reef gobies of the genus Trimma. Journal of Fish Biology, 101 (4). pp. 996-1007.

Godfrey, Paul C., Pusey, Bradley J., Pearson, Richard G., and Arthington, Angela H. (2022) Predictable hydrology, habitat and food resources determine fish recruitment dynamics in an incised tropical Australian river. Ecohydrology, 15 (7). e2457.

Garzon, Francesco, Willliams, Collin T., Cochran, Jesse E.M., Tanabe, Lyndsey, Abdulla, Ameer, Berumen, Michael L., Habis, Thamer, Marshall, Paul A., Rodrigue, Mattie, and Hawkes, Lucy A. (2022) A multi-method characterization of Elasmobranch & Cheloniidae communities of the north-eastern Red Sea and Gulf of Aqaba. PLoS ONE, 18 (9). e0275511.

Grol, Monique G.G., Vercelloni, Julie, Kenyon, Tania M., Bayraktarov, Elisa, van den Berg, Cedric P., Harris, Daniel, Loder, Jennifer A., Mihaljević, Morana, Rowland, Phebe I., and Roelfsema, Chris M. (2021) Conservation value of a subtropical reef in south-eastern Queensland, Australia, highlighted by citizen-science efforts. Marine and Freshwater Research, 72 (1). pp. 1-13.

Godfrey, Paul C., Pearson, Richard G., Pusey, Bradley J., and Arthington, Angela H. (2021) Drivers of zooplankton dynamics in a small tropical lowland river. Marine and Freshwater Research, 72 (2). MF20067. pp. 173-185.

Galbraith, G.F., Cresswell, B., McCormick, M.I., Bridge, T.C., and Jones, G.P. (2021) High diversity, abundance and distinct fish assemblages on submerged coral reef pinnacles compared to shallow emergent reefs. Coral Reefs, 40. pp. 335-354.

Gerlach, Gabriele, Kraemer, Philipp, Weist, Peggy, Eickelmann, Laura, and Kingsford, Michael J. (2021) Impact of cyclones on hard coral and metapopulation structure, connectivity and genetic diversity of coral reef fish. Coral Reefs, 40 (4). pp. 999-1011.

Goetze, Jordan, Wilson, Shaun, Radford, Ben, Fisher, Rebecca, Langlois, Tim J., Monk, Jacquomo, Knott, Nathan A., Malcolm, Hamish, Currey-Randall, Leanne M., Ierodiaconou, Daniel, Harasti, David, Barrett, Neville, Babcock, Russell, Bosch, Nestor E., Brock, Danny, Claudet, Joachim, Clough, Jock, Fairclough, David, Heupel, Michelle R., Holmes, Thomas H., Huveneers, Charlie, Jordan, Alan R., McLean, Dianne, Meekan, Mark, Miller, David, Newman, Stephen J., Rees, Matthew J., Roberts, Kelsey E., Saunders, Benjamin J., Speed, Conrad W., Travers, Michael J., Treml, Eric, Whitmarsh, Sasha K., Wakefield, Corey B., and Harvey, Euan S. (2021) Increased connectivity and depth improve the effectiveness of marine reserves. Global Change Biology, 27 (15). pp. 3432-3447.

Grant, Michael I., White, William, Amepou, Yolarnie, Appleyard, Sharon, Baje, Leontine, Devloo-Delva, Florian, Fuetry, Pierre, Ibana, Dotty, Jogo, Dick, Jogo, Stanley, Kyne, Peter, Mana, Ralph, Mapmani, Nigel, Nagul, Anthony, Roeger, Darcy, Simpfendorfer, Colin, and Chin, Andrew (2021) Papua New Guinea: a potential refuge for threatened Indo–Pacific river sharks and sawfishes. Frontiers in Conservation Science, 2. 719981.

Galbraith, Gemma Frances (2021) The ecology of fishes on submerged pinnacle coral reefs. PhD thesis, James Cook University.

Garra, Stephanie, Hall, April, and Kingsford, Michael J. (2020) The effects of predation on the condition of soft corals. Coral Reefs, 39 (5). pp. 1329-1343.

Gacesa, Ranko, Hung, Julia Yun-hsuan, Bourne, David G., and Long, Paul F. (2020) Horizontal transfer of a natterin-like toxin encoding gene within the holobiont of the reef building coral Acropora digitifera (Cnidaria:Anthozoa: Scleractinia) and across multiple animal linages. Journal of Venom Research, 10. pp. 7-12.

Gainsford, A., Jones, G.P., Gardner, M.G., and van Herwerden, L. (2020) Characterisation and cross-amplification of 42 microsatellite markers in two Amphiprion species (Pomacentridae) and a natural hybrid anemonefish to inform genetic structure within a hybrid zone. Molecular Biology Reports, 47 (2). pp. 1521-1525.

Gonzalez-Pestana, Adriana, Maguiño, Rossana, Mendoza, Alejandra, Kelez, Shaleyla, and Ramírez-Macías, Dení (2020) Distribution of whale shark (Rhincodon typus) off northern Peru based on habitat suitability. Aquatic Conservation: Marine and Freshwater Ecosystems, 30 (7). pp. 1325-1336.

Gierz, Sarah, Ainsworth, Tracy D., and Leggat, William (2020) Diverse symbiont bleaching responses are evident from 2-degree heating week bleaching conditions as thermal stress intensifies in coral. Marine and Freshwater Research, 71 (9). pp. 1149-1160.

Graba-Landry, Alexia C., Loffler, Zoe, McClure, Eva C., Pratchett, Morgan S., and Hoey, Andrew S. (2020) Impaired growth and survival of tropical macroalgae (Sargassum spp.) at elevated temperatures. Coral Reefs, 339. pp. 475-486.

González-Rivero, Manuel, Beijbom, Oscar, Rodriguez-Ramirez, Alberto, Bryant, Dominic E.P., Ganase, Anjani, Gonzalez-Marrero, Yeray, Herrera-Reveles, Ana, Kennedy, Emma V., Kim, Catherine J.S., Lopez-Marcano, Sebastian, Markey, Kathryn, Neal, Benjamin P., Osborne, Kate, Reyes-Nivia, Catalina, Sampayo, Eugenia M., Stolberg, Kristin, Taylor, Abbie, Vercelloni, Julie, Wyatt, Mathew, and Hoegh-Guldberg, Ove (2020) Monitoring of coral reefs using artificial intelligence: a feasible and cost-effective approach. Remote Sensing, 12 (3). 489.

Goatley, Christopher H.R., Brandl, Simon J., Wroe, Stephen, and Bellwood, David R. (2020) Simple larvae sustain the world's smallest marine vertebrates. Coral Reefs, 40. pp. 75-82.

Gress, Erika, Opresko, Dennis M., Brugler, Mercer R., Wagner, Daniel, Eeckhaut, Igor, and Terrana, Lucas (2020) Widest geographic distribution of a shallow and mesophotic antipatharian coral (Anthozoa: Hexacorallia): Antipathes grandis VERRILL, 1928 – confirmed by morphometric and molecular analyses. Marine Biodiversity Records, 13 (12).

Gordon, Timothy A. C., Radford, Andrew N., Davidson, Isla K., Barnes, Kasey, McCloskey, Kieran, Nedelec, Sophie L., Meekan, Mark G., McCormick, Mark I., and Simpson, Stephen D. (2019) Acoustic enrichment can enhance fish community development on degraded coral reef habitat. Nature Communications, 10. 5414.

Grant, Michael I., Kyne, Peter M., Simpfendorfer, Colin A., White, William, and Chin, Andrew (2019) Categorising use patterns of non-marine environments by elasmobranchs and a review of their extinction risk. Reviews in Fish Biology and Fisheries, 29 (3). pp. 1-22.

Gaboriau, Theo, Albouy, Camille, Descombes, Patrice, Mouillot, David, Pellissier, Loic, and Leprieur, Fabien (2019) Ecological constraints coupled with deep-time habitat dynamics predict the latitudinal diversity gradient in reef fishes. Proceedings of the Royal Society of London Series B, Biological Sciences, 286 (1911).

González-Pestana, Adriana, Acuña-Perales, Nicolas, Córdova, Francisco, Coasaca, Javier, Alfaro, Eliana, Alfaro-Shigueto, Joanna, and Mangel, Jeffrey C. (2019) Feeding habits of thresher sharks Alopias sp. in northern Peru: predators of Humboldt squid (Dosidicus gigas). Journal of the Marine Biological Association of the United Kingdom, 99 (3). pp. 695-702.

George, Lachlan W., Martins, Ana P.B., Heupel, Michelle R., and Simpfendorfer, Colin A. (2019) Fine-scale movements of juvenile blacktip reef sharks Carcharhinus melanopterus in a shallow nearshore nursery. Marine Ecology Progress Series, 623. pp. 85-97.

Gray, C.A., Miskiewicz, A.G., Otway, N.M., and Kingsford, M.J. (2019) Historical daytime vertical structure of larval fish assemblages in southeast Australian coastal waters: a benchmark for examining regional ecosystem change. Regional Studies in Marine Science, 29. 100634.

Giffin, Alyssa L., Rueger, Theresa, and Jones, Geoffrey P. (2019) Ontogenetic shifts in microhabitat use and coral selectivity in three coral reef fishes. Environmental Biology of Fishes, 102 (1). pp. 55-67.

Gershwin, L., and Kingsford, M. J. (2019) Pelagic jellyfishes and comb jellies. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: Biology, Environment and Management. CSIRO Publishing, Clayton South, VIC, Australia, pp. 247-256.

Graham, Nicholas A.J., Wilson, Shaun K., Carr, Peter, Hoey, Andrew S., Jennings, Simon, and MacNeil, M. Aaron (2018) Seabirds enhance coral reef productivity and functioning in the absence of invasive rats. Nature, 559. pp. 250-253.

Garavelli, Lysel, Studivan, Michael S., Voss, Joshua D., Kuba, Alyson, Figueiredo, Joana, and Chérubin, Laurent M. (2018) Assessment of mesophotic coral ecosystem connectivity for proposed expansion of a marine sanctuary in the Northwest Gulf of Mexico: larval dynamics. Frontiers in Marine Science, 5. 174.

George, Anita Mary, Brodie, Jon, Daniell, James, Capper, Angela, and Jonker, Michelle (2018) Can sponge morphologies act as environmental proxies to biophysical factors in the Great Barrier Reef, Australia? Ecological Indicators, 93. pp. 1152-1162.

Goetze, Jordan S., Langlois, Tim J., McCarter, Joe, Simpfendorfer, Colin A., Hughes, Alec, Tingo Leve, Jacob, and Jupiter, Stacy D. (2018) Drivers of reef shark abundance and biomass in the Solomon Islands. PLoS ONE, 13 (7). e0200960.

Gaboriau, Theo, Leprieur, Fabien, Mouillot, David, and Hubert, Nicolas (2018) Influence of the geography of speciation on current patterns of coral reef fish biodiversity across the Indo-Pacific. Ecography, 41 (8). pp. 1295-1306.

Grant, Michael I., Smart, Jonathan J., White, William T., Chin, Andrew, Baje, Leontine, and Simpfendorfer, Colin A. (2018) Life history characteristics of the silky shark Carcharhinus falciformis from the central west Pacific. Marine and Freshwater Research, 69 (4). pp. 562-573.

Green, Madeline E., D'Anastasi, Blanche R., Hobbs, Jean-Paul A., Feldheim, Kevin, McAuley, Rory, Peverell, Stirling, Stapley, Jason, Johnson, Grant, Appleyard, Sharon A., White, William T., Simpfendorfer, Colin A., and van Herwerden, Lynne (2018) Mixed-marker approach suggests maternal philopatry and sex-biased behaviours of narrow sawfish Anoxypristis cuspidata. Endangered Species Research, 37. pp. 45-54.

Graba-Landry, Alexia, Hoey, Andrew S., Matley, Jordan K., Sheppard-Brennand, Hannah, Poore, Alistair G.B., Byrne, Maria, and Dworjanyn, Symon A. (2018) Ocean warming has greater and more consistent negative effects than ocean acidification on the growth and health of subtropical macroalgae. Marine Ecology-Progress Series, 595. pp. 55-69.

Giakoumi, Sylvaine, McGowan, Jennifer, Mills, Morena, Beger, Maria, Bustamante, Rodrigo H., Charles, Anthony, Christie, Patrick, Fox, Matthew, Garcia-Borboroglu, Pablo, Gelcich, Stefan, Guidetti, Paolo, Mackelworth, Peter, Maina, Joseph M., McCook, Laurence, Micheli, Fiorenza, Morgan, Lance E., Mumby, Peter J., Reyes, Laura M., White, Alan, Grorud-Colvert, Kirsten, and Possingham, Hugh P. (2018) Revisiting "success" and "failure" of marine protected areas: a conservation scientist perspective. Frontiers in Marine Science, 5. 223.

Gervais, Connor R., Nay, Tiffany J., Renshaw, Gillian, Johansen, Jacob L., Steffensen, John F., and Rummer, Jodie L. (2018) Too hot to handle? Using movement to alleviate effects of elevated temperatures in a benthic elasmobranch, Hemiscyllium ocellatum. Marine Biology, 165 (11). 162.

Goatley, C.H.R., Wroe, S., Tebbett, S.B., and Bellwood, D.R. (2018) An evaluation of a double-tailed deformity in a coral-reef surgeonfish Acanthurus nigrofuscus (Acanthuridae) using micro-computed tomography. Journal of Fish Biology, 92 (5). pp. 1645-1650.

Gingins, Simon, Marcadier, Fanny, Wismer, Sharon, Krattinger, Oceane, Quattrini, Fausto, Bshary, Redouan, and Binning, Sandra A. (2018) The performance of cleaner wrasse, Labroides dimidiatus, in a reversal learning task varies across experimental paradigms. PeerJ, 6. e4745.

Goulet, Tamar L., Shirur, Kartick P., Ramsby, Blake D., and Iglesias-Prieto, Roberto (2017) The effects of elevated seawater temperatures on Caribbean gorgonian corals and their algal symbionts, Symbiodinium spp. PLoS ONE, 12 (2). e0171032.

Gonzalez-Pestana, Adriana, Acuña-Perales, Nicolas, Coasaca-Cespedes, Javier, Cordova-Zavaleta, Francisco, Alfaro-Shigueto, Joanna, Mangel, Jeffrey C., and Espinoza, Pepe (2017) Trophic ecology of the smooth hammerhead shark (Sphyrna Zygaena) off the coast of northern Peru. Fishery Bulletin, 115 (4). pp. 451-459.

Graham, Nicholas A.J., McClanahan, Tim R., MacNeil, M. Aaron, Wilson, Shaun K., Cinner, Joshua E., Huchery, Cindy, and Holmes, Thomas H. (2017) Human disruption of coral reef trophic structure. Current Biology, 27 (2). pp. 231-236.

Grutter, A.S., Blomberg, S.P., Fargher, B., Kuris, A.M., McCormick, M.I., and Warner, R.R. (2017) Size-related mortality due to gnathiid isopod micropredation correlates with settlement size in coral reef fishes. Coral Reefs, 36 (2). pp. 549-559.

Goatley, Christopher H.R., González-Cabello, Alonso, and Bellwood, David R. (2017) Small cryptopredators contribute to high predation rates on coral reefs. Coral Reefs, 36 (1). pp. 207-212.

Graham, E.M., Baird, A.H., Connolly, S.R., Sewell, M.A., and Willis, B.L. (2017) Uncoupling temperature-dependent mortality from lipid depletion for scleractinian coral larvae. Coral Reefs, 36 (1). pp. 97-104.

Goatley, Christopher Harry Robert, and Bellwood, David Roy (2016) Body size and mortality rates in coral reef fishes: a three-phase relationship. Proceedings of the Royal Society of London Series B, Biological Sciences, 283. 20161858. pp. 1-6.

González-Murcia, Saúl, Batres, Francisco Chicas, and Lovo, Mauricio H. (2016) Community structure and height distribution of intertidal rockpool fish in Los Cóbanos, El Salvador. Pan-American Journal of Aquatic Sciences, 11 (3). pp. 227-242.

Gordon, Sophie, Goatley, Christopher H.R., and Bellwood, David R. (2016) Composition and temporal stability of turf sediments on inner-shelf coral reefs. Marine Pollution Bulletin, 111 (1-2). pp. 178-183.

Guo, Zixiao, Huang, Yelin, Chen, Yongmei, Duke, Norman C., Zhong, Cairong, and Shi, Sugua (2016) Genetic discontinuities in a dominant mangrove Rhizophora apiculata (Rhizophoraceae) in the Indo-Malesian region. Journal of Biogeography, 43. pp. 1856-1868.

Gardiner, N.M., and Jones, G.P. (2016) Habitat specialisation, site fidelity and sociality predict homing success in coral reef cardinalfish. Marine Ecology Progress Series, 558. pp. 81-96.

Gordon, Sophie E., Goatley, Christopher H.R., and Bellwood, David R. (2016) Low-quality sediments deter grazing by the parrotfish Scarus rivulatus on inner-shelf reefs. Coral Reefs, 35 (1). pp. 285-291.

Goatley, C.H.R., González-Cabello, Alonso, and Bellwood, David R. (2016) Reef-scale partitioning of cryptobenthic fish assemblages across the Great Barrier Reef, Australia. Marine Ecology - Progress Series, 544. pp. 271-280.

H

Hook, Sharon E., Smith, Rachael A., Waltham, Nathan, and Warne, Michael St.J. (2024) Pesticides in the Great Barrier Reef catchment area: Plausible risks to fish populations. Integrated Environmental Assessment and Management. (In Press)

Harrison, H.B., Drane, L., Cresswell, B.J., Evans, R.D., Galbraith, G.F., Srinivasan, M., Taylor, B.M., Williamson, D.H., and Jones, G.P. (2023) Ageing of juvenile coral grouper (Plectropomus maculatus) reveals year-round spawning and recruitment: implications for seasonal closures. Proceedings of the Royal Society of London Series B, Biological Sciences, 290. 20230584.

Herrera, Marcela, Ravasi, Timothy, and Laudet, Vincent (2023) Anemonefishes: A model system for evolutionary genomics. F1000Research, 12. 204.

Hutchings, Marissa J., Hamann, Mark, Smithers, Scott G., Daley, Emily, and Birtles, R. Alastair (2023) Color pattern complexity in dwarf minke whales (Balaenoptera acutorostrata) of the northern Great Barrier Reef of Australia. Marine Mammal Science, 39 (3). pp. 780-793.

Hermanto, B., Bourne, D.G., and Smith, H. (2023) Comparative image analysis approaches to assess ecological effects of macroalgal removal on inshore reefs of Magnetic Island, Australia. In: IOP Conference Series: Earth and Environmental Science (1137) 012052. From: MarBioUtiCoM: International Seminar on Marine Biodiversity, Utilization, Conservation and Management, 8-9 August 2022, Online.

Hall, April E., Sievers, Katie T., and Kingsford, Michael J. (2023) Conservation benefits of no-take marine reserves outweigh modest benefits of partially protected areas for targeted coral reef fishes. Coral Reefs, 42. pp. 319-333.

Hoey, A.S., Burn, D., Chandler, J.F., Huertas, V., Cresswell, B.J., Galbraith, G.F., and McClure, E.C. (2023) Coral Sea Marine Park Coral Reef Health Survey 2023. Report. Parks Australia, Townsville, QLD, Australia.

Hoegh-Guldberg, Ove, Skirving, William, Dove, Sophie G., Spady, Blake L., Norrie, Andrew, Geiger, Erick F., Liu, Gang, De La Cour, Jacqueline L., and Manzello, Derek P. (2023) Coral reefs in peril in a record-breaking year. Science, 382 (6676). pp. 1238-1240.

Harris, Daniel, Webster, Jody, Vila-Concejo, Ana, Duce, Stephanie, Leon, Javier, and Hacker, Stephanie (2023) Defining multi-scale surface roughness of a coral reef using a high-resolution LiDAR digital elevation model. Geomorphology, 439. 108852.

Hughes, Terry P., Baird, Andrew H., Morrison, Tiffany H., and Torda, Gergely (2023) Principles for coral reef restoration in the anthropocene. One Earth, 6 (6). pp. 656-665.

Hasenei, Aaron, Donelson, Jennifer M., Ravasi, Timothy, and Rummer, Jodie L. (2023) Sharks and their relatives: can their past help predict their future? Frontiers in Marine Science, 10. 1268532.

Hua, Qiaz Q.H., Thomson, Vicki A., Strugnell, Jan M., Martino, Jasmin C., Gillanders, Bronwyn M., and Doubleday, Zoe A. (2023) Using genomics and morphometrics to monitor data-poor and commercially exploited octopod populations. Marine Biology, 170 (10). 119.

Hirschfeld, Maximilian, Barnett, Adam, Sheaves, Marcus, and Dudgeon, Christine (2023) What Darwin could not see: island formation and historical sea levels shape genetic divergence and island biogeography in a coastal marine species. Heredity, 131. pp. 189-200.

Hemingson, Christopher R., Mihalitsis, Michalis, and Bellwood, David R. (2022) Are fish communities on coral reefs becoming less colourful? Global Change Biology, 28 (10). pp. 3321-3332.

Hoey, A.S., McClure, E.C., Burn, D., Chandler, J.F., Huertas Martin, V., Cresswell, B., Galbraith, G., and Pratchett, M.S. (2022) Coral Sea Marine Park Coral Reef Health Survey 2022. Report. Parks Australia, Townsville, QLD, Australia.

He, Ziwen, Feng, Xiao, Chen, Qipian, Li, Liangwei, Li, Sen, Han, Kai, Guo, Zixiao, Wang, Jiayan, Liu, Min, Shi, Chengcheng, Xu, Shaohua, Shao, Shao, Liu, Xin, Mao, Xiaomeng, Xie, Wei, Wang, Xinfeng, Zhang, Rufan, Li, Guohong, Wu, Weihong, Zheng, Zheng, Zhong, Cairong, Duke, Norman C., Boufford, David E., Fan, Guangyi, Wu, Chung I., Ricklefs, Robert E., and Shi, Suhua (2022) Evolution of coastal forests based on a full set of mangrove genomes. Nature Ecology and Evolution, 6. pp. 738-749.

Horowitz, Jeremy, Opresko, Dennis, Molodtsova, Tina N., Beaman, Robin J., Cowman, Peter F., and Bridge, Tom C.L. (2022) Five new species of black coral (Anthozoa; Antipatharia) from the Great Barrier Reef and Coral Sea, Australia. Zootaxa, 5213 (1). pp. 1-35.

Hobbs, Jean-Paul A., Richards, Zoe T., Popovic, Iva, Lei, Chuan, Staeudle, Timo M., Montanari, Stefano R., and Dibattista, Joseph D. (2022) Hybridisation and the evolution of coral reef biodiversity. Coral Reefs, 41. pp. 535-549.

Hillcoat, Kyle Baron (2022) Latitudinal variations in the age-based demography of two large predatory reef fishes (Lutjanus malabaricus and Lutjanus sebae) in Queensland, Australia. PhD thesis, James Cook University.

Hagger, Valerie, Waltham, Nathan J., and Lovelock, Catherine E. (2022) Opportunities for coastal wetland restoration for blue carbon with co-benefits for biodiversity, coastal fisheries, and water quality. Ecosystem Services, 55. 101423.

Hamann, Mark, Shimada, Takahiro, Duce, Stephanie, Foster, Alyssa, To, Althea Tsz Ying, and Limpus, Colin (2022) Patterns of nesting behaviour and nesting success for green turtles at Raine Island, Australia. Endangered Species Research, 47. pp. 217-229.

Hall, April, Cameron, Darren, and Kingsford, Michael (2022) Prohibiting spearfishing boosts conservation outcomes for partially protected areas. Biological Conservation, 272. 109662.

Hyde, Ciaran A., Notarbartolo di Sciara, Giuseppe, Sorrentino, Lynn, Boyd, Charlotte, Finucci, Brittany, Fowler, Sarah L., Kyne, Peter M., Leurs, Guido, Simpfendorfer, Colin A., Tetley, Michael J., Womersley, Freya, and Jabado, Rima W. (2022) Putting sharks on the map: A global standard for improving shark area-based conservation. Frontiers in Marine Science, 9. 968853.

Hill, Tessa S., and Hoogenboom, Mia O. (2022) The indirect effects of ocean acidification on corals and coral communities. Coral Reefs, 41. pp. 1557-1583.

Hari, Katelyn A., Jaiteh, Vanessa, and Chin, Andrew (2022) The sharks and rays of Palau: Biological diversity, status, and social and cultural dimensions. Pacific Conservation Biology, 28 (5). pp. 398-413.

Harvey, Euan S., Mclean, Dianne L., Goetze, Jordan S., Saunders, Benjamin J., Langlois, Tim J., Monk, Jacquomo, Barrett, Neville, Wilson, Shaun K., Holmes, Thomas H., Ierodiaconou, Daniel, Jordan, Alan R., Meekan, Mark G., Malcolm, Hamish A., Heupel, Michelle R., Harasti, David, Huveneers, Charlie, Knott, Nathan A., Fairclough, David V., Currey-Randall, Leanne M., Travers, Michael J., Radford, Ben T., Rees, Matthew J., Speed, Conrad W., Wakefield, Corey B., Cappo, Mike, and Newman, Stephen J. (2021) The BRUVs workshop – An Australia-wide synthesis of baited remote underwater video data to answer broad-scale ecological questions about fish, sharks and rays. Marine Policy, 127. 104430.

Herrera Acosta, César Augusto (2021) Biodiversity beyond species census: assessing organisms' traits and functional attributes using computer vision. PhD thesis, James Cook University.

Hannan, Kelly D., McMahon, Shannon J., Munday, Philip L., and Rummer, Jodie L. (2021) Contrasting effects of constant and fluctuating pCO₂ conditions on the exercise physiology of coral reef fishes. Marine Environmental Research, 163. 105224.

Hoey, A.S., Harrison, H., McClure, E.C., Burn, D., Barnett, A., Cresswell, B., Doll, P.C., Galbraith, G., and Pratchett, M.S. (2021) Coral Sea Marine Park Coral Reef Health Survey 2021: Report on reef surveys February 2021. Report. Parks Australia, Townsville, QLD, Australia.

Hillcoat, Suzanne K., Curnock, Matthew I., Gardiner, Naomi M., and Birtles, R. Alastair (2021) Developing protocols for in‐water morphometric measurements of cetaceans using stereo‐videogrammetry. Marine Mammal Science, 37 (1). pp. 45-63.

Hewitt, Daniel E., Taylor, Matthew D., Raoult, Vincent, Smith, Timothy M., and Gaston, Troy (2021) Diet-tissue discrimination and turnover of δ 13 C and δ 15 N in muscle tissue of a penaeid prawn. Rapid Communications in Mass Spectrometry, 35 (19). e9167.

Hannan, Kelly D. (2021) Effects of diel pCO₂ fluctuations on coral reef fishes now and into the future. PhD thesis, James Cook University.

Hughes, Terry P., Kerry, James T., Connolly, Sean R., Alvarez-Romero, Jorge G., Eakin, C. Mark, Heron, Scott F., Gonzalez, Migdonio A., and Moneghetti, Joanne (2021) Emergent properties in the responses of tropical corals to recurrent climate extremes. Current Biology, 31 (23). pp. 5393-5399.

Hall, April E., and Kingsford, Michael J. (2021) Habitat type and complexity drive fish assemblages in a tropical seascape. Journal of Fish Biology, 99 (4). pp. 1364-1379.

Huertas Martin, Victor, Morais, Renato A., Bonaldo, Roberta M., and Bellwood, David R. (2021) Parrotfish corallivory on stress-tolerant corals in the Anthropocene. PLoS ONE, 16 (9). e0250725.

Hall, April E., Cameron, Darren S., and Kingsford, Mike J. (2021) Partially protected areas as a management tool on inshore reefs. Reviews in Fish Biology and Fisheries, 31. pp. 631-561.

Hemingson, Christopher Rae (2021) The colours of coral reef fishes. PhD thesis, James Cook University.

Huertas Martín, Víctor (2021) The trophic ecology of reef fishes: the cnidarian challenge. PhD thesis, James Cook University.

Hemingson, Christopher R., Cowman, Peter F., and Bellwood, David R. (2020) Body size determines eyespot size and presence in coral reef fishes. Ecology and Evolution, 10 (15). pp. 8144-8152.

Hein, Margaux Y., Beeden, Roger, Birtles, Alastair, Gardiner, Naomi M., Le Berre, Thomas, Levy, Jessica, Marshall, Nadine, Scott, Chad M., Terry, Lisa, and Willis, Bette L. (2020) Coral restoration effectiveness: multiregional snapshots of the long-term responses of coral assemblages to restoration. Diversity, 12 (4). 153.

Hughes, A.T., Hamilton, R.J., Choat, J.H., and Rhodes, K.L. (2020) Declining grouper spawning aggregations in Western Province, Solomon Islands, signal the need for a modified management approach. PLoS ONE, 15 (3). e0230485.

Hannan, Kelly D., Miller, Gabrielle M., Watson, Sue-Ann, Rummer, Jodie L., Fabricius, Katharina, and Munday, Philip L. (2020) Diel pCO(2)variation among coral reefs and microhabitats at Lizard Island, Great Barrier Reef. Coral Reefs, 39. pp. 1391-1406.

Hein, Margaux Y., Beeden, Roger, Birtles, R. Alastair, Chase, Tory J., Couture, Fanny, Haskin, Elouise, Marshall, Nadine, Ripple, Kayla, Terry, Lisa, Willis, Bette L., Willis, Reanna, Gardiner, Naomi M., and UNSPECIFIED (2020) Effects of coral restoration on fish communities: snapshots of long-term, multiregional responses and implications for practice. Restoration Ecology, 28 (5). pp. 1158-1171.

Huerlimann, R., Cooper, M.K., Edmunds, R.C., Villacorta-Rath, C., Le Port, A., Robson, H.L.A., Strugnell, J.M., Burrows, D., and Jerry, D.R. (2020) Enhancing tropical conservation and ecology research with aquatic environmental DNA methods: an introduction for non-environmental DNA specialists. Animal Conservation, 23 (6). pp. 632-645.

Hemingson, Christopher R., and Bellwood, David R. (2020) Greater multihabitat use in Caribbean fishes when compared to their Great Barrier Reef counterparts. Estuarine, Coastal and Shelf Science, 239. 106748.

Henderson, Christopher J., Gilby, Ben L., Schlacher, Thomas A., Connolly, Rod M., Sheaves, Marcus, Maxwell, Paul S., Flint, Nicole, Borland, Hayden P., Martin, Tyson S.H., Gorissen, Bob, and Olds, Andrew D. (2020) Landscape transformation alters functional diversity in coastal seascapes. Ecography, 43 (1). pp. 138-148.

Henderson, Christopher J., Gilby, Ben L., Schlacher, Thomas A., Connolly, Rod M., Sheaves, Marcus, Maxwell, Paul S., Flint, Nicole, Borland, Hayden P., Martin, Tyson S.H., and Olds, Andrew D. (2020) Low redundancy and complementarity shape ecosystem functioning in a low-diversity ecosystem. Journal of Animal Ecology, 89. pp. 784-794.

Horowitz, Jeremy, Brugler, Mercer R., Bridge, Tom C.L., and Cowman, Peter F. (2020) Morphological and molecular description of a new genus and species of black coral (Cnidaria: Anthozoa: Hexacorallia: Antipatharia: Antipathidae: Blastopathes) from Papua New Guinea. Zootaxa, 4821 (3). pp. 553-569.

Horwitz, Rael, Norin, Tommy, Watson, Sue-Ann, Pistevos, Jennifer C.A., Beldade, Ricardo, Hacquart, Simon, Gattuso, Jean-Pierre, Rodolfo-Metalpa, Riccardo, Vidal-Dupiol, Jeremie, Killen, Shaun S., and Mills, Suzanne C. (2020) Near-future ocean warming and acidification alter foraging behaviour, locomotion, and metabolic rate in a keystone marine mollusc. Scientific Reports, 10. 5461.

Houk, Peter, Comeros-Raynal, Mia, Lawrence, Alice, Sudek, Mareike, Vaeoso, Motusaga, McGuire, Kim, and Regis, Josephine (2020) Nutrient thresholds to protect water quality and coral reefs. Marine Pollution Bulletin, 159. 111451.

Hoffmann, Luke, Edwards, Will, York, Paul H., and Rasheed, Michael A. (2020) Richness of primary producers and consumer abundance mediate epiphyte loads in a tropical seagrass system. Diversity, 12 (10). 384.

Hewitt, Daniel E., Smith, Timothy M., Raoult, Vincent, Taylor, Matthew D., and Gaston, Troy F. (2020) Stable isotopes reveal the importance of saltmarsh-derived nutrition for two exploited penaeid prawn species in a seagrass dominated system. Estuarine, Coastal and Shelf Science, 236. 106622.

Huertas, Victor, and Bellwood, David R. (2020) Trophic separation in planktivorous reef fishes: a new role for mucus? Oecologia, 192 (3). pp. 813-822.

Harrison, Hugo B., Bode, Michael, Williamson, David H., Berumen, Michael L., and Jones, Geoffrey P. (2020) A connectivity portfolio effect stabilizes marine reserve performance. Proceedings of the National Academy of Sciences, 117 (41). pp. 25595-25600.

Hayes, Matthew A., McClure, Eva C., York, Paul H., Jinks, Kristin I., Rasheed, Michael A., Sheaves, Marcus, and Connolly, Rod M. (2020) The differential importance of deep and shallow seagrass to Nekton assemblages of The Great Barrier Reef. Diversity, 12 (8). 292.

Hannan, Kelly D., Munday, Philip L., and Rummer, Jodie L. (2020) The effects of constant and fluctuating elevated pCO(2) levels on oxygen uptake rates of coral reef fishes. Science of the Total Environment, 741. 140334.

Healy, Teleah Joy, Hill, Nicholas James, Barnett, Adam, and Chin, Andrew (2020) A global review of elasmobranch tourism activities, management and risk. Marine Policy, 118. 103964.

Han, Guo-dong, Cartwright, Stephen R., Ganmanee, Monthon, Chan, Benny K.K., Adzis, Kee A.A., Hutchinson, Neil, Wang, Jie, Hui, T.Y., Williams, Gray, and Dong, Yun-wei (2019) High thermal stress responses of Echinolittorina snails at their range edge predict population vulnerability to future warming. Science of the Total Environment, 647. pp. 763-771.

Hemingson, Christopher R., Cowman, Peter F., Hodge, Jennifer R., and Bellwood, David R. (2019) Colour pattern divergence in reef fish species is rapid and driven by both range overlap and symmetry. Ecology Letters, 22 (1). pp. 190-199.

Henderson, Christopher J., Gilby, Ben L., Schlacher, Thomas A., Connolly, Rod M., Sheaves, Marcus, Flint, Nicole, Borland, Hayden P., and Olds, Andrew D. (2019) Contrasting effects of mangroves and armoured shorelines on fish assemblages in tropical estuarine seascapes. ICES Journal of Marine Science, 76 (4). pp. 1052-1061.

Hein, Margaux Y., Birtles, Alastair, Willis, Bette L., Gardiner, Naomi, Beeden, Roger, and Marshall, Nadine A. (2019) Coral restoration: socio-ecological perspectives of benefits and limitations. Biological Conservation, 229. pp. 14-25.

Heupel, Michelle R., Munroe, Samantha E. M., Ledee, Elodie J. I., Chin, Andrew, and Simpfendorfer, Colin A. (2019) Interspecific interactions, movement patterns and habitat use in a diverse coastal shark assemblage. Marine Biology, 166 (6). 68.

Huertas Martin, Victor, and Byrne, Maria (2019) Observation of mass spawning of the sea cucumber Holothuria coluber at Lizard Island, Great Barrier Reef, Australia. SPC Beche-de-mer Information Bulletin, 39. pp. 79-80.

Hall, A. E., Vitale, L., and Kingsford, M. J. (2019) Planktonic larval duration, early growth, and the influence of dietary input on the otolith microstructure of Scolopsis bilineatus (Nemipteridae). Environmental Biology of Fishes, 102 (4). pp. 541-552.

Hilmi, Nathalie, Osborn, David, Acar, Sevil, Bambridge, Tamatoa, Chlous, Frederique, Cinar, Mine, Djoundourian, Salpie, Haraldsson, Gunnar, Lam, Vicky W.Y., Maliki, Samir, de Marffy Mantuano, Annick, Marshall, Nadine, Marshall, Paul, Pascal, Nicolas, Recuero-Virto, Laura, Rehdanz, Katrin, and Safa, Alain (2019) Socio-economic tools to mitigate the impacts of ocean acidification on economies and communities reliant on coral reefs — a framework for prioritization. Regional Studies in Marine Science, 28. 100559.

Hays, Graeme C., Bailey, Helen, Bograd, Steven J., Bowen, W. Don, Campagna, Claudio, Carmichael, Ruth H., Casale, Paolo, Chiaradia, André, Costa, Daniel P., Cuevas, Eduardo, de Bruyn, P. J. Nico, Dias, Maria P., Duarte, Carlos M., Dunn, Daniel C., Dutton, Peter H., Esteban, Nicole, Friedlaender, Ari, Goetz, Kimberly T., Godley, Brendan J., Halpin, Patrick N., Hamann, Mark, Hammerschlag, Neil, Harcourt, Robert, Harrison, Autumn-Lynn, Hazen, Elliott L., Heupel, Michelle R., Hoyt, Erich, Humphries, Nicolas E., Kot, Connie Y., Lea, James S. E., Marsh, Helene, Maxwell, Sara M., McMahon, Clive R., di Sciara, Giuseppe Notarbartolo, Palacios, Daniel M., Phillips, Richard A., Righton, David, Schofield, Gail, Seminoff, Jeffrey A., Simpfendorfer, Colin A., Sims, David W., Takahashi, Akinori, Tetley, Michael J., Thums, Michele, Trathan, Philip N., Villegas-Amtmann, Stella, Wells, Randall S., Whiting, Scott D., Wildermann, Natalie E., and Sequeira, Ana M. M. (2019) Translating marine animal tacking data into conservation policy and management. Trends in Ecology and Evolution, 34 (5). pp. 459-473.

Hays, Graeme C., Alcoverro, Teresa, Christianen, Marjolijn J.A., Duarte, Carlos M., Hamann, Mark, Macreadie, Peter I., Marsh, Helene D., Rasheed, Michael A., Thums, Michele, Unsworth, Richard K.F., York, Paul H., and Esteban, Nicole (2018) New tools to identify the location of seagrass meadows: marine grazers as habitat indicators. Frontiers in Marine Science, 5. 9.

Heupel, Michelle R., Kessel, Steven T., Matley, Jordan K., and Simpfendorfer, Colin A. (2018) Acoustic telemetry. In: Carrier, Jeffrey C., Heithaus, Michael R., and Simpfendorfer, Colin A., (eds.) Shark Research: emerging technologies and applications for the field and laboratory. Marine Biology Series . CRC Press, Boca Raton, FL, USA, pp. 133-156.

Hannan, Kelly, and Rummer, Jodie L. (2018) Aquatic acidification: a mechanism underpinning maintained oxygen transport and performance in fish experiencing elevated carbon dioxide conditions. Journal of Experimental Biology, 221. jeb154559.

Hoenner, Xavier, Huveneers, Charlie, Streckenreuter, Andre, Simpfendorfer, Colin, Tattersall, Katherine, Jaine, Fabrice, Atkins, Natalia, Babcock, Russ, Brodie, Stephanie, Burgess, Jonathan, Campbell, Hamish, Heupel, Michelle, Pasquer, Benedicte, Proctor, Roger, Taylor, Matthew D., Udyawer, Vinay, and Harcourt, Robert (2018) Australia's continental-scale acoustic tracking database and its automated quality control process. Scientific Data, 5. 170206.

Harris, R.M.B., Beaumont, L.J., Vance, T.R., Tozer, C.R., Remenyi, T.A., Perkins-Kirkpatrick, S.E., Mitchell, P.J., Nicotra, A.B., McGregor, S., Andrew, N.R., Letnic, M., Kearney, M.R., Wernberg, T., Hutley, L.B., Chambers, L.E., Fletcher, M.-S., Keatley, M.R., Woodward, Clifford, Williamson, G., Duke, N.C., and Bowman, D.M.J.S. (2018) Biological responses to the press and pulse of climate trends and extreme events. Nature Climate Change, 8. pp. 579-587.

Hempson, Tessa N., Graham, Nicholas A.J., MacNeil, M. Aaron, Hoey, Andrew S., and Wilson, Shaun (2018) Ecosystem regime shifts disrupt trophic structure. Ecological Applications, 28 (1). pp. 191-200.

Hein, Margaux Y., Couture, Fanny, and Scott, Chad M. (2018) Ecotourism and coral reef restoration: case studies from Thailand and the Maldives. In: Prideaux, Bruce, and Pabel, Anja, (eds.) Coral Reefs: tourism, conservation and management. Routledge, Abingdon, UK, pp. 137-150.

Head, Catherine E.I., Bonsall, Michael B., Jenkins, Tom L., Koldewey, Heather, Pratchett, Morgan S., Taylor, Michelle L., and Rogers, Alex D. (2018) Exceptional biodiversity of the cryptofaunal decapods in the Chagos Archipelago, central Indian Ocean. Marine Pollution Bulletin, 135. pp. 636-647.

Hoey, Andrew S. (2018) Feeding in Parrotfishes: the influence of species, body size, and temperature. In: Hoey, Andrew S., and Bonaldo, Roberta M., (eds.) Biology of Parrotfishes. Taylor & Francis, Boca Raton, FL, USA, pp. 119-133.

Hughes, Terry P., Kerry, James T., Baird, Andrew H., Connolly, Sean R., Dietzel, Andreas, Eakin, C. Mark, Heron, Scott F., Hoey, Andrew S., Hoogenboom, Mia O., Liu, Gang, McWilliam, Michael J., Pears, Rachel J., Pratchett, Morgan S., Skirving, William J., Stella, Jessica S., and Torda, Gergely (2018) Global warming transforms coral reef assemblages. Nature, 556 (7702). pp. 492-496.

Hempson, Tessa N., Graham, Nicholas A.J., MacNeil, M. Aaron, Hoey, Andrew S., and Almany, Glenn R. (2018) Mesopredator trophodynamics on thermally stressed coral reefs. Coral Reefs, 37 (1). pp. 135-144.

Hoey, Andrew S., Taylor, Brett M., Hoey, Jessica, and Fox, Rebecca J. (2018) Parrotfishes, are we still scraping the surface? Emerging topics and future research directions. In: Hoey, Andrew S., and Bonaldo, Roberta M., (eds.) Biology of Parrotfishes. Taylor & Francis, Boca Raton, FL, USA, pp. 407-416.

Hempson, Tessa N., Graham, Nicholas A.J., MacNeil, M. Aaron, Bodin, Nathalie, and Wilson, Shaun K. (2018) Regime shifts shorten food chains for mesopredators with potential sublethal effects. Functional Ecology, 32 (3). pp. 820-830.

Hernandez-Agreda, Alejandra, Leggat, William, Bongaerts, Pim, Herrera, Cesar, and Ainsworth, Tracy D. (2018) Rethinking the coral microbiome: simplicity exists within a diverse microbial biosphere. mBio, 9 (5).

Hughes, Terry P., Anderson, Kristen D., Connolly, Sean R., Heron, Scott F., Kerry, James T., Lough, Janice M., Baird, Andrew H., Baum, Julia, Berumen, Michael L., Bridge, Tom C., Claar, Danielle C., Eakin, C. Mark, Gilmour, James P., Graham, Nicholas A.J., Harrison, Hugo, Hobbs, Jean-Paul A., Hoey, Andrew S., Hoogenboom, Mia, Lowe, Ryan J., McCulloch, Malcolm T., Pandolfi, John M., Pratchett, Morgan, Schoepf, Verena, Torda, Gergely, and Wilson, Shaun K. (2018) Spatial and temporal patterns of mass bleaching of corals in the Anthropocene. Science, 359 (6371). pp. 80-83.

Howells, Emily J., Dunshea, Glenn, McParland, Dain, Vaughan, Grace O., Heron, Scott F., Pratchett, Morgan S., Burt, John A., and Bauman, Andrew G. (2018) Species-specific coral calcification responses to the extreme environment of the southern Persian Gulf. Frontiers in Marine Science, 5. 56.

Heupel, Michelle, Lédée, Elodie J. I., and Simpfendorfer, Colin A. (2018) Telemetry reveals spatial separation of co-occurring reef sharks. Marine Ecology - Progress Series, 589. pp. 179-192.

Head, Catherine E.I., Koldewey, Heather, Pavoine, Sandrine, Pratchett, Morgan S., Rogers, Alex D., Taylor, Michelle L., and Bonsall, Michael B. (2018) Trait and phylogenetic diversity provide insights into community assembly of reef-associated shrimps (Palaemonidae) at different spatial scales across the Chagos Archipelago. Ecology and Evolution, 8 (8). pp. 4098-4107.

Hoey, Andrew S., Berumen, Michael L., Bonaldo, Roberta M., Burt, John A., Feary, David A., Ferreira, Carlos E.L., Floeter, Sergio R., and Nakamura, Yohei (2018) The ecology of parrotfishes in marginal reef systems. In: Hoey, Andrew S., and Bonaldo, Roberta M., (eds.) Biology of Parrotfishes. Taylor & Francis, Boca Raton, FL, USA, pp. 276-301.

Hoogenboom, Mia, Frank, Grace E., Chase, Tory J., Jurriaans, Saskia, Álvarez-Noriega, Mariana, Peterson, Katie, Critchell, Kay, Berry, Kathryn L.E., Nicolet, Katia J., Ramsby, Blake, and Paley S., Allison (2017) Environmental drivers of variation in bleaching severity of Acropora species during an extreme thermal anomaly. Frontiers in Marine Science, 4. 376.

Hess, Sybille, Prescott, Leteisha J., Hoey, Andrew S., McMahon, Shannon A., Wenger, Amelia S., and Rummer, Jodie L. (2017) Species-specific impacts of suspended sediments on gill structure and function in coral reef fishes. Proceedings of the Royal Society of London Series B, Biological Sciences, 284 (1866). 20171279.

Hughes, Terry P., Barnes, Michele L., Bellwood, David R., Cinner, Joshua E., Cumming, Graeme S., Jackson, Jeremy B.C., Kleypas, Joanie, van de Leemput, Ingrid A., Lough, Janice M., Morrison, Tiffany H., Palumbi, Stephen R., van Nes, Egbert H., and Scheffer, Marten (2017) Coral reefs in the Anthropocene. Nature, 546 (7656). pp. 82-90.

Huveneers, Charlie, Stehfest, Kilian M., Simpfendorfer, Colin A., Semmens, Jayson, Hobday, Alistair J., Pederson, Hugh, Stieglitz, Thomas, Vallee, Richard, Webber, Dale, Heupel, Michelle R., and Harcourt, Robert (2017) Application of the Acoustic Propagation Model to a deep-water cross-shelf curtain. Methods in Ecology and Evolution, 8 (10). pp. 1305-1308.

Hata, Tom, Madin, Joshua S., Cumbo, Vivian R., Denny, Mark, Figueiredo, Joana, Harii, Saki, Thomas, Christopher J., and Baird, Andrew H. (2017) Coral larvae are poor swimmers and require fine-scale reef structure to settle. Scientific Reports, 7 (1). 2249.

Humanes, Adriana, Ricardo, Gerard F., Willis, Bette L., Fabricius, Katharina E., and Negri, Andrew P. (2017) Cumulative effects of suspended sediments, organic nutrients and temperature stress on early life history stages of the coral Acropora tenuis. Scientific Reports, 7. 44101.

Hernandez-Agreda, Alejandra, Gates, Ruth D., and Ainsworth, Tracy D. (2017) Defining the core microbiome in corals' microbial soup. Trends in Microbiology, 25 (2). pp. 125-140.

Humanes Schumann, Adriana, Fink, Artur, Willis, Bette L., Fabricius, Katharina E., de Beer, Dirk, and Negri, Andrew P. (2017) Effects of suspended sediments and nutrient enrichment on juvenile corals. Marine Pollution Bulletin, 125 (1-2). pp. 166-175.

Harrison, Hugo B., Berumen, Michael L., Saenz-Agudelo, Pablo, Salas, Eva, Williamson, David H., and Jones, Geoffrey P. (2017) Widespread hybridization and bidirectional introgression in sympatric species of coral reef fish. Molecular Ecology, 26 (20). pp. 5692-5704.

Hartmann, Aaron C., Baird, Andrew H., Knowlton, Nancy, and Huang, Danwei (2017) The paradox of environmental symbiont acquisition in obligate mutualisms. Current Biology, 27 (23). pp. 3711-3716.

Hodge, Jennifer R., and Bellwood, David R. (2016) The geography of speciation in coral reef fishes: the relative importance of biogeographical barriers in separating sister-species. Journal of Biogeography, 43 (7). pp. 1324-1335.

Hoey, Andrew S., Feary, David A., Burt, John A., Vaughan, Grace, Pratchett, Morgan S., and Berumen, Michael L. (2016) Regional variation in the structure and function of parrotfishes on Arabian reefs. Marine Pollution Bulletin, 105 (2). pp. 524-531.

Humphries, Grant R.W., Flemming, Scott A., Gladics, Amanda J., Hammer, Sjurdur, Hart, Kirk A., Hirata, Kazuhiko, Antolos, Michelle, Kappes, Peter J., Magnusdottir, Ellen, Major, Heather L., McDuie, Fiona, McOmber, Kristina, Orben, Rachael A., Schmid, Moritz S., and Wille, Michelle (2016) Bridging the gap from student to senior scientist: recommendations for engaging early-career scientists in professional biological societies. Marine Ornithology, 44 (2). pp. 157-166.

Heuer, R.M., Welch, M.J., Rummer, J.L., Munday, P.L., and Grosell, M. (2016) Altered brain ion gradients following compensation for elevated CO2 are linked to behavioural alterations in a coral reef fish. Scientific Reports, 6. 33216. pp. 1-10.

Heinrich, Dennis D.U., Watson, Sue-Ann, Rummer, Jodie L., Brandl, Simon J., Simpfendorfer, Colin A., Heupel, Michelle R., and Munday, Philip L. (2016) Foraging behaviour of the epaulette shark Hemiscyllium ocellatum is not affected by elevated CO2. ICES Journal of Marine Science, 73 (3). pp. 633-640.

Hays, Graeme C., Ferreira, Luciana C., Sequeira, Ana M.M., Meekan, Mark G., Duarte, Carlos M., Bailey, Helen, Bailleul, Fred, Bowen, W. Don, Caley, M. Julian, Costa, Daniel P., Eguíluz, Victor M., Fossette, Sabrina, Friedlaender, Ari S., Gales, Nick, Gleiss, Adrian C., Gunn, John, Harcourt, Robert, Hazen, Elliott L., Heithaus, Michael R., Heupel, Michelle, Holland, Kim, Horning, Markus, Jonsen, Ian, Kooyman, Gerald L., Lowe, Christopher G., Madsen, Peter T., Marsh, Helene, Phillips, Richard A., Righton, David, Ropert-Coudert, Yan, Sato, Katsufumi, Shaffer, Scott A., Simpfendorfer, Colin A., Sims, David W., Skomal, Gregory, Takahashi, Akinori, Trathan, Philip N., Wikelski, Martin, Womble, Jamie N., and Thums, Michele (2016) Key Questions in marine megafauna movement ecology. Trends in Ecology & Evolution, 31 (6). pp. 463-475.

Howells, E.J., Willis, B.L., Bay, L.K., and van Oppen, M.J.H. (2016) Microsatellite allele sizes alone are insufficient to delineate species boundaries in Symbiodinium. Molecular Ecology, 25 (12). pp. 2719-2723.

Heenan, Adel, Hoey, Andrew S., Williams, Gareth J., and Williams, Ivor D. (2016) Natural bounds on herbivorous coral reef fishes. Proceedings of the Royal Society of London Series B, Biological Sciences, 283 (1843). 20161716. pp. 1-9.

Hair, Cathy, Mills, David J., McIntyre, Rowan, and Southgate, Paul C. (2016) Optimising methods for community-based sea cucumber ranching: experimental releases of cultured juvenile Holothuria scabra into seagrass meadows in Papua New Guinea. Aquaculture Reports, 3. pp. 198-208.

Hall, April, and Kingsford, Michael (2016) Predators exacerbate competitive interactions and dominance hierarchies between two coral reef fishes. PLoS ONE, 11. e0151778. pp. 1-20.

Hoey, Andrew S., Howells, Emily, Johansen, Jacob L., Hobbs, Jean-Paul A., Messmer, Vanessa, Bradbury, Dominique M., Wilson, Shaun K., and Pratchett, Morgan S. (2016) Recent advances in understanding the effects of climate change on coral reefs. Diversity, 8 (2). 12. pp. 1-22.

Herrera, Marcela, Nanninga, Gerrit B., Planes, Serge, Jones, Geoffrey P., Thorrold, Simon R., Saenz-Agudelo, Pablo, Almany, Glenn R., and Berumen, Michael L. (2016) Seascape and life-history traits do not predict self-recruitment in a coral reef fish. Biology Letters, 12 (8). 20160309. pp. 1-4.

Hall, A.E., and Kingsford, M.J. (2016) Variation in the population demographics of Scolopsis bilineatus in response to predators. Coral Reefs, 35 (4). pp. 1173-1185.

Heron, Scott F., Maynard, Jeffrey A., Van Hooidonk, Ruben, and Eakin, C. Mark (2016) Warming trends and bleaching stress of the world's coral reefs 1985-2012. Scientific Reports, 6. 38402. pp. 1-14.

Huveneers, Charlie, Simpfendorfer, Colin A., Kim, Susan, Semmens, Jayson M., Hobday, Alistair J., Pederson, Hugh, Stieglitz, Thomas, Vallee, Richard, Webber, Dale, Heupel, Michelle R., Peddemors, Vic, and Harcourt, Robert G. (2016) The influence of environmental parameters on the performance and detection range of acoustic receivers. Methods in Ecology and Evolution, 7 (7). pp. 825-835.

Hutchinson, N., and Williams, Gray A. (2003) An assessment of variation in molluscan grazing pressure on Hong Kong rocky shores. Marine Biology, 142. pp. 495-507.

I

Iosilevskii, G., Kong, J.D., Meyer, C.G., Watanabe, Y.Y., Papastamatiou, Y.P., Royer, M.A., Nakamura, I., Sato, K., Doyle, T.K., Harman, L., Houghton, J.D.R., Barnett, A., Semmens, J.M., Maoileidigh, N.O., Drumm, A., O'Neill, R., Coffey, D.M., and Payne, N.L. (2022) A general swimming response in exhausted obligate swimming fish. Royal Society Open Science, 9. 211869.

Illing, Bjorn, Severati, Andrea, Hochen, Justin, Boyd, Paul, Raison, Paulin, Mather, Rachel, Downie, Adam T., Rummer, Jodie L., Kroon, Frederieke J., and Humphrey, Craig (2021) Automated flow control of a multi-lane swimming chamber for small fishes indicates species-specific sensitivity to experimental protocols. Conservation Physiology, 9 (1). coaa131.

Illing, Björn (2020) Cannot see the great white shark? Bait for it. Conservation Physiology, 8 (1). coz114.

Illing, Björn, and Rummer, Jodie L. (2017) Physiology can contribute to better understanding, management, and conservation of coral reef fishes. Conservation Physiology, 5 (1).

J

Johnson, Johanna E., Welch, David J., van Hooidonk, Ruben, Tracey, Dieter, Chandrasa, Ganesha, Molinari, Bianca, Triani, Deti, Tania, Casandra, and Susanto, Handoko (2023) Climate change implications for the Arafura and Timor Seas region: assessing vulnerability of marine systems to inform management and conservation. Climatic Change, 176. 88.

Jones, Nicholas P., Pratchett, Morgan S., Milligan, Rosanna J., and Gilliam, David S. (2023) High incidence of partial colony mortality constrains realized growth for three coral species in southeast Florida. Marine Ecology Progress Series, 721. pp. 59-70.

Jahanbakht, Mohammad, Xiang, Wei, Waltham, Nathan J., and Rahimiazghadi, Mostafa (2022) Distributed Deep Learning in the Cloud and Energy-efficient Real-time Image Processing at the Edge for Fish Segmentation in Underwater Videos Segmentation in Underwater Videos. IEEE Access, 10. pp. 117796-117807.

Jorgensen, Salvador J., Micheli, Fiorenza, White, Timothy D., Van Houtan, Kyle S., Alfaro-Shigueto, Joanna, Andrzejaczek, Samantha, Arnoldi, Natalie S., Baum, Julia K., Block, Barbara, Britten, Gregory L., Butner, Cheryl, Caballero, Susana, Cardenosa, Diego, Chapple, Taylor K., Clarke, Shelley, Cortés, Enric, Dulvy, Nicholas K., Fowler, Sarah, Gallagher, Austin J., Gilman, Eric, Godley, Brendan J., Graham, Rachel T., Hammerschlag, Neil, Harry, Alastair, Heithaus, Michael R., Hutchinson, Melanie, Huveneers, Charlie, Lowe, Chris G., Lucifora, Luis O., MacKeracher, Tracy, Mangel, Jeffrey C., Barbosa Martins, Ana Paula, McCauley, Douglas J., McClenachan, Loren, Mull, Christopher, Natanson, Lisa J., Pauly, Daniel, Pazmiño, Diana A., Pistevos, Jennifer C.A., Queiroz, Nuno, Roff, George, Shea, Brendan D., Simpfendorfer, Colin A., Sims, David W., Ward-Paige, Christine, Worm, Boris, and Ferretti, Francesco (2022) Emergent research and priorities for shark and ray conservation. Endangered Species Research, 47. pp. 171-203.

Juhel, Jean-baptiste, Marques, Virginie, Utama, Rizkie Satriya, Vimono, Indra Bayu, Sugeha, Hagi Yulia, Kadarusman, Kadarusman, Cochet, Christophe, Dejean, Tony, Hoey, Andrew, Mouillot, David, Hocde, Regis, and Pouyaud, Laurent (2022) Estimating the extended and hidden species diversity from environmental DNA in hyper-diverse regions. Ecography, 2022 (10). e06299.

Jones, Nicholas P., Ruzicka, Rob R., Colella, Mike A., Pratchett, Morgan S., and Gilliam, David S. (2022) Frequent disturbances and chronic pressures constrain stony coral recovery on Florida’s Coral Reef. Coral Reefs, 41. pp. 1665-1679.

Jensen, Michael P., Eguchi, Tomoharu, Fitzsimmons, Nancy N., Mccarthy, Michael A., Fuentes, Mariana M.P.B., Hamann, Mark, Limpus, Colin J., Bell, Ian P., and Read, Mark A. (2022) Integrating Climate Change and Management Scenarios in Population Models to Guide the Conservation of Marine Turtles. Bulletin of Marine Science, 98 (2). pp. 131-154.

Jones, Geoffrey P., Srinivasan, Maya, Galbraith, Gemma F., Berumen, Michael L., and Planes, Serge (2022) Saving Nemo: Extinction Risk, Conservation Status, and Effective Management Strategies for Anemonefishes. In: Laudet, Vincent, and Ravasi, Timothy, (eds.) Evolution, Development and Ecology of Anemonefishes. CRC Press, Boca Raton, FL, USA, pp. 285-298.

Jurriaans, Saskia, Hoogenboom, Mia O., and Ferrier-Pages, Christine (2021) Similar thermal breadth of two temperate coral species from the Mediterranean Sea and two tropical coral species from the Great Barrier Reef. Coral Reefs, 40 (4). pp. 1281-1295.

Jackson, Emma L., Smith, Timothy M., York, Paul H., Nielsen, Jesper, Irving, Andrew D., and Sherman, Craig D. H. (2021) An assessment of the seascape genetic structure and hydrodynamic connectivity for sub-tropical seagrass restoration. Restoration Ecology, 29 (1). e13269.

Jarrold, Michael D., Welch, Megan J., McMahon, Shannon J., McArley, Tristan, Allan, Bridie J.M., Watson, Sue-Ann, Parsons, Darren M., Pether, Stephen M.J., Pope, Stephen, Nicol, Simon, Smith, Neville, Herbert, Neill, and Munday, Philip L. (2020) Elevated CO2 affects anxiety but not a range of other behaviours in juvenile yellowtail kingfish. Marine Environmental Research, 157. 104863.

Johnson, Johanna E., Allain, Valerie, Basel, Britt, Bell, Johann D., Chin, Andrew, Dutra, Leo X. C., Hooper, Eryn, Loubser, David, Lough, Janice, Moore, Bradley R., and Nicol, Simon (2020) Impacts of climate change on marine resources in the Pacific Island region. In: Kumar, Lalit, (ed.) Climate Change and Impacts in the Pacific. Springer Climate . Springer, Cham, Switzerland, pp. 359-402.

Jones, G.P., Barone, G., Sambrook, K., and Bonin, M.C. (2020) Isolation promotes abundance and species richness of fishes recruiting to coral reef patches. Marine Biology, 167. 167.

Jinks, Kristin I., Rasheed, Michael A., Brown, Christopher J., Olds, Andrew D., Schlacher, Thomas A., Sheaves, Marcus, York, Paul H., and Connolly, Rod M. (2020) Saltmarsh grass supports fishery food webs in subtropical Australian estuaries. Estuarine, Coastal and Shelf Science, 238. 106719.

Jarrold, Michael D., and Munday, Philip L. (2019) Diel CO₂ cycles and parental effects have similar benefits to growth of a coral reef fish under ocean acidification. Biology Letters, 15 (2). 20180724.

Johnson, Garrett B., Taylor, Brett, Robbins, William D., Franklin, Erik C., Toonen, Rob, Bowen, Brian, and Choat, J. Howard (2019) Diversity and structure of parrotfish assemblages across the northern Great Barrier Reef. Diversity, 11 (1). 14.

Jinks, Kristin I., Brown, Christopher J., Rasheed, Michael A., Scott, Abigail L., Sheaves, Marcus, York, Paul H., and Connolly, Rod M. (2019) Habitat complexity influences the structure of food webs in Great Barrier Reef seagrass meadows. Ecosphere, 10 (11). e02928.

Johnson, Johanna, Betram, Ian, Chin, Andrew, Moore, Bradley, Pratchett, Morgan, Welch, David, Williams, Ashley, Bell, Johann, and Govan, Hugh (2018) Effects of climate change on fish and shellfish relevant to Pacific Islands, and the coastal fisheries they support. Report. Centre for Environment, Fisheries and Aquaculture Science, Suffolk, UK.

Jarrold, Michael D., and Munday, Philip L. (2018) Elevated temperature does not substantially modify the interactive effects between elevated CO2 and diel CO2 cycles on the survival, growth and behavior of a coral reef fish. Frontiers in Marine Science, 5. 458.

Jain-Schlaepfer, Sofia, Fakan, Eric, Rummer, Jodie L., Simpson, Stephen D., and McCormick, Mark I. (2018) Impact of motorboats on fish embryos depends on engine type. Conservation Physiology, 6 (1).

Jog, Ketki, Sule, Mihir, Bopardikar, Isha, Patankar, Vardhan, and Sutaria, Dipani (2018) Living with dolphins: local ecological knowledge and perceptions of small cetaceans along the Sindhudurg coastline of Maharashtra, India. Marine Mammal Science, 34 (2). pp. 488-498.

Johns, Kerryn A., Emslie, Michael J., Hoey, Andrew S., Osborne, Kate, Jonker, Michelle J., and Cheal, Alistair J. (2018) Macroalgal feedbacks and substrate properties maintain a coral reef regime shift. Ecosphere, 9 (7). e02349.

Juhel, Jean-Baptiste, Vigliola, Laurent, Mouillot, David, Kulbicki, Michel, Letessier, Tom B., Meeuwig, Jessica J., and Wantiez, Laurent (2018) Reef accessibility impairs the protection of sharks. Journal of Applied Ecology, 55 (2). pp. 673-683.

Jabado, Rima W., Kyne, Peter M., Pollom, Riley A., Ebert, David A., Simpfendorfer, Colin A., Ralph, Gina M., Al Dhaheri, Shaikha S., Akhilesh, K.V., Ali, Khadeeja, Ali, Mohamud Hassan, Al Mamari, Tariq M.S., Bineesh, K.K., El Hassan, Igbal S., Fernando, Daniel, Grandcourt, Edwin M., Khan, Muhammad Moazzam, Moore, Alec B.M., Owfi, Fereidoon, Robinson, David P., Romanov, Evgeny, Soares, Ana-Lucia, Spaet, Julia L.Y., Tesfamichael, Dawit, Valinassab, Tooraj, and Dulvy, Nicholas K. (2018) Troubled waters: threats and extinction risk of the sharks, rays and chimaeras of the Arabian Sea and adjacent waters. Fish and Fisheries, 19 (6). pp. 1043-1062.

Jarrold, Michael D., Humphrey, Craig, McCormick, Mark I., and Munday, Philip L. (2017) Diel CO2 cycles reduce severity of bahavioural abnormalities in coral reef fish under ocean acidification. Scientific Reports, 7.

Januchowski-Hartley, Fraser, Graham, Nicholas A.J., Wilson, Shaun K., Jennings, Simon, and Perry, Chris T. (2017) Drivers and predictions of coral reef carbonate budget trajectories. Proceedings of the Royal Society of London Series B, Biological Sciences, 284 (1847). 20162533.

Johansen, Jacob, Allan, Bridie J.M., Rummer, Jodie L., and Esbaugh, Andrew J. (2017) Oil exposure disrupts early life-history stages of coral reef fishes via behavioural impairments. Nature Ecology & Evolution, 1. pp. 1146-1152.

Johnson, J.A., Perry, C.T., Smithers, S.G., Morgan, K.M., Santodomingo, N., and Johnson, K.G. (2017) Palaeoecological records of coral community development on a turbid, nearshore reef complex: baselines for assessing ecological change. Coral Reefs, 36 (3). pp. 685-700.

Jensen, Sigmund, V. Fortunato, Sofia A., Hoffman, Friederike, Hoem, Solveig, Tore Rapp, Hans, Øvreås, Lise, and Torsvik, Vigdis L. (2017) The relative abundance and transcriptional activity of marine sponge-associated microorganisms emphasizing groups involved in sulfur cycle. Microbial Ecology, 73 (3). pp. 668-676.

Jin, Young K,, Lundgren, Petra, Lutz, Adrian, Raina, Jean-Baptiste, Howells, Emily J., Paley, Allison S., Willis, Bette L., and Van Oppen, Madeleine J.H. (2016) Genetic markers for antioxidant capacity in a reef-building coral. Science Advances, 2. e1500842. pp. 1-7.

Jensen, Michael P., Bell, Ian, Limpus, Colin J., Hamann, Mark, Ambar, Stephen, Whap, Terrence, David, Charles, and FitzSimmons, Nancy N. (2016) Spatial and temporal genetic variation among size classes of green turtles (Chelonia mydas) provides information on oceanic dispersal and population dynamics. Marine Ecology Progress Series, 543. pp. 241-256.

K

Kanno, Shiori (2023) Life history and spatial ecology of sharks and rays in mangrove habitats. PhD thesis, James Cook University.

Kanno, Shiori, Heupel, Michelle R., Sheaves, Marcus J., and Simpfendorfer, Colin A. (2023) Mangrove use by sharks and rays: A review. Marine Ecology Progress Series, 724. pp. 167-183.

Kaposi, Katrina L., Mitchell, Michela L., Courtney, Robert L., and Seymour, Jamie E. (2023) Variability of cnidae within a small clonal sea anemone (Isactinia sp.). Invertebrate Biology, 142 (4). e12413.

Kroon, Frederieke J., Crosswell, Joseph R., and Robson, Barbara J. (2023) The effect of catchment load reductions on water quality in the crown-of-thorn starfish outbreak initiation zone. Marine Pollution Bulletin, 195. 115255.

Kaposi, K.L., Courtney, R.L., and Seymour, J.E. (2023) A note on the sexual reproductive biology of Ricordea yuma (Corallimorpharia). Coral Reefs, 42 (3). pp. 755-760.

Kuo, Chao-Yang, Pratchett, Morgan S., Madin, Joshua S., and Baird, Andrew H. (2023) A test of adaptive strategy theory using fifteen years of change in coral abundance. Coral Reefs, 42 (4). pp. 951-966.

Kuo, Chao Yang, Tsai, Cheng-Han, Huang, Ya Yi, Heng, Wei Khang, Hsiao, An Tzi, Hsieh, Hernyi Justin, and Chen, Chaolun Allen (2022) Fine intervals are required when using point intercept transects to assess coral reef status. Frontiers in Marine Science, 9. 795512.

Kaposi, K.L., Courtney, R.L., and Seymour, J.E. (2022) Implications of bleaching on cnidarian venom ecology. Toxicon: X, 13. 100094.

Kavazos, Christopher R.J., Ricci, Francesco, Leggat, William, Casey, Jordan, Choat, J. Howard, and Ainsworth, Tracy D. (2022) Intestinal Microbiome Richness of Coral Reef Damselfishes (Actinopterygii: Pomacentridae). Integrative Organismal Biology, 4 (1). obac026.

Karkarey, Rucha, Arthur, Rohan, Nash, Kirsty L., Pratchett, Morgan S., Sankaran, Mahesh, and Graham, Nicholas A.J. (2022) Spatial decoupling of α and β diversity suggest different management needs for coral reef fish along an extensive mid-oceanic ridge. Global Ecology and Conservation, 36. e02110.

Kingsford, Michael J., Krunes, Emily A., and Hall, April E. (2022) Testing the critical size at settlement hypothesis for two species of coral reef fish. Marine Ecology Progress Series, 681. pp. 87-101.

Kingsford, M.J., and Cole, R.G. (2022) Vertical distribution patterns of ichthyoplankton in temperate waters of New Zealand. Marine and Freshwater Research, 73 (4). pp. 503-519.

Keith, David A., Ferrer-Paris, Jose R., Nicholson, Emily, Bishop, Melanie J., Polidoro, Beth A., Ramirez-Llodra, Eva, Tozer, Mark G., Nel, Jeanne L., Mac Nally, Ralph, Gregr, Edward J., Watermeyer, Kate E., Essl, Franz, Faber-Langendoen, Don, Franklin, Janet, Lehmann, Caroline E.R., Etter, Andres, Roux, Dirk J., Stark, Jonathan S., Rowland, Jessica A., Brummitt, Neil A., Fernandez-Arcaya, Ulla C., Suthers, Iain M., Wiser, Susan K., Donohue, Ian, Jackson, Leland J., Pennington, R. Toby, Iliffe, Thomas M., Gerovasileiou, Vasilis, Giller, Paul, Robson, Belinda J., Pettorelli, Nathalie, Andrade, Angela, Lindgaard, Arild, Tahvanainen, Teemu, Terauds, Aleks, Chadwick, Michael A., Murray, Nicholas J., Moat, Justin, Pliscoff, Patricio, Zager, Irene, and Kingsford, Richard T. (2022) A function-based typology for Earth’s ecosystems. Nature, 610 (7932). pp. 513-518.

Kuek, Felicity W.I. (2021) Dimethylsulphoniopropionate (DMSP) metabolism within the coral holobiont. PhD thesis, James Cook University.

Kraemer, Philipp, Gerlach, Gabriele, and Brinkhoff, Thorsten (2020) Diversity and flexibility of the bacterial communities on Cancer pagurus at different temperatures. Journal of Sea Research, 156. 101827.

Kishimoto, Mariko, Baird, Andrew H., Maruyama, Shinichiro, Minagawa, Jun, and Takahashi, Shunichi (2020) Loss of symbiont infectivity following thermal stress can be a factor limiting recovery from bleaching in cnidarians. ISME Journal: multidisciplinary journal of microbial ecology, 14. pp. 3149-3152.

Komyakova, V., Munday, P.L., and Jones, G.P. (2019) Comparative analysis of habitat use and ontogenetic habitat-shifts among coral reef damselfishes. Environmental Biology of Fishes, 102 (9). pp. 1201-1218.

Kingsford, Michael J., Welch, David, and O'Callaghan, Mark (2019) Latitudinal and cross-shelf patterns of size, age, growth, and mortality of a tropical damselfish Acanthochromis polyacanthus on the Great Barrier Reef. Diversity, 11 (5). 67.

Kingsford, M. J., and Mckinnon, A. D. (2019) Plankton. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) Great Barrier Reef: Biology, Environment and Management. CSIRO Publishing, Clayton South, VIC, Australia, pp. 191-206.

Kim, Sun W., Sampayo, Eugenia M., Sommer, Brigitte, Sims, Carrie A., Gómez‐Cabrera, Maria del C., Dalton, Steve J., Beger, Maria, Malcolm, Hamish A., Ferrari, Renata, Fraser, Nicola, Figueira, Will F., Smith, Stephen D.A., Heron, Scott F., Baird, Andrew H., Byrne, Maria, Eakin, C. Mark, Edgar, Robert, Hughes, Terry P., Kyriacou, Nicole, Liu, Gang, Matis, Paloma A., Skirving, William J., and Pandolfi, John M. (2019) Refugia under threat: mass bleaching of coral assemblages in high-latitude eastern Australia. Global Change Biology, 25 (11). pp. 3918-3931.

Knudsen, Steen Wilhelm, Choat, J. Howard, and Clements, Kendall D. (2019) The herbivorous fish family Kyphosidae (Teleostei: Perciformes) represents a recent radiation from higher latitudes. Journal of Biogeography, 46 (9). pp. 2067-2080.

Komyakova, Valeriya, Jones, Geoffrey P., and Munday, Philip L. (2018) Strong effects of coral species on the diversity and structure of reef fish communities: a multi-scale analysis. PLoS ONE, 13 (8). e0202206.

Keith, Sally A., Baird, Andrew H., Hobbs, Jean-Paul A., Woolsey, Erika S., Hoey, Andrew S., Fadli, N., and Sanders, Nathan J. (2018) Synchronous behavioural shifts in reef fishes linked to mass coral bleaching. Nature Climate Change, 8 (11). pp. 986-991.

Konow, Nicolai, Price, Samantha, Abom, Richard, Bellwood, David, and Wainwright, Peter (2017) Decoupled diversification dynamics of feeding morphology following a major functional innovation in marine butterflyfishes. Proceedings Of The Royal Society B-biological Sciences, 284 (1860).

Kendrick, Gary A., Orth, Robert, Statton, John, Hovey, Renae, Montoya, Leonardo Ruiz, Lowe, Ryan J., Krauss, Siegfried L., and Sinclair, Elizabeth A. (2017) Demographic and genetic connectivity: the role and consequences of reproduction, dispersal and recruitment in seagrasses. Biological Reviews, 92 (2). pp. 921-938.

Kerry, James T., and Bellwood, David R. (2017) Environmental drivers of sheltering behaviour in large reef fishes. Marine Pollution Bulletin, 125 (1-2). pp. 254-259.

Kennington, W. Jason, Keron, Peter W., Harvey, Euan S., Wakefield, Corey B., Williams, Ashley J., Halafihi, Tuikolongahau, and Newman, Stephen J. (2017) High intra-ocean, but limited inter-ocean genetic connectivity in populations of the deep-water oblique-banded snapper Pristipomoides zonatus (Pisces: Lutjanidae). Fisheries Research, 193. pp. 242-249.

Khan, Joanna A., Goatley, Christopher H.R., Brandl, Simon J., Tebbett, Sterling B., and Bellwood, David R. (2017) Shelter use by large reef fishes: long-term occupancy and the impacts of disturbance. Coral Reefs, 36 (4). pp. 1123-1132.

Keshavmurthy, Shashank, Tang, Kuo-Hsun, Hsu, Chia-Min, Gan, Chai-Hsia, Kuo, Chao-Yang, Soong, Keryea, Chou, Hong-Nong, and Chen, Chaolun Allen (2017) Symbiodinium spp. associated with scleractinian corals from Dongsha Atoll (Pratas), Taiwan, in the South China Seal. PeerJ, 5. e2871.

Keith, Sally A., Maynard, Jeffrey A., Edwards, Alasdair J., Guest, James R., Bauman, Andrew G., Van Hooidonk, Ruben, Heron, Scott F., Berumen, Michael L., Bouwmeester, Jessica, Piromvaragorn, Srisakul, Rahbek, Carsten, and Baird, Andrew H. (2016) Coral mass spawning predicted by rapid seasonal rise in ocean temperature. Proceedings of the Royal Society of London Series B, Biological Sciences, 283 (1830). pp. 1-9.

Kramer, M.J., Bellwood, O., and Bellwood, D.R. (2016) Foraging and microhabitat use by crustacean-feeding wrasses on coral reefs. Marine Ecology Progress Series, 548. pp. 277-282.

Kerry, J.T., and Bellwood, D.R. (2016) Competition for shelter in a high-diversity system: structure use by large reef fishes. Coral Reefs, 35 (1). pp. 245-252.

Khan, J.A., Welsh, J.Q., and Bellwood, D.R. (2016) Using passive acoustic telemetry to infer mortality events in adult herbivorous coral reef fishes. Coral Reefs, 35 (2). pp. 411-420.

L

Lutzenkirchen, Lucas L., Duce, Stephanie J., and Bellwood, David R. (2024) Exploring benthic habitat assessments on coral reefs: a comparison of direct field measurements versus remote sensing. Coral Reefs, 43. pp. 265-280.

Lutzenkirchen, Lucas Leo (2024) Upscaling ecosystem studies on coral reefs. Masters (Research) thesis, James Cook University.

Losciale, Riccardo, Day, Jon C., Rasheed, Michael A., and Heron, Scott F. (2024) The vulnerability of World Heritage seagrass habitats to climate change. Global Change Biology, 30 (1). e17113.

Lubitz, Nicolas, Daly, Ryan, Filmalter, John D., Sheaves, Marcus, Cowley, Paul D., Naesje, Tor F., and Barnett, Adam (2023) Context drives movement patterns in a mobile marine predator. Movement Ecology, 11. 28.

Lubitz, Nicolas (2023) Context-dependent movement behaviour in marine predators: the causes and consequences of behavioural variability. PhD thesis, James Cook University.

Lang, Bethan J., Donelson, Jennifer M., Bairos-Novak, Kevin R., Wheeler, Carolyn R., Caballes, Ciemon F., Uthicke, Sven, and Pratchett, Morgan S. (2023) Impacts of ocean warming on echinoderms: A meta‐analysis. Ecology and Evolution, 13 (8). e10307.

Lang, Bethan Jade (2023) Impacts of ocean warming on the Pacific crown-of-thorns starfish (Acanthaster cf.solaris). PhD thesis, James Cook University.

Lang, Bethan J., Caballes, Ciemon F., Uthicke, Sven, Doll, Peter C., Donelson, Jennifer M., and Pratchett, Morgan S. (2023) Impacts of ocean warming on the settlement success and post‐settlement survival of Pacific crown‐of‐thorns starfish (Acanthaster cf. solaris). Coral Reefs, 42. pp. 143-155.

Lubitz, Nicolas, and Barnett, Adam (2023) Possible range extension in the endangered and understudied winghead shark (Eusphyra blochii). Journal of Fish Biology, 102 (3). pp. 718-720.

Lennox-Bulow, Danica, Smout, Michael, Loukas, Alex, and Seymour, Jamie (2023) Stonefish (Synanceia spp.) Ichthyocrinotoxins: An ecological review and prospectus for future research and biodiscovery. Toxicon, 236. 107329.

Lukman, Kevin Muhamad, Rifai, Husen, McKenzie, Len, Risandi, Johan, Hernawan, Udhi Eko, Sjafrie, Nurul Dhewani M., Rahmadi, Puji, Triyono, Suryawati, Siti Hajar, Uchiyama, Yuta, Fortes, Miguel D., Yulianda, Fredinan, Kurniawan, Fery, Hidayat, Rahman, and Suraji, S. (2023) Strategies to Develop Sustainable Seagrass-Associated Tourism in Indonesia. Coastal Management, 51 (5-6). pp. 308-318.

Lubitz, Nicolas, Abrantes, Kátya, Crook, Kevin, Currey-Randall, Leanne M., Chin, Andrew, Sheaves, Marcus, Fitzpatrick, Richard, Barbosa Martins, Ana, Bierwagen, Stacy, Miller, Ingo B., and Barnett, Adam (2023) Trophic ecology shapes spatial ecology of two sympatric predators, the great hammerhead shark (Sphyrna mokarran) and bull shark (Carcharhinus leucas). Frontiers in Marine Science, 10. 1274275.

Li, Jie, Zou, Yiyang, Li, Qiqi, Zhang, Jian, Bourne, David G., Lyu, Yuanjiao, Liu, Cong, and Zhang, Si (2023) A coral-associated actinobacterium mitigates coral bleaching under heat stress. Environmental Microbiome, 18 (1). 83.

Lutzenkirchen, Lucas L., Duce, Stephanie J., and Bellwood, David R. (2023) The global biogeography of reef morphology. Global Ecology and Biogeography, 32 (8). pp. 1353-1364.

Losciale, Riccardo, Day, Jon, and Heron, Scott (2022) Conservation status, research, and knowledge of seagrass habitats in World Heritage properties. Conservation Science and Practice, 4 (12). e12830.

Little, Christine M., Liu, Gang, De La Cour, Jacqueline L., Eakin, C. Mark, Manzello, Derek, and Heron, Scott F. (2022) Global coral bleaching event detection from satellite monitoring of extreme heat stress. Frontiers in Marine Science, 9. 883271.

Lowe, J.R., Russ, G.R., Bucol, A.A., Abesamis, R.A., Stockwell, B.L., and Choat, J.H. (2022) Patterns of biogeographic and regional life-history trait variation in four large-bodied tropical wrasses. Marine Biology, 169 (9). 113.

Lambert, Victoria, Bainbridge, Zoe T., Collier, Catherine, Lewis, Stephen E., Adams, Matthew P., Carter, Alex, Saunders, Megan I., Brodie, Jon, Turner, Ryan D.R., Rasheed, Michael A., and O'Brien, Katherine R. (2021) Connecting targets for catchment sediment loads to ecological outcomes for seagrass using multiple lines of evidence. Marine Pollution Bulletin, 169. 112494.

Lang, Bethan J., Donelson, Jennifer M., Caballes, Ciemon F., Doll, Peter C., and Pratchett, Morgan S. (2021) Metabolic responses of Pacific Crown-of-Thorns sea stars (Acanthaster sp.) to acute warming. Biological Bulletin, 241 (3).

LaMonica, Lauren E., Fox, Rebecca J., and Donelson, Jennifer M. (2021) Thermal sensitivity of juvenile rabbitfishes Siganus doliatus and S. lineatus (Siganidae): a key role for habitat? Coral Reefs, 40. pp. 1307-1320.

Laubenstein, Taryn D., Jarrold, Michael D., Rummer, Jodie L., and Munday, Philip L. (2020) Beneficial effects of diel CO₂ cycles on reef fish metabolic performance are diminished under elevated temperature. Science of the Total Environment, 735. 139084.

Lintermans, Mark, Geyle, Hayley M., Beatty, Stephen, Brown, Culum, Ebner, Brendan C., Freeman, Rob, Hammer, Michael P., Humphreys, William F., Kennard, Mark J., Kern, Pippa, Martin, Keith, Morgan, David L., Raadik, Tarmo A., Unmack, Peter J., Wager, Rob, Woinarski, John C.Z., and Garnett, Stephen T. (2020) Big trouble for little fish: identifying Australian freshwater fishes in imminent risk of extinction. Pacific Conservation Biology, 26 (4). pp. 365-377.

Lowe, J. R., Williamson, D. H., Ceccarelli, D. M., Evans, R. D., and Russ, G. R. (2020) Environmental disturbance events drive declines in juvenile wrasse biomass on inshore coral reefs of the Great Barrier Reef. Environmental Biology of Fishes, 103. pp. 1279-1293.

Luter, Heidi M., Kenkel, Carly D., Terzin, Marko, Peirce, Tyler, Laffy, Patrick W., Gibb, Karen, and Webster, Nicole S. (2020) Gene correlation networks reveal the transcriptomic response to elevated nitrogen in a photosynthetic sponge. Molecular Ecology, 29 (8). pp. 1452-1462.

Ling, S.D., Cowan, Z.-L., Boada, J., Flukes, E.B., and Pratchett, M.S. (2020) Homing behaviour by destructive crown-of-thorns starfish is triggered by local availability of coral prey. Proceedings of the Royal Society of London Series B, Biological Sciences, 287 (1938).

Liss, Katharina C.M., Lopez, Laura K., Donelson, Jennifer M., and Wong, Marian Y.L. (2020) Predator-prey interactions and metabolic rates are altered in stable and unstable groups in a social fish. Oikos, 129 (6). pp. 842-852.

Leonard, Nicole D., Lepore, Mauro L., Zhao, Jian-xin, Rodriguez-Ramirez, Alberto, Butler, Ian R., Clark, Tara R., Roff, George, McCook, Laurence, Nguyen, Ai D., Feng, Yuexing, and Pandolfi, John M. (2020) Re-evaluating mid-Holocene reef "turn-off" on the inshore Southern Great Barrier Reef. Quaternary Science Reviews, 244. 106518.

Lowe, Jake R. (2020) Relative effects of environmental variation and fishing on the demography and ecology of tropical wrasses. PhD thesis, James Cook University.

Lau, Sally C.Y., Thomas, Marine, Hancock, Boze, and Russell, Bayden D. (2020) Restoration potential of Asian oysters on heavily developed coastlines. Restoration Ecology, 28 (6). pp. 1643-1653.

Langlois, Tim, Goetze, Jordan, Bond, Todd, Monk, Jacquomo, Abesamis, Rene A., Asher, Jacob, Barrett, Neville, Bernard, Anthony T. F., Bouchet, Phil J., Birt, Matthew J., Cappo, Mike, Currey-Randall, Leanne M., Driessen, Damon, Fairclough, David V., Fullwood, Laura A.F., Gibbons, Brooke A., Harasti, David, Heupel, Michelle R., Hicks, Jamie, Holmes, Thomas H., Huveneers, Charlie, Ierodiaconou, Daniel, Jordan, Alan, Knott, Nathan A., Lindfield, Steve, Malcolm, Hamish A., McLean, Dianne, Meekan, Mark, Miller, David, Mitchell, Peter J., Newman, Stephen J., Radford, Ben, Rolim, Fernanda A., Saunders, Benjamin J., Stowar, Marcus, Smith, Adam N.H., Travers, Michael J., Wakefield, Corey B., Whitmarsh, Sasha K., Williams, Joel, and Harvey, Euan S. (2020) A field and video annotation guide for baited remote underwater stereo-video surveys of demersal fish assemblages. Methods in Ecology and Evolution, 11 (11). pp. 1401-1409.

Lindsay, Dhugal J., Hunt, James C., McNeil, Mardi, Beaman, Robin J., and Vecchione, Michael (2020) The first in situ observation of the ram's horn squid Spirula spirula turns "common knowledge" upside down. Diversity, 12 (12). 449.

Lester, Emily K., Langlois, Tim J., Simpson, Stephen D., McCormick, Mark I., and Meekan, Mark G. (2020) The hemisphere of fear: the presence of sharks influences the three dimensional behaviour of large mesopredators in a coral reef ecosystem. Oikos, 129 (5). pp. 731-739.

Linssen, Hans, van de Pol, Martijn, Allen, Andrew, Jans, Mitzi, Ens, Bruno J., Krijgsveld, Karen, Frauendorf, Magali, and Van Der Kolk, Henk-Jan (2019) Disturbance increases high tide travel distance of a roosting shorebird but only marginally affects daily energy expenditure. Avian Research, 10. 31.

Lee, Jeong-Hyun, Dattilo, Benjamin F., Mrozek, Stephanie, Miller, James F., and Riding, Robert (2019) Lithistid sponge-microbial reefs, Nevada, USA: filling the late Cambrian 'reef gap'. Palaeogeography, Palaeoclimatology, Palaeoecology, 520. pp. 251-262.

Loffler, Zoe, and Hoey, Andrew S. (2019) Microtopographic refuges enhance recruitment and survival, but inhibit growth of propagules of the tropical macroalga Sargassum swartzii. Marine Ecology Progress Series. pp. 61-70.

Lear, Karissa O., Gleiss, Adrian C., Whitty, Jeff M., Fazeldean, Travis, Albert, J.R., Green, Nathan, Ebner, Brendan C., Thorburn, Dean C., Beatty, Stephen J., and Morgan, David L. (2019) Recruitment of a critically endangered sawfish into a riverine nursery depends on natural flow regimes. Scientific Reports, 9. 17071.

Lin, Mei-Fang, Takahashi, Shunichi, Foret, Sylvain, Davy, Simon K., and Miller, David J. (2019) Transcriptomic analyses highlight the likely metabolic consequences of colonization of a cnidarian host by native or non-native Symbiodinium species. Biology Open, 8 (3). bio038281.

Li, Yan, Randall, Carly J., van Woesik, Robert, and Ribeiro, Eraldo (2019) Underwater video mosaicing using topology and superpixel-based pairwise stitching. Expert Systems with Applications, 119. pp. 171-183.

Lei, Xinming, Huang, Hui, Lian, Jiansheng, and McCook, Laurence (2019) 中国珊瑚藻的多样性及分布研究现状 / The diversity and distribution of coralline algae in China: state of knowledge and research. Redai Haiyang Xuebao, 38 (4). pp. 30-40.

Loffler, Zoe, and Hoey, Andrew S. (2018) Canopy-forming macroalgal beds (Sargassum) on coral reefs are resilient to physical disturbance. Journal of Ecology, 106 (3). pp. 1156-1164.

Laubenstein, Taryn D., Rummer, Jodie L., Nicol, Simon, Parsons, Darren M., Pether, Stephen M.J., Pope, Stephen, Smith, Neville, and Munday, Philip L. (2018) Correlated Effects of Ocean Acidification and Warming on Behavioral and Metabolic Traits of a Large Pelagic Fish. Diversity, 10 (2). 35.

Le Port, Agnes, Bakker, Judith, Cooper, Madalyn K., Huerlimann, Roger, and Mariani, Stefano (2018) Environmental DNA (eDNA): a valuable tool for ecological inference and management of sharks and their relatives. In: Carrier, Jeffrey C., Heithaus, Michael R., and Simpfendorfer, Colin A., (eds.) Shark Research: emerging technologies and applications for the field and laboratory. Marine Biology Series . CRC Press, Boca Raton, FL, USA, pp. 255-283.

Lewbart, Gregory A., Cohen, Eli B., Hirschfeld, Maximilian, Muñoz-Pérez, Juan Pablo, García, Juan, Fu, Andy, Chen, Emile P., and Lohmann, Kenneth J. (2018) Field-based radiographic imaging of marine megafauna: marine iguanas (Amblyrhynchus cristatus) as a case study. Frontiers in Marine Science, 5. 40.

Loffler, Zoe, Graba-Landry, Alexia, Kidgell, Joel T., McClure, Eva C., Pratchett, Morgan S., and Hoey, Andrew S. (2018) Holdfasts of Sargassum swartzii are resistant to herbivory and resilient to damage. Coral Reefs, 37 (4). pp. 1075-1084.

Lukoschek, Vimoksalehi (2018) Population declines, genetic bottlenecks and potential hybridization in sea snakes on Australia's Timor Sea reefs. Biological Conservation, 225. pp. 66-79.

Lau, Sally C.Y., Brettell, Dominic L.D.F., and Astudillo, Juan C. (2018) Rapid assessment of the invasive Xenostrobus securis on cultured oysters in Hong Kong. Regional Studies in Marine Science, 17. pp. 11-16.

Laffy, Patrick W., Wood-Charlson, Elisha M., Turaev, Dmitrij, Jutz, Sabrina, Pascelli, Cecilia, Botté, Emmanuelle S., Bell, Sara C., Peirce, Tyler E., Weynberg, Karen D., van Oppen, Madeleine J.H., Rattei, Thomas, and Webster, Nicole S. (2018) Reef invertebrate viromics: diversity, host specificity and functional capacity. Environmental Microbiology, 20 (6). pp. 2125-2141.

Laverick, Jack H., Piango, Shanice, Andradi-Brown, Dominic A., Exton, Dan A., Bongaerts, Pim, Bridge, Tom C.L., Lesser, Michael P., Pyle, Richard L., Slattery, Marc, Wagner, Daniel, and Rogers, Alex D. (2018) To what extent do mesophotic coral ecosystems and shallow reefs share species of conservation interest? A systematic review. Environmental Evidence, 7 (15).

Litvin, Steven Y., Weinstein, Michael P., Sheaves, Marcus, and Nagelkerken, Ivan (2018) What makes nearshore habitats nurseries for nekton? An emerging view of the nursery role hypothesis. Estuaries and Coasts, 41 (6). pp. 1539-1550.

Lau, Sally C.Y., Grange, Laura J., Peck, Lloyd S., and Reed, Adam J. (2018) The reproductive ecology of the Antarctic bivalve Aequiyoldia eightsii (Protobranchia: Sareptidae) follows neither Antarctic nor taxonomic patterns. Polar Biology, 41. pp. 1693-1706.

Lohr, Cheryl, Wenger, Amelia, Woodberry, Owen, Pressey, Robert L., and Morris, Keith (2017) Predicting island biosecurity risk from introduced fauna using Bayesian Belief Networks. Science of the Total Environment, 601-602. pp. 1173-1181.

Lai, Floriana, Fagernes, Cathrine E., Bernier, Nicholas J., Miller, Gabrielle M., Munday, Philip L., Jutfelt, Fredrik, and Nilsson, Goran E. (2017) Responses of neurogenesis and neuroplasticity related genes to elevated CO2 levels in the brain of three teleost species. Biology Letters, 13 (8).

Lawson, Julia M., Fordham, Sonja V., O'Malley, Mary P., Davidson, Lindsay N.K., Walls, Rachel H.L., Heupel, Michelle, Stevens, Guy, Fernando, Daniel, Budziak, Ania, Simpfendorfer, Colin A., Ender, Anna Isabel, Francis, Malcolm P., di Sciara, Giuseppe Notarbartolo, and Dulvy, Nicholas K. (2017) Sympathy for the devil: a conservation strategy for devil and manta rays. PeerJ, 5. e3027. pp. 1-30.

Le Port, A., Montgomery, J.C., Smith, A.N.H., Croucher, A.E., McLeod, I.M., and Lavery, S.D. (2017) Temperate marine protected area provides recruitment subsidies to local fisheries. Proceedings of the Royal Society of London Series B, Biological Sciences, 284 (1865). 20171300.

Lienart, Govinda D.H., Ferrari, Maud C.O., and McCormick, Mark I. (2016) Thermal environment and nutritional condition affect the efficacy of chemical alarm cues produced by prey fish. Environmental Biology of Fishes, 99 (10). pp. 729-739.

Lefèvre, Carine D., Nash, Kirsty L., González-Cabello, Alonso, and Bellwood, David R. (2016) Consequences of extreme life history traits on population persistence: do short-lived gobies face demographic bottlenecks? Coral Reefs, 35 (2). pp. 399-409.

Lopes, A.F., Morais, P., Pimentel, M., Rosa, R., Munday, P.L., Gonçalves, E.J., and Faria, A.M. (2016) Behavioural lateralization and shoaling cohesion of fish larvae altered under ocean acidification. Marine Biology, 163 (12). 243. pp. 1-10.

Lema, Kimberley A., Clode, Peta L., Kilburn, Matt R., Thornton, Ruth, Willis, Bette L., and Bourne, David G. (2016) Imaging the uptake of nitrogen-fixing bacteria into larvae of the coral Acropora millepora. ISME Journal, 10 (7). pp. 1804-1808.

Last, K.S., Hendrick, V.J., Beveridge, C.M., Roberts, D.A., and Wilding, T.A. (2016) Lethal and sub-lethal responses of the biogenic reef forming polychaete Sabellaria alveolata to aqueous chlorine and temperature. Marine Environmental Research, 117. pp. 44-53.

Lerebours, Adélaïde, Chapman, Emma C., Sweet, Michael J., Heupel, Michelle R., and Rotchell, Jeanette M. (2016) Molecular changes in skin pigmented lesions of the coral trout Plectropomus leopardus. Marine Environmental Research, 120. pp. 130-135.

Leprieur, Fabien, Descombes, Patrice, Gaboriau, Théo, Cowman, Peter F., Parravicini, Valeriano, Kulbicki, Michel, Melián, Carlos J., de Santana, Charles N., Heine, Christian, Mouillot, David, Bellwood, David R., and Pellissier, Loïc (2016) Plate tectonics drive tropical reef biodiversity dynamics. Nature Communications, 7. 11461. pp. 1-8.

Leahy, Susannah M., Russ, Garry R., and Abesamis, Rene A. (2016) Primacy of bottom-up effects on a butterflyfish assemblage. Marine and Freshwater Research, 67 (8). pp. 1175-1185.

Laverick, Jack H., Andradi-Brown, Dominic A., Exton, Dan A., Bongaerts, Pim, Bridge, Tom C.L., Lesser, Michael P., Pyle, Richard L., Slattery, Marc, Wagner, Daniel, and Rogers, Alex D. (2016) To what extent do mesophotic coral ecosystems and shallow reefs share species of conservation interest? Environmental Evidence, 5 (16). pp. 1-8.

M

McKenna, S.A., Concannon, T.G., Van de Wetering, C., and Rasheed, M.A. (2024) Bowen - McCanes Bay / Port Dennison Seagrass Assessments June 2024. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Morris, Rebecca L., Campbell-Hooper, Erin, Waters, Elissa, Bishop, Melanie J., Lovelock, Catherine E., Lowe, Ryan J., Strain, Elizabeth M.A., Boon, Paul, Boxshall, Anthony, Browne, Nicola K., Carley, James T., Fest, Benedikt J., Fraser, Matthew W., Ghisalberti, Marco, Gillanders, Bronwyn M., Kendrick, Gary A., Konlechner, Teresa M., Mayer-Pinto, Mariana, Pomeroy, Andrew W.M., Rogers, Abbie A., Simpson, Viveka, Van Rooijen, Arnold A., Waltham, Nathan J., and Swearer, Stephen E. (2024) Current extent and future opportunities for living shorelines in Australia. Science of the Total Environment, 917. 17063.

Morais, Juliano, Tebbett, Sterling B., Morais Araujo, Renato A., and Bellwood, David R. (2024) Hot spots of bleaching in massive Porites coral colonies. Marine Environmental Research, 193. 106276.

McKenna, S., and Van de Wetering, C. (2024) Marine Benthic Habitat Assessment – Half Tide Tug Harbour, December 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Mather, Rachel, Chin, Andrew, Rigby, Cassandra, Cooke, Steven J., Fahmi, Haque, Alifa Bintha, Mizrahi, Meira, and Grant, Michael I. (2024) Murky waters: Assessing the vulnerabilities of Indo-West Pacific non-marine elasmobranchs to inform future conservation planning priorities. Aquatic Conservation: Marine and Freshwater Ecosystems, 34 (1). e4039.

Morais, Juliano, Tebbett, Sterling B., Morais Araujo, Renato A., and Bellwood, David R. (2024) Natural recovery of corals after severe disturbance. Ecology Letters, 27 (1). e14332.

McKenna, S.A., Concannon, T., Reason, C.L., and Rasheed, M.A. (2024) Port of Abbot Point Long-Term Seagrass Monitoring Program 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S.A., Concannon, T.G., and Hoffmann, L. (2024) Port of Townsville Seagrass Monitoring Program: Brief Report May 2024. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Miller, Michaela E., Motti, Cherie A., Hamann, Mark, and Kroon, Frederieke J. (2023) Assessment of microplastic bioconcentration, bioaccumulation and biomagnification in a simple coral reef food web. Science of the Total Environment, 858. 159615.

Monk, Christopher T., Power, Michael, Freitas, Carla, Harrison, Philip M., Heupel, Michelle, Kuparinen, Anna, Moland, Even, Simpfendorfer, Colin, Villegas-Ríos, David, and Olsen, Esben M. (2023) Atlantic cod individual spatial behaviour and stable isotope associations in a no-take marine reserve. Journal of Animal Ecology, 92 (12). pp. 2333-2347.

Maini, Bani, Blythe, Jessica L., Darling, Emily S., and Gurney, Georgina G. (2023) Charting the value and limits of other effective conservation measures (OECMs) for marine conservation: A Delphi study. Marine Policy, 147. 105350.

Moore, Billy, Jolly, Jeffrey, Izumiyama, Michael, Kawai, Erina, Ryu, Taewoo, and Ravasi, Timothy (2023) Clownfish larvae exhibit faster growth, higher metabolic rates and altered gene expression under future ocean warming. Science of the Total Environment, 873. 162296.

Manríquez, Patricio H., González, Claudio P., Jara, María Elisa, Watson, Sue-Ann, Torres, Rodrigo, Domenici, Paolo, and Duarte, Cristian (2023) Combined effects of climate change stressors and predators with contrasting feeding-digestion strategies on a mussel species. Marine Pollution Bulletin, 187. 114554.

Marangon, Emma (2023) Coral reef symbioses under a changing climate: an integrative approach. PhD thesis, James Cook University.

Marangon, Emma, Uthicke, Sven, Patel, Frances, Marzinelli, Ezequiel M., Bourne, David G., Webster, Nicole S., and Laffy, Patrick W. (2023) Life-stage specificity and cross-generational climate effects on the microbiome of a tropical sea urchin (Echinodermata: Echinoidea). Molecular Ecology, 32 (20). pp. 5645-5660.

McKenna, S., and Firby, L. (2023) Marine Benthic Habitat Assessment – Hay Point Coal Terminal Berth 1 Extension, January 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S., and Firby, L. (2023) Marine Plant Survey – Northern Breakwater Rehabilitation Project – Port of Mackay, January 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Mason, Benjamin M., Koyanagi, Mitsumasa, Sugihara, Tomohiro, Iwasaki, Makoto, Slepak, Vladlen, Miller, David J., Sakai, Yusuke, and Terakita, Akihisa (2023) Multiple opsins in a reef-building coral, Acropora millepora. Scientific Reports, 13. 1628.

McWilliam, Mike, Dornelas, Maria, Alvarez-Noriega, Mariana, Baird, Andrew H., Connolly, Sean R., and Madin, Joshua S. (2023) Net effects of life-history traits explain persistent differences in abundance among similar species. Ecology, 104 (1). e3863.

McCormick, M.I., Fakan, E.P., Vamvounis, G., Bosshard, S., Moad, C., Smyth, E., Gatenby, P., Edmiston, J., Patel, K., and Allan, B.J.M. (2023) No effects of plasticized microplastics on the body condition and reproduction of a marine fish. ICES Journal of Marine Science, 80 (5). pp. 1267-1276.

McKenna, S.A. (2023) Port of Townsville Channel Upgrade Project: Capital Dredge Footprint Seagrass Survey – Updated August 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S. (2023) Port of Townsville Eastern Breakwater Marine Plant Assessment. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Madin, Joshua S., McWilliam, Michael, Quigley, Kate, Bay, Line K., Bellwood, David, Doropoulos, Christopher, Fernandes, Leanne, Harrison, Peter, Hoey, Andrew S., Mumby, Peter J., Ortiz, Juan C., Richards, Zoe T., Riginos, Cynthia, Schiettekatte, Nina M.D., Suggett, David J., and van Oppen, Madeleine J.H. (2023) Selecting coral species for reef restoration. Journal of Applied Ecology, 60 (8). pp. 1537-1544.

Mitchell, J.D., Drymon, J.M., Vardon, J., Coulson, P.G., Simpfendorfer, C.A., Scyphers, S.B., Kajiura, S.M., Hoel, K., Williams, S., Ryan, K.L., Barnett, A., Heupel, M.R., Chin, A., Navarro, M., Langlois, T., Ajemian, M.J., Gilman, E., Prasky, E., and Jackson, G. (2023) Shark depredation: future directions in research and management. Reviews in Fish Biology and Fisheries, 33. pp. 475-499.

Mazoudier, Samuel Q., Kingsford, Michael J., Strickland, Jessica K., and Pitt, Kylie A. (2023) Stable isotopes reveal sargassum rafts provide a trophic subsidy to juvenile pelagic fishes. Estuarine, Coastal and Shelf Science, 295. 108548.

Martinez-Baena, Francisco, Raoult, Vincent, Taylor, Matthew D., Gaston, Troy F., McLeod, Ian, and Bishop, Melanie J. (2023) Trophic Structure of Temperate Australian Oyster Reefs Within the Estuarine Seascape: a Stable Isotope Analysis. Estuaries and Coasts, 46. pp. 844-859.

Motson, Katie, Hutson, Kate S., and Hoey, Andrew S. (2023) Variation in the parasite communities of three co-occurring herbivorous coral reef fishes. Journal of Fish Biology, 102 (4). pp. 757-772.

Moore, Billy, Herrera, Marcela, Gairin, Emma, Li, Chengze, Miura, Saori, Jolly, Jeffrey, Mercader, Manon, Izumiyama, Michael, Kawai, Erina, Ravasi, Timothy, Laudet, Vincent, and Ryu, Taewoo (2023) The chromosome-scale genome assembly of the yellowtail clownfish Amphiprion clarkii provides insights into the melanic pigmentation of anemonefish. G3: Genes, Genomes, Genetics, 13 (3). jkad002.

McKenna, S., Carter, A., Smit, N., McMahon, K., and Coles, R. (2023) An inventory of northern Australia’s seagrass data: research report Project 1.32a. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Mihaila, Alisa A., Magnusson, Marie, Glasson, Christopher R.K., and Lawton, Rebecca J. (2023) The reproductive phenology of Asparagopsis armata in New Zealand – Potential shifts 35 years later. Algal Research, 76. 103318.

Morse, Peter, and Huffard, Christine (2022) Chemotactile social recognition in the blue-ringed octopus, Hapalochlaena maculosa. Marine Biology, 169 (8). 99.

McLeod, Ian M., Hein, Margaux Y., Babcock, Russell, Bay, Line, Bourne, David G., Cook, Nathan, Doropoulos, Christopher, Gibbs, Mark, Harrison, Peter, Lockie, Stewart, van Oppen, Madeleine J.H., Mattocks, Neil, Page, Cathie A., Randall, Carly J., Smith, Adam, Smith, Hillary A., Suggett, David J., Taylor, Bruce, Vella, Karen J., Wachenfeld, David, and Boström-Einarsson, Lisa (2022) Coral restoration and adaptation in Australia: The first five years. PLoS ONE, 17 (11). e0273325.