Items where Subject is "31 BIOLOGICAL SCIENCES > 3103 Ecology > 310305 Marine and estuarine ecology (incl. marine ichthyology)"

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Vulliet, Cecile, Koci, Jack, Jarihani, Ben, Sheaves, Marcus, and Waltham, Nathan (2024) Assessing Tidal Hydrodynamics in a Tropical Seascape Using Structure-from‐Motion Photogrammetry and 2D Flow Modelling. Estuaries and Coasts, 47. pp. 352-375.

Shanafield, Margaret, Blanchette, Melanie, Daly, Edoardo, Wells, Naomi, Burrows, Ryan M, Korbel, Kathryn, Rau, Gabriel C., Bourke, Sarah, Wakelin-King, Gresley, Holland, Aleicia, Ralph, Timothy, McGrath, Gavan, Robson, Belinda, Fowler, Keirnan, Andersen, Martin S., Yu, Songyan, Jones, Christopher S., Waltham, Nathan, Banks, Eddie W., Flatley, Alissa, Leigh, Catherine, Maxwell, Sally, Siebers, Andre, Bond, Nick, Beesley, Leah, Hose, Grant, Iles, Jordan, Cartwright, Ian, Reid, Michael, de Castro Tayer, Thiaggo, and Duvert, Clement (2024) Australian non-perennial rivers: Global lessons and research opportunities. Journal of Hydrology, 634. 130939.

Remmers, Tiny, Grech, Alana, Roelfsema, Chris, Gordon, Sophie, Lechene, Marine, and Ferrari, Renata (2024) Close-range underwater photogrammetry for coral reef ecology: a systematic literature review. Coral Reefs, 43. pp. 35-52.

Morris, Rebecca L., Campbell-Hooper, Erin, Waters, Elissa, Bishop, Melanie J., Lovelock, Catherine E., Lowe, Ryan J., Strain, Elizabeth M.A., Boon, Paul, Boxshall, Anthony, Browne, Nicola K., Carley, James T., Fest, Benedikt J., Fraser, Matthew W., Ghisalberti, Marco, Gillanders, Bronwyn M., Kendrick, Gary A., Konlechner, Teresa M., Mayer-Pinto, Mariana, Pomeroy, Andrew W.M., Rogers, Abbie A., Simpson, Viveka, Van Rooijen, Arnold A., Waltham, Nathan J., and Swearer, Stephen E. (2024) Current extent and future opportunities for living shorelines in Australia. Science of the Total Environment, 917. 17063.

Anthony, Colin J., McDermott, Grace, Lock, Colin, Miller, Therese, Bentlage, Bastian, and Raymundo, Laurie J. (2024) Depth-independent phenotypic variation of massive Porites coral color morphs. Marine Ecology, 45 (1). e12788.

Collins, William, Bellwood, David, Morais Araujo, Renato, Waltham, Nathan, and Siqueira Correa, Alexandre (2024) Diel movement patterns in nominally nocturnal coral reef fishes (Haemulidae and Lutjanidae): Intra vs. Interspecific variation. Coral Reefs. (In Press)

Lutzenkirchen, Lucas L., Duce, Stephanie J., and Bellwood, David R. (2024) Exploring benthic habitat assessments on coral reefs: a comparison of direct field measurements versus remote sensing. Coral Reefs, 43. pp. 265-280.

Patel, Frances, Zeng, Chaoshu, Logan, Murray, and Uthicke, Sven (2024) Feeding rates and carbon and nitrogen partitioning in crown-of-thorns sea star larvae (Acanthaster cf. solaris) during development. Marine Biology, 171 (2). 61.

Gahan, James, Bellwood, David R., Bellwood, Orpha, and Schlaefer, Jodie (2024) Gelatinous versus non-gelatinous zooplankton: their value as food for planktivorous coral reef fishes. Coral Reefs, 43. pp. 243-252.

Morais, Juliano, Tebbett, Sterling B., Morais Araujo, Renato A., and Bellwood, David R. (2024) Hot spots of bleaching in massive Porites coral colonies. Marine Environmental Research, 193. 106276.

Datta, Amber W., Wyborn, Carina, Chaffin, Brian C., and Barnes, Michele L. (2024) Imagining reef futures after mass coral bleaching events. Environmental Science & Policy, 151. 103625.

Clements, Kendall D., German, Donovan P., Piche, Jacinthe, Tribollet, Aline, and Choat, John Howard (2024) Integrating ecological roles and trophic diversification on coral reefs: multiple lines of evidence identify parrotfishes as microphages. Biological Journal of the Linnean Society. (In Press)

Waltham, Nathan J., and Sheaves, Marcus (2024) Investigating thermal regime on seawalls to maximise nature positive outcomes for encrusting tropical oysters. Ecological Engineering, 209. 107426.

Pell, T.J., McClure, E.C., Emslie, M.J., and Hoey, A.S. (2024) Limited susceptibility of Lobophora to browsing fishes on inshore reefs of the Great Barrier Reef. Coral Reefs, 43. pp. 5-17.

Grillo, Ana Carolina, Vieira, Edson Aparecido, and Longo, Guilherme Ortigara (2024) Macroalgae and zoanthids require physical contact to harm corals in Southwestern Atlantic. Coral Reefs, 43. pp. 107-118.

Ritter, Carmen J., and Bourne, David G. (2024) Marine amphipods as integral members of global ocean ecosystems. Journal of Experimental Marine Biology and Ecology, 572. 151985.

Mather, Rachel, Chin, Andrew, Rigby, Cassandra, Cooke, Steven J., Fahmi, Haque, Alifa Bintha, Mizrahi, Meira, and Grant, Michael I. (2024) Murky waters: Assessing the vulnerabilities of Indo-West Pacific non-marine elasmobranchs to inform future conservation planning priorities. Aquatic Conservation: Marine and Freshwater Ecosystems, 34 (1). e4039.

Morais, Juliano, Tebbett, Sterling B., Morais Araujo, Renato A., and Bellwood, David R. (2024) Natural recovery of corals after severe disturbance. Ecology Letters, 27 (1). e14332.

Hook, Sharon E., Smith, Rachael A., Waltham, Nathan, and Warne, Michael St.J. (2024) Pesticides in the Great Barrier Reef catchment area: Plausible risks to fish populations. Integrated Environmental Assessment and Management. (In Press)

Grillo Monteiro, Ana, and Longo, Guilherme Ortigara (2024) Physical contact stress can trigger larval release in the brooding coral Siderastrea stellata. Marine Biodiversity, 54. 48.

Twomey, Alice J., Nunez, Karinna, Carr, Joel A., Crooks, Steve, Freiss, Daniel A., Glamore, William, Orr, Michelle, Reef, Ruth, Rogers, Kerrylee, Waltham, Nathan J., and Lovelock, Catherine E. (2024) Planning hydrological restoration of coastal wetlands: Key model considerations and solutions. Science of the Total Environment, 915. 169881.

Francis, Robin K., Tostevin, Genevieve, Barbasch, Tina, Branconi, Rebecca, Srinivasan, Maya, Jones, Geoffrey P., and Buston, Peter M. (2024) Positive spatial autocorrelation in three habitat quality indicators sets the stage for evolution of adaptive dispersal plasticity in a coral reef fish. Coral Reefs, 43. pp. 69-78.

Webster, Emily, Duce, Stephanie, Hamann, Mark, Murray, Nicholas, Shimada, Takahiro, and Limpus, Colin (2024) Should I stay or should I go? The influence of environmental conditions on green turtle residence time and outward transit in foraging areas. Marine Biology, 171. 144.

Collins, William P., Bellwood, David R., and Morais, Renato A. (2024) Small coral reef fishes with large ecological footprints. Coral Reefs, 43. pp. 233-242.

Galbraith, G.F., Cresswell, B.J., McClure, E.C., and Hoey, A.S. (2024) Tropical seamounts as stepping-stones for coral reef fishes: range extensions and new regional distributions from mesophotic ecosystems in the Coral Sea, Australia. Marine Biodiversity, 54. 17.

Sahri, Achmad, Hocdé, Régis, Nandika, Muhammad R., Fahmi, Fahmi, Tjarles, Lay, Alifatri, La O., Manuhutu, Jafry F., Taborat, Mathias, Bata, Ferdinand I.P., Kreb, Danielle, Mustika, Putu L.K., Mannocci, Laura, and UNSPECIFIED (2024) Updating the Cetacean Species List of Raja Ampat, Indonesia with Additional Sightings of the Rarely Documented Omura’s Whale (Balaenoptera omurai). Aquatic Mammals, 50 (3). pp. 171-178.

Sheaves, M., Mattone, C., Barnett, A., Abrantes, K., Bradley, M., Sheaves, A., Sheaves, J., and Waltham, N.J. (2024) Whale sharks as oceanic nurseries for Golden Trevally. Pacific Conservation Biology, 30 (1). PC23004.

Uthicke, Sven, Doyle, Jason R., Gomez Cabrera, Maria, Patel, Frances, McLatchie, Madi J., Doll, Peter C., Chandler, Josie F., and Pratchett, Morgan S. (2024) eDNA monitoring detects new outbreak wave of corallivorous seastar (Acanthaster cf. solaris) at Lizard Island, Great Barrier Reef. Coral Reefs. (In Press)

Cumming, Graeme, James, Nicholas L., Chua, Chia-Miin, and Huertas, Victor (2024) A framework and review of evidence of the importance of coral reefs for marine birds in tropical ecosystems. Ecology and Evolution, 14 (8). e70165.

Tebbett, Sterling B., Bennett, Scott, and Bellwood, David R. (2024) A functional perspective on the meaning of the term ‘herbivore’: patterns versus processes in coral reef fishes. Coral Reefs, 43. pp. 219-232.

Tebbett, Sterling B., Bellwood, David R., Bassett, Tahlia, Cuttler, Michael V.W., Moustaka, Molly, Wilson, Shaun K., Yan, Helen F., and Evans, Richard D. (2024) The limited role of herbivorous fishes and turf-based trophic pathways in the functioning of turbid coral reefs. Reviews in Fish Biology and Fisheries, 34 (1). pp. 349-460.

Reolid, Jesus, Bialik, Or M., Lindhorst, Sebastian, Eisermann, Jan Oliver, Petrovic, Alexander, Hincke, Carola, Beaman, Robin J., Webster, Jody M., and Betzler, Christian (2024) A new type of Halimeda bioherm on the Queensland Plateau, NE Australia. Coral Reefs, 2024. (In Press)

Pytka, J.M., Kyne, P.M., Carlson, J.K., Wosnick, N., and Jabado, R.W. (2024) A tangled web: global review of fishing interactions with rhino rays. Reviews in Fish Biology and Fisheries, 34. pp. 131-160.

Losciale, Riccardo, Day, Jon C., Rasheed, Michael A., and Heron, Scott F. (2024) The vulnerability of World Heritage seagrass habitats to climate change. Global Change Biology, 30 (1). e17113.

Harrison, H.B., Drane, L., Cresswell, B.J., Evans, R.D., Galbraith, G.F., Srinivasan, M., Taylor, B.M., Williamson, D.H., and Jones, G.P. (2023) Ageing of juvenile coral grouper (Plectropomus maculatus) reveals year-round spawning and recruitment: implications for seasonal closures. Proceedings of the Royal Society of London Series B, Biological Sciences, 290. 20230584.

Herrera, Marcela, Ravasi, Timothy, and Laudet, Vincent (2023) Anemonefishes: A model system for evolutionary genomics. F1000Research, 12. 204.

Miller, Michaela E., Motti, Cherie A., Hamann, Mark, and Kroon, Frederieke J. (2023) Assessment of microplastic bioconcentration, bioaccumulation and biomagnification in a simple coral reef food web. Science of the Total Environment, 858. 159615.

Monk, Christopher T., Power, Michael, Freitas, Carla, Harrison, Philip M., Heupel, Michelle, Kuparinen, Anna, Moland, Even, Simpfendorfer, Colin, Villegas-Ríos, David, and Olsen, Esben M. (2023) Atlantic cod individual spatial behaviour and stable isotope associations in a no-take marine reserve. Journal of Animal Ecology, 92 (12). pp. 2333-2347.

Wright, Raven M., Beaman, Robin J., Daniell, James, Bridge, Tom C.L., Pall, Jodie, and Webster, Jody M. (2023) Benthic communities of the lower mesophotic zone on One Tree shelf edge, southern Great Barrier Reef, Australia. Marine and Freshwater Research, 74 (13). pp. 1178-1192.

Tebbett, Sterling B., Connolly, Sean R., and Bellwood, David R. (2023) Benthic composition changes on coral reefs at global scales. Nature Ecology and Evolution, 7 (1). pp. 71-81.

Tebbett, Sterling B., Schlaefer, Jodie A., Bowden, Casey L., Collins, William P., Hemingson, Christopher R., Ling, Scott D., Morais, Juliano, Morais, Renato A., Siqueira, Alexandre C., Streit, Robert P., Swan, Sam, and Bellwood, David R. (2023) Bio-physical determinants of sediment accumulation on an offshore coral reef: A snapshot study. Science of the Total Environment, 895. 165188.

Waltham, Nathan, Lovelock, Catherine, and Buelow, Christina (2023) Blue carbon stocks and cycling in tropical tidal marshes facing grazing pressure. Marine Ecology Progress Series, 717. pp. 1-16.

Suresh, Sneha, Mirasole, Alice, Ravasi, Timothy, Vizzini, Salvatrice, and Schunter, Celia (2023) Brain transcriptome of gobies inhabiting natural CO2 seeps reveal acclimation strategies to long-term acidification. Evolutionary Applications, 16 (7). pp. 1345-1358.

Anderson-King, K.D., Wayman, C., Stephenson, S., Heron, S.F., Lough, J.M., McWilliam, M., Richardson, L.E., Scott, M.E., and Cantin, N.E. (2023) Branching coral growth and visual health during bleaching and recovery on the central Great Barrier Reef. Coral Reefs, 42. pp. 1113-1129.

Cumming, Graeme S., and Bellwood, David R. (2023) Broad-scale analysis of fish community data suggests critical need to support regional connectivity of coral reefs. Ecological Applications, 33 (4). e2849.

Shellock, R.J., Cvitanovic, C., Mckinnon, M.C., Mackay, M., van Putten, I.E., Blythe, J., Kelly, R., Tuohy, P., Maltby, K.M., Mynott, S., Simmonds, N., Bailey, M., Begossi, A., Crona, B., Fakoya, K.A., Ferreira, B.P., Ferrer, A.J.G., Frangoudes, K., Gobin, J., Goh, H.C., Haapasaari, P., Hardesty, B.D., Häussermann, V., Hoareau, K., Hornidge, A.K., Isaacs, M., Kraan, M., Li, Y., Liu, M., Lopes, P.F.M., Mlakar, M., Morrison, T.H., Oxenford, H.A., Pecl, G., Penca, J., Robinson, C., Selim, S.A., Skern-Mauritzen, M., Soejima, K., Soto, D., Spalding, A.K., Vadrot, A., Vaidianu, N., Webber, M., and Wisz, M.S. (2023) Building leaders for the UN Ocean Science Decade: a guide to supporting early career women researchers within academic marine research institutions. ICES Journal of Marine Science, 80 (1). pp. 56-75.

Tanabe, Lyndsey K., Cochran, Jesse E.M., Williams, Colin T., Garzon, Francesco, Langner, Ute, Hardenstine, Royale S., Hawkes, Lucy A., Brainard, Russell E., Eweida, Ameer A., Marshall, Paul A., and Berumen, Michael L. (2023) Case report: tracking data from foraging hawksbill turtles in the northern Red Sea. Animal Biotelemetry, 11. 1.

Maini, Bani, Blythe, Jessica L., Darling, Emily S., and Gurney, Georgina G. (2023) Charting the value and limits of other effective conservation measures (OECMs) for marine conservation: A Delphi study. Marine Policy, 147. 105350.

Johnson, Johanna E., Welch, David J., van Hooidonk, Ruben, Tracey, Dieter, Chandrasa, Ganesha, Molinari, Bianca, Triani, Deti, Tania, Casandra, and Susanto, Handoko (2023) Climate change implications for the Arafura and Timor Seas region: assessing vulnerability of marine systems to inform management and conservation. Climatic Change, 176. 88.

Moore, Billy, Jolly, Jeffrey, Izumiyama, Michael, Kawai, Erina, Ryu, Taewoo, and Ravasi, Timothy (2023) Clownfish larvae exhibit faster growth, higher metabolic rates and altered gene expression under future ocean warming. Science of the Total Environment, 873. 162296.

Hutchings, Marissa J., Hamann, Mark, Smithers, Scott G., Daley, Emily, and Birtles, R. Alastair (2023) Color pattern complexity in dwarf minke whales (Balaenoptera acutorostrata) of the northern Great Barrier Reef of Australia. Marine Mammal Science, 39 (3). pp. 780-793.

Manríquez, Patricio H., González, Claudio P., Jara, María Elisa, Watson, Sue-Ann, Torres, Rodrigo, Domenici, Paolo, and Duarte, Cristian (2023) Combined effects of climate change stressors and predators with contrasting feeding-digestion strategies on a mussel species. Marine Pollution Bulletin, 187. 114554.

Cardozo-Ferreira, Gabriel C., Mendes, Thiago C., Cordeiro, César A.M.M., Giglio, Vinicius J., Magris, Rafael A., Choat, John H., Clements, Kendall D., Eggertsen, Linda, Ferreira, Carlos E.L., and Francini-Filho, Ronaldo B. (2023) Comment on the article “Effect of human impact on coral reef herbivorous fish niche” by Leitão et al. (2023). Marine Biology, 170 (11). 145.

Diggins, Rebecca L., Grimm, Jessica, Mendez, Diana, Jones, Karina, Hamann, Mark, Bell, Ian, and Ariel, Ellen (2023) Confirmed feasibility of a satellite tracker attachment method on small juvenile hawksbill turtles Eretmochelys imbricata. Marine Ecology Progress Series, 704. pp. 119-130.

Hall, April E., Sievers, Katie T., and Kingsford, Michael J. (2023) Conservation benefits of no-take marine reserves outweigh modest benefits of partially protected areas for targeted coral reef fishes. Coral Reefs, 42. pp. 319-333.

Canning, Adam D., Smart, James C.R., Dyke, Joshua, Curwen, Graeme, Hasan, Syezlin, and Waltham, Nathan J. (2023) Constructed Wetlands Suitability for Sugarcane Profitability, Freshwater Biodiversity and Ecosystem Services. Environmental Management, 71. pp. 304-320.

Lubitz, Nicolas, Daly, Ryan, Filmalter, John D., Sheaves, Marcus, Cowley, Paul D., Naesje, Tor F., and Barnett, Adam (2023) Context drives movement patterns in a mobile marine predator. Movement Ecology, 11. 28.

Spiecker, Lisa, Curdt, Franziska, Bally, Andreas, Janzen, Nadja, Kraemer, Philipp, Leberecht, Bo, Kingsford, Michael J., Mouritsen, Henrik, Winklhofer, Michael, and Gerlach, Gabriele (2023) Coral reef fish larvae show no evidence for map-based navigation after physical displacement. iScience, 26 (6). 106950.

Cresswell, B.J., Galbraith, G.F., Harrison, H.B., McCormick, M.I., and Jones, G.P, (2023) Coral reef pinnacles act as ecological magnets for the abundance, diversity and biomass of predatory fishes. Marine Ecology Progress Series, 717. pp. 143-156.

Hoegh-Guldberg, Ove, Skirving, William, Dove, Sophie G., Spady, Blake L., Norrie, Andrew, Geiger, Erick F., Liu, Gang, De La Cour, Jacqueline L., and Manzello, Derek P. (2023) Coral reefs in peril in a record-breaking year. Science, 382 (6676). pp. 1238-1240.

Chow, Cher F.Y., Bolton, Caitlin, Boutros, Nader, Brambilla, Viviana, Fontoura, Luisa, Hoey, Andrew S., Madin, Joshua S., Pizarro, Oscar, Torres-Pulliza, Damaris, Woods, Rachael M., Zawada, Kyle J.A., Barbosa, Miguel, and Dornelas, Maria (2023) Coral settlement and recruitment are negatively related to reef fish trait diversity. Coral Reefs, 42. pp. 519-533.

Harris, Daniel, Webster, Jody, Vila-Concejo, Ana, Duce, Stephanie, Leon, Javier, and Hacker, Stephanie (2023) Defining multi-scale surface roughness of a coral reef using a high-resolution LiDAR digital elevation model. Geomorphology, 439. 108852.

Douglas, Sophia R.L., Tebbett, Sterling B., Choukroun, Severine, Goatley, Christopher H.R., and Bellwood, David R. (2023) Depth stratified light trap sampling reveals variation in the depth distribution of late-stage cryptobenthic reef fish larvae. Coral Reefs, 42 (2). pp. 507-512.

Burn, D., Hoey, A.S., Matthews, S., Harrison, H.B., and Pratchett, M.S. (2023) Differential bleaching susceptibility among coral taxa and colony sizes, relative to bleaching severity across Australia's Great Barrier Reef and Coral Sea Marine Parks. Marine Pollution Bulletin, 191. 114907.

Borghi, Stefano, Clements, Matthew, Webb, Monique, Bostock, Helen, Webster, Jody M., McNeil, Mardi, Nothdurft, Luke, and Byrne, Maria (2023) Discovery of the dendrophylliid scleractinian Heteropsammia cochlea (Spengler, 1781) in Halimeda bioherms of the Northern Great Barrier Reef. Marine Biodiversity, 53 (3). 39.

Alvarez-Noriega, Mariana, Madin, Joshua S., Baird, Andrew H., Dornelas, Maria, and Connolly, Sean R. (2023) Disturbance-induced changes in population size structure promote coral biodiversity. American Naturalist, 202 (5). pp. 604-615.

Smith, Hillary A., Chen, Carla C. M., Pollock, F. Joseph, Re, Morgan, Willis, Bette L., and Bourne, David G. (2023) Drivers of coral mortality in non-acute disturbance periods. Marine Ecology Progress Series, 717. pp. 37-50.

Rosa, Rui, Doubleday, Zoe, Kuba, Michael J., Strugnell, Jan M., Vidal, Erica A.G., and Villanueva, Roger (2023) Editorial: Cephalopods in the Anthropocene: multiple challenges in a changing ocean. Frontiers in Physiology, 14. 1250233.

Blandford, M.I., Hillcoat, K.B., Pratchett, M.S., and Hoey, A.S. (2023) Effects of habitat fragmentation on the recruitment and early post-settlement survival of coral reef fishes. Marine Environmental Research, 183. 105798.

Ban, Natalie C., Darling, Emily S., Gurney, Georgina G., Friedman, Whitney, Jupiter, Stacy D, Lestari, W. Peni, Yulianto, Irfan, Pardede, Sinta, Tarigan, Sukma A.R., Prihatiningsih, Puji, Mangubhai, Sangeeta, Naisilisili, Waisea, Dulunaqio, Sirilo, Naggea, Josheena, Ranaivoson, Ravaka, Agostini, Vera N., Ahmadia, Gabby, Blythe, Jessica, Campbell, Stuart J., Claudet, Joachim, Cox, Courtney, Epstein, Graham, Estradivari, Fox, Margaret, Gill, David, Himes-Cornell, Amber, Jonas, Harry, Mcleod, Elizabeth, Muthiga, Nyawira A., and McClanahan, Tim (2023) Effects of management objectives and rules on marine conservation outcomes. Conservation Biology, 37 (6). e14156.

Grant, Michael I., Kyne, Peter M., James, Julie, Hu, Yi, Mukherji, Sushmita, Amepou, Yolarnie, Baje, Leontine, Chin, Andrew, Johnson, Grant, Lee, Tegan, Mahan, Brandon, Wurster, Christopher, White, William T., and Simpfendorfer, Colin A. (2023) Elemental analysis of vertebrae discerns diadromous movements of threatened non-marine elasmobranchs. Journal of Fish Biology, 103 (6). pp. 1357-1373.

Grinblat, Mila, Eyal-Shaham, Lee, Eyal, Gal, Ben-Zvi, Or, Harii, Saki, Morita, Masaya, Sakai, Kazuhiko, Hirose, Mamiko, Miller, David J., and Loya, Yossi (2023) Energy allocation trade-offs as a function of age in fungiid corals. Frontiers in Marine Science, 10. 1113987.

Peinemann, Viktor Nunes, Pombo-Ayora, Lucia, Cochran, Jesse E.M., Marchese, Fabio, Chimienti, Giovanni, Rodrigue, Mattie, Eweida, Ameer A., Marshall, Paul A., Benzoni, Francesca, and Berumen, Michael L. (2023) First record of Boulenger's anthias Sacura boulengeri (Heemstra 1973) in the Red Sea. Journal of Fish Biology, 102 (1). pp. 294-298.

Baird, Andrew, Prior, Susan, Bridge, Thomas, and Cowman, Peter (2023) First records of coral spawning on Norfolk Island. Galaxea, Journal of Coral Reef Studies, 25 (1). pp. 3-4.

Quimpo, Timothy Joseph R., Requilme, Jeremiah Noelle, Gomez, Elizabeth, Sayco, Sherry Lyn, Dumalagan, Edwin E., Siringan, Fernando P., Conaco, Cecilia, and Cabaitan, Patrick C. (2023) Fish and benthic communities in an offshore and well-managed coral reef after bleaching disturbance in the Philippines. Marine Biology, 170 (10). 123.

Devloo-Delva, Floriaan, Burridge, Christopher P., Kyne, Peter M., Brunnschweiler, Juerg M., Chapman, Demian D., Charvet, Patricia, Chen, Xiao, Cliff, Geremy, Daly, Ryan, Drymon, J. Marcus, Espinoza, Mario, Fernando, Daniel, Barcia, Laura Garcia, Glaus, Kerstin, González-Garza, Blanca I., Grant, Michael I., Gunasekera, Rasanthi M., Hernandez, Sebastian, Hyodo, Susumu, Jabado, Rima W., Jaquemet, Sébastien, Johnson, Grant, Ketchum, James T., Magalon, Hélène, Marthick, James R., Mollen, Frederik H., Mona, Stefano, Naylor, Gavin J.P., Nevill, John E.G., Phillips, Nicole M., Pillans, Richard D., Postaire, Bautisse D., Smoothey, Amy F., Tachihara, Katsunori, Tillet, Bree J., Valerio-Vargas, Jorge A., and Feutry, Pierre (2023) From rivers to ocean basins: The role of ocean barriers and philopatry in the genetic structuring of a cosmopolitan coastal predator. Ecology and Evolution, 13 (2). e9837.

Godinez-Espinosa, Sara, Raoult, Vincent, Smith, Timothy M., Gaston, Troy F., and Williamson, Jane E. (2023) Functional roles of coral reef primary producers examined with stable isotopes. Marine and Freshwater Research, 74 (7). pp. 601-613.

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Brown, Kelly T., Seeto, Johnson, Lal, Monal M., and Miller, Cara E. (2016) Discovery of an important aggregation area for endangered scalloped hammerhead sharks, Sphyrna lewini, in the Rewa River estuary, Fiji Islands. Pacific Conservation Biology, 22. pp. 242-248.

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Tol, Samantha J., Coles, Rob G., and Congdon, Bradley C. (2016) Dugong dugon feeding in tropical Australian seagrass meadows: implications for conservation planning. PeerJ, 4. e2194.

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Munday, Philip L., Welch, Megan J., Allan, Bridie J.M., Watson, Sue-Ann, McMahon, Shannon J., and McCormick, Mark I. (2016) Effects of elevated CO2 on predator avoidance behaviour by reef fishes is not altered by experimental test water. PeerJ, 4. e2501. pp. 1-18.

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Morgan, Kyle M., Perry, Chris T., Smithers, Scott G., Johnson, Jamie A., and Daniell, James J. (2016) Evidence of extensive reef development and high coral cover in nearshore environments: implications for understanding coral adaptation in turbid settings. Scientific Reports, 6. 29616. pp. 1-10.

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Guo, Zixiao, Huang, Yelin, Chen, Yongmei, Duke, Norman C., Zhong, Cairong, and Shi, Sugua (2016) Genetic discontinuities in a dominant mangrove Rhizophora apiculata (Rhizophoraceae) in the Indo-Malesian region. Journal of Biogeography, 43. pp. 1856-1868.

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Brandl, Simon J., Emslie, Michael J, Ceccarelli, Daniela M., and Richards, Zoe T. (2016) Habitat degradation increases functional originality in highly diverse coral reef fish assemblages. Ecosphere, 7 (11). e01557. pp. 1-19.

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Roberts, May B., Jones, Geoffrey P., McCormick, Mark I., Munday, Philip L., Neale, Stephen, Thorrold, Simon, Robitzch, Vanessa S.N., and Berumen, Michael L. (2016) Homogeneity of coral reef communities across 8 degrees of latitude in the Saudi Arabian Red Sea. Marine Pollution Bulletin, 105 (2). pp. 558-565.

Lema, Kimberley A., Clode, Peta L., Kilburn, Matt R., Thornton, Ruth, Willis, Bette L., and Bourne, David G. (2016) Imaging the uptake of nitrogen-fixing bacteria into larvae of the coral Acropora millepora. ISME Journal, 10 (7). pp. 1804-1808.

Sievers, K.T., Barr, R.J., Maloney, J.M., Driscoll, N.W., and Anderson, T.W. (2016) Impact of habitat structure on fish populations in kelp forests at a seascape scale. Marine Ecology Progress Series, 557. pp. 51-63.

Udyawer, Vinay, Read, Mark, Hamann, Mark, Heupel, Michelle R., and Simpfendorfer, Colin A. (2016) Importance of shallow tidal habitats as refugia from trawl fishing for sea snakes. Journal of Herpetology, 50 (4). pp. 527-533.

Magris, Rafael A., Treml, Eric A., Pressey, Robert L., and Weeks, Rebecca (2016) Integrating multiple species connectivity and habitat quality into conservation planning for coral reefs. Ecography, 39 (7). pp. 649-664.

Bennett, Holly M., Altenrath, Christine, Woods, Lisa, Davy, Simon K., Webster, Nicole S., and Bell, James J. (2016) Interactive effects of temperature and pCO2 on sponges: from the cradle to the grave. Global Change Biology, 23. pp. 2031-2046.

Raina, Jean-Baptiste, Tapiolas, Dianne, Motti, Cherie A., Foret, Sylvain, Seemann, Torsten, Tebben, Jan, Willis, Bette L., and Bourne, David G. (2016) Isolation of an antimicrobial compound produced by bacteria associated with reef-building corals. PeerJ, 4. e2275. pp. 1-20.

MacNeil, M. Aaron, Mellin, Camille, Pratchett, Morgan S., Hoey, Jessica, Anthony, Kenneth R.N., Cheal, Alistair J., Miller, Ian, Sweatman, Hugh, Cowan, Zara L., Taylor, Sascha, Moon, Steven, and Fonnesbeck, Chris J. (2016) Joint estimation of crown of thorns (Acanthaster planci) densities on the Great Barrier Reef. PeerJ, 4. e2310. pp. 1-17.

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Frisch, Ashley J., Cameron, Darren S., Pratchett, Morgan S., Williamson, David H., Williams, Ashley J., Reynolds, Adam D., Hoey, Andrew S., Rizzari, Justin R., Evans, Louisa, Kerrigan, Brigid, Muldoon, Geoffrey, Welch, David, and Hobbs, Jean-Paul A. (2016) Key aspects of the biology, fisheries and management of Coral grouper. Reviews in Fish Biology and Fisheries, 26 (3). pp. 303-325.

Adkins, Merritt E., Simpfendorfer, Colin A., and Tobin, Andrew J. (2016) Large tropical fishes and their use of the nearshore littoral, intertidal and subtidal habitat mosaic. Marine and Freshwater Research, 67. MF14339. pp. 1534-1545.

Williamson, David H., Harrison, Hugo B., Almany, Glenn R., Berumen, Michael L., Bode, Michael, Bonin, Mary C., Choukroun, Severine, Doherty, Peter J., Frisch, Ashley J., Saenz-Agudelo, Pablo, and Jones, Geoffrey P. (2016) Large-scale, multidirectional larval connectivity among coral reef fish populations in the Great Barrier Reef Marine Park. Molecular Ecology, 25 (24). pp. 6039-6054.

Last, K.S., Hendrick, V.J., Beveridge, C.M., Roberts, D.A., and Wilding, T.A. (2016) Lethal and sub-lethal responses of the biogenic reef forming polychaete Sabellaria alveolata to aqueous chlorine and temperature. Marine Environmental Research, 117. pp. 44-53.

Sambrook, Katie, Jones, Geoffrey P., and Bonin, Mary C. (2016) Life on the edge: coral reef fishes exhibit strong responses to a habitat boundary. Marine Ecology Progress Series, 561. pp. 203-215.

Chartrand, Kathryn M., Bryant, Catherine V., Carter, Alexandra B., Ralph, Peter J., and Rasheed, Michael A. (2016) Light thresholds to prevent dredging impacts on the Great Barrier Reef seagrass, Zostera muelleri ssp. capricorni. Frontiers in Marine Science, 3. 106.

Van Hooidonk, Ruben, Maynard, Jeffrey, Tamelander, Jerker, Gove, Jamison, Raymundo, Laurie, Ahmadia, Gabby, Williams, Gareth, Heron, Scott F., and Planes, Serge (2016) Local-scale projections of coral reef futures and implications of the Paris Agreement. Scientific Reports, 6 (39666). pp. 1-8.

Vergés, Adriana, Doropoulos, Christopher, Malcolm, Hamish A., Skye, Mathew, Garcia-Pizá, Marina, Marzinelli, Ezequiel M., Campbell, Alexandra H., Ballesteros, Enric, Hoey, Andrew S., Vila-Concejo, Ana, Bozec, Yves-Marie, and Steinberg, Peter D. (2016) Long-term empirical evidence of ocean warming leading to tropicalization of fish communities, increased herbivory, and loss of kelp. Proceedings of the National Academy of Sciences of the United States of America, 113 (48). pp. 13791-13796.

Gordon, Sophie E., Goatley, Christopher H.R., and Bellwood, David R. (2016) Low-quality sediments deter grazing by the parrotfish Scarus rivulatus on inner-shelf reefs. Coral Reefs, 35 (1). pp. 285-291.

Quigley, Kate M., Willis, Bette L., and Bay, Line K. (2016) Maternal effects and Symbiodinium community composition drive differential patterns in juvenile survival in the coral Acropora tenuis. Royal Society Open Science, 3. 160471. pp. 1-17.

Sandoval-Herrera, Natalia Ivone, Vargas-Soto, Juan Sebastián, Espinoza, Mario, Clarke, Tayler M., Fisk, Aaron T., and Wehrtmann, Ingo S. (2016) Mercury levels in muscle tissue of four common elasmobranch species from the Pacific coast of Costa Rica, Central America. Regional Studies in Marine Science, 3. pp. 254-261.

Howells, E.J., Willis, B.L., Bay, L.K., and van Oppen, M.J.H. (2016) Microsatellite allele sizes alone are insufficient to delineate species boundaries in Symbiodinium. Molecular Ecology, 25 (12). pp. 2719-2723.

Lerebours, Adélaïde, Chapman, Emma C., Sweet, Michael J., Heupel, Michelle R., and Rotchell, Jeanette M. (2016) Molecular changes in skin pigmented lesions of the coral trout Plectropomus leopardus. Marine Environmental Research, 120. pp. 130-135.

Pernice, Mathieu, Sinutok, Sutinee, Sablok, Gaurav, Commault, Audrey S., Schliep, Martin, Macreadie, Peter I., Rasheed, Michael A., and Ralph, Peter J. (2016) Molecular physiology reveals ammonium uptake and related gene expression in the seagrass Zostera muelleri. Marine Environmental Research, 122. pp. 126-134.

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Sih, Tiffany L., and Kingsford, Michael J. (2016) Near-reef elemental signals in the otoliths of settling Pomacentrus amboinensis (Pomacentridae). Coral Reefs, 35 (1). pp. 303-315.

Beasley, Isabel, Jedensjo, Maria, Wijaya, Gede Mahendra, Anamiato, Jim, Kahn, Benjamin, and Kreb, Danielle (2016) Observations on Australian humpback dolphins (Sousa sahulensis) in waters of the Pacific Islands and New Guinea. Advances in Marine Biology, 73. pp. 219-271.

Cipresso Pereira, Pedro Henrique, Silva Leal, Isabela Carolina, and De Araújo, Maria (2016) Observer presence may alter the behaviour of reef fishes associated with coral colonies. Marine Ecology, 37 (4). pp. 760-769.

Noonan, Sam H.C., and Fabricius, Katharina E. (2016) Ocean acidification affects productivity but not the severity of thermal bleaching in some tropical corals. ICES Journal of Marine Science, 73 (3). pp. 715-726.

Coppock, Amy G., Gardiner, Naomi M., and Jones, Geoffrey P. (2016) Olfactory responses of coral-reef fishes to coral degradation and crown-of-thorns (Acanthaster planci). Marine and Freshwater Research, 67 (5). pp. 605-611.

Pereira, Pedro H.C., Santos, Marcus, Lippi, Daniel L., and Silva, Pedro (2016) Ontogenetic foraging activity and feeding selectivity of the Brazilian endemic parrotfishScarus zelindae. PeerJ, 4. e2536. pp. 1-15.

Mirbach, Christopher E., and Brandl, Simon J. (2016) Ontogenetic shifts in the social behaviour of pairing coral reef rabbitfishes (Siganidae). Marine Biology Research, 12 (8). pp. 874-880.

Hair, Cathy, Mills, David J., McIntyre, Rowan, and Southgate, Paul C. (2016) Optimising methods for community-based sea cucumber ranching: experimental releases of cultured juvenile Holothuria scabra into seagrass meadows in Papua New Guinea. Aquaculture Reports, 3. pp. 198-208.

Capper, Angela, Erickson, Amy, Ritson-Williams, Raphael, Becerro, Mikel A., Arthur, Karen A., and Paul, Valerie (2016) Palatability and chemical defenses of benthic cyanobacteria to a suite of herbivores. Journal of Experimental Marine Biology and Ecology, 474. pp. 100-108.

Di Sciara, Giuseppe Notarbartolo, Hoyt, Erich, Reeves, Randall, Ardron, Jeff, Marsh, Helene, Vongraven, Dag, and Barr, Bradley (2016) Place-based approaches to marine mammal conservation. Aquatic Conservation: marine and freshwater ecosystems, 26 (Suppl. 2). pp. 85-100.

Leprieur, Fabien, Descombes, Patrice, Gaboriau, Théo, Cowman, Peter F., Parravicini, Valeriano, Kulbicki, Michel, Melián, Carlos J., de Santana, Charles N., Heine, Christian, Mouillot, David, Bellwood, David R., and Pellissier, Loïc (2016) Plate tectonics drive tropical reef biodiversity dynamics. Nature Communications, 7. 11461. pp. 1-8.

Ceccarelli, Daniela M., Emslie, Michael J., and Richards, Zoe T. (2016) Post-disturbance stability of fish assemblages measured at coarse taxonomic resolution masks change at finer scales. PLoS One, 11 (6). e0156232. pp. 1-22.

Hall, April, and Kingsford, Michael (2016) Predators exacerbate competitive interactions and dominance hierarchies between two coral reef fishes. PLoS ONE, 11. e0151778. pp. 1-20.

Abesamis, Rene A., Stockwell, Brian L., Bernardo, Lawrence P.C., Villanoy, Cesar L., and Russ, Garry R. (2016) Predicting reef fish connectivity from biogeographic patterns and larval dispersal modelling to inform the development of marine reserve networks. Ecological Indicators, 66. pp. 534-544.

Bauman, Andrew G., Dunshea, Glenn, Feary, David A., and Hoey, Andrew S. (2016) Prickly business: abundance of sea urchins on breakwaters and coral reefs in Dubai. Marine Pollution Bulletin, 105 (2). pp. 459-465.

Leahy, Susannah M., Russ, Garry R., and Abesamis, Rene A. (2016) Primacy of bottom-up effects on a butterflyfish assemblage. Marine and Freshwater Research, 67 (8). pp. 1175-1185.

McCormick, Mark I. (2016) Protogyny in a tropical damselfish: females queue for future benefit. PeerJ, 4. e2198. pp. 1-26.

Hoey, Andrew S., Howells, Emily, Johansen, Jacob L., Hobbs, Jean-Paul A., Messmer, Vanessa, Bradbury, Dominique M., Wilson, Shaun K., and Pratchett, Morgan S. (2016) Recent advances in understanding the effects of climate change on coral reefs. Diversity, 8 (2). 12. pp. 1-22.

Goatley, C.H.R., González-Cabello, Alonso, and Bellwood, David R. (2016) Reef-scale partitioning of cryptobenthic fish assemblages across the Great Barrier Reef, Australia. Marine Ecology - Progress Series, 544. pp. 271-280.

Babcock, Russell C., Milton, David A., and Pratchett, Morgan S. (2016) Relationships between size and reproductive output in the crown‑of‑thorns starfish. Marine Biology, 163. 234. pp. 1-7.

Ventura, Patricia, Jarrold, Michael D., Merle, Pierre Laurent, Barnay-Verdier, Stéphanie, Zamoum, Thamilla, Rodolfo-Metalpa, Riccardo, Calosi, Piero, and Furla, Paola (2016) Resilience to ocean acidification: decreased carbonic anhydrase activity in sea anemones under high pCO2 conditions. Marine Ecology Progress Series, 559. pp. 257-263.

Thomson, Alexandra C.G., York, Paul H., Smith, Tim M., Sherman, Craig D.H., Booth, David J., Keough, Michael J., Ross, D. Jeff, and Macreadie, Peter I. (2016) Response to "Comment on 'Seagrass viviparous propagules as a potential long-distance dispersal mechanism' by A. C. G. Thomson et al". Estuaries and Coasts, 39. pp. 875-876.

Newman, Stephen J., Williams, Ashley J., Wakefield, Corey B., Nicol, Simon J., Taylor, Brett M., and O'Malley, Joseph (2016) Review of the life history characteristics, ecology and fisheries for deep-water tropical demersal fish in the Indo-Pacific region. Reviews in Fish Biology and Fisheries, 26 (3). pp. 537-562.

Chivers, Douglas P., McCormick, Mark I., Allan, Bridie J.M., and Ferrari, Maud C.O. (2016) Risk assessment and predator learning in a changing world: understanding the impacts of coral reef degradation. Scientific Reports, 6. 32542. pp. 1-7.

Herrera, Marcela, Nanninga, Gerrit B., Planes, Serge, Jones, Geoffrey P., Thorrold, Simon R., Saenz-Agudelo, Pablo, Almany, Glenn R., and Berumen, Michael L. (2016) Seascape and life-history traits do not predict self-recruitment in a coral reef fish. Biology Letters, 12 (8). 20160309. pp. 1-4.

del Mar Palacios , Maria, Warren, Donald T., and McCormick, Mark I. (2016) Sensory cues of a top-predator indirectly control a reef fish mesopredator. Oikos, 125 (2). pp. 201-209.

Mackenzie, Jock R., Duke, Norman C., and Wood, Apanie L. (2016) The Shoreline Video Assessment Method (S-VAM): using dynamic hyperlapse image acquisition to evaluate shoreline mangrove forest structure, values, degradation and threats. Marine Pollution Bulletin, 109 (2). pp. 751-763.

Berry, Kathryn L.E., Hoogenboom, Mia O., Flores, Florita, and Negri, Andrew P. (2016) Simulated coal spill causes mortality and growth inhibition in tropical marine organisms. Scientific Reports, 6. 25894. pp. 1-8.

Jensen, Michael P., Bell, Ian, Limpus, Colin J., Hamann, Mark, Ambar, Stephen, Whap, Terrence, David, Charles, and FitzSimmons, Nancy N. (2016) Spatial and temporal genetic variation among size classes of green turtles (Chelonia mydas) provides information on oceanic dispersal and population dynamics. Marine Ecology Progress Series, 543. pp. 241-256.

Tan, C.H., Pratchett, M.S., Bay, L.K., Graham, E.M., and Baird, A.H. (2016) Spatial and temporal variation in fecundity among populations of Acropora millepora on the Great Barrier Reef. Marine Ecology Progress Series, 561. pp. 147-153.

Warner, Patricia A., Willis, Bette L., and Van Oppen, Madeleine (2016) Sperm dispersal distances estimated by parentage analysis in a brooding scleractinian coral. Molecular Ecology, 25 (6). pp. 1398-1415.

Ribas-Deulofeu, Lauriane, Denis, Vianney, De Palmas, Stéphane, Kuo, Chao-Yang, Hsieh, Hernyi Justin, and Chen, Chaolun Allen (2016) Structure of benthic communities along the Taiwan latitudinal gradient. PLoS ONE, 11 (8). e0160601. pp. 1-19.

van de Water, Jeroen A.J.M., Lamb, Joleah B., Heron, Scott F., Van Oppen, Madeleine J.H., and Willis, Bette L. (2016) Temporal patterns in innate immunity parameters in reef-building corals and linkages with local climatic conditions. Ecosphere, 7 (11). e01505. pp. 1-16.

Laverick, Jack H., Andradi-Brown, Dominic A., Exton, Dan A., Bongaerts, Pim, Bridge, Tom C.L., Lesser, Michael P., Pyle, Richard L., Slattery, Marc, Wagner, Daniel, and Rogers, Alex D. (2016) To what extent do mesophotic coral ecosystems and shallow reefs share species of conservation interest? Environmental Evidence, 5 (16). pp. 1-8.

McDuie, Fiona , and Congdon, Bradley C. (2016) Trans-equatorial migration and non-breeding habitat of tropical shearwaters: implications for modelling pelagic important bird areas. Marine Ecology Progress Series, 550. pp. 219-234.

Morgan, Kyle M., Perry, Chris T., Smithers, Scott G., Johnson, Jamie A., and Gulliver, Pauline (2016) Transitions in coral reef accretion rates linked to intrinsic ecological shifts on turbid-zone nearshore reefs. Geology, 44 (12). pp. 995-998.

Whittock, Paul, Pendoley, Kellie L., and Hamann, Mark (2016) Using habitat suitability models in an industrial setting: the case for internesting flatback turtles. Ecosphere, 7 (11). pp. 1-19.

Khan, J.A., Welsh, J.Q., and Bellwood, D.R. (2016) Using passive acoustic telemetry to infer mortality events in adult herbivorous coral reef fishes. Coral Reefs, 35 (2). pp. 411-420.

Munroe, S.E.M., Simpfendorfer, C.A., and Heupel, M.R. (2016) Variation in blacktip shark movement patterns in a tropical coastal bay. Environmental Biology of Fishes, 99 (4). pp. 377-389.

Samiei, Jahangir Vajed, Saleh, Abolfazl, Shirvani, Arash, Fumani, Neda Sheijooni, Hastroudi, Mehri, and Pratchett, Morgan Stuart (2016) Variation in calcification rate of Acropora downingi relative to seasonal changes in environmental conditions in the northeastern Persian Gulf. Coral Reefs, 35 (4). pp. 1371-1382.

Hall, A.E., and Kingsford, M.J. (2016) Variation in the population demographics of Scolopsis bilineatus in response to predators. Coral Reefs, 35 (4). pp. 1173-1185.

Su, Ruixia, Lough, J.M., and Sun, Donghuai (2016) Variations in massive Porites growth rates at Hainan Island, northern South China Sea. Marine Ecology Progress Series, 546. pp. 47-60.

Heron, Scott F., Maynard, Jeffrey A., Van Hooidonk, Ruben, and Eakin, C. Mark (2016) Warming trends and bleaching stress of the world's coral reefs 1985-2012. Scientific Reports, 6. 38402. pp. 1-14.

Arrigoni, Roberto, Benzoni, Francesca, Huang, Danwei, Fukami, Hironobu, Chen, Chaolun Allen, Berumen, Michael L., Hoogenboom, Mia, Thompson, Damian, Hoeksema, Bert W., Budd, Ann F., Zayasu, Yuna, Terraneo, Tullia I., Kitano, Yuki F., and Baird, Andrew H. (2016) When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus. Contributions to Zoology, 85 (4). pp. 387-422.

Fredston-Hermann, Alexa, Brown, Christopher J., Albert, Simon, Klein, Carissa J., Mangubhai, Sangeeta, Nelson, Joanna L., Teneva, Lida, Wenger, Amelia, Gaines, Steven D., and Halpern, Benjamin S. (2016) Where does river runoff matter for coastal marine conservation? Frontiers in Marine Science, 3. 273. pp. 1-10.

Baird, Mark E., Adams, Matthew P., Babcock, Russell C., Oubelkheir, Kadija, Mongin, Mathieu, Wild-Allen, Karen A., Skerratt, Jennifer, Robson, Barbara J., Petrou, Katherina, Ralph, Peter J., O’Brien, Katherine R., Carter, Alex B., Jarvis, Jessie C., and Rasheed, Michael A. (2016) A biophysical representation of seagrass growth for application in a complex shallow-water biogeochemical model. Ecological Modelling, 325. pp. 13-27.

Okubo, Nami, Hayward, David C., Foret, Sylvain, and Ball, Eldon E. (2016) A comparative view of early development in the corals Favia lizardensis, Ctenactis echinata, and Acropora millepora - morphology, transcriptome, and developmental gene expression. BMC Evolutionary Biology, 16. 48. pp. 1-12.

Sheaves, M., Baker, R., McLeod, I., Abrantes, K., Wani, J., and Barnett, A. (2016) The conservation status of Niugini black bass: a world-renowned sport fish with an uncertain future. Fisheries Management and Ecology, 23 (3-4). pp. 243-252.

Madin, Joshua S., Anderson, Kristen D., Andreasen, Magnus Heide, Bridge, Tom C.L., Cairns, Stephen d., Connolly, Sean R., Darling, Emily S., Diaz, Marcela, Falster, Daniel S., Franklin, Erik C., Gates, Ruth, Hoogenboom, Mia O., Huang, Danwei, Keith, Sally A., Kosnik, Matthew A., Kuo, Chao-Yang, Lough, Janice M., Lovelock, Catherine E., Luiz, Osmar, Martinelli, Julieta, Mizerek, Toni, Pandolfi, John M., Pochon, Xavier, Pratchett, Morgan S., Putnam, Hollie M., Roberts, T. Edward, Stat, Michael, Wallace, Carden C., Widman, Elizabeth, and Baird, Andrew H. (2016) The coral trait database: a curated database of trait information for coral species from the global oceans. Scientific Data, 3. 160017. pp. 1-21.

Dhanjal-adams, Kiran L., Hanson, Jeffrey O., Murray, Nicholas J., Phinn, Stuart R., Wingate, Vladimir R., Mustin, Karen, Lee, Jasmine R., Allan, James R., Cappadonna, Jessica L., Studds, Colin E., Clemens, Robert S., Roelfsema, Chris M., and Fuller, Richard A. (2016) The distribution and protection of intertidal habitats in Australia. Emu, 116 (2). pp. 208-214.

Montanari, Stefano R., Hobbs, Jean-Paul A., Pratchett, Morgan S., and Van Herwerden, Lynne (2016) The importance of ecological and behavioural data in studies of hybridisation among marine fishes. Reviews in Fish Biology and Fisheries, 26 (2). pp. 181-198.

Huveneers, Charlie, Simpfendorfer, Colin A., Kim, Susan, Semmens, Jayson M., Hobday, Alistair J., Pederson, Hugh, Stieglitz, Thomas, Vallee, Richard, Webber, Dale, Heupel, Michelle R., Peddemors, Vic, and Harcourt, Robert G. (2016) The influence of environmental parameters on the performance and detection range of acoustic receivers. Methods in Ecology and Evolution, 7 (7). pp. 825-835.

Mooney, Christopher J., and Kingsford, Michael J. (2016) The influence of salinity on box jellyfish (Chironex fleckeri, Cubozoa) statolith elemental chemistry. Marine Biology, 163 (103). pp. 1-13.

Wada, Naohisa, Kawamoto, Tadafumi, Sato, Yui, and Mano, Nobuhiro (2016) A novel application of a cryosectioning technique to undecalcified coral specimens. Marine Biology, 163. 117.

Roberts, T. Edward, Bridge, Thomas C., Caley, M. Julian, and Baird, Andrew H. (2016) The point count transect method for estimates of biodiversity on coral reefs: improving the sampling of rare species. PLoS One, 11 (3). e0152335. pp. 1-10.

DiBattista, Joseph D., Roberts, May B., Bouwmeester, Jessica, Bowen, Brian W., Coker, Darren J., Lozano-Cortés, Diego F., Choat, J. Howard, Gaither, Michelle R., Hobbs, Jean-Paul A., Khalil, Maha T., Kochzius, Marc, Myers, Robert F., Paulay, Gustav, Robitzch, Vanessa S.N., Saenz-Agudelo, Pablo, Salas, Eva, Sinclair-Taylor, Tane H., Toonen, Robert J., Westneat, Mark W., Williams, Suzanne T., and Berumen, Michael L. (2016) A review of contemporary patterns of endemism for shallow water reef fauna in the Red Sea. Journal of Biogeography, 43 (3). pp. 423-439.

Mohamed, A.R., Cumbo, V., Harii, S., Shinzato, C., Chan, C.X., Ragan, M.A., Bourne, D.G., Willis, B.L., Ball, E.E., Satoh, N., and Miller, D.J. (2016) The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome. Molecular Ecology, 25 (13). pp. 3127-3141.

van de Pol, Martijn, Ens, Bruno J., Heg, Dik, Brouwer, Lyanne, Krol, Johan, Maier, Martin, Exo, Klaus-Michael, Oosterbeek, Kees, Lok, Tamar, Eising, Corine M., and Koffijberg, Kees (2010) Do changes in the frequency, magnitude and timing of extreme climatic events threaten the population viability of coastal birds? Journal of Applied Ecology, 47 (4). 11. pp. 720-730.

van de Pol, Martijn, Vindenes, Y., Saether, B.-E., Engen, S., Ens, B.J., Oosterbeek, K., and Tinbergen, J.M. (2010) Effects of climate change and variability on population dynamics in a long-lived shorebird. Ecology, 91. pp. 1192-1204.

van de Pol, Martijn, Oosterbeek, Kees, Rutten, Anne L., Ens, Bruno J., Tinbergen, Joost M., and Verhulst, Simon (2009) Biometric sex discrimination is unreliable when sexual dimorphism varies within and between years: an example in Eurasian Oystercatchers Haematopus ostralegus. Ibis, 151 (1). pp. 171-180.

van de Pol, Martijn, Ens, Bruno J., Oosterbeek, Kees, Brouwer, Lyanne, Verhulst, Simon, Tinbergen, Joost M., Rutten, Anne L., and De Jonge, Martin (2009) Oystercatchers' bill shapes as a proxy for diet specialization: more differentiation than meets the eye. Ardea, 97 (3). pp. 335-346.

van de Pol, Martijn, Pen, Ido, Heg, Dik, and Weissing, Franz J. (2007) Variation in habitat choice and delayed reproduction: adaptive queuing strategies or individual quality differences? American Naturalist, 170 (4). pp. 530-541.

Bruinzeel, Leo W., van de Pol, Martijn, and Trierweiler, Christiane (2006) Competitive abilities of oystercatchers (Haematopus ostralegus) occupying territories of different quality. Journal of Ornithology, 147. pp. 457-463.

van de Pol, Martijn, Bruinzeel, Leo W., Heg, Dik, Van der Jeugd, Henk P., and Verhulst, Simon (2006) Journal of Animal Ecology Journal of Animal Ecology Free Access A silver spoon for a golden future: long-term effects of natal origin on fitness prospects of oystercatchers (Haematopus ostralegus). Journal of Animal Ecology, 75 (2). pp. 616-626.

Bruinzeel, Leo W., and van de Pol, Martijn (2004) Site attachment of floaters predicts success in territory acquisition. Behavioral Ecology, 15 (2). pp. 290-296.

Bruinzeel, Leo, and van de Pol, Martijn (2003) Population decline of Oystercatchers on Schiermonnikoog. Limosa, 76 (1). 25 - 26.

Ens, Bruno, Berrevoets, Cor, Bruinzeel, Leo, Bult, Tammo, Haanstra, Lieuwe, Hulscher, Jan, Koks, Ben, van de Pol, Martijn, Rappoldt, Kees, Teunissen, Wolf, and Verhulst, Simon (2003) Synthesis: what caused the current decline of Oystercatchers in the Netherlands? / Synthese: wat veroorzaakt de huidige achteruitgang van Scholeksters in Nederland? Limosa, 76 (1). 34 - 38.

Hutchinson, N., and Williams, Gray A. (2003) An assessment of variation in molluscan grazing pressure on Hong Kong rocky shores. Marine Biology, 142. pp. 495-507.

Book Chapter

Pratchett, Morgan S., Chandler, Josie F., Choukroun, Severine M., Doll, Peter C., Lang, Bethan J., Kwong, Sarah, Chen, Carla C.M., Emslie, Mike J., Caballes, Ciemon F., Uthicke, Sven, and Matthews, Sam A. (2024) Biophysical Processes Involved in the Initiation and Spread of Population Irruptions of Crown-of-Thorns Starfish on the Great Barrier Reef. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Oceanographic Processes of Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, Florida, USA, pp. 290-305.

Duke, Norman C., Canning, Adam D., and Mackenzie, Jock R. (2024) More intense severe tropical cyclones in recent decades cause greater impacts on mangroves bordering Australia’s Great Barrier Reef. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, Florida, USA, pp. 226-253.

Gleadall, Ian G., Che, Leo J., and Hutchinson, Neil (2024) ‘Octopus’ parvus, bean octopus. In: Rosa, Rui, Gleadall, Ian, Pierce, Graham, and Villanueva, Roger, (eds.) Octopus Biology and Ecology. Academic Press, London, United Kingdom, pp. 281-310.

Schunter, Celia, Donelson, Jennifer M., Munday, Philip L., and Ravasi, Timothy (2023) Resilience and Adaptation to Local and Global Environmental Change. In: Laudet, Vincent, and Ravasi, Timothy, (eds.) Evolution, Development and Ecology of Anemonefishes: Model Organisms for Marine Science. CRC Press, Boca Raton, Florida, USA, pp. 253-273.

Ross, Pauline M., Scanes, Elliot, Byrne, Maria, Ainsworth, Tracy, Donelson, Jennifer M., Foo, Shawna A., Hutchings, Pat, Thiyagarajan, Vengatesen, and Parker, Laura M. (2023) Surviving the Anthropocene: the resilience of marine animals to climate change. In: Hawkins, S.J., Todd, P.A., Russell, B.D., Lemasson, A.J., Allcock, A.L., Byrne, M., Firth, L.B., Lucas, C.H., Marzinelli, E.M., Mumby, P.J., Sharples, J., Smith, I.P., and Swearer, S.E., (eds.) Oceanography and Marine Biology: An Annual Review. Taylor & Francis, pp. 35-80.

Rummer, Jodie L., and Illing, Björn (2022) Chapter 7 - Coral reef fishes in a multi-stressor world. In: Strailey, Katherine K., and Suski, Cory D., (eds.) Fish Physiology. Elsevier, Cambridge, United States, pp. 325-391.

Walker, Sophie, Waltham, Nathan, Buelow, Christina, and Iles, Jordan (2022) Coastal habitat restoration, invasive species and remote monitoring solutions. In: Humphreys, John, and Little, Sally, (eds.) Challenges in Estuarine and Coastal Science: Estuarine and Coastal Sciences Association 50th anniversary volume. Pelagic Publishing, Exeter, UK, pp. 160-176.

Able, Kenneth W., Simenstad, Charles A., Strydom, Nadine A., Bradley, Michael, and Sheaves, Marcus (2022) Habitat Use and Connectivity. In: Whitfield, Alan K., Able, Kenneth W., Blaber, Stephen J.M., and Elliott, Michael, (eds.) Fish and Fisheries in Estuaries: A Global Perspective. Wiley-Blackwell, pp. 188-254.

Tang, A.M., Wolanski, E., Choukroun, S., Nguyen, H.N., Dinh, V.N., and Huynh, D.V.K. (2022) L'Impact écologique des activités économiques en mer de Chine méridionale. In: Journoud, Pierre, (ed.) La mer de Chine méridionale au prisme du soft power: Nouvelles approches franco-vietnamiennes d'un vieux conflit maritime. Editions L'Harmattan, Paris, France, pp. 341-351.

Jones, Geoffrey P., Srinivasan, Maya, Galbraith, Gemma F., Berumen, Michael L., and Planes, Serge (2022) Saving Nemo: Extinction Risk, Conservation Status, and Effective Management Strategies for Anemonefishes. In: Laudet, Vincent, and Ravasi, Timothy, (eds.) Evolution, Development and Ecology of Anemonefishes. CRC Press, Boca Raton, FL, USA, pp. 285-298.

Duke, Norman C., Hutley, Lindsay B., Mackenzie, Jock R., and Burrows, Damien (2021) Processes and factors driving change in mangrove forests: an evaluation based on the mass dieback event in Australia’s Gulf of Carpentaria. In: Canadell, Josep G., and Jackson, Robert B., (eds.) Ecosystem Collapse and Climate Change. Ecological Studies, 241 . Springer International Publishing, Cham, Switzerland, pp. 221-264.

Johnson, Johanna E., Allain, Valerie, Basel, Britt, Bell, Johann D., Chin, Andrew, Dutra, Leo X. C., Hooper, Eryn, Loubser, David, Lough, Janice, Moore, Bradley R., and Nicol, Simon (2020) Impacts of climate change on marine resources in the Pacific Island region. In: Kumar, Lalit, (ed.) Climate Change and Impacts in the Pacific. Springer Climate . Springer, Cham, Switzerland, pp. 359-402.

Matthews, S. A., Mellin, C., and Pratchett, Morgan S. (2020) Larval connectivity and water quality explain spatial distribution of crown-of-thorns starfish outbreaks across the Great Barrier Reef. In: Riegl, Bernhard M., (ed.) Population Dynamics of the Reef Crisis. Advances in Marine Biology, 87 (1). Elsevier, Amsterdam, NDL, pp. 223-258.

McLeod, Ian Michael, zu Ermgassen, Philine S.E., Gillies, Chris L., Hancock, Boze, and Humphries, Austin (2019) Can bivalve babitat restoration improve degraded estuaries? In: Wolanski, Eric, Day, John W., Elliott, Michael, and Ramachandran, Ramesh, (eds.) Coasts and Estuaries: the future. Elsevier, Oxford, UK, pp. 427-442.

Gershwin, L., and Kingsford, M. J. (2019) Pelagic jellyfishes and comb jellies. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: Biology, Environment and Management. CSIRO Publishing, Clayton South, VIC, Australia, pp. 247-256.

Kingsford, M. J., and Mckinnon, A. D. (2019) Plankton. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) Great Barrier Reef: Biology, Environment and Management. CSIRO Publishing, Clayton South, VIC, Australia, pp. 191-206.

Heupel, Michelle R., Kessel, Steven T., Matley, Jordan K., and Simpfendorfer, Colin A. (2018) Acoustic telemetry. In: Carrier, Jeffrey C., Heithaus, Michael R., and Simpfendorfer, Colin A., (eds.) Shark Research: emerging technologies and applications for the field and laboratory. Marine Biology Series . CRC Press, Boca Raton, FL, USA, pp. 133-156.

Booth, David J., Poloczanska, Elvira, Donelson, Jennifer M., García Molinos, Jorge, and Burrows, Michael (2018) Biodiversity and climate change in the oceans. In: Phillips, Bruce F., and Perez-Ramirez, Monica, (eds.) Climate Change Impacts on Fisheries and Aquaculture: a global analysis. Wiley-Blackwell, Hoboken, NJ, USA, pp. 63-89.

Macreadie, Peter I., Sullivan, Brooke, Evans, Suzanna M., and Smith, Timothy M. (2018) Biogeography of Australian seagrasses: NSW, Victoria, Tasmania and Temperate Queensland. In: Larkum, Anthony W.D., Kendrick, Gary A., and Ralph, Peter J., (eds.) Seagrasses of Australia: Structure, Ecology and Conservation. Springer, Cham, Switzerland, pp. 31-59.

Chin, Andrew, and Pecl, Gretta (2018) Citizen science in shark and ray research and conservation: strengths, opportunities, considerations and pitfalls. In: Carrier, Jeffrey C., Heithaus, Michael R., and Simpfendorfer, Colin A., (eds.) Shark Research: emerging technologies and applications for the field and laboratory. Marine Biology Series . CRC Press, Boca Raton, FL, USA, pp. 299-317.

Emslie, Michael J., and Pratchett, Morgan S. (2018) Differential vulnerabilities of parrotfishes to habitat degradation. In: Hoey, Andrew S., and Bonaldo, Roberta M., (eds.) Biology of Parrotfishes. Taylor & Francis, Boca Raton, FL, USA, pp. 355-382.

Hein, Margaux Y., Couture, Fanny, and Scott, Chad M. (2018) Ecotourism and coral reef restoration: case studies from Thailand and the Maldives. In: Prideaux, Bruce, and Pabel, Anja, (eds.) Coral Reefs: tourism, conservation and management. Routledge, Abingdon, UK, pp. 137-150.

Pratchett, M.S., Thompson, C.A., Hoey, A.S., Cowman, P.F., and Wilson, S.K. (2018) Effects of coral bleaching and coral loss on the structure and function of reef fish assemblages. In: van Oppen, Madeleine J.H., and Lough, Janice M., (eds.) Coral Bleaching: patterns, processes, causes and consequences. Ecological Studies, 233 . Springer, Cham, Switzerland, pp. 265-293.

Le Port, Agnes, Bakker, Judith, Cooper, Madalyn K., Huerlimann, Roger, and Mariani, Stefano (2018) Environmental DNA (eDNA): a valuable tool for ecological inference and management of sharks and their relatives. In: Carrier, Jeffrey C., Heithaus, Michael R., and Simpfendorfer, Colin A., (eds.) Shark Research: emerging technologies and applications for the field and laboratory. Marine Biology Series . CRC Press, Boca Raton, FL, USA, pp. 255-283.

Hoey, Andrew S. (2018) Feeding in Parrotfishes: the influence of species, body size, and temperature. In: Hoey, Andrew S., and Bonaldo, Roberta M., (eds.) Biology of Parrotfishes. Taylor & Francis, Boca Raton, FL, USA, pp. 119-133.

Burkepile, Deron E., Rasher B., Douglas, Adam, Thomas C., Hoey, Andrew S., and Hay, Mark E. (2018) Functional variation among parrotfishes: are they complementary or redundant? In: Hoey, Andrew S., and Bonaldo, Roberta M., (eds.) Biology of Parrotfishes. Taylor & Francis, Boca Raton, FL, USA, pp. 134-160.

Rigby, Cassandra L., Foley, William J., and Simpfendorfer, Colin A. (2018) Near-infrared spectroscopy for shark ageing and biology. In: Carrier, Jeffrey C., Heithaus, Michael R., and Simpfendorfer, Colin A., (eds.) Shark Research: emerging technologies and applications for the field and laboratory. Marine Biology Series . CRC Press, Boca Raton, FL, USA, pp. 201-217.

Hoey, Andrew S., Taylor, Brett M., Hoey, Jessica, and Fox, Rebecca J. (2018) Parrotfishes, are we still scraping the surface? Emerging topics and future research directions. In: Hoey, Andrew S., and Bonaldo, Roberta M., (eds.) Biology of Parrotfishes. Taylor & Francis, Boca Raton, FL, USA, pp. 407-416.

Sherman, Craig C.D., Smith, Timothy M., York, Paul H., Jarvis, Jessie C., Ruiz-Montoya, Leonardo, and Kendrick, Gary A. (2018) Reproductive, dispersal and recruitment strategies in Australian seagrasses. In: Larkum, Anthony A.W., Kendrick, Gary A., and Ralph, Peter J., (eds.) Seagrasses of Australia: Structure, Ecology and Conservation. Springer, Cham, Switzerland, pp. 213-256.

Hoey, Andrew S., Berumen, Michael L., Bonaldo, Roberta M., Burt, John A., Feary, David A., Ferreira, Carlos E.L., Floeter, Sergio R., and Nakamura, Yohei (2018) The ecology of parrotfishes in marginal reef systems. In: Hoey, Andrew S., and Bonaldo, Roberta M., (eds.) Biology of Parrotfishes. Taylor & Francis, Boca Raton, FL, USA, pp. 276-301.

Duke, Norman C. (2017) Mangrove floristics and biogeography revisited: further deductions from biodiversity hot spots, ancestral discontinuities and common evolutionary processes. In: Rivera-Monroy, Victor H., Lee, Shing Yip, Kristensen, Erik, and Twilley, Robert R., (eds.) Mangrove Ecosystems: A Global Biogeographic Perspective - Structure, Function and Services. Springer International Publishing, Cham, Switzerland, pp. 17-53.

Pratchett, Morgan S., Hoey, Andrew S., Wilson, Shaun K., Hobbs, Jean-Paul A., and Allen, Gerald R. (2016) Habitat-use and specialisation among coral reef damselfishes. In: Frédérich, Bruno, and Parmentier, Eric, (eds.) Biology of Damselfishes. Taylor & Francis, Boca Raton, FL, USA, pp. 84-121.

Simpson, Stephen D., Radford, Andrew N., Holles, Sophie , Ferrari, Maud C.O., Chivers, Douglas P., McCormick, Mark I., and Meekan, Mark G. (2016) Small-boat noise impacts natural settlement behavior of coral reef fish larvae. In: Popper, Arthur N. , and Hawkins, Anthony, (eds.) The Effects of Noise on Aquatic Life II. Advances in Experimental Medicine and Biology, 875 . Springer, New York, NY, USA, pp. 1041-1048.

Ens, Bruno, van de Pol, Martijn, and Goss-Custard, John D. (2014) The study of career decisions: Oystercatchers as social prisoners. In: Naguib, Marc, Barrett, Louise, Brockmann, H. Jane, Healy, Sue, Mitani, John C., Roper, Timothy J., and Simmons, Leigh W., (eds.) Advances in the Study of Behavior. Elsevier, Kidlington, Oxford, UK, pp. 343-420.

Report

Duke, Norman, and Lee, Shing Yip (2024) 2.4. The diversity of mangroves. Towards an authoritative list of the world’s mangrove plants. Report Section. Global Mangrove Alliance.

McKenna, S.A., Concannon, T.G., Van de Wetering, C., and Rasheed, M.A. (2024) Bowen - McCanes Bay / Port Dennison Seagrass Assessments June 2024. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S., and Van de Wetering, C. (2024) Marine Benthic Habitat Assessment – Half Tide Tug Harbour, December 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S.A., Concannon, T., Reason, C.L., and Rasheed, M.A. (2024) Port of Abbot Point Long-Term Seagrass Monitoring Program 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S.A., Concannon, T.G., and Hoffmann, L. (2024) Port of Townsville Seagrass Monitoring Program: Brief Report May 2024. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Tol, S.J., Coles, R.G., Shepherd, L., Scott, A., Hoffmann, L., Leeson, P., Ekins, M, Clarke, M., Rasheed, M.A., and York, P. (2023) Benthic Habitat Mapping in the Central Coral Sea Marine Park: Preliminary voyage report for December 2022 survey. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Hoey, A.S., Burn, D., Chandler, J.F., Huertas, V., Cresswell, B.J., Galbraith, G.F., and McClure, E.C. (2023) Coral Sea Marine Park Coral Reef Health Survey 2023. Report. Parks Australia, Townsville, QLD, Australia.

McKenna, S., and Firby, L. (2023) Marine Benthic Habitat Assessment – Hay Point Coal Terminal Berth 1 Extension, January 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S., and Firby, L. (2023) Marine Plant Survey – Northern Breakwater Rehabilitation Project – Port of Mackay, January 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S.A. (2023) Port of Townsville Channel Upgrade Project: Capital Dredge Footprint Seagrass Survey – Updated August 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S. (2023) Port of Townsville Eastern Breakwater Marine Plant Assessment. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Carter, A., Allan, S., Scott, A., Rasheed, M.A., and Torres Strait Regional Authority Land and Sea Rangers (2023) Torres Strait Seagrass Report Card 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Cleguer, C., and Marsh, H. (2023) An inventory of dugong aerial surveys in Australia. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

McKenna, S., Carter, A., Smit, N., McMahon, K., and Coles, R. (2023) An inventory of northern Australia’s seagrass data: research report Project 1.32a. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Hoey, A.S., McClure, E.C., Burn, D., Chandler, J.F., Huertas Martin, V., Cresswell, B., Galbraith, G., and Pratchett, M.S. (2022) Coral Sea Marine Park Coral Reef Health Survey 2022. Report. Parks Australia, Townsville, QLD, Australia.

Galbraith, G., McClure, E.C., Barnett, A., Cresswell, B., Burn, D., Huertas Martin, V., Pratchett, M., and Hoey, A. (2022) Diving into The Deep: The Unique Habitats of The Coral Sea Marine Park. Report. Parks Australia, Townsville, QLD, Australia.

Chartrand, K.M., Carter, A.B., Hoffmann, L., and Smith, T. (2022) Progress Report: MARRS Monitoring Trial at Moore Reef – June 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Pratchett, Morgan S., Caballes, Ciemon F., Burn, Deborah, Doll, Peter C., Chandler, Josie F., Doyle, Jason R., and Uthicke, Sven (2022) Scooter-assisted large area diver-based (SALAD) visual surveys to test for renewed outbreaks of crown-of-thorns starfish (Acanthaster cf. solaris) in the northern Great Barrier Reef. Report. Australian Government.

Hoey, A.S., Harrison, H., McClure, E.C., Burn, D., Barnett, A., Cresswell, B., Doll, P.C., Galbraith, G., and Pratchett, M.S. (2021) Coral Sea Marine Park Coral Reef Health Survey 2021: Report on reef surveys February 2021. Report. Parks Australia, Townsville, QLD, Australia.

Chartrand, K.N., Hoffmann, L.R., Ayling, A., and Ayling, T. (2021) Port of Abbot Point Ambient Coral Monitoring Surveys: 2020-2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Chartrand, K.M., Hoffmann, L.R., Ayling, A., and Ayling, T. (2021) Ports of Mackay and Hay Point Ambient Coral Monitoring Surveys: 2020-2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

McLeod, Ian M., Bourne, David, Ceccarelli, Daniela M., Boström-Einarsson, Lisa, Cook, Nathan, Fulton, Stella E., Hancock, Boze, Harrison, Peter, Hein, Margaux, Le Port, Agnès, Paewai-Higgins, Roma, Smith, Hillary A., and Smith, Adam (2020) Best practice coral restoration for the Great Barrier Reef. Report. Reef and Rainforest Research Centre Limited (RRRC), Cairns, QLD, Australia.

Chartrand, K.M., Fletcher-Leonhardt, J.D., and Rasheed, M.A. (2020) Green Island Jetty Repairs Coral Monitoring Report – December 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Duke, Norman C., and Mackenzie, Jock (2018) ECY Report 2017. Final report: East Cape York shoreline environmental surveys. External Commissioned Report. James Cook University, Townsville, QLD, Australia.

Johnson, Johanna, Betram, Ian, Chin, Andrew, Moore, Bradley, Pratchett, Morgan, Welch, David, Williams, Ashley, Bell, Johann, and Govan, Hugh (2018) Effects of climate change on fish and shellfish relevant to Pacific Islands, and the coastal fisheries they support. Report. Centre for Environment, Fisheries and Aquaculture Science, Suffolk, UK.

Rasheed, M.A., O'Grady, D., and Scott, E. (2016) Dugong Feeding Ecology and Habitat Use on Intertidal Banks of Port Curtis and Rodds Bay – Interim Progress Report 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Oosterbeek, K.H., van de Pol, Martijn, De Jonge, Martin L., Smit, Cor J., and Ens, Bruno J. (2006) Scholekster populatie studies - Bijdrage aan de zoektocht naar de oorzaken van de sterke achteruitgang van de Scholekster in het Waddengebied / [Identifying causes of the strong decline in oystercatcher population numbers in the Wadden Sea estuary]. Report. Wageningen Environmental Research, Wageningen, The Netherlands.

Conference Item

Hermanto, B., Bourne, D.G., and Smith, H. (2023) Comparative image analysis approaches to assess ecological effects of macroalgal removal on inshore reefs of Magnetic Island, Australia. In: IOP Conference Series: Earth and Environmental Science (1137) 012052. From: MarBioUtiCoM: International Seminar on Marine Biodiversity, Utilization, Conservation and Management, 8-9 August 2022, Online.

Sahri, Achmad, Maters, Floor, Putra, Mochamad, Mustika, Putu, Kreb, Danielle, and Van Lammeren, Ron J. (2023) Predicting cetacean habitats beyond surveyed regions in Indonesian waters: Species distribution model transferability may not always be preferable. In: IOP Conference Series: Earth and Environmental Science (1276) 012054. From: th GEOICON 2023: Geomatics International Conference, 27 July 2023, Surabaya, Indonesia.

Cameron, Kerry, Chartrand, Katie, Cameron, Grant, Miller, Ross, Shepherd, Lloyd, Concannon, Tess, and Singleton, Tarquin (2023) Stay or spray? Evaluating larval delivery strategies in a multi-partner coral reef restoration project across Gunggandji and Yirrganydji Sea Country. In: [Presented at the Australian Marine Sciences Association Conference 2023]. From: Australian Marine Sciences Association Conference 2023: Science in Sea Country, 2-7 July 2023, Gold Coast, QLD, Australia.

York, Paul, Coles, Rob, Sankey, Tonia, Omundsen, Sarah, Rasheed, Michael, and Sheaves, Marcus (2016) Assessing the ecological and economic impacts of a drastic decline in tropical seagrass meadows on fish and prawn assemblages. In: 12th International Seagrass Biology Workshop Programme. pp. 63-64. From: ISBW12: 12th International Seagrass Biology Workshop, 16-21 October 2016, Nant Gwrtheyrn, Wales.

Carter, A.B., Coles, R.G., McKenna, S.A., and Rasheed, M.A. (2016) A spatial management tool for seagrasses in the Great Barrier Reef World Heritage Area. In: International Coral Reef Symposium: abstract book. 27805. p. 52. From: 13th International Coral Reef Symposium, 19-24 June 2016, Honolulu, HI, USA.

York, Paul, Smith, Timothy, Thiel, Martin, Broitman, Bernardo, Hays, Graeme, van Sebille, Erik, Putman, Nathan, Macreadie, Peter, and Sherman, Craig (2014) The South American seagrass Zostera chiliensis: endangered or invasive? In: 11th International Seagrass Biology Workshop Abstracts. From: ISBW11: 11th International Seagrass Biology Workshop, 6-10 November 2014, Sanya, China.

Book

Duke, Norman C., Virly, Sabrina, and Tracey, Dieter (2023) New Caledonian mangroves: A treasure to protect. MangroveWatch Publications, Currumbin, Queensland, Australia.

Thesis

Lutzenkirchen, Lucas Leo (2024) Upscaling ecosystem studies on coral reefs. Masters (Research) thesis, James Cook University.

Lubitz, Nicolas (2023) Context-dependent movement behaviour in marine predators: the causes and consequences of behavioural variability. PhD thesis, James Cook University.

Marangon, Emma (2023) Coral reef symbioses under a changing climate: an integrative approach. PhD thesis, James Cook University.

Blandford, Makeely Isabel (2023) Effects of habitat fragmentation on coral-associated fish assemblages. PhD thesis, James Cook University.

Yau, Geoffrey D. (2023) Exploring the potential function of dimethylsulfoniopropionate and its by-product acrylate within the coral holobiont. Masters (Research) thesis, James Cook University.

Lang, Bethan Jade (2023) Impacts of ocean warming on the Pacific crown-of-thorns starfish (Acanthaster cf.solaris). PhD thesis, James Cook University.

Kanno, Shiori (2023) Life history and spatial ecology of sharks and rays in mangrove habitats. PhD thesis, James Cook University.

Nielsen, Josephine Jacoba Valentin (2023) Natural variation in heat tolerance of corals on the Great Barrier Reef. PhD thesis, James Cook University.

Doll, Peter C. (2023) Processes and patterns in larval settlement of crown-of-thorns starfish (Acanthaster cf. solaris). PhD thesis, James Cook University.

Aston, Eoghan (2023) Quantifying and assessing coral reef structural complexity and its role in ecological processes and dynamics using photogrammetry. PhD thesis, James Cook University.

Wheeler, Carolyn Rose (2023) Quantifying life history energetics of an oviparous elasmobranch subject to future warming water. PhD thesis, James Cook University.

Thompson, Cassandra Ann (2023) Sub-lethal effects of coral loss and habitat degradation on coral reef fishes with specific emphasis on Chaetodon butterflyfishes. Masters (Research) thesis, James Cook University.

Cane, Jasmine S. (2023) The effect of cross-generational plasticity on the development of coral reef fish under multiple environmental stressors. Masters (Research) thesis, James Cook University.

Fisher, Eric E. (2023) The physical and biological processes driving fish aggregation behaviour. PhD thesis, James Cook University.

Campbell, Matthew John (2022) Assessing ecological risk posed to common rays by prawn trawling. PhD thesis, James Cook University.

Saper, Julia (2022) Augmented coral health: linking heterotrophic diets to the acquisition of probiotics in symbiotic scleractinia. Masters (Research) thesis, James Cook University.

D'Alberto, Brooke Minetta (2022) Conservation biology of wedgefishes (Family Rhinidae) and giant guitarfishes (Family Glaucostegidae). PhD thesis, James Cook University.

Miller, Michaela E. (2022) Ecological fate of microplastics in a tropical marine environment. PhD thesis, James Cook University.

Fulton, Stella Elaine (2022) Effects of macroalgal removal on inshore coral reef communities and sedimentation dynamics. Masters (Research) thesis, James Cook University.

Salamena, Gerry Giliant (2022) Flushing processes in the shallow-silled tropical fjord of Ambon Bay, eastern Indonesia. PhD thesis, James Cook University.

Panero, Marta (2022) Gorgonian spatial distributions, ecological interactions with fish assemblages and responses to their decline in health. Masters (Research) thesis, James Cook University.

Hillcoat, Kyle Baron (2022) Latitudinal variations in the age-based demography of two large predatory reef fishes (Lutjanus malabaricus and Lutjanus sebae) in Queensland, Australia. PhD thesis, James Cook University.

Cooper, Madalyn K. (2022) Resolving the global distribution of sawfishes (family Pristidae) using environmental DNA. PhD thesis, James Cook University.

Tebbett, Sterling Bryn (2022) The functioning of future coral reefs: fishes, sediments and productivity. PhD thesis, James Cook University.

Sambrook, Katie (2021) Beyond the reef: the influence of seascape structure on the composition and function of tropical fish communities. PhD thesis, James Cook University.

Herrera Acosta, César Augusto (2021) Biodiversity beyond species census: assessing organisms' traits and functional attributes using computer vision. PhD thesis, James Cook University.

Kuek, Felicity W.I. (2021) Dimethylsulphoniopropionate (DMSP) metabolism within the coral holobiont. PhD thesis, James Cook University.

Hannan, Kelly D. (2021) Effects of diel pCO₂ fluctuations on coral reef fishes now and into the future. PhD thesis, James Cook University.

Wilkinson, Adam (2021) Investigating potential co-factors of Fibropapillomatosis development in Chelonia mydas of the Great Barrier Reef. PhD thesis, James Cook University.

Boote, Chloë Georgina (2021) Molecular insights into a novel coral model, Heliofungia actiniformis. PhD thesis, James Cook University.

Sievers, Katie T. (2021) Non-reef habitats in a tropical seascape: the effects of the surrounding seascape on coral reef fishes. PhD thesis, James Cook University.

Spinks, Rachel K. (2021) Phenotypic plasticity to warming in coral reef fishes: the importance of sex and exposure timing within and between generations. PhD thesis, James Cook University.

Santana, Marina F. M. (2021) Presence, abundance and effects of microplastics on the Great Barrier Reef. PhD thesis, James Cook University.

Rowley, Olivia C. (2021) Rethinking biological tools for logistically difficult species: a case study - the Irukandji (Carukia barnesi) and Box Jellyfish (Chironex fleckeri). PhD thesis, James Cook University.

Hemingson, Christopher Rae (2021) The colours of coral reef fishes. PhD thesis, James Cook University.

Galbraith, Gemma Frances (2021) The ecology of fishes on submerged pinnacle coral reefs. PhD thesis, James Cook University.

Motson, Katie (2021) The effect of habitat degradation on parasitism of coral reef fishes. PhD thesis, James Cook University.

McMahon, Shannon J. (2021) The effects of climate change on the growth and physiology of reef snappers. PhD thesis, James Cook University.

Velasquez Jimenez, Laura Marcela (2021) The effects of vessel noise on the antipredator behaviour of juvenile reef fishes. PhD thesis, James Cook University.

Huertas Martín, Víctor (2021) The trophic ecology of reef fishes: the cnidarian challenge. PhD thesis, James Cook University.

Crook, Kevin Alexander (2020) Assessing the functional roles of rays in coastal sandflats. PhD thesis, James Cook University.

Schlaefer, Jodie Anne (2020) Determining the population structures of cubozoan jellyfishes with biophysical modelling. PhD thesis, James Cook University.

Burn, Deborah (2020) Differential susceptibility of corals to major versus routine disturbances in Australia's Coral Sea. Masters (Research) thesis, James Cook University.

Bouyoucos, Ian Alexander (2020) Ecological energetics of climate change for tropical sharks. PhD thesis, James Cook University.

Schlaff, Audrey M. (2020) Multi-scale patterns in movement and space use of sharks on inshore reefs. PhD thesis, James Cook University.

Lowe, Jake R. (2020) Relative effects of environmental variation and fishing on the demography and ecology of tropical wrasses. PhD thesis, James Cook University.

Tol, Samantha (2020) Relative importance of different seagrass re-establishment strategies in tropical Queensland, Australia. PhD thesis, James Cook University.

Streit, Robert Paul (2020) Space use by fishes on coral reefs: establishment, fidelity and reef resilience. PhD thesis, James Cook University.

Wilmes, Jennifer Christina (2020) Spatial and temporal variation in the demography of early-stage juvenile Pacific crown-of-thorns starfish (Acanthaster cf. solaris) from Australia's Great Barrier Reef. PhD thesis, James Cook University.

Tsai, Cheng-Han (2020) Variation in relative species abundance of reef fishes: drivers and ecosystem impacts. PhD thesis, James Cook University.

Scott, Abigail Lucy (2020) The role of herbivores as ecosystem engineers in Great Barrier Reef seagrass meadows. PhD thesis, James Cook University.

van de Pol, Martijn (2006) State-dependent life-history strategies: a long-term study on Oystercatchers. PhD thesis, University of Groningen.

This list was generated on Sat Nov 23 22:37:51 2024 AEST.