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Article
Napier, Thomas, Ahn, Euijoon, Allen-Ankins, Slade, Schwarzkopf, Lin, and Lee, Ickjai (2024) Advancements in preprocessing, detection and classification techniques for ecoacoustic data: A comprehensive review for large-scale passive acoustic monitoring. Expert Systems with Applications, 252 (Part B). 124220.
Pedersen, Lucille T., Miszkiewicz, Justyna, Cheah, Lit Chien, Willis, Anna, and Domett, Kate M. (2024) Age-dependent change and intraskeletal variability in secondary osteons of elderly Australians. Journal of Anatomy, 244 (6). pp. 1078-1092.
Paris, Damien Boyd Bertrand Paul, Riddell, Pia, Joone, Carolynne, de la Rey, Morné, Ganswindt, Andre, and Paris, Monique (2024) Cold dogs: Sperm freezing, artificial insemination & non-invasive monitoring tools to facilitate a hybrid conservation management approach for endangered African wild dogs. Theriogenology Wild, 4. 100073.
Anthony, Colin J., McDermott, Grace, Lock, Colin, Miller, Therese, Bentlage, Bastian, and Raymundo, Laurie J. (2024) Depth-independent phenotypic variation of massive Porites coral color morphs. Marine Ecology, 45 (1). e12788.
Reinhold, Linda M., Wilson, David T., and Rymer, Tasmin L. (2024) Does the photoluminescence of rat fur influence interactions in the field? Australian Journal of Zoology, 71 (2). ZO23021.
Erazo-Mera, Estefania, Younes, Nicolas, Horwood, Paul, Paris, Damien, Paris, Monique, and Murray, Nicholas (2024) Forest loss during 2000–2019 in pygmy hippopotamus (Choeropsis liberiensis) habitats was driven by shifting agriculture. Environmental Conservation, 51 (1). pp. 55-63.
Gahan, James, Bellwood, David R., Bellwood, Orpha, and Schlaefer, Jodie (2024) Gelatinous versus non-gelatinous zooplankton: their value as food for planktivorous coral reef fishes. Coral Reefs, 43. pp. 243-252.
Elliott, Tammy L., Spalink, Daniel, Larridon, Isabel, Zuntini, Alexandre Rizzo, Escudero, Marcial, Hackel, Jan, Barrett, Russell L., Martín-Bravo, Santiago, Márquez-Corro, José Ignacio, Granados Mendoza, Carolina, Mashau, Aluoneswi C., Romero-Soler, Katya J., Zhigila, Daniel A., Gehrke, Berit, Andrino, Caroline Oliveira, Crayn, Darren M., Vorontsova, Maria S., Forest, Félix, Baker, William J., Wilson, Karen L., Simpson, David A., and Muasya, A. Muthama (2024) Global analysis of Poales diversification – parallel evolution in space and time into open and closed habitats. New Phytologist, 242 (2). pp. 727-743.
Postaire, Bautisse D., Devloo-Delva, Floriaan, Brunnschweiler, Juerg M., Charvet, Patricia, Chen, Xiao, Cliff, Geremy, Daly, Ryan, Drymon, J. Marcus, Espinoza, Mario, Fernando, Daniel, Glaus, Kerstin, Grant, Michael I., Hernández, Sebastián, Hyodo, Susumu, Jabado, Rima W., Jaquemet, Sébastien, Johnson, Grant, Naylor, Gavin J.P., Nevill, John E.G., Pathirana, Buddhi M., Pillans, Richard D., Smoothey, Amy F.., Tachihara, Katsunori, Tillet, Bree J., Valerio-Vargas, Jorge A., Lesturgie, Pierre, Magalon, Hélène, Feutry, Pierre, and Mona, Stefano (2024) Global genetic diversity and historical demography of the Bull Shark. Journal of Biogegoraphy, 51 (4). pp. 632-648.
Álvarez-Romero, Jorge G., Adams, Vanessa M., Ban, Natalie C., Mills, Morena, and Visconti, Piero (2024) Honoring the legacy of a conservation champion: Bob Pressey (1953-2023). Conservation Biology, 38 (1). e14168.
Yong, Jose C., Lim, Chun Hui, Jonason, Peter K., and Thomas, Andrew G. (2024) Income and sex moderate the association between population density and reproduction: A multilevel analysis of life history strategies across 23 nations. Archives of Sexual Behavior. (In Press)
Pell, T.J., McClure, E.C., Emslie, M.J., and Hoey, A.S. (2024) Limited susceptibility of Lobophora to browsing fishes on inshore reefs of the Great Barrier Reef. Coral Reefs, 43. pp. 5-17.
Ritter, Carmen J., and Bourne, David G. (2024) Marine amphipods as integral members of global ocean ecosystems. Journal of Experimental Marine Biology and Ecology, 572. 151985.
Bourne, David G., Sato, Yui, and Smith, Hillary A. (2024) Microbes guide corals looking to find a home. Trends in Microbiology, 32 (2). pp. 120-121.
Aulsebrook, Lucinda C., Wong, Bob B.M., and Hall, Matthew D. (2024) Pharmaceutical pollution alters the cost of bacterial infection and its relationship to pathogen load. Proceedings of the Royal Society of London Series B, Biological Sciences, 291 (2014). 20231273.
Zuntini, Alexandre R., Carruthers, Tom, Maurin, Olivier, Bailey, Paul C., Leempoel, Kevin, Brewer, Grace E., Epitawalage, Niroshini, Françoso, Elaine, Gallego-Paramo, Berta, McGinnie, Catherine, Negrão, Raquel, Roy, Shyamali R., Simpson, Lalita, Toledo Romero, Eduardo, Barber, Vanessa M. A., Botigué, Laura, Clarkson, James J., Cowan, Robyn S., Dodsworth, Steven, Johnson, Matthew G., Kim, Jan T., Pokorny, Lisa, Wickett, Norman J., Antar, Guilherme M., DeBolt, Lucinda, Gutierrez, Karime, Hendriks, Kasper P., Hoewener, Alina, Hu, Ai-Qun, Joyce, Elizabeth, Kikuchi, Izai A. B. S., Larridon, Isabel, Larson, Drew A., de Lírio, Elton John, Liu, Jing-Xia, Malakasi, Panagiota, Przelomska, Natalia A. S., Shah, Toral, Viruel, Juan, Allnutt, Theodore R., Ameka, Gabriel K., Andrew, Rose L., Appelhans, Marc S., Arista, Montserrat, Ariza, María Jesús, Arroyo, Juan, Arthan, Watchara, Bachelier, Julien B., Bailey, C. Donovan, Barnes, Helen F., Barrett, Matt, Barrett, Russell L., Bayer, Randall J., Bayly, Michael J., Biffin, Ed, Biggs, Nicky, Birch, Joanne L., Bogarín, Diego, Borosova, Renata, Bowles, Alexander M. C., Boyce, Peter C., Bramley, Gemma L. C., Briggs, Marie, Broadhurst, Linda, Brown, Gillian K., Bruhl, Jeremy J., Bruneau, Anne, Buerki, Sven, Burns, Edie, Byrne, Margaret, Cable, Stuart, Calladine, Ainsley, Callmander, Martin W., Cano, Ángela, Cantrill, David J., Cardinal-McTeague, Warren M., Carlsen, Mónica M., Carruthers, Abigail J. A., de Castro Mateo, Alejandra, Chase, Mark W., Chatrou, Lars W., Cheek, Martin, Chen, Shilin, Christenhusz, Maarten J. M., Christin, Pascal-Antoine, Clements, Mark A., Coffey, Skye C., Conran, John G., Cornejo, Xavier, Couvreur, Thomas L. P., Cowie, Ian D., Csiba, Laszlo, Darbyshire, Iain, Davidse, Gerrit, Davies, Nina M. J., Davis, Aaron P., van Dijk, Kor-jent, Downie, Stephen R., Duretto, Marco F., Duvall, Melvin R., Edwards, Sara L., Eggli, Urs, Erkens, Roy H. J., Escudero, Marcial, de la Estrella, Manuel, Fabriani, Federico, Fay, Michael F., Ferreira, Paola de L., Ficinski, Sarah Z., Fowler, Rachael M., Frisby, Sue, Fu, Lin, Fulcher, Tim, Galbany-Casals, Mercè, Gardner, Elliot M., German, Dmitry A., Giaretta, Augusto, Gibernau, Marc, Gillespie, Lynn J., González, Cynthia C., Goyder, David J., Graham, Sean W., Grall, Aurélie, Green, Laura, Gunn, Bee F., Gutiérrez, Diego G., Hackel, Jan, Haevermans, Thomas, Haigh, Anna, Hall, Jocelyn C., Hall, Tony, Harrison, Melissa, Hatt, Sebastian A., Hidalgo, Oriane, Hodkinson, Trevor R., Holmes, Gareth D., Hopkins, Helen C. F., Jackson, Christopher J., James, Shelley A., Jobson, Richard W., Kadereit, Gudrun, Kahandawala, Imalka M., Kainulainen, Kent, Kato, Masahiro, Kellogg, Elizabeth A., King, Graham J., Klejevskaja, Beata, Klitgaard, Bente B., Klopper, Ronell R., Knapp, Sandra, Koch, Marcus A., Leebens-Mack, James H., Lens, Frederic, Leon, Christine J., Léveillé-Bourret, Étienne, Lewis, Gwilym P., Li, De-Zhu, Li, Lan, Liede-Schumann, Sigrid, Livshultz, Tatyana, Lorence, David, Lu, Meng, Lu-Irving, Patricia, Luber, Jaquelini, Lucas, Eve J., Luján, Manuel, Lum, Mabel, Macfarlane, Terry D., Magdalena, Carlos, Mansano, Vidal F., Masters, Lizo E., Mayo, Simon J., McColl, Kristina, McDonnell, Angela J., McDougall, Andrew E., McLay, Todd G. B., McPherson, Hannah, Meneses, Rosa I., Merckx, Vincent S. F. T., Michelangeli, Fabián A., Mitchell, John D., Monro, Alexandre K., Moore, Michael J., Mueller, Taryn L., Mummenhoff, Klaus, Munzinger, Jérôme, Muriel, Priscilla, Murphy, Daniel J., Nargar, Katharina, Nauheimer, Lars, Nge, Francis J., Nyffeler, Reto, Orejuela, Andrés, Ortiz, Edgardo M., Palazzesi, Luis, Peixoto, Ariane Luna, Pell, Susan K., Pellicer, Jaume, Penneys, Darin S., Perez-Escobar, Oscar A., Persson, Claes, Pignal, Marc, Pillon, Yohan, Pirani, José R., Plunkett, Gregory M., Powell, Robyn F., Prance, Ghillean T., Puglisi, Carmen, Qin, Ming, Rabeler, Richard K., Rees, Paul E. J., Renner, Matthew, Roalson, Eric H., Rodda, Michele, Rogers, Zachary S., Rokni, Saba, Rutishauser, Rolf, de Salas, Miguel F., Schaefer, Hanno, Schley, Rowan J., Schmidt-Lebuhn, Alexander, Shapcott, Alison, Al-Shehbaz, Ihsan, Shepherd, Kelly A., Simmons, Mark P., Simões, André O., Simões, Ana Rita G., Siros, Michelle, Smidt, Eric C., Smith, James F., Snow, Neil, Soltis, Douglas E., Soltis, Pamela S., Soreng, Robert J., Sothers, Cynthia A., Starr, Julian R., Stevens, Peter F., Straub, Shannon C. K., Struwe, Lena, Taylor, Jennifer M., Telford, Ian R. H., Thornhill, Andrew H., Tooth, Ifeanna, Trias-Blasi, Anna, Udovicic, Frank, Utteridge, Timothy M. A., Del Valle, Jose C., Verboom, G. Anthony, Vonow, Helen P., Vorontsova, Maria S., de Vos, Jurriaan M., Al-Wattar, Noor, Waycott, Michelle, Welker, Cassiano A. D., White, Adam J., Wieringa, Jan J., Williamson, Luis T., Wilson, Trevor C., Wong, Sin Yeng, Woods, Lisa A., Woods, Roseina, Worboys, Stuart, Xanthos, Martin, Yang, Ya, Zhang, Yu-Xiao, Zhou, Meng-Yuan, Zmarzty, Sue, Zuloaga, Fernando O., Antonelli, Alexandre, Bellot, Sidonie, Crayn, Darren, Grace, Olwen M., Kersey, Paul J., Leitch, Ilia J., Sauquet, Hervé, Smith, Stephen A., Eiserhardt, Wolf L., Forest, Félix, and Baker, William J. (2024) Phylogenomics and the rise of the angiosperms. Nature, 629. pp. 843-850.
Francis, Robin K., Tostevin, Genevieve, Barbasch, Tina, Branconi, Rebecca, Srinivasan, Maya, Jones, Geoffrey P., and Buston, Peter M. (2024) Positive spatial autocorrelation in three habitat quality indicators sets the stage for evolution of adaptive dispersal plasticity in a coral reef fish. Coral Reefs, 43. pp. 69-78.
Webster, Emily, Duce, Stephanie, Hamann, Mark, Murray, Nicholas, Shimada, Takahiro, and Limpus, Colin (2024) Should I stay or should I go? The influence of environmental conditions on green turtle residence time and outward transit in foraging areas. Marine Biology, 171. 144.
Neil, Rachel C., Barton, Jonathan A., Dougan, Winona, Dworjanyn, Symon, Heyward, Andrew, Mos, Benjamin, Bourne, David G., and Humphrey, Craig (2024) Size matters: Microherbivores make a big impact in coral aquaculture. Aquaculture, 581. 740402.
Collins, William P., Bellwood, David R., and Morais, Renato A. (2024) Small coral reef fishes with large ecological footprints. Coral Reefs, 43. pp. 233-242.
Eustache, Kim B., van Loon, Emiel, Rummer, Jodie L., Planes, Serge, and Smallegange, Isabel (2024) Spatial and temporal analysis of juvenile blacktip reef shark (Carcharhinus melanopterus) demographies identifies critical habitats. Journal of Fish Biology, 104 (1). pp. 92-103.
Athukorala, Ajani, Donnelly, Camilla M., Pavan, Silvia, Nematollahzadeh, Sepehr, Djossou, Victoria Atalie, Nath, Babu, Helbig, Karla J., Di Iorio, Enzo, McSharry, Brian P., Alvisi, Gualtiero, Forwood, Jade K., and Sarker, Subir (2024) Structural and functional characterization of siadenovirus core protein VII nuclear localization demonstrates the existence of multiple nuclear transport pathways. Journal of General Virology, 105 (1). 001928.
Wardhani, Kartika, Levina, Aviva, Sun, Biyun, Zou, Haipei, Grau, Georges E.R., Keene, Richard, Collins, J. Grant, and Lay, Peter A. (2024) Tetranuclear Polypyridylruthenium(II) Complexes as Selective Nucleic Acid Stains for Flow Cytometric Analysis of Monocytic and Epithelial Lung Carcinoma Large Extracellular Vesicles. Biomolecules, 14 (6). 664.
Diao, Haoyu, Cernusak, Lucas A., Saurer, Matthias, Gessler, Arthur, Siegwolf, Rolf T.W., and Lehmann, Marco M. (2024) Uncoupling of stomatal conductance and photosynthesis at high temperatures: mechanistic insights from online stable isotope techniques. New Phytologist, 241 (6). pp. 2366-2378.
Klukowski, Natalie, Eden, Paul, Uddin, Muhammad Jasim, and Sarker, Subir (2024) Virome of Australia's most endangered parrot in captivity evidenced of harboring hitherto unknown viruses. Microbiology Spectrum, 12 (1). 03052-23.
Yong, Jose C., Lim, Amy J., and Li, Norman P. (2024) When social status gets in the way of reproduction in modern settings: An evolutionary mismatch perspective. Culture and Evolution, 20 (1). pp. 59-76.
Zhao, Liangju, Liu, Xiaohong, Wang, Ninglian, Barbeta, Adrià, Zhang, Yu, Cernusak, Lucas, and Wang, Lixin (2024) The determining factors of hydrogen isotope offsets between plants and their source waters. New Phytologist, 241 (5). pp. 2009-2024.
Uthicke, Sven, Doyle, Jason R., Gomez Cabrera, Maria, Patel, Frances, McLatchie, Madi J., Doll, Peter C., Chandler, Josie F., and Pratchett, Morgan S. (2024) eDNA monitoring detects new outbreak wave of corallivorous seastar (Acanthaster cf. solaris) at Lizard Island, Great Barrier Reef. Coral Reefs. (In Press)
Tebbett, Sterling B., Bennett, Scott, and Bellwood, David R. (2024) A functional perspective on the meaning of the term ‘herbivore’: patterns versus processes in coral reef fishes. Coral Reefs, 43. pp. 219-232.
Gastineau, Romain, Lemieux, Claude, Turmel, Monique, Otis, Christian, Boyle, Brian, Coulis, Mathieu, Gouraud, Clément, Boag, Brian, Murchie, Archie K., Winsor, Leigh, and Justine, Jean-Lou (2024) The invasive land flatworm Arthurdendyus triangulatus has repeated sequences in the mitogenome, extra-long cox2 gene and paralogous nuclear rRNA clusters. Scientific Reports, 14. 7840.
Tebbett, Sterling B., Bellwood, David R., Bassett, Tahlia, Cuttler, Michael V.W., Moustaka, Molly, Wilson, Shaun K., Yan, Helen F., and Evans, Richard D. (2024) The limited role of herbivorous fishes and turf-based trophic pathways in the functioning of turbid coral reefs. Reviews in Fish Biology and Fisheries, 34 (1). pp. 349-460.
Cooper, Wendy, Zich, Frank, Nauheimer, Lars, Harrison, Melissa, and Crayn, Darren (2024) A revision of Derris and Brachypterum (Leguminosae subfamily Papilionoideae) in Australia. Australian Systematic Botany, 37. SB23030.
Le, Thanh Hoa, Pham, Linh Thi Khanh, Van Quyen, Dong, Nguyen, Khue Thi, Doan, Huong Thi Thanh, Saijuntha, Weerachai, and Blair, David (2024) The ribosomal transcription units of five echinostomes and their taxonomic implications for the suborder Echinostomata (Trematoda: Platyhelminthes). Parasitology Research, 123 (1). 103.
Terzin, Marko, Laffy, Patrick W., Robbins, Steven, Yeoh, Yun Kit, Frade, Pedro R., Glasl, Bettina, Webster, Nicole S, and Bourne, David G. (2024) The road forward to incorporate seawater microbes in predictive reef monitoring. Environmental Microbiome, 19. 5.
Moller, Brittany, Buckley, Hallie R., Petchey, Peter, Hil, Greg, Kinaston, Rebecca, and King, Charlotte L. (2023) Preservation of brain material in the archaeological record: A case study in the New Zealand colonial context. Journal of Archaeological Science, 156. 105774.
Owens, Leigh (2023) Abolishment of spawner-isolated mortality virus and where the remaining science leads. Journal of General Virology, 104 (8). 001878.
Cooper, W.E., Crayn, D.M., and Joyce, E.M. (2023) Aglaia fellii W.E.Cooper & Joyce (Meliaceae), a new species for Cape York Peninsula. Australian Journal of Taxonomy, 23.
Song, Lisheng, Xu, Yanhao, Liddell, Michael, Cui, Yaokui, Liu, Shaomin, and Xu, Peipei (2023) Application of a two source energy balance model coupled with satellite based soil moisture and thermal infrared data. ISPRS Journal of Photogrammetry and Remote Sensing, 204. pp. 15-26.
D’Souza, Maia L., Bopardikar, Isha, Sutaria, Dipani, and Klinck, Holger (2023) Arabian Sea Humpback Whale (Megaptera novaeangliae) Singing Activity off Netrani Island, India. Aquatic Mammals, 49 (3). pp. 223-235.
Ong, Lisa, Tan, Wei Harn, Davenport, Lisa C., McConkey, Kim R., Mat Amin, Mohamad Khairul Adha bin, Campos-Arceiz, Ahimsa, and Terborgh, John W. (2023) Asian elephants as ecological filters in Sundaic forests. Frontiers in Forests and Global Change, 6. 1143633.
Márquez, Diego A., Stuart-Williams, Hilary, Cernusak, Lucas A., and Farquhar, Graham D. (2023) Assessing the CO2 concentration at the surface of photosynthetic mesophyll cells. New Phytologist, 238 (4). pp. 1446-1460.
Quin, Matthew J., Morgan, John W., and Murphy, Nicholas P. (2023) Assessing the diet and seed dispersal ability of non-native sambar deer (Rusa unicolor) in native ecosystems of south-eastern Australia. Ecology and Evolution, 13 (11). e10711.
Oliveira Vogado, Nara, Laurance, Susan G., Liddell, Michael J., Engert, Jayden E., Wurster, Christopher M., Schiffer, Michele, Thompson, Andrew, Nichols, Cassandra, and Cernusak, Lucas A. (2023) Assessing the effects of a drought experiment on the reproductive phenology and ecophysiology of a wet tropical rainforest community. Conservation Physiology, 11 (1). coad064.
Hutson, Kate S., Davidson, Ian C., Bennett, Jerusha, Poulin, Robert, and Cahill, Patrick L. (2023) Assigning cause for emerging diseases of aquatic organisms. Trends in Microbiology, 31 (7). pp. 681-691.
Nath, Babu Kanti, Das, Tridip, Peters, Andrew, Gupta, Suman Das, Sarker, Subir, Forwood, Jade K., Raidal, Shane R., and Das, Shubhagata (2023) Australasian Pigeon Circoviruses Demonstrate Natural Spillover Infection. Viruses, 15 (10). 2025.
Ballard, J. William O., Field, Matt A., Edwards, Richard J., Wilson, Laura A.B., Koungoulos, Loukas G., Rosen, Benjamin D., Chernoff, Barry, Dudchenko, Olga, Omer, Arina, Keilwagen, Jens, Skvortsova, Ksenia, Bogdanovic, Ozren, Chan, Eva, Zammit, Robert, Hayes, Vanessa, and Aiden, Erez Lieberman (2023) The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology. GigaScience, 12. giad018.
Ni, Xue-Feng, Barton, Diane P., and Li, Liang (2023) Austraplectana extranes sp. n. (Nematoda: Cosmocercoidea) from Australian amphibians Mixophyes carbinensis Mahony, Donnellan, Richards & McDonald (Anura: Myobatrachidae) and Rhinella marina (Linnaeus) (Anura: Bufonidae). Systematic Parasitology, 100. pp. 183-188.
Frøland Steindal, Inga A., Yamamoto, Yoshiyuki, and Whitmore, David (2023) Blind fish have cells that see light. Proceedings of the Royal Society of London B: Biological Sciences, 290 (2002). 20230981.
Rowell, Misha K., and Rymer, Tasmin L. (2023) Both age and experience are important for successful problem solving in juvenile fawn-footed mosaic-tailed rats Melomys cervinipes. Animal Cognition, 26. pp. 781-789.
Suresh, Sneha, Mirasole, Alice, Ravasi, Timothy, Vizzini, Salvatrice, and Schunter, Celia (2023) Brain transcriptome of gobies inhabiting natural CO2 seeps reveal acclimation strategies to long-term acidification. Evolutionary Applications, 16 (7). pp. 1345-1358.
Gilman, Ian S., Smith, J. Andrew C., Holtum, Joseph A.M., Sage, Rowan F., Silvera, Katia, Winter, Klaus, and Edwards, Erika J. (2023) The CAM lineages of planet Earth. Annals of Botany, 132 (4). pp. 627-654.
Rowland, Jesse, Hoskin, Conrad J., and Burnett, Scott (2023) Camera-trapping density estimates suggest critically low population sizes for the Wet Tropics subspecies of the spotted-tailed quoll (Dasyurus maculatus gracilis). Austral Ecology, 48 (2). pp. 399-417.
Aulsebrook, Lucinda C., Wong, Bob B.M., and Hall, Matthew D. (2023) Can pharmaceutical pollution alter the spread of infectious disease? A case study using fluoxetine. Philosophical Transactions of the Royal Society B: Biological Sciences, 378 (1873). 20220010.
Athukorala, Ajani, Lacasse, Claude, Curtiss, Jeffrey B., Phalen, David N., and Sarker, Subir (2023) Characterisation of a novel aviadenovirus associated with disease in tawny frogmouths (Podargus strigoides). Virology, 588. 109904.
Nambiar, Geetika, Owens, Leigh, and Elliman, Jennifer (2023) Cherax quadricarinatus Resistant to Chequa iflavirus: A Pilot Study. Microorganisms, 11 (3). 578.
Pei, Yingbing, Deng, Zhixiong, Zhang, Xiuping, Blair, David, Hu, Wei, and Yin, Mingbo (2023) Chromosome-scale genome assembly of the freshwater cladoceran crustacean Chydorus sphaericus: A resource for discovery of genes responsive to ecological challenges. Aquatic Toxicology, 260. 106565.
de la Fuente Pinero, Alejandro, and Williams, Stephen E. (2023) Climate change threatens the future of rain forest ringtail possums by 2050. Diversity and Distributions, 29 (1). pp. 173-183.
Deng, Zhixiong, Zhang, Xiuping, Wolinska, Justyna, Blair, David, Hu, Wei, and Yin, Mingbo (2023) Climate has contributed to population diversification of Daphnia galeata across Eurasia. Molecular Ecology, 32 (18). pp. 5110-5124.
Manríquez, Patricio H., González, Claudio P., Jara, María Elisa, Watson, Sue-Ann, Torres, Rodrigo, Domenici, Paolo, and Duarte, Cristian (2023) Combined effects of climate change stressors and predators with contrasting feeding-digestion strategies on a mussel species. Marine Pollution Bulletin, 187. 114554.
Sarker, Subir (2023) Complete Mitochondrial Genome Sequence of an Australian Little Crow (Corvus bennetti). Microbiology Resource Announcements, 12 (5). e01367-22.
Hall, April E., Sievers, Katie T., and Kingsford, Michael J. (2023) Conservation benefits of no-take marine reserves outweigh modest benefits of partially protected areas for targeted coral reef fishes. Coral Reefs, 42. pp. 319-333.
Bertola, Lorenzo V., Higgie, Megan, Zenger, Kyall R., and Hoskin, Conrad J. (2023) Conservation genomics reveals fine-scale population structuring and recent declines in the Critically Endangered Australian Kuranda Treefrog. Conservation Genetics, 24. pp. 249-264.
Westerband, Andrea C., Wright, Ian J., Maire, Vincent, Paillassa, Jennifer, Prentice, Iain Colin, Atkin, Owen K., Bloomfield, Keith J., Cernusak, Lucas A., Dong, Ning, Gleason, Sean M., Pereira, Caio Guilherme, Lambers, Hans, Leishman, Michelle R., Malhi, Yadvinder, and Nolan, Rachael H. (2023) Coordination of photosynthetic traits across soil and climate gradients. Global Change Biology, 29 (3). pp. 856-873.
Spiecker, Lisa, Curdt, Franziska, Bally, Andreas, Janzen, Nadja, Kraemer, Philipp, Leberecht, Bo, Kingsford, Michael J., Mouritsen, Henrik, Winklhofer, Michael, and Gerlach, Gabriele (2023) Coral reef fish larvae show no evidence for map-based navigation after physical displacement. iScience, 26 (6). 106950.
Chen, Xuelei, Xu, Tian, Dowse, Harold B., Tao, Yi, Zeng, Chaoshu, Zhao, Fanyi, Ye, Haihui, and Guo, Donghui (2023) Correlation between transport and moulting of catadromous crab megalopae: The effects of starvation on rhythmic vertical migration. Marine and Freshwater Behaviour and Physiology, 56 (1-2). pp. 1-18.
Holloway-Phillips, Meisha, Cernusak, Lucas A., Nelson, Daniel B., Lehmann, Marco M., Tcherkez, Guillaume, and Kahmen, Ansgar (2023) Covariation between oxygen and hydrogen stable isotopes declines along the path from xylem water to wood cellulose across an aridity gradient. New Phytologist, 240 (5). pp. 1758-1773.
Matias, Ambrosio Melvin A., Popovic, Iva, Thia, Joshua A., Cooke, Ira R., Torda, Gergely, Lukoschek, Vimoksalehi, Bay, Line, Kim, Sun, and Riginos, Cynthia (2023) Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef. Evolutionary Applications, 16 (2). pp. 293-310.
Taite, M., Dillon, L., Strugnell, J.M., Drewery, J., and Allcock, A.L. (2023) DNA barcoding reveals unexpected diversity of deep-sea octopuses in the north-east Atlantic. Biology and Environment, 123 (1). pp. 1-12.
Douglas, Sophia R.L., Tebbett, Sterling B., Choukroun, Severine, Goatley, Christopher H.R., and Bellwood, David R. (2023) Depth stratified light trap sampling reveals variation in the depth distribution of late-stage cryptobenthic reef fish larvae. Coral Reefs, 42 (2). pp. 507-512.
Sarker, Subir, and Phalen, David (2023) Detection of a Novel Alphaherpesvirus and Avihepadnavirus in a Plantar Papilloma from a Rainbow Lorikeet (Trichoglosis moluccanus). Viruses, 15 (10). 2106.
Simpson, Tiffany J.S., Wellington, Claire M., Lukehurst, Sherralee S., Huerlimann, Roger, Veilleux, Heather, Snow, Michael, Dias, Joana, and McDonald, Justin I. (2023) Development of a real-time PCR (qPCR) method for the identification of the invasive paddle crab Charybdis japonica (Crustacea, Portunidae). PeerJ, 11. e15522.
Borghi, Stefano, Clements, Matthew, Webb, Monique, Bostock, Helen, Webster, Jody M., McNeil, Mardi, Nothdurft, Luke, and Byrne, Maria (2023) Discovery of the dendrophylliid scleractinian Heteropsammia cochlea (Spengler, 1781) in Halimeda bioherms of the Northern Great Barrier Reef. Marine Biodiversity, 53 (3). 39.
Cui, Meng Meng, Moynier, Frédéric, Su, Ben Xun, Dai, Wei, Mahan, Brandon, and Le Borgne, Marie (2023) Distinctive calcium isotopic composition of mice organs and fluids: implications for biological research. Analytical and Bioanalytical Chemistry, 415. pp. 6839-6850.
Alvarez-Noriega, Mariana, Madin, Joshua S., Baird, Andrew H., Dornelas, Maria, and Connolly, Sean R. (2023) Disturbance-induced changes in population size structure promote coral biodiversity. American Naturalist, 202 (5). pp. 604-615.
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Sarker, Subir, Isberg, Sally R., Milic, Natalie L., Lock, Peter, and Helbig, Karla J. (2018) Molecular characterization of the first saltwater crocodilepox virus genome sequences from the world's largest living member of the Crocodylia. Scientific Reports, 8 (1). 5623.
Noonan, Sam, Kluibenschedl, Anna, and Fabricius, Katharina (2018) Ocean acidification alters early successional coral reef communities and their rates of community metabolism. PLoS ONE, 13 (5). e0197130.
MacLeod, K.J., and Brouwer, L. (2018) Social context-dependent provisioning rules in red-winged fairy-wrens do not vary with signals of increased chick need. Animal Behaviour, 143. pp. 105-111.
Henstridge, Michelle A., Aulsebrook, Lucinda, Koyama, Takashi, Johnson, Travis K., Whisstock, James C., Tiganis, Tony, Mirth, Christen K., and Warr, Coral G. (2018) Torso-Like Is a Component of the Hemolymph and Regulates the Insulin Signaling Pathway in Drosophila. Genetics, 208 (4). pp. 1523-1533.
Johnson, Emma K., Bauquier, Sébastien H., Carter, Jennifer E., Whittem, Ted, and Beths, Thierry (2018) Two-point ultrasound-guided transversus abdominis plane injection in canine cadavers – a pilot study. Veterinary Anaesthesia and Analgesia, 45 (6). pp. 871-875.
Naude, Tanian, Pant, Sameer, Tavassoli, Mousa, Sarker, Subir, and Ghorashi, Seyed Ali (2018) The complete mitochondrial genome of Linguatula serrata (tongue worm) isolated from a dog and phylogenetic analysis. Mitochondrial DNA Part B: Resources, 3 (1). pp. 357-358.
Lim, Jin Yan, Barnett, Timothy C., Bastiani, Michele, McMahon, Kerrie-Ann, Ferguson, Charles, Webb, Richard I., Parton, Robert G., and Walker, Mark J. (2017) Caveolin 1 restricts Group A Streptococcus invasion of nonphagocytic host cells. Cellular Microbiology, 19 (12). e12772.
Sarker, Subir, Wang, Yinan, Warren-Smith, Brenden, and Helbig, Karla J. (2017) Dynamic changes in host gene expression following in vitro viral mimic stimulation in crocodile cells. Frontiers in Immunology, 8. 1634.
Knight, Kathryn, and Rummer, Jodie (2017) Early-career researchers: an interview with Jodie Rummer. The Journal of Experimental Biology, 220 (20). pp. 3608-3610.
Gardner, Janet L., Rowley, Eleanor, De Rebeira, Perry, De Rebeira, Alma, and Brouwer, Lyanne (2017) Effects of extreme weather on two sympatric australian passerine bird species. Philosophical Transactions of the Royal Society B: Biological Sciences, 372 (1723). 20160148.
Sarker, Subir, Das, Shubhagata, Lavers, Jennifer L., Hutton, Ian, Helbig, Karla, Imbery, Jacob, Upton, Chris, and Raidal, Shane R. (2017) Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.). BMC Genomics, 18 (1). 298.
Schmitz, Ulf, Pinello, Natalia, Jia, Fangzhi, Alasmari, Sultan, Ritchie, William, Keightley, Maria-Cristina, Shini, Shaniko, Lieschke, Graham J., Wong, Justin J-L., and Rasko, John E.J. (2017) Intron retention enhances gene regulatory complexity in vertebrates. Genome Biology, 18. 216.
Sarker, Subir, Roberts, Hayley K., Tidd, Naomie, Ault, Shayne, Ladmore, Georgia, Peters, Andrew, Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2017) Molecular and microscopic characterization of a novel Eastern grey kangaroopox virus genome directly from a clinical sample. Scientific Reports, 7. 16472.
Brouwer, Lyanne, van de Pol, Martijn, Aranzamendi, Nataly Hidalgo, Bain, Glen, Baldassarre, Daniel T., Brooker, Lesley C., Brooker, Michael G., Colombelli-Négrel, Diane, Enbody, Erik, Gielow, Kurt, Hall, Michelle L., Johnson, Allison E., Karubian, Jordan, Kingma, Sjouke A., Kleindorfer, Sonia, Louter, Marina, Mulder, Raoul A., Peters, Anne, Pruett-Jones, Stephen, Tarvin, Keith A., Thrasher, Derrick J., Varian-Ramos, Claire W., Webster, Michael S., and Cockburn, Andrew (2017) Multiple hypotheses explain variation in extra-pair paternity at different levels in a single bird family. Molecular Ecology, 26 (23). pp. 6717-6729.
Hammers, Martijn, and Brouwer, Lyanne (2017) Rescue behaviour in a social bird: Removal of sticky 'bird-catcher tree' seeds by group members. Behaviour, 154 (4). pp. 403-411.
Rummer, Jodie L. (2017) What if you can't sense your enemy... and your enemy is an invasive predator? Conservation Physiology, 5 (1).
Das, Shubhagata, Fearnside, Kathleen, Sarker, Subir, Forwood, Jade K., and Raidal, Shane R. (2017) A novel pathogenic aviadenovirus from red-bellied parrots (Poicephalus rufiventris) unveils deep recombination events among avian host lineages. Virology, 502. pp. 188-197.
Revell, B., Couper, P., Wilson, S., Amey, A., and Hoskin, C.J. (2017) A significant range extension for the Border Ranges Leaf-tailed Gecko, Saltuarius swaini (Wells & Wellington, 1985) (Reptilia: Carphodactylidae). Memoirs of the Queensland Museum - Nature, 60. pp. 185-191.
Das, Shubhagata, Subir, Sarker, Adriaanse, Katherine, Forwood, Jade K., Ghorashi, Seyed A., and Raidal, Shane R. (2016) Characterization of Beak and Feather Disease Virus Genomes from Wild Musk Lorikeets (Glossopsitta concinna). Genome Announcements, 4 (5). e01107-16.
Sarker, Subir, Lloyd, Chris, Forwood, Jade, and Raidal, Shane R. (2016) Forensic genetic evidence of beak and feather disease virus infection in a Powerful Owl, Ninox strenua. Emu, 116 (1). pp. 71-74.
Sarker, Subir, Das, Shubhagata, Helbig, Karla, and Raidal, Shane R. (2016) Identification of beak and feather disease virus in an unusual novel host (Merops ornatus) using nested PCR. Genome Announcements, 4 (6). e0137616.
Mourocq, Emeline, Bize, Pierre, Bouwhuis, Sandra, Bradley, Russell, Charmantier, Anne, de la Cruz, Carlos, Drobniak, Szymon M., Espie, Richard H.M., Herényi, Márton, Hötker, Hermann, Krüger, Oliver, Marzluff, John, Møller, Anders P., Nakagawa, Shinichi, Phillips, Richard A., Radford, Andrew N., Roulin, Alexandre, Török, János, Valencia, Juliana, van de Pol, Martijn, Warkentin, Ian G., Winney, Isabel S., Wood, Andrew G., and Griesser, Michael (2016) Life span and reproductive cost explain interspecific variation in the optimal onset of reproduction. Evolution, 70 (2). pp. 296-313.
Lejeune, Lea, van de Pol, Martijn, Cockburn, Andrew, Louter, Marina, and Brouwer, Lyanne (2016) Male and female helper effects on maternal investment and adult survival in red-winged fairy-wrens. Behavioral Ecology, 27 (6). pp. 1841-1850.
Das, Shubhagata, Subir, Sarker, Fearnside, Kathleen, Forwood, Jade K., Ghorashi, Seyed A., and Raidal, Shane R. (2016) Molecular Characterization of a Beak and Feather Disease Virus Genome from a Purple Crowned Lorikeet (Glossopsitta porphyrocephala). Genome Announcements, 4 (5). e01102-16.
Noonan, Sam H.C., and Fabricius, Katharina E. (2016) Ocean acidification affects productivity but not the severity of thermal bleaching in some tropical corals. ICES Journal of Marine Science, 73 (3). pp. 715-726.
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Schmitz, Ulf, Naderi-Meshkin, Hojjat, Gupta, Shailendra K., Wolkenhauer, Olaf, and Vera, Julio (2016) The RNA world in the 21st century-a systems approach to finding non-coding keys to clinical questions. Briefings in Bioinformatics, 17 (3). pp. 380-392.
Wright, David J., Brouwer, Lyanne, Mannarelli, Maria Elena, Burke, Terry, Komdeur, Jan, and Richardson, David S. (2016) Social pairing of Seychelles warblers under reduced constraints: MHC, neutral heterozygosity, and age. Behavioral Ecology, 27 (1). pp. 295-303.
Sarker, Subir, Terrón, María C., Khandokar, Yogesh, Aragão, David, Hardy, Joshua M., Radjainia, Mazdak, Jiménez-Zaragoza, Manuel, De Pablo, Pedro J., Coulibaly, Fasséli, Luque, Daniel, Raidal, Shane R., and Forwood, Jade K. (2016) Structural insights into the assembly and regulation of distinct viral capsid complexes. Nature Communications, 7. 13014.
Wolfien, Markus, Rimmbach, Christian, Schmitz, Ulf, Jung, Julia Jeannine, Krebs, Stefan, Steinhoff, Gustav, David, Robert, and Wolkenhauer, Olaf (2016) TRAPLINE: A standardized and automated pipeline for RNA sequencing data analysis, evaluation and annotation. BMC Bioinformatics, 17. 21.
Das, Shubhagata, Subir, Sarker, Forwood, Jade K., Ghorashi, Seyed A., and Raidal, Shane R. (2016) Whole-Genome Sequence of a Beak and Feather Disease Virus Isolate from a Fledgling Red-Capped Parrot (Purpureicephalus spurius). Genome Announcements, 4 (5). e01108-16.
Das, Shubhagata, Sarker, Subir, Ghorashi, Seyed Ali, Forwood, Jade K., and Raidal, Shane R. (2016) A comparison of PCR assays for beak and feather disease virus and high resolution melt (HRM) curve analysis of replicase associated protein and capsid genes. Journal of Virological Methods, 237. pp. 47-57.
Sarker, Subir, Das, Shubhagata, Forwood, Jade, Helbig, Karla, and Raidal, Shane R. (2016) The complete mitochondrial genome sequence of an Endangered powerful owl (Ninox strenua). Mitochondrial DNA Part B: Resources, 1 (1). pp. 722-723.
Edwards, Christopher R., Ritchie, William, Wong, Justin J-L., Schmitz, Ulf, Middleton, Robert, An, Xiuli, Mohandas, Narla, Rasko, John E.J., and Blobel, Gerd A. (2016) A dynamic intron retention program in the mammalian megakaryocyte and erythrocyte lineages. Blood, 127 (17). e24-e34.
Wada, Naohisa, Kawamoto, Tadafumi, Sato, Yui, and Mano, Nobuhiro (2016) A novel application of a cryosectioning technique to undecalcified coral specimens. Marine Biology, 163. 117.
Sarker, S., Forwood, J.K., Ghorashi, S.A., Peters, A., and Raidal, S.R. (2015) Beak and feather disease virus genotypes in Australian parrots reveal flexible host-switching. Australian Veterinary Journal, 93 (12). pp. 471-475.
Herfindal, Ivar, van de Pol, Martijn, Nielsen, Jan T., Sæther, Bernt-Erik, and Møller, Anders P. (2015) Climatic conditions cause complex patterns of covariation between demographic traits in a long-lived raptor. Journal of Animal Ecology, 84 (3). pp. 702-711.
Francis, Deanne, and Ghabrial, Amin S. (2015) Compensatory branching morphogenesis of stalk cells in the Drosophila trachea. Development, 142. pp. 2048-2057.
Sarker, Subir, Moylan, Kathy G., Ghorashi, Seyed A., Forwood, Jade K., Peters, Andrew, and Raidal, Shane R. (2015) Evidence of a deep viral host switch event with beak and feather disease virus infection in rainbow bee-eaters (Merops ornatus). Scientific Reports, 5. 14511.
Amirkhah, Raheleh, Farazmand, Ali, Gupta, Shailendra K., Ahmadi, Hamed, Wolkenhauer, Olaf, and Schmitz, Ulf (2015) Naïve Bayes classifier predicts functional microRNA target interactions in colorectal cancer. Molecular BioSystems, 11. pp. 2126-2134.
Raidal, S.R., Sarker, S., and Peters, A. (2015) Review of psittacine beak and feather disease and its effect on Australian endangered species. Australian Veterinary Journal, 93 (12). pp. 466-470.
Sarker, Subir, Ghorashi, Seyed A., Swarbrick, Crystall M.D., Khandokar, Yogesh B., Himiari, Zainab, Forwood, Jade K., and Raidal, Shane R. (2015) An efficient approach for recombinant expression and purification of the viral capsid protein from beak and feather disease virus (BFDV) in Escherichia coli. Journal of Virological Methods, 215-216.
Schmitz, Ulf, Lai, Xin, Winter, Felix, Wolkenhauer, Olaf, Vera, Julio, and Gupta, Shailendra (2014) Cooperative gene regulation by microRNA pairs and their identification using a computational workflow. Nucleic Acids Research, 42 (12). pp. 7539-7552.
Brouwer, Lyanne, van de Pol, Martijn, and Cockburn, Andrew (2014) Habitat geometry does not affect levels of extrapair paternity in an extremely unfaithful fairy-wren. Behavioral Ecology, 25 (3). pp. 531-537.
Khan, Faiz M., Schmitz, Ulf, Nikolov, Svetoslav, Engelmann, David, Pützer, Brigitte M., Wolkenhauer, Olaf, and Vera, Julio (2014) Hybrid modeling of the crosstalk between signaling and transcriptional networks using ordinary differential equations and multi-valued logic. Biochimica et Biophysica Acta. Protein Structure and Molecular Enzymology, 1844 (1). pp. 289-298.
Hoskin, Conrad J., and Couper, Patrick J. (2014) Two new skinks (Scincidae: Glaphyromorphus) from rainforest habitats in north-eastern Australia. Zootaxa, 3869 (1).
Couper, Patrick J., and Hoskin, Conrad J. (2014) A new genus to accommodate three skinks currently assigned to Menetia (Lacertilia: Scincidae). Zootaxa, 3884 (6). pp. 597-599.
Brouwer, Lyanne, van de Pol, Martijn, and Cockburn, Andrew (2014) The role of social environment on parental care: offspring benefit more from the presence of female than male helpers. Journal of Animal Ecology, 83. pp. 491-503.
Hill, David P., Adams, Nico, Bada, Mike, Batchelor, Colin, Berardini, Tanya Z., Dietze, Heiko, Drabkin, Harold J., Ennis, Marcus, Foulger, Rebecca E., Harris, Midori A., Hastings, Janna, Kale, Namrata S., de Matos, Paula, Mungall, Christopher J., Owen, Gareth, Roncaglia, Paola, Steinbeck, Christoph, Turner, Steve, and Lomax, Jane (2013) Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology. BMC Genomics, 14. 513.
Cockburn, Andrew, Brouwer, Lyanne, Double, Michael C., Margraf, Nicolas, and van de Pol, Martijn (2013) Evolutionary origins and persistence of infidelity in Malurus: the least faithful birds. Emu: austral ornithology, 113 (3). pp. 208-217.
Noonan, Sam H.C., Fabricius, Katharina E., and Humphrey, Craig (2013) Symbiodinium Community Composition in Scleractinian Corals Is Not Affected by Life-Long Exposure to Elevated Carbon Dioxide. PLoS ONE, 8 (5). e63985.
Lai, X., Bhattacharya, A., Schmitz, U., Kunz, M., Vera, J., and Wolkenhauer, O. (2013) A systems' biology approach to study microrna-mediated gene regulatory networks. BioMed Research International, 2013. 703849.
Lai, Xin, Schmitz, Ulf, Gupta, Shailendra K., Bhattacharya, Animesh, Kunz, Manfred, Wolkenhauer, Olaf, and Vera, Julio (2012) Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs. Nucleic Acids Research, 40 (18). pp. 8818-8834.
van de Pol, Martijn (2012) Quantifying individual variation in reaction norms: how study design affects the accuracy, precision and power of random regression models. Methods in Ecology and Evolution, 3 (2). pp. 268-280.
Dingemanse, Niels J., Bouwman, Karen M., van de Pol, Martijn, van Overveld, Thijs, Patrick, Samantha C., Matthysen, Erik, and Quinn, John L. (2012) Variation in personality and behavioural plasticity across four populations of the great tit Parus major. Journal of Animal Ecology, 81 (1). pp. 116-126.
Cui, Cheng, Chatterjee, Bishwanath, Francis, Deanne, Yu, Qing, SanAgustin, Jovenal T., Francis, Richard, Tansey, Terry, Henry, Charisse, Wang, Baolin, Lemley, Bethan, Pazour, Gregory J., and Lo, Cecilia W. (2011) Disruption of Mks1 localization to the mother centriole causes cilia defects and developmental malformations in Meckel-Gruber syndrome. Disease Models & Mechanisms, 4. pp. 43-56.
van de Pol, Martijn, and Cockburn, Andrew (2011) Identifying the critical climatic time window that affects trait expression. American Naturalist, 177 (5). pp. 698-707.
Adams, Nico, Hoehndorf, Robert, Gkoutos, Georgios V., Hansen, Gensine, and Hennig, Christian (2011) PIDO: the primary immunodeficiency disease ontology. Bioinformatics, 27 (22). pp. 3193-3199.
Brouwer, Lyanne, van de Pol, Martijn, Atema, Els, and Cockburn, Andrew (2011) Strategic promiscuity helps avoid inbreeding at multiple levels in a cooperative breeder where both sexes are philopatric. Molecular Ecology, 20 (22). pp. 4796-4807.
Srivastava, Mansi, Simakov, Oleg, Chapman, Jarrod, Fahey, Bryony, Gauthier, Marie E.A., Mitros, Therese, Richards, Gemma S., Conaco, Cecilia, Dacre, Michael, Hellsten, Uffe, Larroux, Claire, Putnam, Nicholas H, Stanke, Mario, Adamska, Maja, Darling, Aaron, Degnan, Sandie M., Oakley, Todd H., Plachetzki, David C., Zhai, Yufeng, Adamski, Marcin, Calcino, Andrew, Cummins, Scott F., Goodstein, David M., Harris, Christina, Jackson, Daniel J., Leys, Sally P., Shu, Shengqiang, Woodcroft, Ben J., Vervoort, Michel, Kosik, Kenneth S., Manning, Gerard, Degnan, Bernard M., and Rokhsar, Daniel S. (2010) The Amphimedon queenslandica genome and the evolution of animal complexity. Nature, 466. pp. 720-726.
van de Pol, Martijn, Brouwer, Lyanne, Ens, Bruno J., Oosterbeek, Kees, and Tinbergen, Joost M. (2010) Fluctuating selection and the maintenance of individual and sex-specific diet specialization in free-living oystercatchers. Evolution, 64 (3). pp. 836-851.
Brouwer, Lyanne, Barr, Iain, van de Pol, Martijn, Burke, Terry, Komdeur, Jan, and Richardson, David S. (2010) MHC-dependent survival in a wild population: evidence for hidden genetic benefits gained through extra-pair fertilizations. Molecular Ecology, 19 (16). pp. 3444-3455.
Raasch, Peter, Schmitz, Ulf, Patenge, Nadja, Vera, Julio, Kreikemeyer, Bernd, and Wolkenhauer, Olaf (2010) Non-coding RNA detection methods combined to improve usability, reproducibility and precision. BMC Bioinformatics, 11. 491.
Nikolov, Svetoslav, Vera, Julio, Schmitz, Ulf, and Wolkenhauer, Olaf (2010) A model-based strategy to investigate the role of microRNA regulation in cancer signalling networks. Theory in Biosciences, 130. pp. 55-69.
van de Pol, Martijn, Oosterbeek, Kees, Rutten, Anne L., Ens, Bruno J., Tinbergen, Joost M., and Verhulst, Simon (2009) Biometric sex discrimination is unreliable when sexual dimorphism varies within and between years: an example in Eurasian Oystercatchers Haematopus ostralegus. Ibis, 151 (1). pp. 171-180.
Vera, Julio, Kwon, Taesoo, Schmitz, Ulf, Kolch, Walter, and Wolkenhauer, Olaf (2009) Exploration of homodimer receptor: homodimer protein interactions. International Journal of Bioinformatics Research and Applications, 5 (4). p. 447.
van de Pol, Martijn, Ens, Bruno J., Oosterbeek, Kees, Brouwer, Lyanne, Verhulst, Simon, Tinbergen, Joost M., Rutten, Anne L., and De Jonge, Martin (2009) Oystercatchers' bill shapes as a proxy for diet specialization: more differentiation than meets the eye. Ardea, 97 (3). pp. 335-346.
Hoffrogge, Raimund, Beyer, Susanne, Hübner, Rayk, Mikkat, Stefan, Mix, Eilhard, Scharf, Christian, Schmitz, Ulf, Pauleweit, Stefan, Berth, Matthias, Zubrzycki, Igor Z., Christoph, Hilmar, Pahnke, Jens, Wolkenhauer, Olaf, Uhrmacher, Adelinde, Völker, Uwe, and Rolfs, Arndt (2007) 2-DE profiling of GDNF overexpression-related proteome changes in differentiating ST14A rat progenitor cells. Proteomics, 7 (1). pp. 33-46.
Roman, Gheorghe, Riley, John, Vlahakis, Jason, Kinobe, Robert, Brien, James, Nakatsu, Kanji, and Szarek, Walter (2007) Heme oxygenase inhibition by 2-oxy-substituted 1-(1H-imidazol-1-yl)-4-phenylbutanes: Effect of halogen substitution in the phenyl ring. Bioorganic & Medicinal Chemistry, 15. pp. 3225-3234.
van de Pol, Martijn, Pen, Ido, Heg, Dik, and Weissing, Franz J. (2007) Variation in habitat choice and delayed reproduction: adaptive queuing strategies or individual quality differences? American Naturalist, 170 (4). pp. 530-541.
van de Pol, M., and Verhulst, S. (2006) Age‐Dependent Traits: A New Statistical Model to Separate Within‐ and Between‐Individual Effects. American Naturalist, 167 (5). pp. 766-773.
Bruinzeel, Leo W., van de Pol, Martijn, and Trierweiler, Christiane (2006) Competitive abilities of oystercatchers (Haematopus ostralegus) occupying territories of different quality. Journal of Ornithology, 147. pp. 457-463.
van de Pol, Martijn, Heg, Dik, Bruinzeel, Leo W., Kuijper, Bram, and Verhulst, Simon (2006) Experimental evidence for a causal effect of pair-bond duration on reproductive performance in oystercatchers (Haematopus ostralegus). Behavioral Ecology, 17 (6). pp. 982-991.
van de Pol, Martijn, Bruinzeel, Leo W., Heg, Dik, Van der Jeugd, Henk P., and Verhulst, Simon (2006) Journal of Animal Ecology Journal of Animal Ecology Free Access A silver spoon for a golden future: long-term effects of natal origin on fitness prospects of oystercatchers (Haematopus ostralegus). Journal of Animal Ecology, 75 (2). pp. 616-626.
van de Pol, Martijn, Bakker, Trineke, Saaltink, Dirk-Jan, and Verhulst, Simon (2006) Rearing conditions determine offspring survival independent of egg quality: a cross-foster experiment with Oystercatchers Haematopus ostralegus. Ibis, 148 (2). pp. 203-210.
Bruinzeel, Leo W., and van de Pol, Martijn (2004) Site attachment of floaters predicts success in territory acquisition. Behavioral Ecology, 15 (2). pp. 290-296.
Bruinzeel, Leo, and van de Pol, Martijn (2003) Population decline of Oystercatchers on Schiermonnikoog. Limosa, 76 (1). 25 - 26.
Ens, Bruno, Berrevoets, Cor, Bruinzeel, Leo, Bult, Tammo, Haanstra, Lieuwe, Hulscher, Jan, Koks, Ben, van de Pol, Martijn, Rappoldt, Kees, Teunissen, Wolf, and Verhulst, Simon (2003) Synthesis: what caused the current decline of Oystercatchers in the Netherlands? / Synthese: wat veroorzaakt de huidige achteruitgang van Scholeksters in Nederland? Limosa, 76 (1). 34 - 38.
Edwards, Will (1998) Rarity within taxonomic lineages and the use of taxa above the level of species. Ecography, 21 (6). pp. 625-629.
Edwards, Will, and Westoby, Mark (1996) Reserve mass and dispersal investment in relation to geographic range of plant species: phylogenetically independent contrasts. Journal of Biogeography, 23 (3). pp. 329-338.
Tyagi, Anand, Dass, Crispin, Nathan, Subhashni, Racule, Timaima, and Lakhan, Sharonika (1995) Pollen fertility status in some flowering plant species of Fiji. South Pacific Journal of Natural Science, 14. pp. 211-222.
Edwards, Will, and Whelan, Robert (1995) The size, distribution and germination requirements of the soil-stored seed-bank of Grevillea barklyana (Proteaceae). Australian Journal of Ecology, 20 (4). pp. 548-555.
Book Chapter
Pratchett, Morgan S., Chandler, Josie F., Choukroun, Severine M., Doll, Peter C., Lang, Bethan J., Kwong, Sarah, Chen, Carla C.M., Emslie, Mike J., Caballes, Ciemon F., Uthicke, Sven, and Matthews, Sam A. (2024) Biophysical Processes Involved in the Initiation and Spread of Population Irruptions of Crown-of-Thorns Starfish on the Great Barrier Reef. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Oceanographic Processes of Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, Florida, USA, pp. 290-305.
Strugnell, Richard A., Newton, Hayley J., and Kupz, Andreas (2024) Survival strategies of intracellular bacterial pathogens. In: Tang, Yi-Wei, Hindiyeh, Musa, Liu, Dongyou, Sails, Andrew, Spearman, Paul, and Zhang, Jingren, (eds.) Molecular Medical Microbiology. Elsevier, London, United Kingdom, pp. 457-488.
Schmitz, Ulf (2023) Overview of Computational and Experimental Methods to Identify Tissue-Specific MicroRNA Targets. In: Dalmay, Tamas, (ed.) MicroRNA Detection and Target Identification: Methods and Protocols. Methods in Molecular Biology, 2630 . Humana Press, New York, NY, USA, pp. 155-177.
Schunter, Celia, Donelson, Jennifer M., Munday, Philip L., and Ravasi, Timothy (2023) Resilience and Adaptation to Local and Global Environmental Change. In: Laudet, Vincent, and Ravasi, Timothy, (eds.) Evolution, Development and Ecology of Anemonefishes: Model Organisms for Marine Science. CRC Press, Boca Raton, Florida, USA, pp. 253-273.
Ross, Pauline M., Scanes, Elliot, Byrne, Maria, Ainsworth, Tracy, Donelson, Jennifer M., Foo, Shawna A., Hutchings, Pat, Thiyagarajan, Vengatesen, and Parker, Laura M. (2023) Surviving the Anthropocene: the resilience of marine animals to climate change. In: Hawkins, S.J., Todd, P.A., Russell, B.D., Lemasson, A.J., Allcock, A.L., Byrne, M., Firth, L.B., Lucas, C.H., Marzinelli, E.M., Mumby, P.J., Sharples, J., Smith, I.P., and Swearer, S.E., (eds.) Oceanography and Marine Biology: An Annual Review. Taylor & Francis, pp. 35-80.
Wangchuk, Phurpa, Mandal, Subash C., Jamtsho, Tenzin, Imane, Ouasti, Bekkouch, Oussama, Amrani, Souliman, Bussman, Rainer W., Chaachouay, Noureddine, and Elachouri, Mostafa (2023) Zingiber officinale Roscoe (ZINGIBERACEAE). In: Bussmann, Rainer W., Elachouri, Mostafa, and Kikvidze, Zaal, (eds.) Ethnobotany of Northern Africa and Levant. Ethnobotany of Mountain Regions . Springer, Cham, Switzerland.
Crayn, Darren M., and Jago, Robert L. (2022) Banks and Solander search for plants in ‘New Holland’. In: Kirkpatrick, Rod, Kowland, Margaret, Kerr, Ruth, and Donovan, Val, (eds.) Captain Cook in Queensland. The Royal Historical Society of Queensland, Brisbane, QLD, Australia, pp. 98-121.
Cernusak, Lucas, and Ubierna, Nerea (2022) Carbon Isotope Effects in Relation to CO2 Assimilation by Tree Canopies. In: Siegwolf, Rolf T.W., Brooks, J. Renée, Roden, John, and Saurer, Matthias, (eds.) Stable Isotopes in Tree Rings: Inferring Physiological, Climatic and Environmental Responses. Tree Physiology, 8 . Springer, Cham, Switzerland, pp. 291-310.
Rummer, Jodie L., and Illing, Björn (2022) Chapter 7 - Coral reef fishes in a multi-stressor world. In: Strailey, Katherine K., and Suski, Cory D., (eds.) Fish Physiology. Elsevier, Cambridge, United States, pp. 325-391.
Dalling, James, Cernusak, Lucas, Chen, Yu-yen, Slot, Martijn, Sarmiento, Carolina, and Zalamea, Paul-Camilo (2022) Effect of climate change on regeneration of plants from seeds in tropical wet forests. In: Baskin, Carol C., and Baskin, Jerry M., (eds.) Plant Regeneration from Seeds: A Global Warming Perspective. Academic Press, London, UK, pp. 157-168.
Wangchuk, Phurpa (2022) Important Medicinal Plants - Bhutan. In: Ozturk, Munir, and Ameenah, Gurib-Fakima Bibi, (eds.) Encyclopedia of Life Support Systems: Medicinal and Aromatic Plants of the World. UNESCO - EOLSS, Paris, France.
Lai, Xin, Schmitz, Ulf, and Vera, Julio (2022) The Role of MicroRNAs in Cancer Biology and Therapy from a Systems Biology Perspective. In: Schmitz, Ulf, Wolkenhauer, Olaf, and Vera, Julio, (eds.) The Role of MicroRNAs in Cancer Biology and Therapy from a Systems Biology Perspective. Advances in Experimental Medicine and Biology, 1385 . Springer, Cham, pp. 1-22.
Ritmejeryte, Edita, Miller, Rebecca E., Bayly, Michael J., and Boughton, Berin A. (2022) Visualization of cyanogenic glycosides in floral tissues. In: Beale, David J., Hillyer, Katie, Warden, Andrew, and Jones, Oliver, (eds.) Applied Environmental Metabolomics - Community Insights and Guidance from the Field. Elsevier, London, United Kingdom, pp. 29-44.
Schmitz, Ulf, Monteuuis, Geoffray, Petrova, Veronika, Shah, Jaynish S., and Rasko, John E.J. (2021) Computational methods for intron retention identification and quantification. In: Wolkenhauer, Olaf, Cai, Yudong, and Rozman, Damjana, (eds.) Systems Medicine: integrative, qualitative and computational approaches. Academic Press, London Wall, United Kingdom, pp. 63-74.
Yong, Jose C., Li, Norman P., and UNSPECIFIED (2021) Social-personality perspectives on parenting. In: Shackelford, Todd, and Weekes-Shackelford, Viviana, (eds.) The Oxford handbook of evolutionary psychology and parenting. Oxford handbooks series . Oxford University Press, New York, NY, USA, pp. 66-96.
Rowell, Misha Kyla, and Rymer, Tasmin Lee (2020) Rodentia cognition. In: Vonk, J., and Shackelford, T.K., (eds.) Encyclopedia of Animal Cognition and Behavior. Springer Nature, Cham, Switzerland, pp. 1-9.
Schmitz, Ulf, Gupta, Shailendra K., Vera, Julio, and Wolkenhauer, Olaf (2019) Computational approaches in microRNA biology. In: Narayan, Roger, (ed.) Encyclopedia of Biomedical Engineering. Elsevier, Amsterdam, The Netherlands, pp. 317-330.
Rymer, Tasmin Lee (2019) Parental investment. In: Vonk, J, and Shackelford, T.K., (eds.) Encyclopedia of Animal Cognition and Behavior. Springer Nature, Cham, Switzerland, pp. 1-10.
Amirkhah, Raheleh, Meshkin, Hojjat Naderi, Farazmand, Ali, Rasko, John E.J., and Schmitz, Ulf (2017) Computational and experimental identification of tissue-specific MicroRNA targets. In: Dalmay, Tamas, (ed.) MicroRNA Detection and Target Identification: methods and protocols. Methods in Molecular Biology, 1580 . Humana Press Inc., New York, NY, USA, pp. 127-147.
Cockburn, Andrew, Brouwer, Lyanne, Margraf, Nicolas, Osmond, Helen L., and van de Pol, Martijn (2016) Superb fairy-wrens: making the worst of a good job. In: Koenig, Walter D., Dickinson, Janis L., and den Ridder, Stef, (eds.) Cooperative Breeding in Vertebrates: studies of ecology, evolution, and behavior. Cambridge University Press, Cambridge, UK, pp. 133-149.
Vera, Julio, Wolkenhauer, Olaf, and Schmitz, Ulf (2014) Cancer Systems Biology: Current Achievements in – Omics Data Analysis, Network Reconstruction and Mathematical Modelling. In: UNSPECIFIED, (ed.) Encyclopedia of Life Sciences. John Wiley & Sons, Chichester, UK, pp. 1-12.
Ens, Bruno, van de Pol, Martijn, and Goss-Custard, John D. (2014) The study of career decisions: Oystercatchers as social prisoners. In: Naguib, Marc, Barrett, Louise, Brockmann, H. Jane, Healy, Sue, Mitani, John C., Roper, Timothy J., and Simmons, Leigh W., (eds.) Advances in the Study of Behavior. Elsevier, Kidlington, Oxford, UK, pp. 343-420.
de Matos, Paula, Adams, Nico, Hastings, Janna, Moreno, Pablo, and Steinbeck, Christoph (2011) A Database for Chemical Proteomics: ChEBI. In: Drewes, Gerard, and Bantscheff, Marcus, (eds.) Chemical Proteomics: methods and protocols. Methods in Molecular Biology, 803 . Springer, New York, NY, USA, pp. 273-296.
Report
Pratchett, Morgan S., Caballes, Ciemon F., Burn, Deborah, Doll, Peter C., Chandler, Josie F., Doyle, Jason R., and Uthicke, Sven (2022) Scooter-assisted large area diver-based (SALAD) visual surveys to test for renewed outbreaks of crown-of-thorns starfish (Acanthaster cf. solaris) in the northern Great Barrier Reef. Report. Australian Government.
Oosterbeek, K.H., van de Pol, Martijn, De Jonge, Martin L., Smit, Cor J., and Ens, Bruno J. (2006) Scholekster populatie studies - Bijdrage aan de zoektocht naar de oorzaken van de sterke achteruitgang van de Scholekster in het Waddengebied / [Identifying causes of the strong decline in oystercatcher population numbers in the Wadden Sea estuary]. Report. Wageningen Environmental Research, Wageningen, The Netherlands.
Conference Item
Napier, Thomas, Ahn, Euijoon, Allen-Ankins, Slade, and Lee, Ickjai (2023) An Optimised Grid Search Based Framework for Robust Large-Scale Natural Soundscape Classification. In: Lecture Notes in Computer Science (14471) pp. 468-479. From: AI 2023: 36th Australasian Joint Conference on Artificial Intelligence, 28 November - 1 December 2023, Brisbane, QLD, Australia.
Longmuir, Daniel N.R., Hoskins, Andrew J., and Hickson, R.I. (2023) A metapopulation model of Little Red Flying Fox population dynamics across Queensland. In: Proceedings of the 25th International Congress on Modelling and Simulation. pp. 517-523. From: MODSIM 2023: 25th International Congress on Modelling and Simulation, 9-14 July 2023, Darwin, NT, Australia.
Gamage, Hasini Nakulugamuwa, Chetty, Madhu, Shatte, Adrian, and Hallinan, Jennifer (2022) Ensemble Regression Modelling for Genetic Network Inference. In: Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology. From: CIBCB 2022: IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 15-17 August 2022, Ottawa, Canada.
Settle, Damian, and Cernusak, Lucas (2022) Growing Strangler Figs in Coconuts. Ideation of Carbon-negative, Living Infrastructure. In: Community Empowerment, Sustainable Cities, and Transformative Economies. pp. 167-189. From: BEMAS: 1st International Conference in Business, Economics, Management, and Sustainability, 2-3 July 2021, Cairns, QLD, Australia.
Gill, Jaskaran, Chetty, Madhu, Shatte, Adrian, and Hallinan, Jennifer (2022) Integrating steady-state and dynamic gene expression data for improving genetic network modelling. In: Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology. From: CIBCB 2022: IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 15-17 August 2022, Ottawa, Canada.
Gill, Jaskaran, Chetty, Madhu, Shatte, Adrian, and Hallinan, Jennifer (2021) Dynamically Regulated Initialization for S-system Modelling of Genetic Networks. In: Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology. From: CIBCB 2021: IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 13-15 October 2021, Melbourne, VIC, Australia.
Gamage, Hasini Nakulugamuwa, Chetty, Madhu, Shatte, Adrian, and Hallinan, Jennifer (2021) An Efficient Boolean Modelling Approach for Genetic Network Inference. In: Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology. From: CIBCB 2021: IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 13-15 October 2021, Melbourne, VIC, Australia.
Gamage, Hasini Nakulugamuwa, Chetty, Madhu, Shatte, Adrian, and Hallinan, Jennifer (2021) Efficient Ensemble Feature Selection Based Boolean Modelling for Genetic Network Inference. In: Supplemental Proceedings Of Short Papers (Non-peer reviewed) of IEEE CIBCB 2021. pp. 19-20. From: CIBCB 2021: 18th IEEE International Conference in Computational Intelligence in Bioinformatics and Computational Biology, 13-15 October 2021, Melbourne, Australia.
Gill, Jaskaran, Chetty, Madhu, Shatte, Adrian, and Hallinan, Jennifer (2021) Use of known gene-gene interactions in S-system based GRN inference. In: Supplemental Proceedings Of Short Papers (Non-peer reviewed) of IEEE CIBCB 2021. pp. 21-22. From: CIBCB 2021: 18th IEEE International Conference in Computational Intelligence in Bioinformatics and Computational Biology, 13-15 October 2021, Melbourne, Australia.
Riddell, Pia, Paris, Monique C.J., Joone, Carolynne, Pageat, Patrick, Ganswindt, Andre, Parker, Daniel M., Du Plessis, Cole, and Paris, Damien B.B.P. (2020) Novel appeasing pheromones to minimize stress during metapopulation management of African wild dogs. In: Abstracts from the 33rd Annual Conference of the Australasian Wildlife Management Society. p. 44. From: 33rd Annual Conference of the Australasian Wildlife Management Society, 8-10 December 2020, Online Event.
Wu, Siyuan, Cui, Tiangang, and Tian, Tianhai (2019) Mathematical Modelling of Genetic Network for Regulating the Fate Determination of Hematopoietic Stem Cells. In: Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine. pp. 2167-2173. From: BIBM 2018: IEEE International Conference on Bioinformatics and Biomedicine, 3-6 December 2018, Madrid, Spain.
Adams, Nico, Hennig, Christian, Hoehndorf, Robert, Oellrich, Anika, Rebholz-Schuhmann, Dietrich, and Hansen, Gesine (2010) The Ontology of Primary Immunodeficiency Diseases (PIDs): Using PIDs to Rethink the Ontology of Phenotypes. In: [Presented at the OBML 2010 Workshop]. IMISE-Report Ne 2/2010. From: OBML 2010: Ontologien in Biomedizin und Lebenswissenschaften, 9-10 September 2010, Mannheim, Germany.
Kinobe, Robert, Soong, Jonathan, Brien, James, Longo, Lawrence, and Nakatsu, Kanji (2005) Heme Oxygenase Activity in Fetal and Adult Ovine Tissue: Effects of High altitude-induced Long-term Hypoxemia. In: Pediatric Research (58) p. 1081. From: 3rd International Congree on Developmental Origins of Health & Disease, 16-19 Nov 2005, Toronto, Canada.
Book
Schmitz, Ulf, Wolkenhauer, Olaf, and Vera-González, Julio (2022) Systems Biology of MicroRNAs in Cancer. Advances in Experimental Medicine and Biology, 1385 . Springer Cham.
Thesis
Lubitz, Nicolas (2023) Context-dependent movement behaviour in marine predators: the causes and consequences of behavioural variability. PhD thesis, James Cook University.
Zhang, Jia (2023) Exploiting whole-genome sequencing to understand the evolution of corals and their symbionts. PhD thesis, James Cook University.
Reinhold, Linda Melissa (2023) Photoluminescence in fur. Masters (Research) thesis, James Cook University.
Doll, Peter C. (2023) Processes and patterns in larval settlement of crown-of-thorns starfish (Acanthaster cf. solaris). PhD thesis, James Cook University.
Wheeler, Carolyn Rose (2023) Quantifying life history energetics of an oviparous elasmobranch subject to future warming water. PhD thesis, James Cook University.
Singh Ramesh, Arun (2023) Temperature and soil nutrient availability shape tree responses to elevation in the Australian Wet Tropics: growth, physiology, and chemistry. PhD thesis, James Cook University.
Fisher, Eric E. (2023) The physical and biological processes driving fish aggregation behaviour. PhD thesis, James Cook University.
Saper, Julia (2022) Augmented coral health: linking heterotrophic diets to the acquisition of probiotics in symbiotic scleractinia. Masters (Research) thesis, James Cook University.
Takjoo, Rozita (2022) Characterisation of disulfide-rich peptides exploring potential wound healing properties. PhD thesis, James Cook University.
Saggiomo, Silvia Luiza de Andrade (2022) Characterization of marine venoms. PhD thesis, James Cook University.
Schmidt, Casey Ann (2022) Characterization of peptides derived from marine organisms. PhD thesis, James Cook University.
Narvaez, Pauline (2022) Cleaning symbiosis and the disease triangle. PhD thesis, James Cook University.
Swan, Thomas Stanley Tonks (2022) Ecology and population genomics of Aedes albopictus in the Torres Strait, Australia. PhD thesis, James Cook University.
Salamena, Gerry Giliant (2022) Flushing processes in the shallow-silled tropical fjord of Ambon Bay, eastern Indonesia. PhD thesis, James Cook University.
O'Brien, Paul (2022) Host-microbe symbiosis and coevolution in coral reef invertebrates. PhD thesis, James Cook University.
Greenfield, Melinda Jane (2022) Interactions among fungi, ants, and the ant-plant Myrmecodia beccarii. PhD thesis, James Cook University.
Rowell, Misha Kyla (2022) Ontogeny of problem solving in a native Australian rodent, the fawn-footed mosaic-tailed rat Melomys cervinipes. PhD thesis, James Cook University.
Cooper, Madalyn K. (2022) Resolving the global distribution of sawfishes (family Pristidae) using environmental DNA. PhD thesis, James Cook University.
Noonan, Sam Hamilton Croft (2022) Responses of corals and coral reef ecosystems to ocean acidification under variable temperature and light. PhD thesis, James Cook University.
Evans, Edward Robert Jonathan (2022) Venom chemistry and ecology of Australian scorpions. PhD thesis, James Cook University.
Maxwell, Stephen John (2022) A revision of Strombus urceus Linné, 1758. PhD thesis, James Cook University.
Horowitz, Jeremy (2022) The taxonomy, biodiversity, and evolutionary history of black corals (order Antipatharia). PhD thesis, James Cook University.
Grinblat, Mila (2021) Biogeography, reproductive biology and early development in scleractinian corals. PhD thesis, James Cook University.
Toft, Casey J. (2021) Defining the ancestral replication fork trap in Tus-dependent bacteria. Masters (Research) thesis, James Cook University.
Marc, Adrien François (2021) Development of advanced reproductive techniques to characterize fertility and accelerate selective breeding in barramundi (Lates calcarifer). PhD thesis, James Cook University.
Kuek, Felicity W.I. (2021) Dimethylsulphoniopropionate (DMSP) metabolism within the coral holobiont. PhD thesis, James Cook University.
Joyce, Elizabeth Marie (2021) Evolution of the northern Australian flora: role of the Sunda-Sahul Floristic Exchange. PhD thesis, James Cook University.
Downie, Adam Tyler (2021) How do coral reef fishes develop into athletes? PhD thesis, James Cook University.
Wilkinson, Adam (2021) Investigating potential co-factors of Fibropapillomatosis development in Chelonia mydas of the Great Barrier Reef. PhD thesis, James Cook University.
Spinks, Rachel K. (2021) Phenotypic plasticity to warming in coral reef fishes: the importance of sex and exposure timing within and between generations. PhD thesis, James Cook University.
Hirschfeld, Maximilian (2021) Population structure and connectivity of demersal sharks in isolation. PhD thesis, James Cook University.
Rowley, Olivia C. (2021) Rethinking biological tools for logistically difficult species: a case study - the Irukandji (Carukia barnesi) and Box Jellyfish (Chironex fleckeri). PhD thesis, James Cook University.
Gagul, Janet (2021) Systematics and evolution of the genus Elaeocarpus L. (Elaeocarpaceae). PhD thesis, James Cook University.
Hemingson, Christopher Rae (2021) The colours of coral reef fishes. PhD thesis, James Cook University.
Whitelaw, Brooke (2021) The iridescent enigma: genome evolution and species boundaries of the blue-ringed octopus species complex (Octopodidae: Hapalochlaena). PhD thesis, James Cook University.
Kjeldsen, Shannon Rikke (2020) Addressing koala conservation management needs: applying novel genomic methods and assessing ecological exchangeability and genetic diversity across the species range. PhD thesis, James Cook University.
Schlaefer, Jodie Anne (2020) Determining the population structures of cubozoan jellyfishes with biophysical modelling. PhD thesis, James Cook University.
Terraneo, Tullia Isotta (2020) Diversity, phylogeography and taxonomy of hard corals in the genus Porites. PhD thesis, James Cook University.
Bouyoucos, Ian Alexander (2020) Ecological energetics of climate change for tropical sharks. PhD thesis, James Cook University.
Gordon, Benjamin R. (2020) Metabolic profiling of environmental stress in Scleractinian corals. PhD thesis, James Cook University.
Lovadi, Irwan (2020) Nitrogen economies and trapping capacities of Australian tropical Drosera. PhD thesis, James Cook University.
Lowe, Jake R. (2020) Relative effects of environmental variation and fishing on the demography and ecology of tropical wrasses. PhD thesis, James Cook University.
Aird, Samantha Jayne (2020) Socio-ecological dynamics in mollusc fisheries: a case study from the Keppel Bay Islands, Great Barrier Reef, Australia. PhD thesis, James Cook University.
Tsai, Cheng-Han (2020) Variation in relative species abundance of reef fishes: drivers and ecosystem impacts. PhD thesis, James Cook University.
Buitrago, Geraldine (2020) The anti-colitic properties of hookworm protein Na-AIP-1. PhD thesis, James Cook University.
Siqueira Correa, Alexandre (2020) The evolution, macroecology and biogeography of coral reef fishes: a trophic perspective. PhD thesis, James Cook University.
Llewelyn, Victoria Kathleen (2019) Percutaneous absorption in frogs: in vitro and in vivo studies. Developing models for disease treatment and environmental risk management. PhD thesis, James Cook University.
Zozaya, Stephen Michael (2019) Using pheromones to understand cryptic lizard diversity. PhD thesis, James Cook University.
van de Pol, Martijn (2006) State-dependent life-history strategies: a long-term study on Oystercatchers. PhD thesis, University of Groningen.
Creative Work
van de Pol, M., Brouwer, L., and Cockburn, A. (2020) R package hiphop: parentage assignment using bi-allelic genetic markers. Statistical software. [Creative Work]
Other
van de Pol, Martijn, Brouwer, Lyanne, and Cockburn, Andrew (2020) R package HIPHOP: parentage assignment using bi-allelic genetic markers. Comprehensive R Archive Network (CRAN).