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Aulsebrook, Lucinda C., Wong, Bob B.M., and Hall, Matthew D. (2024) Pharmaceutical pollution alters the cost of bacterial infection and its relationship to pathogen load. Proceedings of the Royal Society of London Series B, Biological Sciences, 291 (2014). 20231273.

Athukorala, Ajani, Donnelly, Camilla M., Pavan, Silvia, Nematollahzadeh, Sepehr, Djossou, Victoria Atalie, Nath, Babu, Helbig, Karla J., Di Iorio, Enzo, McSharry, Brian P., Alvisi, Gualtiero, Forwood, Jade K., and Sarker, Subir (2024) Structural and functional characterization of siadenovirus core protein VII nuclear localization demonstrates the existence of multiple nuclear transport pathways. Journal of General Virology, 105 (1). 001928.

Aulsebrook, Lucinda C., Wong, Bob B.M., and Hall, Matthew D. (2023) Can pharmaceutical pollution alter the spread of infectious disease? A case study using fluoxetine. Philosophical Transactions of the Royal Society B: Biological Sciences, 378 (1873). 20220010.

Athukorala, Ajani, Lacasse, Claude, Curtiss, Jeffrey B., Phalen, David N., and Sarker, Subir (2023) Characterisation of a novel aviadenovirus associated with disease in tawny frogmouths (Podargus strigoides). Virology, 588. 109904.

Alvarez-Noriega, Mariana, Madin, Joshua S., Baird, Andrew H., Dornelas, Maria, and Connolly, Sean R. (2023) Disturbance-induced changes in population size structure promote coral biodiversity. American Naturalist, 202 (5). pp. 604-615.

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Ahasan, Syed Ali, De Elías-Escribano, Alejandra, Artigas, Patricio, Alam, Mohammad Zahangir, Mondal, M. Motahar Hussain, Blair, David, Chowdhury, Emdadul Haque, Bargues, M. Dolores, and Mas-Coma, Santiago (2023) Wide variation of heterozygotic genotypes of recent fasciolid hybrids from livestock in Bangladesh assessed by rDNA internal transcribed spacer region sequencing and cloning. One Health, 17. 100614.

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Aljaafari, Mariam Nasser, Alkhoori, Maryam Abdulraheem, Hag-Ali, Mohammed, Cheng, Wan-Hee, Lim, Swee-Hua-Erin, Loh, Jiun-Yan, and Lai, Kok-Song (2022) Contribution of Aldehydes and Their Derivatives to Antimicrobial and Immunomodulatory Activities. Molecules, 27. 3589.

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Amos, Brogan A., Hoffmann, Ary A., Staunton, Kyran M., Lau, Meng-Jia, Burkot, Thomas R., and Ross, Perran A. (2022) Long-range but not short-range attraction of male Aedes aegypti (Diptera: Culicidae) mosquitoes to humans. Journal of Medical Entomology, 59 (1). pp. 83-88.

Amos, Brogan A., and Carde, Ring T. (2022) Verifying the efficiency of the Biogents Sentinel trap in the field and investigating microclimatic influences on responding Aedes aegypti behavior. Journal of Vector Ecology, 47 (2). pp. 166-170.

Aulsebrook, Lucinda C., Wong, Bob B.M., and Hall, Matthew D. (2022) Warmer temperatures limit the effects of antidepressant pollution on life-history traits. Proceedings of the Royal Society of London Series B, Biological Sciences, 289 (1968). 20212701.

Antoun, Elie, Migliavacca, Eugenia, Garratt, Emma S., Barton, Sheila J., Titcombe, Phil, Westbury, Leo D., Baczynska, Alica, Dodds, Richards, Roberts, Helen C., Sayer, Avan A., Shaw, Sarah, Syddall, H.E., Sheppard, Allan, McFarlane, Craig, Karnani, Neerja, Forrester, Terrence, Cooper, Cyrus, Feige, Jerome N., Patel, Harnish P., Godfrey, Keith M., Lillycrop, Karen A., and EpiGen Global Research Consortium (2021) Altered H19/miR‐675 expression in skeletal muscle is associated with low muscle mass in community‐dwelling older adults. JCSM Rapid Communications, 4 (2). pp. 207-221.

Alharbi, Adel B., Schmitz, Ulf, Bailey, Charles G., and Rasko, John E.J. (2021) CTCF as a regulator of alternative splicing: new tricks for an old player. Nucleic Acids Research, 49 (14). pp. 7825-7838.

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Ashwood, Lauren M., Mitchell, Michela L., Madio, Bruno, Hurwood, David A., King, Glenn F., Undheim, Eivind A.B., Norton, Raymond S., and Prentis, Peter J. (2021) Tentacle morphological variation coincides with differential expression of toxins in sea anemones. Toxins, 13 (7). 452.

Alharbi, Adel B., Schmitz, Ulf, Marshall, Amy D., Vanichkina, Darya, Nagarajah, Rajini, Vellozzi, Melissa, Wong, Justin J.L., Bailey, Charles G., and Rasko, John E.J. (2020) Ctcf haploinsufficiency mediates intron retention in a tissue-specific manner. RNA Biology, 18 (1). pp. 93-103.

Athukorala, Ajani, Forwood, Jade K., Phalen, David N., and Sarker, Subir (2020) Molecular Characterisation of a Novel and Highly Divergent Passerine Adenovirus 1. Viruses, 12 (9). 1036.

Aulsebrook, Lucinda C., Bertram, Michael G., Martin, Jake M., Aulsebrook, Anne E., Brodin, Tomas, Evans, Jonathan P., Hall, Matthew D., O’Bryan, Moira K., Pask, Andrew J., Tyler, Charles R., and Wong, Bob B.M. (2020) Reproduction in a polluted world: implications for wildlife. Reproduction, 160 (2). R13-R23.

Aird, Samantha Jayne (2020) Socio-ecological dynamics in mollusc fisheries: a case study from the Keppel Bay Islands, Great Barrier Reef, Australia. PhD thesis, James Cook University.

Allen, Andrew M., Ens, Bruno J., van de Pol, Martijn, Van Der Jeugd, Henk, Frauendorf, Magali, Van Der Kolk, Henk Jan, Oosterbeek, Kees, Nienhuis, Jeroen, and Jongejans, Eelke (2019) Colour-ring wear and loss effects in citizen science mark-resighting studies. Avian Research, 10 (1). 11.

Arnold, Sarah E.J., Forbes, Samantha J., Hall, David R., Farman, Dudley I., Bridgemohan, Puran, Spinelli, Gustavo R., Bray, Daniel P., Perry, Garvin B., Grey, Leroy, Belmain, Steven R., and Stevenson, Philip C. (2019) Floral odors and the interaction between pollinating Ceratopogonid midges and cacao. Journal of Chemical Ecology, 45. pp. 869-878.

Allen, Andrew, Ens, Bruno J., van de Pol, Martijn, Van Der Jeugd, Henk, Frauendorf, Magali, Oosterbeek, Kees, and Jongejans, Eelke (2019) Seasonal survival and migratory connectivity of the Eurasian Oystercatcher revealed by citizen science. Auk, 136 (1). pp. 1-17.

Amirkhah, Raheleh, Meshkin, Hojjat Naderi, Farazmand, Ali, Rasko, John E.J., and Schmitz, Ulf (2017) Computational and experimental identification of tissue-specific MicroRNA targets. In: Dalmay, Tamas, (ed.) MicroRNA Detection and Target Identification: methods and protocols. Methods in Molecular Biology, 1580 . Humana Press Inc., New York, NY, USA, pp. 127-147.

Amirkhah, Raheleh, Farazmand, Ali, Gupta, Shailendra K., Ahmadi, Hamed, Wolkenhauer, Olaf, and Schmitz, Ulf (2015) Naïve Bayes classifier predicts functional microRNA target interactions in colorectal cancer. Molecular BioSystems, 11. pp. 2126-2134.

Adams, Nico, Hoehndorf, Robert, Gkoutos, Georgios V., Hansen, Gensine, and Hennig, Christian (2011) PIDO: the primary immunodeficiency disease ontology. Bioinformatics, 27 (22). pp. 3193-3199.

Adams, Nico, Hennig, Christian, Hoehndorf, Robert, Oellrich, Anika, Rebholz-Schuhmann, Dietrich, and Hansen, Gesine (2010) The Ontology of Primary Immunodeficiency Diseases (PIDs): Using PIDs to Rethink the Ontology of Phenotypes. In: [Presented at the OBML 2010 Workshop]. IMISE-Report Ne 2/2010. From: OBML 2010: Ontologien in Biomedizin und Lebenswissenschaften, 9-10 September 2010, Mannheim, Germany.

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Bourne, David G., Sato, Yui, and Smith, Hillary A. (2024) Microbes guide corals looking to find a home. Trends in Microbiology, 32 (2). pp. 120-121.

Ballard, J. William O., Field, Matt A., Edwards, Richard J., Wilson, Laura A.B., Koungoulos, Loukas G., Rosen, Benjamin D., Chernoff, Barry, Dudchenko, Olga, Omer, Arina, Keilwagen, Jens, Skvortsova, Ksenia, Bogdanovic, Ozren, Chan, Eva, Zammit, Robert, Hayes, Vanessa, and Aiden, Erez Lieberman (2023) The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology. GigaScience, 12. giad018.

Bertola, Lorenzo V., Higgie, Megan, Zenger, Kyall R., and Hoskin, Conrad J. (2023) Conservation genomics reveals fine-scale population structuring and recent declines in the Critically Endangered Australian Kuranda Treefrog. Conservation Genetics, 24. pp. 249-264.

Borghi, Stefano, Clements, Matthew, Webb, Monique, Bostock, Helen, Webster, Jody M., McNeil, Mardi, Nothdurft, Luke, and Byrne, Maria (2023) Discovery of the dendrophylliid scleractinian Heteropsammia cochlea (Spengler, 1781) in Halimeda bioherms of the Northern Great Barrier Reef. Marine Biodiversity, 53 (3). 39.

Brown, Joel J., Jandová, Anna, Jeffs, Christopher T., Higgie, Megan, Nováková, Eva, Lewis, Owen T., and Hrček, Jan (2023) Microbiome Structure of a Wild Drosophila Community along Tropical Elevational Gradients and Comparison to Laboratory Lines. Applied and Environmental Microbiology, 89 (5).

Brinkman, Diane L., Flores, Florita, Luter, Heidi M., Nordborg, F. Mikaela, Brooks, Maxime, Parkerton, Thomas F., and Negri, Andrew P. (2023) Sensitivity of the Indo-Pacific coral Acropora millepora to aromatic hydrocarbons. Environmental Pollution, 332. 121963.

Blair, David, Cannon, Lester R.G., Littlewood, David, Olson, Peter D., and Sewell, Kim B. (2023) The Temnocephalidae (Platyhelminthes): molecular data illuminate the evolution of an ancient group of symbiotic flatworms. Systematics and Biodiversity, 21 (1). 2174611.

Binks, Oliver, Cernusak, Lucas A., Liddell, Michael, Bradford, Matt, Coughlin, Ingrid, Bryant, Callum, Palma, Ana C., Hoffmann, Luke, Alam, Iftakharul, Carle, Hannah J., Rowland, Lucy, Oliveira, Rafael S., Laurance, Susan G.W., Mencuccini, Maurizio, and Meir, Patrick (2023) Vapour pressure deficit modulates hydraulic function and structure of tropical rainforests under nonlimiting soil water supply. New Phytologist, 240 (4). pp. 1405-1420.

Bougher, Neale L., and Barrett, Matthew D. (2023) Volvopluteus earlei and Volvariella taylorii: new fungi for Western Australia (Basidiomycota: Agaricales: Pluteaceae). Nuytsia, 34. pp. 187-201.

Bertola, Lorenzo V., Hoskin, Conrad J., Jones, David B., Zenger, Kyall R., McKnight, Donald T., and Higgie, Megan (2023) The first linkage map for Australo-Papuan Treefrogs (family: Pelodryadidae) reveals the sex-determination system of the Green-eyed Treefrog (Litoria serrata). Heredity, 131. pp. 263-272.

Bowden, Casey L., Streit, Robert P., Bellwood, David R., and Tebbett, Sterling B. (2022) A 3D perspective on sediment turnover and feeding selectivity in blennies. Marine Pollution Bulletin, 180. 113799.

Brucato, Nicolas, André, Mathilde, Hudjashov, Georgi, Mondal, Mayukh, Cox, Murray P., Leavesley, Matthew, and Ricaut, François Xavier (2022) Chronology of natural selection in Oceanian genomes. iScience, 25 (7). 104583.

Benestan, Laura, Loiseau, Nicolas, Guerin, Pierre-Edouard, Perez-Ruzafa, Angel, Forcada, Aitor, Arcas, Esther, Lenfant, Philippe, Mallol, Sandra, Goni, Raquel, Velez, Laure, Mouillot, David, Puebla, Oscar, and Manel, Stephanie (2022) Contrasting influence of seascape, space and marine reserves on genomic variation in multiple species. Ecography, 2023 (1). e06127.

Barrett, Russell L., and Barrett, Matthew D. (2022) Dianella lignosa (Asphodelaceae), a new species from the north-west Kimberley region of Western Australia. Telopea, 25. pp. 197-202.

Binks, Oliver, Cernusak, Lucas A., Liddell, Michael, Bradford, Matt, Coughlin, Ingrid, Carle, Hannah, Bryant, Callum, Dunn, Elliot, Oliveira, Rafael, Mencuccini, Maurizio, and Meir, Patrick (2022) Forest system hydraulic conductance: partitioning tree and soil components. New Phytologist, 233 (4). pp. 1667-1681.

Bloesch, Zoë, Nauheimer, Lars, Almeida, Thais Elias, Crayn, Darren, and Field, Ashley Raymond (2022) HybPhaser identifies hybrid evolution in Australian Thelypteridaceae. Molecular Phylogenetics and Evolution, 173. 107526.

Blair, David (2022) Lung flukes of the genus Paragonimus: ancient and re-emerging pathogens. Parasitology, 149 (10). pp. 1286-1295.

Bernal, Moisés A., Schmidt, Elliott, Donelson, Jennifer M., Munday, Philip L., and Ravasi, Timothy (2022) Molecular Response of the Brain to Cross-Generational Warming in a Coral Reef Fish. Frontiers in Marine Science, 9. 784418. pp. 1-16.

Bauman, David, Fortunel, Claire, Cernusak, Lucas A., Bentley, Lisa P., McMahon, Sean M., Rifai, Sami W., Aguirre-Gutiérrez, Jesús, Oliveras, Imma, Bradford, Matt, Laurance, Susan G.W., Delhaye, Guillaume, Hutchinson, Michael F., Dempsey, Raymond, McNellis, Brandon E., Santos-Andrade, Paul E., Ninantay-Rivera, Hugo R., Chambi Paucar, Jimmy R., Phillips, Oliver L., and Malhi, Yadvinder (2022) Tropical tree growth sensitivity to climate is driven by species intrinsic growth rate and leaf traits. Global Change Biology, 28 (4). pp. 1414-1432.

Bauman, David, Fortunel, Claire, Delhaye, Guillaume, Malhi, Yadvinder, Cernusak, Lucas A., Bentley, Lisa Patrick, Rifai, Sami W., Aguirre-Gutierrez, Jesus, Menor, Imma Oliveras, Phillips, Oliver L., McNellis, Brandon E., Bradford, Matt, Laurance, Susan G.W., Hutchinson, Michael F., Dempsey, Raymond, Santos-Andrade, Paul E., Ninantay-Rivera, Hugo R., Chambi Paucar, Jimmy R., and McMahon, Sean M. (2022) Tropical tree mortality has increased with rising atmospheric water stress. Nature, 608. pp. 528-533.

Berschauer, David P., Waller, David B., and Maxwell, Stephen J. (2022) A new endemic species of Chicoreus from Savai’l, Samoa. The Festivus, 54 (2). pp. 21-28.

Barrett, Russell L., Barrett, Matthew D., and Clements, Mark A. (2022) A revision of Orchidaceae from the Kimberley region of Western Australia with new species of tropical Calochilus and Dipodium. Telopea, 25. pp. 203-270.

Barton, Jonathan A., Neil, Rachel C., Humphrey, Craig, Bourne, David G., and Hutson, Kate S. (2021) Efficacy of chemical treatments for Acropora-eating flatworm infestations. Aquaculture, 532. 735978.

Bidmos, M.A., Adebesin, A.A., Mazengenya, P., Olateju, O.I., and Adegboye, Oyelola (2021) Estimation of sex from metatarsals using discriminant function and logistic regression analyses. Australian Journal of Forensic Sciences, 53 (5). pp. 543-556.

Benettin, Paolo, Nehemy, Magali F., Cernusak, Lucas A., Kahmen, Ansgar, and McDonnell, Jeffrey J. (2021) On the use of leaf water to determine plant water source: a proof of concept. Hydrological Processes, 35 (3). e14073.

Bailey, Charles G., Gupta, Shailendra, Metierre, Cynthia, Amarasekera, Punkaja M.S., O'Young, Patrick, Kyaw, Wunna, Laletin, Tatyana, Francis, Habib, Semaan, Crystal, Sharifi Tabar, Mehdi, Singh, Krishna P., Mullighan, Charles G., Wolkenhauer, Olaf, Schmitz, Ulf, and Rasko, John (2021) Structure–function relationships explain CTCF zinc finger mutation phenotypes in cancer. Cellular and Molecular Life Sciences, 78. pp. 7519-7536.

Buitrago, Geraldine, Pickering, Darren, Ruscher, Roland, Cobos Caceres, Claudia, Jones, Linda, Cooper, Martha, Van Waardenberg, Ashley, Ryan, Stephanie, Miles, Kim, Field, Matthew, Dredge, Keith, Daly, Norelle L., Giacomin, Paul R., and Loukas, Alex (2021) A netrin domain-containing protein secreted by the human hookworm Necator americanus protects against CD4 T cell transfer colitis. Translational Research, 232. pp. 88-102.

Branconi, Rebecca, Barbasch, Tina A., Francis, Robin K., Srinivasan, Maya, Jones, Geoffrey P., and Buston, Peter M. (2020) Ecological and social constraints combine to promote evolution of non-breeding strategies in clownfish. Communications Biology, 3. 649.

Bouyoucos, Ian Alexander (2020) Ecological energetics of climate change for tropical sharks. PhD thesis, James Cook University.

Brouwer, Lyanne, and Cockburn, Andrew (2020) Experimental vacancies do not induce settlement despite habitat saturation in a cooperative breeder. Biology Letters, 16 (3). 20190757.

Bougher, Neale L., and Barrett, Matthew D. (2020) Fungi and slime moulds recorded in surveys at Kings Park and Bold Park – urban bushlands Perth, Western Australia. Western Australian Naturalist, 31 (4). pp. 191-251.

Brouwer, Lyanne, Cockburn, Andrew, and van de Pol, Martijn (2020) Integrating fitness components reveals that survival costs outweigh other benefits and costs of group living in two closely related species. American Naturalist, 195 (2). pp. 201-215.

Buitrago, Geraldine (2020) The anti-colitic properties of hookworm protein Na-AIP-1. PhD thesis, James Cook University.

Brouwer, Lyanne, and Griffith, Simon C. (2019) Extra-pair paternity in birds. Molecular Ecology, 28 (22). pp. 4864-4882.

Burguete, Alondra Schweizer, Francis, Deanne, Rosa, Jeffrey, and Ghabrial, Amin (2019) The regulation of cell size and branch complexity in the terminal cells of the Drosophila tracheal system. Developmental Biology, 451. pp. 79-85.

Bellwood, David R., Schultz, Ortwin, Siqueira Correa, Alexandre C., and Cowman, Peter F. (2019) A review of the fossil record of the Labridae. Annalen des Naturhistorischen Museums in Wien, Serie A, 121. pp. 125-193.

Banowary, Banya, Dang, Van Tuan, Sarker, Subir, Connolly, Joanne H., Chenu, Jeremy, Groves, Peter, Raidal, Shane, and Ghorashi, Seyed Ali (2018) Evaluation of Two Multiplex PCR–High-Resolution Melt Curve Analysis Methods for Differentiation of Campylobacter jejuni and Campylobacter coli Intraspecies. Avian Diseases, 62 (1). pp. 86-93.

Brouwer, Lyanne, van de Pol, Martijn, Aranzamendi, Nataly Hidalgo, Bain, Glen, Baldassarre, Daniel T., Brooker, Lesley C., Brooker, Michael G., Colombelli-Négrel, Diane, Enbody, Erik, Gielow, Kurt, Hall, Michelle L., Johnson, Allison E., Karubian, Jordan, Kingma, Sjouke A., Kleindorfer, Sonia, Louter, Marina, Mulder, Raoul A., Peters, Anne, Pruett-Jones, Stephen, Tarvin, Keith A., Thrasher, Derrick J., Varian-Ramos, Claire W., Webster, Michael S., and Cockburn, Andrew (2017) Multiple hypotheses explain variation in extra-pair paternity at different levels in a single bird family. Molecular Ecology, 26 (23). pp. 6717-6729.

Bhattacharya, Animesh, Schmitz, Ulf, Raatz, Yvonne, Schönherr, Madeleine, Kottek, Tina, Schauer, Marianne, Franz, Sandra, Saalbach, Anja, Anderegg, Ulf, Wolkenhauer, Olaf, Schadendorf, Dirk, Simon, Jan C., Magin, Thomas, Vera, Julio, and Kunz, Manfred (2015) miR-638 promotes melanoma metastasis and protects melanoma cells from apoptosis and autophagy. Oncotarget, 6. pp. 2966-2980.

Brouwer, Lyanne, van de Pol, Martijn, and Cockburn, Andrew (2014) Habitat geometry does not affect levels of extrapair paternity in an extremely unfaithful fairy-wren. Behavioral Ecology, 25 (3). pp. 531-537.

Brouwer, Lyanne, van de Pol, Martijn, and Cockburn, Andrew (2014) The role of social environment on parental care: offspring benefit more from the presence of female than male helpers. Journal of Animal Ecology, 83. pp. 491-503.

Brouwer, Lyanne, van de Pol, Martijn, Atema, Els, and Cockburn, Andrew (2011) Strategic promiscuity helps avoid inbreeding at multiple levels in a cooperative breeder where both sexes are philopatric. Molecular Ecology, 20 (22). pp. 4796-4807.

Brouwer, Lyanne, Barr, Iain, van de Pol, Martijn, Burke, Terry, Komdeur, Jan, and Richardson, David S. (2010) MHC-dependent survival in a wild population: evidence for hidden genetic benefits gained through extra-pair fertilizations. Molecular Ecology, 19 (16). pp. 3444-3455.

Bruinzeel, Leo W., van de Pol, Martijn, and Trierweiler, Christiane (2006) Competitive abilities of oystercatchers (Haematopus ostralegus) occupying territories of different quality. Journal of Ornithology, 147. pp. 457-463.

Bruinzeel, Leo W., and van de Pol, Martijn (2004) Site attachment of floaters predicts success in territory acquisition. Behavioral Ecology, 15 (2). pp. 290-296.

Bruinzeel, Leo, and van de Pol, Martijn (2003) Population decline of Oystercatchers on Schiermonnikoog. Limosa, 76 (1). 25 - 26.

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Collins, William P., Bellwood, David R., and Morais, Renato A. (2024) Small coral reef fishes with large ecological footprints. Coral Reefs, 43. pp. 233-242.

Cooper, Wendy, Zich, Frank, Nauheimer, Lars, Harrison, Melissa, and Crayn, Darren (2024) A revision of Derris and Brachypterum (Leguminosae subfamily Papilionoideae) in Australia. Australian Systematic Botany, 37. SB23030.

Cooper, W.E., Crayn, D.M., and Joyce, E.M. (2023) Aglaia fellii W.E.Cooper & Joyce (Meliaceae), a new species for Cape York Peninsula. Australian Journal of Taxonomy, 23.

Chen, Xuelei, Xu, Tian, Dowse, Harold B., Tao, Yi, Zeng, Chaoshu, Zhao, Fanyi, Ye, Haihui, and Guo, Donghui (2023) Correlation between transport and moulting of catadromous crab megalopae: The effects of starvation on rhythmic vertical migration. Marine and Freshwater Behaviour and Physiology, 56 (1-2). pp. 1-18.

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Connors, Matthew G. (2023) First record of the Zebra Grasshopper Zebratula (Acrididae: Catantopini) in Queensland, Australia. Zootaxa, 5323 (1). pp. 141-146.

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Cui, Meng-Meng, Moynier, Frédéric, Su, Ben-Xun, Dai, Wei, Hu, Yan, Rigoussen, Dimitri, Mahan, Brandon, and Le Borgne, Marie (2023) Stable potassium isotope distribution in mouse organs and red blood cells: implication for biomarker development. Metallomics, 15 (7). mfad033.

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Cernusak, Lucas, and Ubierna, Nerea (2022) Carbon Isotope Effects in Relation to CO2 Assimilation by Tree Canopies. In: Siegwolf, Rolf T.W., Brooks, J. Renée, Roden, John, and Saurer, Matthias, (eds.) Stable Isotopes in Tree Rings: Inferring Physiological, Climatic and Environmental Responses. Tree Physiology, 8 . Springer, Cham, Switzerland, pp. 291-310.

Cooper, Wendy (2022) Diospyros venablesii W.E.Cooper (Ebenaceae), a new and endemic species from the Iron Range area, Cape York Peninsula, Queensland. Telopea, 25. pp. 75-79.

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Cooper, Wendy, and Zich, Frank (2022) Reinstatement and revision of Kayea Wall. (Calophyllaceae) in Australia, including two new species from Queensland’s Wet Tropics bioregion. Austrobaileya, 12. pp. 1-13.

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Choppin, M., and Lach, L. (2022) A novel bee host cannot detect a microbial parasite, in contrast to its original host. Insectes Sociaux, 69. pp. 289-292.

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Campanyà-Llovet, Neus, Le Guitton, Marie, and Watson, Sue-Ann (2021) Long-term and seasonal changes in the life-history biology of the abyssal holothurian Pseudostichopus aemulatus from the Porcupine Abyssal Plain (North-East Atlantic). Deep-sea Research Part I: Oceanographic Research Papers, 174. 103537.

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Cernusak, Lucas A., Farha, Nahid, and Cheesman, Alexander W. (2021) Understanding how ozone impacts plant water-use efficiency. Tree Physiology, 41 (12). pp. 2229-2233.

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Chen, Jen-Tsung, and Nargar, Katharina (2020) Editorial: Orchid genomics and developmental biology. Frontiers in Plant Science, 11. 1013.

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Dowe, John, Venter, Fanie, UNSPECIFIED, and UNSPECIFIED (2023) Saribus pendulinus, a New Fan-Palm from New Guinea. Palms, 67 (1). pp. 13-25.

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Dowe, John, and Hilje Quirós, Luko (2022) Las exploraciones botánicas de Hermann Wendland en Centroamérica (1856-1857) I. De Guatemala al Valle Central de Costa Rica / Hermann Wendland’s Botanical Explorations in Central America (1856-1857) I. From Guatemala to the Central Valley in Costa Rica. Revista Comunicación, 31 (43). pp. 61-93.

Dowe, John Leslie, and Schweizer, Ernest (2022) Livistona victoriae and the North Australian Exploring Expedition 1855–1856. Palms, 66 (2). pp. 90-102.

Dekkers, Aart, and Maxwell, Stephen (2022) A New Endemic Species of Lambis Röding, 1798 From the Philippines (Mollusca: Neostromboidae: Strombidae). European Journal of Applied Sciences, 10 (1). pp. 393-400.

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Dowe, John Leslie (2020) The Australian paintings of Marianne North, 1880–1881: landscapes ‘doomed shortly to disappear’. Cunninghamia, 20.

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Lovadi, Irwan (2020) Nitrogen economies and trapping capacities of Australian tropical Drosera. PhD thesis, James Cook University.

Lowe, Jake R. (2020) Relative effects of environmental variation and fishing on the demography and ecology of tropical wrasses. PhD thesis, James Cook University.

Lebel, Teresa, Syme, Katrina, Barrett, Matt, and Cooper, Jerry (2020) Two new species of Asproinocybe (Tricholomataceae) from Australia. Muelleria, 38. pp. 77-85.

Lichtenauer, Wendy, van de Pol, Martijn, Cockburn, Andrew, and Brouwer, Lyanne (2019) Indirect fitness benefits through extra-pair mating are large for an inbred minority, but cannot explain widespread infidelity among red-winged fairy-wrens. Evolution, 73 (3). pp. 467-480.

Llewelyn, Victoria Kathleen (2019) Percutaneous absorption in frogs: in vitro and in vivo studies. Developing models for disease treatment and environmental risk management. PhD thesis, James Cook University.

Lai, Xin, Eberhardt, Martin, Schmitz, Ulf, and Vera, Julio (2019) Systems biology-based investigation of cooperating microRNAs as monotherapy or adjuvant therapy in cancer. Nucleic Acids Research, 47 (15). pp. 7753-7766.

Lim, Jin Yan, Barnett, Timothy C., Bastiani, Michele, McMahon, Kerrie-Ann, Ferguson, Charles, Webb, Richard I., Parton, Robert G., and Walker, Mark J. (2017) Caveolin 1 restricts Group A Streptococcus invasion of nonphagocytic host cells. Cellular Microbiology, 19 (12). e12772.

Lejeune, Lea, van de Pol, Martijn, Cockburn, Andrew, Louter, Marina, and Brouwer, Lyanne (2016) Male and female helper effects on maternal investment and adult survival in red-winged fairy-wrens. Behavioral Ecology, 27 (6). pp. 1841-1850.

Lai, X., Bhattacharya, A., Schmitz, U., Kunz, M., Vera, J., and Wolkenhauer, O. (2013) A systems' biology approach to study microrna-mediated gene regulatory networks. BioMed Research International, 2013. 703849.

Lai, Xin, Schmitz, Ulf, Gupta, Shailendra K., Bhattacharya, Animesh, Kunz, Manfred, Wolkenhauer, Olaf, and Vera, Julio (2012) Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs. Nucleic Acids Research, 40 (18). pp. 8818-8834.

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Morrissey, Scott J., Jerry, Dean R., and Kingsford, Michael (2024) Use of eDNA to Determine Source Locations of Deadly Jellyfish (Cubozoa) in an Open Coastal System. Coasts, 4 (1). pp. 198-212.

Morrissey, Scott J., Jerry, Dean R., and Kingsford, Michael J. (2024) Use of eDNA to test hypotheses on the ecology of Chironex fleckeri (Cubozoa). Marine Ecology Progress Series, 728. pp. 25-41.

Moller, Brittany, Buckley, Hallie R., Petchey, Peter, Hil, Greg, Kinaston, Rebecca, and King, Charlotte L. (2023) Preservation of brain material in the archaeological record: A case study in the New Zealand colonial context. Journal of Archaeological Science, 156. 105774.

Márquez, Diego A., Stuart-Williams, Hilary, Cernusak, Lucas A., and Farquhar, Graham D. (2023) Assessing the CO2 concentration at the surface of photosynthetic mesophyll cells. New Phytologist, 238 (4). pp. 1446-1460.

Manríquez, Patricio H., González, Claudio P., Jara, María Elisa, Watson, Sue-Ann, Torres, Rodrigo, Domenici, Paolo, and Duarte, Cristian (2023) Combined effects of climate change stressors and predators with contrasting feeding-digestion strategies on a mussel species. Marine Pollution Bulletin, 187. 114554.

Matias, Ambrosio Melvin A., Popovic, Iva, Thia, Joshua A., Cooke, Ira R., Torda, Gergely, Lukoschek, Vimoksalehi, Bay, Line, Kim, Sun, and Riginos, Cynthia (2023) Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef. Evolutionary Applications, 16 (2). pp. 293-310.

McMahon, Shannon J., Munday, Philip L., and Donelson, Jennifer M. (2023) Energy use, growth and survival of coral reef snapper larvae reared at elevated temperatures. Coral Reefs, 42. pp. 31-42.

McInerney, Francesca A., Gerber, Christoph, Dangerfield, Emma, Cernusak, Lucas A., Puccini, Athina, Szarvas, Steve, Singh, Tanoj, and Welti, Nina (2023) Leaf water δ 18/O, δ2H and d-excess isoscapes for Australia using region-specific plant parameters and non-equilibrium vapour. Hydrological Processes, 37 (5). e14878.

Mason, Benjamin M., Koyanagi, Mitsumasa, Sugihara, Tomohiro, Iwasaki, Makoto, Slepak, Vladlen, Miller, David J., Sakai, Yusuke, and Terakita, Akihisa (2023) Multiple opsins in a reef-building coral, Acropora millepora. Scientific Reports, 13. 1628.

Midtun, Halvard Aas, Higgie, Megan, and Hoskin, Conrad (2023) Natural history of the parasite Waddycephalus in the Townsville region of north-east Australia. Parasitology, 150 (6). pp. 505-510.

Maxwell, Stephen J., and Berschauer, David P. (2023) A New Endemic Species of Milariconus Tucker & Tenorio, 2009 (Gastropoda: Conidae) from Western Australia. The Festivus, 55 (3). pp. 170-177.

McCormick, M.I., Fakan, E.P., Vamvounis, G., Bosshard, S., Moad, C., Smyth, E., Gatenby, P., Edmiston, J., Patel, K., and Allan, B.J.M. (2023) No effects of plasticized microplastics on the body condition and reproduction of a marine fish. ICES Journal of Marine Science, 80 (5). pp. 1267-1276.

Maxwell, Stephen J., Todd, Stephanie J., and Rymer, Tasmin L. (2023) Population structure and morphology of Canarium (Canarium) incisum and Canarium (Canarium) esculentum (Mollusca: Neostromboidae: Strombidae) from the Philippines with preliminary notes on aperture colouration based on DArTseq data. Acta Zoologica, 104 (2). pp. 255-261.

Maxwell, Stephen J. (2023) A Review of Neodilatilabrum Dekkers, 2008 (Mollusca: Neostromboidae: Strombidae) Resulting in a New Species from Japan. The Festivus, 55 (3). pp. 178-198.

Maxwell, Stephen J., and Berschauer, David P. (2023) A Review of the Relegamoria molleri Species Complex (Gastropoda: Volutoidea: Volutidae) from Eastern Australia. The Festivus, 55 (4). pp. 271-294.

Maxwell, Stephen J. (2023) Taxonomic Murder and Ethical Practice: A Reply to Alf and Wieneke (2023) on the Taxonomic State of Lambis vertriesti Dekkers & Maxwell, 2022 (Neostromboidae; Strombidae) and a Range Extension for that Species. European Journal of Applied Sciences, 11 (5). pp. 46-48.

Martinez-Baena, Francisco, Raoult, Vincent, Taylor, Matthew D., Gaston, Troy F., McLeod, Ian, and Bishop, Melanie J. (2023) Trophic Structure of Temperate Australian Oyster Reefs Within the Estuarine Seascape: a Stable Isotope Analysis. Estuaries and Coasts, 46. pp. 844-859.

Martínez‐Sancho, Elisabet, Cernusak, Lucas A., Fonti, Patrick, Gregori, Alessandro, Ullrich, Bastian, Pannatier, Elisabeth Graf, Gessler, Arthur, Lehmann, Marco M., Saurer, Matthias, and Treydte, Kerstin (2023) Unenriched xylem water contribution during cellulose synthesis influenced by atmospheric demand governs the intra‐annual tree‐ring δ18O signature. New Phytologist, 240 (5). pp. 1743-1757.

Motson, Katie, Hutson, Kate S., and Hoey, Andrew S. (2023) Variation in the parasite communities of three co-occurring herbivorous coral reef fishes. Journal of Fish Biology, 102 (4). pp. 757-772.

Meagher, David, Seppelt, Rod D., Cairns, Andi, and Franks, Andrew (2023) The family Calymperaceae (Bryophyta) in Australia. Part 5: The genus Syrrhopodon. Telopea, 26. pp. 75-114.

Marcoli, R., Jones, D.B., Massault, C., Marc, A.F., Moran, M., Harrison, P.J., Cate, H.S., Lopata, A.L., and Jerry, D.R. (2023) The skin structure in multiple color variants of barramundi (Lates calcarifer): A histological, immunohistochemical and ultrastructural overview. Aquaculture, 576. 739859.

Mehmood, Shahid, Palmer-Young, Evan, and Huang, Wei-Fone (2023) The threat of honey bee RNA viruses to yellow-legged hornets: Insights from cross-species transmission events. Journal of Invertebrate Pathology, 201. 108005.

MacHordom, Annie, Ahyong, Shane T., Andreakis, Nikos, Baba, Keiji, Buckley, David, García-Jiménez, Ricardo, McCallum, Anna W., Rodríguez-Flores, Paula C., and MacPherson, Enrique (2022) Deconstructing the crustacean squat lobster genus Munida to reconstruct the evolutionary history and systematics of the family Munididae (Decapoda, Anomura, Galatheoidea). Invertebrate Systematics, 36 (10). pp. 926-970.

Madan, Damian, Rivera, Rafael, Ortega, Corrie, Touchon, Justin C., Kimball, Corinna, Van Gemert, Geert-Jan, Graumans, Wouter, Matsuura, Stephanie, Parghi, Sean S., Bell, David, Bousema, Teun, Drakeley, Chris, Collins, Katharine A., and Burkot, Thomas R. (2022) Estimating female malaria mosquito age by quantifying Y-linked genes in stored male spermatozoa. Scientific Reports, 12. 10570.

Mayer, Treana, Moskaluk, Alexandra E., Kolby, Jonathan E., Russell, Michael, Schaffer, Paula, and Fagre, Anna C. (2022) First recorded outbreak of Veronaea botryosa in North American amphibians: Clinicopathologic features of a rare cause of phaeohyphomycosis in captive White’s tree frogs (Litoria caerulea). Medical Mycology Case Reports, 38. pp. 13-17.

Muruga, Pooventhran, Bellwood, David R., and Mihalitsis, Michalis (2022) Forensic odontology: Assessing bite wounds to determine the role of teeth in piscivorous fishes. Integrative Organismal Biology, 4 (1). obac011.

Muruganandah, Visai, and Kupz, Andreas (2022) Immune responses to bacterial lung infections and their implications for vaccination. International Immunology, 34 (5). pp. 231-248.

Manríquez, Patricio H., Jara, María Elisa, González, Claudio P., Jeno, Katherine, Domenici, Paolo, Watson, Sue-Ann, Duarte, Cristian, and Brokordt, Katherina (2022) Multiple-stressor effects of ocean acidification, warming and predation risk cues on the early ontogeny of a rocky-shore keystone gastropod. Environmental Pollution, 302. 118918.

Mitchell, John D., Pell, Susan K., Bachelier, Julien B., Warschefsky, Emily J., Joyce, Elizabeth M., Canadell, Laura Calvillo, da Silva-Luz, Cintia Luiza, and Coiffard, Clement (2022) Neotropical Anacardiaceae (cashew family). Brazilian Journal of Botany, 45. pp. 139-180.

Morais, Juliano, and Santos, Bráulio A. (2022) Prevalence and extent of coral diseases in shallow and mesophotic reefs of the Southwestern Atlantic. Coral Reefs, 41. pp. 1317-1322.

Munn, Richard, Whittem, Ted, and Woodward, Andrew P. (2022) The Surface Area to Volume Ratio Changes the Pharmacokinetic and Pharmacodynamic Parameters in the Subcutaneous Tissue Cage Model: As Illustrated by Carprofen in Sheep. Frontiers in Veterinary Science, 9. 905797.

Maxwell, Stephen J. (2022) An iconography of Ministrombus Dekkers, 2010 (Gastropoda: Neostromboidae: Strombidae) with the description of new species. The Festivus, 54 (2). pp. 116-140.

McKnight, Donald T., Huerlimann, Roger, Bower, Deborah S., Schwarzkopf, Lin, Alford, Ross A., and Zenger, Kyall R. (2022) The interplay of fungal and bacterial microbiomes on rainforest frogs following a disease outbreak. Ecosphere, 13 (7). e4037.

Maxwell, Stephen J., and Ocean, Khang (2022) A putative inter-generic hybrid between Harpago Mörch, 1852 and Solidistrombus Dekkers, 2008 (Gastropoda: Neostromboidae; Strombidae) from Đảo Phú Quý Vietnam. The Festivus, 54 (3). pp. 196-203.

Maxwell, Stephen J. (2022) A revision of Doxanderina Dekkers and Maxwell, 2020 (Gastropoda: Neostromboidae: Strombidae): The extant Doxander Wenz, 1940 and a new species from Queensland. The Festivus, 54 (2). pp. 141-168.

Maxwell, Stephen John (2022) A revision of Strombus urceus Linné, 1758. PhD thesis, James Cook University.

Maxwell, Stephen J., and Rymer, Tasmin L. (2022) A study of a population of Canarium (Canarium) urceus (Mollusca, Strombidae) from Nha Trang, Vietnam. Strombus, 28 (1-2). pp. 1-5.

Maxwell, Stephen, and Rymer, Tasmin (2021) Are the ICZN and PhyloCode that incompatible? A summary of the shifts in Stromboidean taxonomy and the definition of two new subfamilies in Stromboidae (Mollusca, Neostromboidae). The Festivus, 53 (1). pp. 44-51.

Maxwell, Stephen J., Rymer, Tasmin L., Rowell, Misha K., Hernandez Duran, Linda C., Berschauer, David, Underdown, Michael, Petuch, Edward J., and Dekkers, Aart (2021) Defining and bringing relevance of meaning to species group-level taxa. Proceedings of the Biological Society of Washington, 134. pp. 27-28.

Marc, Adrien François (2021) Development of advanced reproductive techniques to characterize fertility and accelerate selective breeding in barramundi (Lates calcarifer). PhD thesis, James Cook University.

Mitchell, Michela L., Hossain, Mohammed Akhter, Lin, Feng, Pinheiro‐Junior, Ernesto L., Peigneur, Steve, Wai, Dorothy C.C., Delaine, Carlie, Blyth, Andrew J., Forbes, Briony E., Tytgat, Jan, Wade, John D., and Norton, Raymond S. (2021) Identification, synthesis, conformation and activity of an insulin‐like peptide from a sea anemone. Biomolecules, 11 (12). 1785.

Mumbanza, Francis M., Bauters, Marijn, Meunier, Félicien, Boeckx, Pascal, Cernusak, Lucas, De Deurwaerder, Hannes P.T, Demol, Miro, Meeussen, Camille, Sercu, Bram, Verryckt, Lore T., Pauwels, Jana, Cizungu, Landry N., Báez, Selene, Lubini, Constantin A., and Verbeeck, Hans (2021) Lianas and trees exhibit divergent intrinsic water-use efficiency along elevational gradients in South American and African tropical forests. Global Ecology and Biogeography, 30 (11). pp. 2259-2272.

Mengoli, Manuel, Oliva, Jessica, Mendonca, Tiago, Chabaud, Camille, Arroub, Sana, Lafont-Lecuelle, Celine, Cozzi, Alessandro, Pageat, Patrick, and Bienboire-Frosini, Cecile (2021) Neurohormonal profiles of assistance dogs compared to pet dogs: what is the impact of different lifestyles? Animals, 11 (9). 2594.

Moynier, Frédéric, Hu, Yan, Dai, Wei, Kubik, Edith, Mahan, Brandon, and Moureau, Julien (2021) Potassium isotopic composition of seven widely available biological standards using collision cell (CC)-MC-ICP-MS. Journal of Analytical Atomic Spectrometry, 36 (11). pp. 2444-2448.

Maxwell, Stephen (2021) Recognising and defining new crown clades in Stromboidea Rafinesque, 1815 (Mollusca: Gastropoda) / Выявление и определение новых краун-групп в Stromboidea Rafinesque, 1815 (Mollusca: Gastropoda). Bulletin of the Russian Far East Malacological Society, 25 (1/2). pp. 9-16.

Maxwell, Stephen (2021) Registration of Neostromboidae Clades in the RegNum of the PhyloCode, and Errata. The Festivus, 53 (3). pp. 192-209.

Morais Araujo, Renato A., Siqueira Correa, Alexandre C., Smallhorn-West, Patrick F., and Bellwood, David R. (2021) Spatial subsidies drive sweet spots of tropical marine biomass production. PLoS Biology, 19 (11). e3001435.

Maxwell, Stephen, and Dekkers, Aart (2021) Studies in Canarium urceus (Linné, 1758) Part 4: Canarium (Canarium) orrae (Abbott, 1960) (Gastropoda: Neostromboidae: Strombidae) and a new species from the Northern Territory, Australia. The Festivus, 53 (4). pp. 270-281.

Maxwell, Stephen, and Dekkers, Aart (2021) Studies in Canarium urceus (Linné, 1758) Part 5: a New Species from the Northern Pacific Ocean (Gastropoda: Neostromboidae: Strombidae). The Festivus, 53 (4). pp. 282-287.

Manríquez, Patricio H., Jara, María Elisa, González, Claudio P., Seguel, Mylene E., Domenici, Paolo, Watson, Sue-Ann, Anguita, Cristóbal, Duarte, Cristian, and Brokordt, Katherina (2021) The combined effects of climate change stressors and predatory cues on a mussel species. Science of the Total Environment, 776. 145916.

Manríquez, Patricio H., Gonzalez, Claudio P., Seguel, Mylene, Garcia-Huidobro, M. Roberto, Lohrmann, Karin B., Domenici, Paolo, Watson, Sue-Ann, Duarte, Cristián, and Brokordt, Katherina (2021) The combined effects of ocean acidification and warming on a habitat-forming shell-crushing predatory crab. Science of the Total Environment, 758. 143587.

Maxwell, Stephen J., Hernandez Duran, Linda C., Rowell, Misha K., and Rymer, Tasmin L. (2021) An iconography of extant Gibberulus Jousseaume, 1888 (Mollusca, Gastropoda, Strombidae), and the introduction of a new species from the southwestern Pacific. Proceedings of the Biological Society of Washington, 134 (1). pp. 89-115.

Melville, Jane, Chapple, David F., Keogh, J. Scott, Sumner, Joanna, Amey, Andrew, Bowles, Phil, Brennan, Ian G., Couper, Patrick, Donnellan, Stephen C., Doughty, Paul, Edwards, Danielle L., Ellis, Ryan J., Esquerré, Damien, Fenker, Jéssica, Gardner, Michael G., Georges, Arthur, Haines, Margaret L., Hoskin, Conrad J., Hutchinson, Mark, Moritz, Craig, Nankivell, James, Oliver, Paul, Pavón-Vázquez, Carlos J., Pepper, Mitzy, Rabosky, Daniel L., Sanders, Kate, Shea, Glenn, Singhal, Sonal, Wilmer, Jessica Worthington, and Tingley, Reid (2021) A return-on-investment approach for prioritization of rigorous taxonomic research needed to inform responses to the biodiversity crisis. PLoS Biology, 19 (6). 3001210.

Maxwell, Stephen J., Rymer, Tasmin L., and Congdon, Bradley C. (2021) A theoretical composite model for population sex-specific shell size dynamics in Strombidae (Gastropoda, Neostromboidae). Journal of Natural History, 55 (41-42). pp. 2661-2672.

Meagher, David, Cairns, Andi, and Tagney, Ray (2020) Camptochaete monolina sp. nov. and Camptochaete subporotrichoides (Bryophyta: Lembophyllaceae) from the Australian Wet Tropics. Telopea, 23. pp. 213-220.

Mendonça, Raoani Cruz, Chen, Jun Yu, Zeng, Chaoshu, and Tsuzuki, Mônica Yumi (2020) Embryonic and early larval development of two marine angelfish, Centropyge bicolor and Centropyge bispinosa. Zygote, 28 (3). pp. 196-202.

Morrissey, Scott J., Schlaefer, Jodie A., and Kingsford, Michael J. (2020) Experimental validation of the relationships between cubozoan statolith elemental chemistry and salinity and temperature. Journal of Experimental Marine Biology and Ecology, 527. 151375.

Monteuuis, Geoffray, Schmitz, Ulf, Petrova, Veronika, Kearney, Padraic S., and Rasko, John E.J. (2020) Holding on to junk bonds: intron retention in cancer and therapy. Cancer Research, 81 (4). pp. 779-789.

Mitchell, Michela L., Tonkin-Hill, Gerry Q., Morales, Rodrigo A.V., Purcell, Anthony W., Papenfuss, Anthony T., and Norton, Raymond S. (2020) Tentacle Transcriptomes of the Speckled Anemone (Actiniaria: Actiniidae: Oulactis sp.): Venom-Related Components and Their Domain Structure. Marine Biotechnology, 22 (2). pp. 207-219.

Mitchell, Michela L., Shafee, Thomas, Papenfuss, Anthony T., and Norton, Raymond S. (2019) Evolution of cnidarian trans-defensins: Sequence, structure and exploration of chemical space. Proteins: Structure, Function and Bioinformatics, 87 (7). pp. 551-560.

Monteuuis, Geoffray, Wong, Justin J.L., Bailey, Charles G., Schmitz, Ulf, and Rasko, John E.J. (2019) The changing paradigm of intron retention: regulation, ramifications and recipes. Nucleic Acids Research, 47 (22). pp. 11497-11513.

MacIntosh, H., Althaus, F., Williams, A., Tanner, J.E., Alderslade, P., Ahyong, S.T., Bax, N., Criscione, F., Crowther, A.L., Farrelly, C.A., Finn, J.K., Goudie, L., Gowlett-Holmes, K., Hosie, A.M., Kupriyanova, E., Mah, C., McCallum, A.W., Merrin, K.L., Miskelly, A., Mitchell, M.L., Molodtsova, T., Murray, A., O'Hara, T.D., O'Loughlin, P.M., Paxton, H., Reid, A.L., Sorokin, S.J., Staples, D., Walker-Smith, G., Whitfield, E., and Wilson, R.S. (2018) Invertebrate diversity in the deep Great Australian Bight (200–5000m). Marine Biodiversity Records, 11. 23.

MacLeod, K.J., and Brouwer, L. (2018) Social context-dependent provisioning rules in red-winged fairy-wrens do not vary with signals of increased chick need. Animal Behaviour, 143. pp. 105-111.

Mourocq, Emeline, Bize, Pierre, Bouwhuis, Sandra, Bradley, Russell, Charmantier, Anne, de la Cruz, Carlos, Drobniak, Szymon M., Espie, Richard H.M., Herényi, Márton, Hötker, Hermann, Krüger, Oliver, Marzluff, John, Møller, Anders P., Nakagawa, Shinichi, Phillips, Richard A., Radford, Andrew N., Roulin, Alexandre, Török, János, Valencia, Juliana, van de Pol, Martijn, Warkentin, Ian G., Winney, Isabel S., Wood, Andrew G., and Griesser, Michael (2016) Life span and reproductive cost explain interspecific variation in the optimal onset of reproduction. Evolution, 70 (2). pp. 296-313.

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Neil, Rachel C., Barton, Jonathan A., Dougan, Winona, Dworjanyn, Symon, Heyward, Andrew, Mos, Benjamin, Bourne, David G., and Humphrey, Craig (2024) Size matters: Microherbivores make a big impact in coral aquaculture. Aquaculture, 581. 740402.

Nath, Babu Kanti, Das, Tridip, Peters, Andrew, Gupta, Suman Das, Sarker, Subir, Forwood, Jade K., Raidal, Shane R., and Das, Shubhagata (2023) Australasian Pigeon Circoviruses Demonstrate Natural Spillover Infection. Viruses, 15 (10). 2025.

Ni, Xue-Feng, Barton, Diane P., and Li, Liang (2023) Austraplectana extranes sp. n. (Nematoda: Cosmocercoidea) from Australian amphibians Mixophyes carbinensis Mahony, Donnellan, Richards & McDonald (Anura: Myobatrachidae) and Rhinella marina (Linnaeus) (Anura: Bufonidae). Systematic Parasitology, 100. pp. 183-188.

Nambiar, Geetika, Owens, Leigh, and Elliman, Jennifer (2023) Cherax quadricarinatus Resistant to Chequa iflavirus: A Pilot Study. Microorganisms, 11 (3). 578.

Nargar, Katharina, and Chen, Jen Tsung (2023) Editorial: Orchid genomics and developmental biology, volume II. Frontiers in Plant Science, 14. 1136350.

Napier, Thomas, Ahn, Euijoon, Allen-Ankins, Slade, and Lee, Ickjai (2023) An Optimised Grid Search Based Framework for Robust Large-Scale Natural Soundscape Classification. In: Lecture Notes in Computer Science (14471) pp. 468-479. From: AI 2023: 36th Australasian Joint Conference on Artificial Intelligence, 28 November - 1 December 2023, Brisbane, QLD, Australia.

Nagelkerken, Ivan, Allan, Bridie J.M., Booth, David J., Donelson, Jennifer M., Edgar, Graham J., Ravasi, Timothy, Rummer, Jodie L., Vergés, Adriana, and Mellin, Camille (2023) The effects of climate change on the ecology of fishes. PLOS Climate, 2 (8). e0000258.

Nordberg, Eric J., and Schwarzkopf, Lin (2022) Afraid of the Dark? The Influence of Natural and Artificial Light at Night on the Behavioral Activity of a Nocturnal Gecko. Frontiers in Ecology and Evolution, 10. 821335.

Narvaez, Pauline (2022) Cleaning symbiosis and the disease triangle. PhD thesis, James Cook University.

Noonan, Sam H.C., DiPerna, Stephanie, Hoogenboom, Mia O., and Fabricius, Katharina E. (2022) Effects of variable daily light integrals and elevated CO2 on the adult and juvenile performance of two Acropora corals. Marine Biology, 169. 10.

Nargar, Katharina, O'Hara, Kate, Mertin, Allison, Bent, Stephen J., Nauheimer, Lars, Simpson, Lalita, Zimmer, Heidi, Molloy, Brian P.J., and Clements, Mark A. (2022) Evolutionary Relationships and Range Evolution of Greenhood Orchids (Subtribe Pterostylidinae): Insights From Plastid Phylogenomics. Frontiers in Plant Science, 13. 912089.

Noonan, Sam Hamilton Croft (2022) Responses of corals and coral reef ecosystems to ocean acidification under variable temperature and light. PhD thesis, James Cook University.

Nauheimer, Lars, Weigner, Nicholas, Joyce, Elizabeth, Crayn, Darren, Clarke, Charles, and Nargar, Katharina (2021) HybPhaser: a workflow for the detection and phasing of hybrids in target capture data sets. Applications in Plant Sciences, 9 (7). e11441.

Nath, Babu Kanti, Das, Shubhagata, Roby, Justin A., Sarker, Subir, Luque, Daniel, Raidal, Shane R., and Forwood, Jade K. (2021) Structural Perspectives of Beak and Feather Disease Virus and Porcine Circovirus Proteins. Viral Immunology, 34 (1). pp. 49-59.

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Reinhold, Linda M., Rymer, Tasmin L., Helgen, Kristofer M., and Wilson, David T. (2023) Photoluminescence in mammal fur: 111 years of research. Journal of Mammalogy, 104 (4). pp. 892-906.

Rugolo, Maximiliano, Barroetaveña, Carolina, Barrett, Matt D., Mata, Gerardo, Hood, Ian A., Rajchenberg, Mario, and Pildain, Maria B. (2023) Phylogenetic relationships and taxonomy of Grifola (Polyporales). Mycological Progress, 22. 7.

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Rowell, Misha K., and Rymer, Tasmin L. (2023) Problem solving of wild animals in the Wet Tropics of Queensland, Australia. Austral Ecology, 48 (2). pp. 313-322.

Rowell, Misha K., and Harrison, Natasha (2023) Problem-solving of the cylinder, tile and lever tasks by wild animals in Dryandra National Park, Western Australia. Austral Ecology, 48 (8). pp. 2030-2040.

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Rowell, Misha, and Rymer, Tasmin L. (2023) The consistency of exploration behaviours across life stages in a native Australian rodent, the fawn-footed mosaic-tailed rat Melomys cervinipes. Behavioural Processes, 207. 104857.

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Rummer, Jodie L., and Illing, Björn (2022) Chapter 7 - Coral reef fishes in a multi-stressor world. In: Strailey, Katherine K., and Suski, Cory D., (eds.) Fish Physiology. Elsevier, Cambridge, United States, pp. 325-391.

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Rymer, Tasmin Lee, Rimbach, Rebecca, and Pillay, Neville (2022) Editorial: Proximate and ultimate approaches to behavior in a changing world. Frontiers in Ecology and Evolution, 10. 1064923.

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Rye, Barbara L., and Barrett, Matt (2020) A new species that’s worth its salt: Verticordia elizabethiae (Myrtaceae: chamelaucieae), a salt-tolerant rarity from semi-arid Western Australia. Nuytsia, 31. pp. 259-263.

Rymer, Tasmin L. (2020) The role of olfactory genes in the expression of rodent paternal care behavior. Genes, 11 (3). 292.

Rymer, Tasmin Lee (2019) Parental investment. In: Vonk, J, and Shackelford, T.K., (eds.) Encyclopedia of Animal Cognition and Behavior. Springer Nature, Cham, Switzerland, pp. 1-10.

Rajasekhar, Magha, Schmitz, Ulf, Flamant, Stephane, Wong, Justin J.-L., Bailey, Charles G., Ritchie, Willian, Holst, Jeff, and Rasko, John E.J. (2018) Identifying microRNA determinants of human myelopoiesis. Scientific Reports, 8. 7264.

Rummer, Jodie L. (2017) What if you can't sense your enemy... and your enemy is an invasive predator? Conservation Physiology, 5 (1).

Revell, B., Couper, P., Wilson, S., Amey, A., and Hoskin, C.J. (2017) A significant range extension for the Border Ranges Leaf-tailed Gecko, Saltuarius swaini (Wells & Wellington, 1985) (Reptilia: Carphodactylidae). Memoirs of the Queensland Museum - Nature, 60. pp. 185-191.

Raidal, S.R., Sarker, S., and Peters, A. (2015) Review of psittacine beak and feather disease and its effect on Australian endangered species. Australian Veterinary Journal, 93 (12). pp. 466-470.

Raasch, Peter, Schmitz, Ulf, Patenge, Nadja, Vera, Julio, Kreikemeyer, Bernd, and Wolkenhauer, Olaf (2010) Non-coding RNA detection methods combined to improve usability, reproducibility and precision. BMC Bioinformatics, 11. 491.

Roman, Gheorghe, Riley, John, Vlahakis, Jason, Kinobe, Robert, Brien, James, Nakatsu, Kanji, and Szarek, Walter (2007) Heme oxygenase inhibition by 2-oxy-substituted 1-(1H-imidazol-1-yl)-4-phenylbutanes: Effect of halogen substitution in the phenyl ring. Bioorganic & Medicinal Chemistry, 15. pp. 3225-3234.

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Song, Lisheng, Xu, Yanhao, Liddell, Michael, Cui, Yaokui, Liu, Shaomin, and Xu, Peipei (2023) Application of a two source energy balance model coupled with satellite based soil moisture and thermal infrared data. ISPRS Journal of Photogrammetry and Remote Sensing, 204. pp. 15-26.

Suresh, Sneha, Mirasole, Alice, Ravasi, Timothy, Vizzini, Salvatrice, and Schunter, Celia (2023) Brain transcriptome of gobies inhabiting natural CO2 seeps reveal acclimation strategies to long-term acidification. Evolutionary Applications, 16 (7). pp. 1345-1358.

Sarker, Subir (2023) Complete Mitochondrial Genome Sequence of an Australian Little Crow (Corvus bennetti). Microbiology Resource Announcements, 12 (5). e01367-22.

Spiecker, Lisa, Curdt, Franziska, Bally, Andreas, Janzen, Nadja, Kraemer, Philipp, Leberecht, Bo, Kingsford, Michael J., Mouritsen, Henrik, Winklhofer, Michael, and Gerlach, Gabriele (2023) Coral reef fish larvae show no evidence for map-based navigation after physical displacement. iScience, 26 (6). 106950.

Sarker, Subir, and Phalen, David (2023) Detection of a Novel Alphaherpesvirus and Avihepadnavirus in a Plantar Papilloma from a Rainbow Lorikeet (Trichoglosis moluccanus). Viruses, 15 (10). 2106.

Simpson, Tiffany J.S., Wellington, Claire M., Lukehurst, Sherralee S., Huerlimann, Roger, Veilleux, Heather, Snow, Michael, Dias, Joana, and McDonald, Justin I. (2023) Development of a real-time PCR (qPCR) method for the identification of the invasive paddle crab Charybdis japonica (Crustacea, Portunidae). PeerJ, 11. e15522.

Silveira, Mayara M., Donelson, Jennifer M., McCormick, Mark I., Araujo-Silva, Heloysa, and Luchiari, Ana C. (2023) Impact of ocean warming on a coral reef fish learning and memory. PeerJ, 11. e15729.

Sutherland, M., and Sarker, S. (2023) Liver virome of a Little Corella (Cacatua sanguinea) reveals coinfection with a novel parvovirus and two beak and feather disease viruses. Australian Veterinary Journal, 101 (9). pp. 366-372.

Sari, Rismita, Crayn, Darren, Dillon, Natalie, Gadek, Paul, and Abell, Sandra (2023) Molecular and morphological analysis supports the transfer of the monotypic Indonesian genus Septogarcinia Kosterm. to Garcinia (Clusiaceae). Reinwardtia, 22 (2). pp. 111-129.

Sarker, Subir, and Raidal, Shane R. (2023) A Novel Pathogenic Avipoxvirus Infecting Vulnerable Cook’s Petrel (Pterodroma cookii) in Australia Demonstrates a High Genomic and Evolutionary Proximity with South African Avipoxviruses. Microbiology Spectrum, 11 (2).

Schmitz, Ulf (2023) Overview of Computational and Experimental Methods to Identify Tissue-Specific MicroRNA Targets. In: Dalmay, Tamas, (ed.) MicroRNA Detection and Target Identification: Methods and Protocols. Methods in Molecular Biology, 2630 . Humana Press, New York, NY, USA, pp. 155-177.

Saper, Julia, Høj, Lone, Humphrey, Craig, and Bourne, David G. (2023) Quantifying capture and ingestion of live feeds across three coral species. Coral Reefs, 42. pp. 931-943.

Sorenson, Alanna E., and Schaeffer, Patrick M. (2023) Real-Time Temperature Sensing Using a Ratiometric Dual Fluorescent Protein Biosensor. Biosensors, 13 (3). 338.

Soo, Oi Yoon Michelle, Gastineau, Romain, Verdon, George, Winsor, Leigh, and Justine, Jean Lou (2023) Rediscovery of Bipalium admarginatum de Beauchamp, 1933 (Platyhelminthes, Tricladida, Geoplanidae) in Malaysia, with molecular characterisation including the mitogenome. Zootaxa, 5277 (3). pp. 585-599.

Schunter, Celia, Donelson, Jennifer M., Munday, Philip L., and Ravasi, Timothy (2023) Resilience and Adaptation to Local and Global Environmental Change. In: Laudet, Vincent, and Ravasi, Timothy, (eds.) Evolution, Development and Ecology of Anemonefishes: Model Organisms for Marine Science. CRC Press, Boca Raton, Florida, USA, pp. 253-273.

Singh Ramesh, Arun (2023) Temperature and soil nutrient availability shape tree responses to elevation in the Australian Wet Tropics: growth, physiology, and chemistry. PhD thesis, James Cook University.

Singh Ramesh, Arun, Cheesman, Alexander W., Flores-Moreno, Habacuc, Preece, Noel D., Crayn, Darren M., and Cernusak, Lucas A. (2023) Temperature, nutrient availability, and species traits interact to shape elevation responses of Australian tropical trees. Frontiers in Forests and Global Change, 6. 1089167.

Streit, Robert P., and Bellwood, David R. (2023) To harness traits for ecology, let's abandon 'functionality'. Trends in Ecology and Evolution, 38 (5). pp. 402-411.

Sreedharan, Gayathri, Panwar, Yashwant Singh, Murthy, Saketh, Klop-Toker, Kaya, Ibanez, Roberto, Illueca, Estefany E., Webb, Rebecca, Govindappa, Venu, Subba, Barkha, Segu, Harika, Komanduri, Krishna Pavan Kumar, and Vasudevan, Karthikeyan (2023) A Universal and Efficient Detection of Chytridiomycosis Infections in Amphibians Using Novel Quantitative PCR Markers. Transboundary and Emerging Diseases, 2023. 9980566.

Siqueira, Alexandre C., Yan, Helen F., Morais, Renato A., and Bellwood, David R. (2023) The evolution of fast-growing coral reef fishes. Nature, 618. pp. 322-327.

Scheele, Ben C., Heard, Geoffrey W., Cardillo, Marcel, Duncan, Richard P., Gillespie, Graeme R., Hoskin, Conrad J., Mahony, Michael, Newell, David, Rowley, Jodi R.L., and Sopniewski, Jarrod (2023) An invasive pathogen drives directional niche contractions in amphibians. Nature Ecology & Evolution, 7. pp. 1682-1692.

Saper, Julia (2022) Augmented coral health: linking heterotrophic diets to the acquisition of probiotics in symbiotic scleractinia. Masters (Research) thesis, James Cook University.

Sidorczuk, Katarzyna, Gagat, Przemyslaw, Pietluch, Filip, Kala, Jakub, Rafacz, Dominik, Bakala, Laura, Slowik, Jadwiga, Kolenda, Rafal, Rodiger, Stefan, Fingerhut, Legana C.H.W., Cooke, Ira R., Mackiewicz, Pawel, and Burdukiewicz, Michal (2022) Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data. Briefings in Bioinformatics, 23 (5). bbac343.

Sarker, Subir, Athukorala, Ajani, and Phalen, David N. (2022) Characterization of a Near-Complete Genome Sequence of a Chaphamaparvovirus from an Australian Boobook Owl (Ninox boobook). Microbiology Resource Announcements, 11 (5). e00249-22.

Sarker, Subir (2022) Characterization of a Novel Complete-Genome Sequence of a Galliform Chaphamaparvovirus from a Free-Range Laying Chicken Clinically Diagnosed with Spotty Liver Disease. Microbiology Resource Announcements, 11 (11). e01017-22.

Saggiomo, Silvia Luiza de Andrade (2022) Characterization of marine venoms. PhD thesis, James Cook University.

Schmidt, Casey Ann (2022) Characterization of peptides derived from marine organisms. PhD thesis, James Cook University.

Swan, Thomas Stanley Tonks (2022) Ecology and population genomics of Aedes albopictus in the Torres Strait, Australia. PhD thesis, James Cook University.

Shama, Lisa N.S., Donelson, Jennifer M., Eirin-Lopez, Jose M., and Ravasi, Timothy (2022) Editorial: Adaptation and Phenotypic Plasticity to Climate Change. Frontiers in Marine Science, 9. 893117.

Shu, Jacelyn J., Heuer, Rachael M., Hannan, Kelly D., Stieglitz, John D., Benetti, Daniel D., Rummer, Jodie L., Grosell, Martin, and Brauner, Colin J. (2022) Enhanced oxygen unloading in two marine percomorph teleosts. Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 264. 111101.

Sarker, Subir, Bowden, Timothy R., and Boyle, David B. (2022) Evidence of a Possible Viral Host Switch Event in an Avipoxvirus Isolated from an Endangered Northern Royal Albatross (Diomedea sanfordi). Viruses, 14 (2). 302.

Siqueira Correa, Alexandre, Kiessling, Wolfgang, and Bellwood, David (2022) Fast-growing species shape the evolution of reef corals. Nature Communications, 13. 2426.

Sato, Yui, Wippler, Juliane, Wentrup, Cecilia, Ansorge, Rebecca, Sadowski, Miriam, Gruber-Vodicka, Harald, Dubilier, Nicole, and Kleiner, Manuel (2022) Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium. Microbiome, 10. 178.

Salamena, Gerry Giliant (2022) Flushing processes in the shallow-silled tropical fjord of Ambon Bay, eastern Indonesia. PhD thesis, James Cook University.

Sarker, Subir, Athukorala, Ajani, and Phalen, David N. (2022) Genome Sequence of a Beak and Feather Disease Virus from an Unusual Novel Host, Australian Boobook Owl (Ninox boobook). Microbiology Resource Announcements, 11 (4). e00172-22.

Settle, Damian, and Cernusak, Lucas (2022) Growing Strangler Figs in Coconuts. Ideation of Carbon-negative, Living Infrastructure. In: Community Empowerment, Sustainable Cities, and Transformative Economies. pp. 167-189. From: BEMAS: 1st International Conference in Business, Economics, Management, and Sustainability, 2-3 July 2021, Cairns, QLD, Australia.

Sarker, Subir, and Sutherland, Michelle (2022) Molecular characterisation of a novel pathogenic avipoxvirus from an Australian little crow (Corvus bennetti) directly from the clinical sample. Scientific Reports, 12 (1). 15053.

Schmidt, Casey A., Cooke, Ira, Wilson, David T., Miller, David J., Peigneur, Steve, Tytgat, Jan, Field, Matthew, Takjoo, Rozita, Smout, Michael J., Loukas, Alex, and Daly, Norelle L. (2022) Newly Discovered Peptides from the Coral Heliofungia actiniformis Show Structural and Functional Diversity. Journal of Natural Products, 85 (7). pp. 1789-1798.

Spinks, Rachel K., Donelson, Jennifer M., Bonzi, Lucrezia C., Ravasi, Timothy, and Munday, Philip L. (2022) Parents exposed to warming produce offspring lower in weight and condition. Ecology and Evolution, 12 (7). e9044.

Saadi, Ahmed J., Bibermair, Julian, Kocot, Kevin M., Roberts, Nickellaus G., Hirose, Masato, Calcino, Andrew, Baranyi, Christian, Chaichana, Ratcha, Wood, Timothy S., and Schwaha, Thomas (2022) Phylogenomics reveals deep relationships and diversification within phylactolaemate bryozoans. Proceedings of the Royal Society of London Series B, Biological Sciences, 289 (1986). 20221504.

Sarker, Subir (2022) Special Issue: Emerging Wildlife Viral Diseases. Viruses, 14 (4). 807.

Schmitz, Ulf, Wolkenhauer, Olaf, and Vera-González, Julio (2022) Systems Biology of MicroRNAs in Cancer. Advances in Experimental Medicine and Biology, 1385 . Springer Cham.

Salamena, Gerry Giliant, Whinney, James C., and Heron, Scott F. (2022) Vertical circulation due to deep-water renewal and phytoplankton blooms in the tropical fjord of Ambon Bay, eastern Indonesia. Journal of Marine Systems, 234. 103776.

Schulreich, Stephan, M., Salamanca-Diaz, David A., Zieger, Elisabeth, Calcino, Andrew, and Wanninger, Andreas (2022) A mosaic of conserved and novel modes of gene expression and morphogenesis in mesoderm and muscle formation of a larval bivalve. Organisms Diversity and Evolution, 22. pp. 893-913.

Schlaefer, Jodie A., Wolanski, Eric, Lambrechts, Jonathan, and Kingsford, Michael J. (2021) Behavioural and oceanographic isolation of an island-based jellyfish (Copula sivickisi, Class Cubozoa) population. Scientific Reports, 11. 10280.

Schmitz, Ulf, Monteuuis, Geoffray, Petrova, Veronika, Shah, Jaynish S., and Rasko, John E.J. (2021) Computational methods for intron retention identification and quantification. In: Wolkenhauer, Olaf, Cai, Yudong, and Rozman, Damjana, (eds.) Systems Medicine: integrative, qualitative and computational approaches. Academic Press, London Wall, United Kingdom, pp. 63-74.

Schunter, Celia, Jarrold, Michael D., Munday, Philip L., and Ravasi, Timothy (2021) Diel pCO2 fluctuations alter the molecular response of coral reef fishes to ocean acidification conditions. Molecular Ecology, 30 (20). pp. 5105-5118.

Sarker, Subir, Athukorala, Ajani, Nyandowe, Tadiwa, Bowden, Timothy R., and Boyle, David B. (2021) Genomic Characterisation of a Novel Avipoxvirus Isolated from an Endangered Northern Royal Albatross (Diomedea sanfordi). Pathogens, 10 (5). 575.

Sarker, Subir, Athukorala, Ajani, Bowden, Timothy R., and Boyle, David B. (2021) Genomic Characterisation of a Novel Avipoxvirus Isolated from an Endangered Yellow-Eyed Penguin (Megadyptes antipodes). Viruses, 13 (2). 194.

Sarker, Subir, Bowden, Timothy R., and Boyle, David B. (2021) Genomic characterisation of a novel avipoxvirus, magpiepox virus 2, from an Australian magpie (Gymnorhina tibicen terraereginae). Virology, 562. pp. 121-127.

Sachslehner, Attila, Zieger, Elisabeth, Calcino, Andrew, and Wanninger, Andreas (2021) HES and Mox genes are expressed during early mesoderm formation in a mollusk with putative ancestral features. Scientific Reports, 11. 18030.

Streit, Robert P., Hemingson, Christopher R., Cumming, Graeme S., and Bellwood, David R. (2021) How flexible are habitat specialists? Short-term space use in obligate coral-dwelling damselfishes. Reviews in Fish Biology and Fisheries, 31. pp. 381-398.

Sweet, Michael, Villela, Helena, Keller-Costa, Tina, Costa, Rodrigo, Romano, Stefano, Bourne, David G., Cárdenas, Anny, Huggett, Megan J., Kerwin, Allison H., Kuek, Felicity, Medina, Monica, Meyer, Julie L., Müller, Moritz, Pollock, F. Joseph, Rappé, Michael S., Sere, Mathieu, Sharp, Koty H., Voolstra, Christian R., Zaccardi, Nathan, Ziegler, Maren, and Peixoto, Raquel (2021) Insights into the cultured bacterial fraction of corals. mSystems, 6 (3). e01249-20.

Sarker, Subir (2021) Metagenomic detection and characterisation of multiple viruses in apparently healthy Australian Neophema birds. Scientific Reports, 11 (1). 20915.

Sarker, Subir (2021) Molecular and Phylogenetic Characterisation of a Highly Divergent Novel Parvovirus (Psittaciform Chaphamaparvovirus 2) in Australian Neophema Parrots. Pathogens, 10 (12). 1559.

Sarker, Subir, Athukorala, Ajani, and Raidal, Shane R. (2021) Molecular characterisation of a novel pathogenic avipoxvirus from an Australian passerine bird, mudlark (Grallina cyanoleuca). Virology, 554. pp. 66-74.

Su, Chinh Tran-To, Lua, Wai-Heng, Poh, Jun-Jie, Ling, Wei-Li, Yeo, Joshua-Yi, and Gan, Samuel Ken-En (2021) Molecular insights of nickel binding to therapeutic antibodies as a possible new antibody superantigen. Frontiers in Immunology, 12. 676048.

Salamanca-Díaz, David A., Calcino, Andrew D., de Oliveira, André L., and Wanninger, Andreas (2021) Non-collinear Hox gene expression in bivalves and the evolution of morphological novelties in mollusks. Scientific Reports, 11. 3575.

Spinks, Rachel K. (2021) Phenotypic plasticity to warming in coral reef fishes: the importance of sex and exposure timing within and between generations. PhD thesis, James Cook University.

Santaquiteria, Aintzane, Siqueira, Alexandre C., Duarte-Ribeiro, Emanuell, Carnevale, Giorgio, White, William T., Pogonoski, John J., Baldwin, Carole C., Ortí, Guillermo, Arcila, Dahiana, and Ricardo, Betancur R. (2021) Phylogenomics and historical biogeography of seahorses, dragonets, goatfishes, and allies (Teleostei: syngnatharia): assessing factors driving uncertainty in biogeographic inferences. Systematic Biology, 70 (6). pp. 1145-1162.

Siqueira, Alexandre C., Morais, Renato A., Bellwood, David R., and Cowman, Peter F. (2021) Planktivores as trophic drivers of global coral reef fish diversity patterns. Proceedings of the National Academy of Sciences of the United States of America, 118 (9). e2019404118.

Sarker, Subir, Athukorala, Ajani, Talukder, Saranika, Haque, Md Hakimul, Helbig, Karla, Lavers, Jennifer L., and Raidal, Shane R. (2021) Resolution of the phylogenetic relationship of the vulnerable flesh-footed shearwater (Ardenna carneipes) seabird using a complete mitochondrial genome. Mitochondrial DNA Part B: Resources, 6 (4). pp. 1507-1511.

Spinks, Rachel K., Bonzi, Lucrezia C., Ravasi, Timothy, Munday, Philip L., and Donelson, Jennifer M. (2021) Sex- and time-specific parental effects of warming on reproduction and offspring quality in a coral reef fish. Evolutionary Applications, 14 (4). pp. 1145-1158.

Swan, T., Ritmejeryte, E., Sebayang, B., Jones, R., Devine, Gregor, Graham, M., Zich, F.A., Staunton, K., Russell, T.L., and Burkot, T.R. (2021) Sugar prevalence in Aedes albopictus differs by habitat, sex and time of day on Masig Island, Torres Strait, Australia. Parasites & Vectors, 14. 520.

Sun, Eun Jin, Wankell, Miriam, Palamuthusingam, Pranavan, McFarlane, Craig, and Hebbard, Lionel (2021) Targeting the PI3K/Akt/mTOR pathway in hepatocellular carcinoma. Biomedicines, 9 (11). 1639.

Seppelt, Rod D., Meagher, David, Cairns, Andi, and Franks, Andrew (2021) The moss family Calymperaceae (Bryophyta) in Australia part 1: introduction and key to genera. Telopea, 24. pp. 247-252.

Sathkumara, Harindra D., Eaton, Janet L., Field, Matt A., Govan, Brenda L., Ketheesan, Natkunam, and Kupz, Andreas (2021) A murine model of tuberculosis/type 2 diabetes comorbidity for investigating the microbiome, metabolome and associated immune parameters. Animal Models and Experimental Medicine, 4 (2). pp. 181-188.

Schmitz, Ulf, Shah, Jaynish S., Dhungel, Bijay P., Monteuuis, Geoffray, Luu, Phuc-Loi, Petrova, Veronika, Metierre, Cynthia, Nair, Shalima S., Bailey, Charles G., Saunders, Verity A., Turhan, Ali G., White, Deborah L., Branford, Susan, Clark, Susan J., Hughes, Timothy P., Wong, Justin J.-L., and Rasko, John E.J. (2020) Widespread aberrant alternative splicing despite molecular remission in chronic myeloid leukaemia patients. Cancers, 12 (12). 3738.

Schlaefer, Jodie Anne (2020) Determining the population structures of cubozoan jellyfishes with biophysical modelling. PhD thesis, James Cook University.

Shima, Amy L., Vaz, Paola K., Johnson, Linda, Devlin, Joanne M., and Skerratt, Lee F. (2020) Herpesvirus infection in Lumholtz’s tree-kangaroo (Dendrolagus lumholtzi). Journal of Wildlife Diseases, 56 (4). pp. 912-917.

Sato, Yui, Wippler, Juliane, Wentrup, Cecilia, Dubilier, Nicole, and Kleiner, Manuel (2020) High-Quality Draft Genome Sequences of Two Deltaproteobacterial Endosymbionts, Delta1a and Delta1b, from the Uncultured Sva0081 Clade, Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis. Microbiology Resource Announcements, 9 (16). e00276-20.

Sato, Yui, Wippler, Juliane, Wentrup, Cecilia, Woyke, Tanja, Dubilier, Nicole, and Kleiner, Manuel (2020) High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis. Microbiology Resource Announcements, 9 (31). e00704-20.

Schmidt, Casey A., Wilson, David T., Cooke, Ira, Potriquet, Jeremy, Tungatt, Katie, Muruganandah, Visai, Boote, Chloe, Kuek, Felicity, Miles, John J., Kupz, Andreas, Ryan, Stephanie, Loukas, Alex, Bansal, Paramjit S., Takjoo, Rozita, Miller, David J., Peigneur, Steve, Tytgat, Jan, and Daly, Norelle (2020) Identification and characterization of a peptide from the stony coral Heliofungia actiniformis. Journal of Natural Products, 83 (11). pp. 3454-3463.

Sarker, Subir, Batinovic, Steven, Talukder, Saranika, Das, Shubhagata, Park, Fiona, Petrovski, Steve, Forwood, Jade K., Helbig, Karla J., and Raidal, Shane R. (2020) Molecular characterisation of a novel pathogenic avipoxvirus from the Australian magpie (Gymnorhina tibicen). Virology, 540. pp. 1-16.

Shi, Wenyuan, Liu, Fang, Liu, An, Huang, Huiyang, Lin, Qi, Zeng, Chaoshu, and Ye, Haihui (2020) Roles of gonad-inhibiting hormone in the protandric simultaneous hermaphrodite peppermint shrimp. Biology of Reproduction, 103 (4). pp. 817-827.

Siqueira, Alexandre C., Morais, Renato A., Bellwood, David R., and Cowman, Peter F. (2020) Trophic innovations fuel reef fish diversification. Nature Communications, 11. 2669.

Siqueira Correa, Alexandre (2020) The evolution, macroecology and biogeography of coral reef fishes: a trophic perspective. PhD thesis, James Cook University.

Sarker, Subir, Talukder, Saranika, Sutherland, Michelle, Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2019) Characterization of the first mitochondrial genome of a little Corella (Cacatua sanguinea) and its phylogenetic implications. Mitochondrial DNA Part B: Resources, 4 (2). pp. 3792-3794.

Schmitz, Ulf, Gupta, Shailendra K., Vera, Julio, and Wolkenhauer, Olaf (2019) Computational approaches in microRNA biology. In: Narayan, Roger, (ed.) Encyclopedia of Biomedical Engineering. Elsevier, Amsterdam, The Netherlands, pp. 317-330.

Sarker, Subir, Isberg, Sally R., Moran, Jasmin L., De Araujo, Rachel, Elliott, Nikki, Melville, Lorna, Beddoe, Travis, and Helbig, Karla J. (2019) Crocodilepox Virus Evolutionary Genomics Supports Observed Poxvirus Infection Dynamics on Saltwater Crocodile (Crocodylus porosus). Viruses, 11 (12). 1116.

Su, Zhiduan, Burchfield, James G., Yang, Pengyi, Humphrey, Sean J., Yang, Guang, Francis, Deanne, Yasmin, Sabina, Shin, Sung-Young, Norris, Dougall M., Kearney, Alison L., Astore, Miro A., Scavuzzo, Jonathan, Fisher-Wellman, Kelsey H., Wang, Qiao-Ping, Parker, Benjamin L., Neely, G. Gregory, Vafaee, Fatemeh, Chiu, Joyce, Yeo, Reichelle, Hogg, Philip J., Fazakerley, Daniel J., Nguyen, Lan K., Kuyucak, Serdar, and James, David E. (2019) Global redox proteome and phosphoproteome analysis reveals redox switch in Akt. Nature Communications, 10. 5486.

Shafee, Thomas, Mitchell, Michela L., and Norton, Raymond S. (2019) Mapping the chemical and sequence space of the ShKT superfamily. Toxicon, 165. pp. 95-102.

Sutherland, Michelle, Sarker, Subir, and Raidal, Shane R. (2019) Molecular and microscopic characterisation of a novel pathogenic herpesvirus from Indian ringneck parrots (Psittacula krameri). Veterinary Microbiology, 239. 108428.

Sarker, Subir, Das, Shubhagata, Ghorashi, Seyed A., Forwood, Jade K., and Raidal, Shane R. (2019) Pigeon circoviruses from feral pigeons in Australia demonstrate extensive recombination and genetic admixture with other circoviruses. Avian Pathology, 48 (6). pp. 512-520.

Silcock, J.L., Field, Ashley, Walsh, N.G., and Fensham, R.J. (2019) To name those lost: assessing extinction likelihood in the Australian vascular flora. Oryx, 54. pp. 167-177.

Sarker, Subir, Sutherland, Michelle, Talukder, Saranika, Das, Shubhagata, Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2019) The first complete mitogenome of Indian ringneck (Psittacula krameri) demonstrates close phylogenetic relationship with Eclectus parrot. Mitochondrial DNA Part B: Resources, 4 (2). pp. 3579-3581.

Sarker, S., Das, S., Helbig, K., Peters, A., and Raidal, S.R. (2018) Genome sequence of an Australian strain of canid alphaherpesvirus 1. Australian Veterinary Journal, 96 (1-2). pp. 24-27.

Sarker, Subir, Isberg, Sally R., Milic, Natalie L., Lock, Peter, and Helbig, Karla J. (2018) Molecular characterization of the first saltwater crocodilepox virus genome sequences from the world's largest living member of the Crocodylia. Scientific Reports, 8 (1). 5623.

Sarker, Subir, Wang, Yinan, Warren-Smith, Brenden, and Helbig, Karla J. (2017) Dynamic changes in host gene expression following in vitro viral mimic stimulation in crocodile cells. Frontiers in Immunology, 8. 1634.

Sarker, Subir, Das, Shubhagata, Lavers, Jennifer L., Hutton, Ian, Helbig, Karla, Imbery, Jacob, Upton, Chris, and Raidal, Shane R. (2017) Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.). BMC Genomics, 18 (1). 298.

Schmitz, Ulf, Pinello, Natalia, Jia, Fangzhi, Alasmari, Sultan, Ritchie, William, Keightley, Maria-Cristina, Shini, Shaniko, Lieschke, Graham J., Wong, Justin J-L., and Rasko, John E.J. (2017) Intron retention enhances gene regulatory complexity in vertebrates. Genome Biology, 18. 216.

Sarker, Subir, Roberts, Hayley K., Tidd, Naomie, Ault, Shayne, Ladmore, Georgia, Peters, Andrew, Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2017) Molecular and microscopic characterization of a novel Eastern grey kangaroopox virus genome directly from a clinical sample. Scientific Reports, 7. 16472.

Sarker, Subir, Lloyd, Chris, Forwood, Jade, and Raidal, Shane R. (2016) Forensic genetic evidence of beak and feather disease virus infection in a Powerful Owl, Ninox strenua. Emu, 116 (1). pp. 71-74.

Sarker, Subir, Das, Shubhagata, Helbig, Karla, and Raidal, Shane R. (2016) Identification of beak and feather disease virus in an unusual novel host (Merops ornatus) using nested PCR. Genome Announcements, 4 (6). e0137616.

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