Pantropical modelling of canopy functional traits using Sentinel-2 remote sensing data

Aguirre-Gutiérrez, Jesús, Rifai, Sami, Shenkin, Alexander, Oliveras, Imma, Bentley, Lisa Patrick, Svátek, Martin, Girardin, Cécile A.J., Both, Sabine, Riutta, Terhi, Berenguer, Erika, Kissling, W. Daniel, Bauman, David, Raab, Nicolas, Moore, Sam, Farfan-Rios, William, Figueiredo, Axa Emanuelle Simões, Reis, Simone Matias, Ndong, Josué Edzang, Ondo, Fidèle Evouna, N'ssi Bengone, Natacha, Mihindou, Vianet, Moraes de Seixas, Marina Maria, Adu-Bredu, Stephen, Abernethy, Katharine, Asner, Gregory P., Barlow, Jos, Burslem, David F.R.P., Coomes, David A., Cernusak, Lucas A., Dargie, Greta C., Enquist, Brian J., Ewers, Robert M., Ferreira, Joice, Jeffery, Kathryn J., Joly, Carlos A., Lewis, Simon L., Marimon-Junior, Ben Hur, Martin, Roberta E., Morandi, Paulo E., Phillips, Oliver L., Quesada, Carlos A., Salinas, Norma, Schwantes Marimon, Beatriz, Silman, Miles, Teh, Yit Arn, White, Lee J.T., and Malhi, Yadvinder (2021) Pantropical modelling of canopy functional traits using Sentinel-2 remote sensing data. Remote Sensing of Environment, 252. 112122.

[img] PDF (Published Version) - Published Version
Restricted to Repository staff only

View at Publisher Website:


Tropical forest ecosystems are undergoing rapid transformation as a result of changing environmental conditions and direct human impacts. However, we cannot adequately understand, monitor or simulate tropical ecosystem responses to environmental changes without capturing the high diversity of plant functional characteristics in the species-rich tropics. Failure to do so can oversimplify our understanding of ecosystems responses to environmental disturbances. Innovative methods and data products are needed to track changes in functional trait composition in tropical forest ecosystems through time and space. This study aimed to track key functional traits by coupling Sentinel-2 derived variables with a unique data set of precisely located in-situ measurements of canopy functional traits collected from 2434 individual trees across the tropics using a standardised methodology. The functional traits and vegetation censuses were collected from 47 field plots in the countries of Australia, Brazil, Peru, Gabon, Ghana, and Malaysia, which span the four tropical continents. The spatial positions of individual trees above 10 cm diameter at breast height (DBH) were mapped and their canopy size and shape recorded. Using geo-located tree canopy size and shape data, community-level trait values were estimated at the same spatial resolution as Sentinel-2 imagery (i.e. 10 m pixels). We then used the Geographic Random Forest (GRF) to model and predict functional traits across our plots. We demonstrate that key plant functional traits can be accurately predicted across the tropicsusing the high spatial and spectral resolution of Sentinel-2 imagery in conjunction with climatic and soil information. Image textural parameters were found to be key components of remote sensing information for predicting functional traits across tropical forests and woody savannas. Leaf thickness (R2 = 0.52) obtained the highest prediction accuracy among the morphological and structural traits and leaf carbon content (R2 = 0.70) and maximum rates of photosynthesis (R2 = 0.67) obtained the highest prediction accuracy for leaf chemistry and photosynthesis related traits, respectively. Overall, the highest prediction accuracy was obtained for leaf chemistry and photosynthetic traits in comparison to morphological and structural traits. Our approach offers new opportunities for mapping, monitoring and understanding biodiversity and ecosystem change in the most species-rich ecosystems on Earth.

Item ID: 67034
Item Type: Article (Research - C1)
ISSN: 1879-0704
Keywords: Image texture, Pixel-level predictions, Plant traits, Random Forest, Sentinel-2, Tropical forests
Copyright Information: © 2020 Elsevier Inc. All rights reserved.
Funders: Natural Environment Research Council (NERC), Netherlands Organisation for Scientific Research (NWO), European Research Council (ERC), Royal Society-Leverhulme Africa Capacity Building Programme, US National Science Foundation (NSF), Gordon and Betty Moore Foundation Andes-Amazon Program., National Council for Scientific and Technological Development (CNPq), Foundation of Research Support of Mato Grosso (FAPEMAT), Project ReFlor, Marie Curie Fellowship (MCF), Gabon National Parks Agency, Fondation Wiener-Anspach, University of Amsterdam (UA), Ministry of Education, Youth and Sports of the Czech Republic (MEYS-CR), Jackson Foundation
Projects and Grants: NERC NE/T011084/1, NERC NE/S011811/1, NWO 019.162LW.010, ERC Advanced Grant GEM-TRAIT: 321131, NERC Grant NE/D014174/1, NERC NE/J022616/1, NERC Grant ECOFOR (NE/K016385/1), NERC Grant BALI (NE/K016369/1), ERC Advanced Grant T-FORCES (291585), NERC Grant NE/I014705/1, NERC GrantNE/K016253/1, NSF Long-Term Research in Environmental Biology program (LTREB; DEB 1754647), CNPq Long Term Ecological Research Program (PELD), Proc. 441244/2016-5,, Project ReFlow Proc. 589267/2016, MCF FP7-PEOPLE-2012-IEF-327990, UA Faculty Research Cluster ‘Global Ecology’, MEYS-CR INTER-TRANSFER LTT19018
Date Deposited: 05 Aug 2021 02:23
FoR Codes: 31 BIOLOGICAL SCIENCES > 3108 Plant biology > 310806 Plant physiology @ 50%
31 BIOLOGICAL SCIENCES > 3103 Ecology > 310308 Terrestrial ecology @ 50%
SEO Codes: 28 EXPANDING KNOWLEDGE > 2801 Expanding knowledge > 280102 Expanding knowledge in the biological sciences @ 100%
Downloads: Total: 1
More Statistics

Actions (Repository Staff Only)

Item Control Page Item Control Page