Items where Subject is "06 BIOLOGICAL SCIENCES > 0602 Ecology > 060205 Marine and Estuarine Ecology (incl Marine Ichthyology)"

Up a level
Export as [feed] Atom [feed] RSS 1.0 [feed] RSS 2.0
Group by: Creators | Item Type
Jump to: A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W | Y | Z | Á
Number of items at this level: 2049.

A

Allan, Bridie Jean Marie (2015) The effects of climate change on predator-prey interactions in coral reef fish. PhD thesis, James Cook University.

Albouy, Camille, Leprieur, Fabien, Le Loc'h, François, Mouquet, Nicolas, Meynard, Christine N., Douzery, Emmanuel J.P., and Mouillot, David (2015) Projected impacts of climate warming on the functional and phylogenetic components of coastal Mediterranean fish biodiversity. Ecography, 38 (7). pp. 681-689.

Abrantes, Kátya G., Barnett, Adam, Baker, Ronald, and Sheaves, Marcus (2015) Habitat-specific food webs and trophic interactions supporting coastal-dependent fishery species: an Australian case study. Reviews in Fish Biology and Fisheries, 25 (2). pp. 337-363.

Anderson, Kristen D., Heron, Scott F., and Pratchett, Morgan S. (2015) Species-specific declines in the linear extension of branching corals at a subtropical reef, Lord Howe Island. Coral Reefs, 34 (2). pp. 479-490.

Allan, Bridie J.M., Domenici, Paolo, Munday, Philip L., and McCormick, Mark I. (2015) Feeling the heat: the effect of acute temperature changes on predator–prey interactions in coral reef fish. Conservation Physiology, 3 (1). pp. 1-8.

Abrantes, Kátya G., Johnston, Ross, Connolly, Rod M., and Sheaves, Marcus (2015) Importance of mangrove carbon for aquatic food webs in wet–dry tropical estuaries. Estuaries and Coasts, 38 (1). pp. 383-399.

Atherton, Jennifer Ann, and McCormick, Mark Ian (2015) Active in the sac: damselfish embryos use innate recognition of odours to learn predation risk before hatching. Animal Behaviour, 103. pp. 1-6.

Andrews, Allen H., Choat, John H., Hamilton, Richard J., and DeMartini, Edward E. (2015) Refined bomb radiocarbon dating of two iconic fishes of the Great Barrier Reef. Marine and Freshwater Research, 66 (4). pp. 305-316.

Ainsworth, Tracy D., Krause, Lutz, Bridge, Thomas, Torda, Gergely, Raina, Jean-Baptiste, Zakrzewski, Martha, Gates, Ruth D., Padilla-Gamino, Jacqueline L., Spalding, Heather L., Smith, Celia, Woolsey, Erika S., Bourne, David G., Bongaerts, Pim, Hoegh-Guldberg, Ove, and Leggat, Bill (2015) The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts. ISME Journal: multidisciplinary journal of microbial ecology, 9. pp. 2261-2274.

Adkins, Merritt Elizabeth (2014) Large bodied fish communities and drivers of use in the shallow waters of a coastal habitat mosaic. Masters (Research) thesis, James Cook University.

Augé, A.A., Chilvers, B.L., Moore, A.B., and Davis, L.S. (2014) Importance of studying foraging site fidelity for spatial conservation measures in a mobile predator. Animal Conservation, 17 (1). pp. 61-71.

Allan, Bridie J.M., Miller, Gabrielle M., McCormick, Mark I., Domenici, Paolo, and Munday, Philip L. (2014) Parental effects improve escape performance of juvenile reef fish in a high-CO(2) world. Proceedings of the Royal Society of London Series B, Biological Sciences, 281 (1777). pp. 1-7.

Arakaki, Seiji, Hutchinson, Neil, and Tokeshi, Mutsunori (2014) Foraging ecology of a large opportunistic predator (adult Lateolabrax latus) on a temperate-subtropical rocky shore. Coastal Ecosystems, 1. pp. 14-27.

Abrantes, Kátya G., Barnett, Adam, and Bouillon, Steven (2014) Stable isotope-based community metrics as a tool to identify patterns in food web structure in east African estuaries. Functional Ecology, 28 (1). pp. 270-282.

Arrigoni, Roberto, Richards, Zoe T., Chen, Chaolun Allen, Baird, Andrew H., and Benzoni, Francesca (2014) Taxonomy and phylogenetic relationships of the coral genera Australomussa and Parascolymia (Scleractinia, Lobophylliidae). Contributions to Zoology, 83 (3). pp. 195-215.

Anderson, Kristen D., and Pratchett, Morgan S. (2014) Variation in size-frequency distributions of branching corals between a tropical versus sub-tropical reef. Marine Ecology Progress Series, 502. pp. 117-128.

Almany, Glenn R., Hamilton, Richard J., Bode, Michael, Matawai, Manuai, Potuku, Tapas, Saenz-Agudelo, Pablo, Planes, Serge, Berumen, Michael L., Rhodes, Kevin L., Thorrold, Simon R., Russ, Garry R., and Jones, Geoffrey P. (2013) Dispersal of grouper larvae drives local resource sharing in a coral reef fishery. Current Biology, 23 (7). pp. 626-630.

Albright, Rebecca, and Mason, Benjamin (2013) Projected near-future levels of temperature and pCO2 reduce coral fertilization success. PLoS ONE, 8 (2). pp. 1-8.

Abrantes, Kátya, Barnett, Adam, Marwick, Trent R., and Bouillon, Steven (2013) Importance of terrestrial subsidies for estuarine food webs in contrasting East African catchments. Ecosphere, 4 (1). pp. 1-33.

Albert, Simon, Love, Mark, and Brewer, Tom D. (2013) Contrasts in social and ecological assessments of coral reef health in Melanesia. Pacific Science, 67 (3). pp. 409-424.

Allan, Bridie J.M., Domenici, Paolo, McCormick, Mark I., Watson, Sue-Ann, and Munday, Philip L. (2013) Elevated CO2 affects predator-prey interactions through altered performance. PLoS One, 8 (3). pp. 1-7.

Andrello, Marco, Mouillot, David, Beuvier, Jonathan, Albouy, Camille, Thuiller, Wilfried, and Manel, Stéphanie (2013) Low connectivity between Mediterranean marine protected areas: a biophysical modeling approach for the dusky grouper Epinephelus marginatus. PLoS ONE, 8 (7). pp. 1-15.

Albouy, Camille, Guilhaumon, François, Leprieur, Fabien, Lasram, Frida Ben Rais, Somot, Samuel, Aznar, Roland, Velez, Laure, Le Loc'h, Francois, and Mouillot, David (2013) Projected climate change and the changing biogeography of coastal Mediterranean fishes. Journal of Biogeography, 40 (3). pp. 534-547.

Abrego, David, Willis, Bette L., and van Oppen, Madeleine J.H. (2012) Impact of light and temperature on the uptake of algal symbionts by coral juveniles. PLoS ONE, 7 (11). pp. 1-9.

Abrantes, Kátya G., Semmens, Jayson M., Lyle, Jeremy M., and Nichols, Peter D. (2012) Normalisation models for accounting for fat content in stable isotope measurements in salmonid muscle tissue. Marine Biology, 159 (1). pp. 57-64.

Anderson, Kristen, Pratchett, Morgan, and Baird, Andrew (2012) Summer growth rates of corals at Lord Howe Island, Australia. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Aragones, Lemnuel V., Lawler, Ivan, Marsh, Helene, Domning, Daryl, and Hodgson, Amanda (2012) The role of sirenians in aquatic ecosystems. In: Hines, Ellen M., Reynolds III, John E., Aragones, Lemnuel V., Mignucci-Giannoni, Antonio A., and Marmotel, Miriam, (eds.) Sirenian Conservation. University Press of Florida, Florida USA, pp. 4-11.

Aswani, Shankar, Christie, Patrick, Muthiga, Nyawira A., Mahon, Robin, Primavera, Jurgenne H., Cramer, Lori A., Granek, Elise F., Kennedy, Chris J., Wolanski, Eric, and Hacker, Sally (2012) The way forward with ecosystem-based management in tropical contexts: reconciling with existing management systems. Marine Policy, 36 (1). pp. 1-10.

Ainsworth, T.D., Wasmund, K., Ukani, L., Seneca, F., Yellowlees, D., Miller, D., and Leggat, W. (2011) Defining the tipping point. A complex cellular life/death balance in corals in response to stress. Scientific Report, 1. pp. 1-9.

Abesamis, Rene A. (2011) Replenishment and connectivity of reef fish populations in the central Philippines. PhD thesis, James Cook University.

Ateweberhan, M., McClanahan, T.R., Graham, N.A.J., and Sheppard, C.R.C. (2011) Episodic heterogeneous decline and recovery of coral cover in the Indian Ocean. Coral Reefs, 30 (3). pp. 739-752.

Aeby, Greta S., Williams, Gareth J., Franklin, Erik C., Haapkyla, Jessica, Harvell, C. Drew, Neale, Stephen, Page, Cathie A., Raymundo, Laurie, Vargas-Ángel, Bernardo, Willis, Bette L., Work, Thierry M., and Davy, Simon K. (2011) Growth anomalies on the coral genera Acropora and Porites are strongly associated with host density and human population size across the Indo-Pacific. PLoS ONE, 6 (2). pp. 1-9.

Abrantes, Kátya Gisela, Lyle, Jeremy Martin, Nichols, Peter D., and Semmens, Jayson Mark (2011) Do exotic salmonids feed on native fauna after escaping from aquaculture cages in Tasmania, Australia? Canadian Journal of Fisheries and Aquatic Sciences, 68 (9). pp. 1539-1551.

Abrantes, Kátya G., and Barnett, Adam (2011) Intrapopulation variations in diet and habitat use in a marine apex predator, the broadnose sevengill shark Notorynchus cepedianus. Marine Ecology Progress Series, 442. pp. 133-148.

Abesamis, R.A., and Russ, G.R. (2010) Patterns of recruitment of coral reef fishes in a monsoonal environment. Coral Reefs, 29 (4). pp. 911-921.

Abrantes, Kátya Gisela, and Sheaves, Marcus (2010) Importance of freshwater flow in terrestrial–aquatic energetic connectivity in intermittently connected estuaries of tropical Australia. Marine Biology, 157 (9). pp. 2071-2086.

Alva-Campbell, Yvette, Floeter, Sergio R., Robertson, D. Ross, Bellwood, David R., and Bernardi, Giacomo (2010) Molecular phylogenetics and evolution of Holacanthus angelfishes (Pomacanthidae). Molecular Phylogenetics and Evolution, 56 (1). pp. 456-461.

Aswani, Shankar, and Sabetian, Armagan (2010) Implications of urbanization for artisanal parrotfish fisheries in the Western Solomon Islands. Conservation Biology, 24 (2). pp. 520-530.

Ardiwijaya, Rizya, Baird, Andrew, Kartawijaya, Tasrif, and Campbell, Stuart (2010) Changes in reef fish biomass in Karimunjawa National Park: a test of the effectiveness of government gazetted marine parks in Indonesia. In: Proceedings of the 11th International Coral Reef Symposium, pp. 1064-1068. From: 11th International Coral Reef Symposium, 07 - 11 July 2008, Fort Lauderdale, FL, USA.

Adjeroud, M., Fernandez, J.M., Carroll, A.G., Harrison, P.L., and Penin, L. (2010) Spatial patterns and recruitment processes of coral assemblages among contrasting environmental conditions in the southwestern lagoon of New Caledonia. Marine Pollution Bulletin, 61 (7-12). pp. 375-386.

Abrantes, Kátya, and Sheaves, Marcus (2010) Use of a δ13C–δ15N relationship to determine animal trophic positions in a tropical Australian estuarine wetland. Austral Ecology, 35 (1). pp. 96-103.

Adjeroud, M., Michonneau, F, Edmunds, P.J., Chancerelle, Y., Lison de Loma, T., Penin, L., Thibaut, L., Vidal-Dupiol, J., Salvat, B., and Galzin, R. (2009) Recurrent disturbances, recovery trajectories, and resilience of coral assemblages on a South Central Pacific reef. Coral Reefs, 28 (3). pp. 775-780.

Abrantes, Kátya, and Sheaves, Marcus (2009) Sources of nutrition supporting juvenile penaeid prawns in an Australian dry tropics estuary. Marine and Freshwater Research, 60 (9). pp. 949-959.

Abrego, David A., van Oppen, Madeleine J.H., and Willis, Bette L. (2009) Onset of algal endosymbiont specificity varies among closely related species of Acropora corals during early ontogeny. Molecular Ecology, 18 (16). pp. 3532-3543.

Almany, G.R., Connolly, S.R., Heath, D.D., Hogan, J.D., Jones, G.P., McCook, L.J., Mills, M., Pressey, R.L., and Williamson, D.H. (2009) Connectivity, biodiversity conservation and the design of marine reserve networks for coral reefs. Coral Reefs, 28 (2). pp. 339-351.

Abrantes, Kátya, and Sheaves, Marcus (2009) Food web structure in a near-pristine mangrove area of the Australian Wet Tropics. Estuarine, Coastal and Shelf Science, 82 (4). pp. 597-607.

Adams, Lisa M., Cumbo, Vivian, and Takabayashi, Misaki (2009) Exposure to sediment enhances primary acquisition of Symbiodinium by asymbiotic coral larvae. Marine Ecology Progress Series, 377. pp. 179-156.

Abrego, David, van Oppen, Madeleine J.H., and Willis, Bette L. (2009) Highly infectious symbiont dominates initial uptake in coral juveniles. Molecular Ecology, 18. pp. 3518-3531.

Abrego, David (2008) Temporal and environmental influences on the early establishment and maintenance of coral-symbiodinium symbioses. PhD thesis, James Cook University.

Abrantes, Katya, and Sheaves, Marcus (2008) Incorporation of terrestrial wetland material into aquatic food webs in a tropical estuarine wetland. Estuarine, Coastal and Shelf Science , 80 (3). pp. 401-412.

Abrego, David, Ulstrup, Karin E., Willis, Bette L., and van Oppen, Madeleine J.H. (2008) Species-specific interactions between algal endosymbionts and coral hosts define their bleaching response to heat and light stress. Proceedings of the Royal Society of London Series B, Biological Sciences, 275 (1648). pp. 2273-2282.

Abrantes, Kátya Gisela dos Santos (2008) Trophic structure and the importance of terrestrial wetland producers for aquatic food webs in tropical Australian estuaries. PhD thesis, James Cook University.

Al-Habsi, S. H., Sweeting, C. J., Polunin, N. V. C., and Graham, Nicholas (2008) δ15N and δ13C elucidation of size structured food webs in a Western Arabian Sea demersal trawl assemblage. Marine Ecology Progress Series, 353. pp. 55-63.

Anthony, Shelley L., and Thomas, Séverine (2008) Coral Husbandry and Long-Term Coral Survival in the Coral Reef Exhibit at Reef HQ Aquarium, Townsville, Australia. Report. Burgers' Zoo, Arnhem, Netherlands.

Anthony, S.L., Page, C.A., Bourne, D.G., and Willis, B.L. (2008) Newly characterized distinct phases of the coral disease 'atramentous necrosis' on the Great Barrier Reef. Diseases of Aquatic Organisms, 81 (3). pp. 255-259.

Arvedlund, M., Munday, P.L., and Takemura, A. (2007) The morphology and ultrastructure of the peripheral olfactory organ in newly metamorphosed coral-dwelling gobies, Paragobiodon xanthosomus Bleeker (Gobiidae, Teleostei). Tissue and Cell, 39 (5). pp. 335-342.

Adjeroud, Mehdi, Pratchett, Morgan, Kospartov, Marie, Lejeusne, Christophe, and Penin, Lucie (2007) Small-scale variability in the size structure of scleractinian corals around Moorea, French Polynesia : patterns across depths and locations. Hydrobiologia, 589 (1). pp. 117-126.

Almany, Glenn R., Peacock, Lisa F., Syms, Craig, McCormick, Mark I., and Jones, Geoffrey P. (2007) Predators target rare prey in coral reef fish assemblages. Oecologia, 152 (4). pp. 751-761.

Anthony, K.R.N., and Kerswell, A.P. (2007) Coral mortality following extreme low tides and high solar radiation. Marine Biology, 151 (5). pp. 1623-1631.

Almany, Glenn R. , Berumen, Michael L., Thorrold, Simon R., Planes, Serge, and Jones, Geoffrey P. (2007) Local replenishment of coral reef fish populations in a marine reserve. Science, 316 (5825). pp. 742-744.

Anthony, Kenneth R.N., Connolly, Sean R., and Hoegh-Guldberg, Ove (2007) Bleaching, energetics, and coral mortality risk: Effects of temperature, light, and sediment regime. Limnology and Oceanography, 52 (2). pp. 716-726.

Anderson, J.L., Laurel, B.J., and Brown, J.A. (2007) Diel changes in behaviour and habitat use by age-O Atlantic cod (Gadus morhua L.) in the laboratory and field. Journal of Experimental Marine Biology and Ecology, 351 (1-2). pp. 267-275.

Aragones, Lemnuel V., Lawler, Ivan R., Foley, William J., and Marsh, Helene (2006) Dugong grazing and turtle cropping: grazing optimization in tropical seagrass systems? Oecologia, 149 (4). pp. 635-647.

Andrefouet, S., Ouillon, S., Brinkman, R., Falter, J., Douillet, P., Wolk, F., Smith, R., Garen, P., Martinez, E., Laurent, V., Lo, C., Remoissenet, G., Scourzic, B., Gilbert, A., Deleersnijder, E., Steinberg, C., Choukroun, S., and Buestel, D. (2006) Review of solutions for 3D hydrodynamic modeling applied to aquaculture in South Pacific atoll lagoons. Marine Pollution Bulletin, 52 (10). pp. 1138-1155.

Alcala, AngelC., and Russ, Garry R. (2006) No-take Marine Reserves and Reef Fisheries Management in the Philippines: a new people power revolution. Ambio, 35 (5). pp. 245-254.

Abesamis, Rene A., Alcala, Angel C., and Russ, Garry R. (2006) How much does the fishery at Apo Island benefit from spillover of adult fish from the adjacent marine reserve? Fishery Bulletin, 104 (3). pp. 360-375.

Abesamis, Rene, Russ, Garry, and Alcala, Angel (2006) Gradients of abundance of fish across no-take marine reserve boundaries: evidence from Philippine coral reefs. Aquatic Conservation: marine and freshwater ecosystems , 16 (4). pp. 349-371.

Almany, Glenn R., and Webster, Michael S. (2006) The predation gauntlet: early post-settlement mortality in reef fishes. Coral Reefs, 25 (1). pp. 19-22.

Abesamis, Rene A., and Russ, Garry R. (2005) Density-dependent spillover from a marine reserve: long-term evidence. Ecological Applications, 15 (5). pp. 1798-1812.

Arthur, Rohan, Done, Terence J., and Marsh, Helene (2005) Benthic recovery four years after an El Niño-induced coral mass mortality in the Lakshadweep atolls. Current Science, 89 (4). pp. 694-699.

Annese, Danielle M., and Kingsford, Michael J. (2005) Distribution, movements and diet of nocturnal fishes on temperate reefs. Environmental Biology of Fishes, 72 (2). pp. 161-174.

Abesamis, Rene A. (2005) Patterns and mechanisms of spillover from marine reserves. Masters (Research) thesis, James Cook University.

Alcala, Angel C., Russ, Garry R., Maypa, Aileen P., and Calumpong, Hilconida C. (2005) A long-term, spatially replicated experimental test of the effect of marine reserves on local fish yields. Canadian Journal of Fisheries and Aquatic Sciences, 62 (1). pp. 98-108.

Anthony, K.R.N., Hoogenboom, M. O., and Connolly, S.R. (2005) Adaptive variation in coral geometry and the optimization of internal colony light climates. Functional Ecology, 19 (1). pp. 17-26.

Andre, Jessica, Gyuris, Emma, and Lawler, Ivan R. (2005) Comparison of the diets of sympatric dugongs and green turtles on the Orman Reefs, Torres Strait, Australia. Wildlife Research, 32 (1). pp. 53-62.

Anthony, Kenneth R. N., and Connolly, Sean R. (2004) Environmental limits to growth: physiological niche boundaries of corals along turbidity - light gradients. Oecologia, 141 (3). pp. 373-384.

Almany, Glenn R. (2004) Does increased habitat complexity reduce predation and competition in coral reef fish assemblages? Oikos, 106 (2). pp. 275-284.

Ackerman, John L., Bellwood, David R., and Brown, James H. (2004) The contribution of small individuals to density-body size relationships: examination of energetic equivalence in reef fishes. Oecologia, 139 (4). pp. 568-571.

Almany, Glenn R (2004) Differential effects of habitat complexity, predators and competitors on abundance of juvenile and adult coral reef fishes. Oecologia, 141 (1). pp. 105-113.

Ackerman, J. L. (2004) Geographic variation in size at age of the coral reef fish, Thalassoma lunare (family: Labridae) : a contribution to life history theory. PhD thesis, James Cook University.

Almany, Glenn R., and Webster, Michael S. (2004) Odd species out as predators reduce diversity of coral-reef fishes. Ecology, 85 (11). pp. 2933-2937.

Abdulla, Ameer (2004) Predator-prey interactions in coral reef fish : the implications of predation risk on the behavior and growth of prey. PhD thesis, James Cook University.

Almany, Glenn R (2004) Priority effects in coral reef fish communities of the Great Barrier Reef. Ecology, 85 (10). pp. 2872-2880.

Anthony, Kenneth R.N., and Hoegh-Guldberg, Ove (2003) Kinetics of photoacclimation in corals. Oecologia, 134 (1). pp. 23-31.

Adams, S. (2003) Morphological ontogeny of the gonad of three plectropomid species through sex differentiation and transition. Journal of Fish Biology, 63 (1). pp. 22-36.

Almany, Glenn R (2003) Priority effects in coral reef fish communities. Ecology, 84 (7). pp. 1920-1935.

Ackerman, J.L., and Bellwood, D.R. (2002) Comparative efficiency of clove oil and rotenone for sampling tropical reef fish assemblages. Journal of Fish Biology, 60 (4). pp. 893-901.

Adams, S., and Williams, A.J. (2001) A preliminary test of the transitional growth spurt hypothesis using the protogynous coral trout Plectropomus maculatus. Journal of Fish Biology, 59 (1). pp. 183-185.

Ackerman, John L., and Bellwood, David R. (2000) Reef fish assemblages: a re-evaluation using enclosed rotenone stations. Marine Ecology-Progress Series, 206. pp. 227-237.

Ayre, David J., and Hughes, Terence P. (2000) Genotypic diversity and gene flow in brooding and spawning corals along the Great Barrier Reef, Australia. Evolution, 54 (5). pp. 1590-1605.

Anthony, Kenneth R.N., and Fabricius, Katharina E. (2000) Shifting roles of heterotrophy and autotrophy in coral energetics under varying turbidity. Journal of Experimental Marine Biology and Ecology, 252 (2). pp. 221-253.

Adams, S., Mapstone, B.D., Russ, G.R., and Davies, C.R. (2000) Geographic variation in the sex ratio, sex specific size, and age structure of Plectropomus leopardus (Serranidae) between reefs open and closed to fishing on the Great Barrier Reef. Canadian Journal of Fisheries and Aquatic Sciences, 57 (7). pp. 1448-1458.

Anthony, K.R.N. (2000) Enhanced particle-feeding capacity of corals on turbid reefs (Great Barrier Reef, Australia). Coral Reefs, 19 (1). pp. 59-67.

Arvedlund, Michael, Bundgaard, Ingvar, and Nielsen, Lis E. (2000) Host imprinting in anemonefishes (Pisces: Pomacentridae): does it dictate spawning site preferences? Environmental Biology of Fishes, 58 (2). pp. 203-213.

Aragones, Lemnuel, and Marsh, Helene (2000) Impact of dugong grazing and turtle cropping on tropical seagrass communities. Pacific Conservation Biology, 5 (4). pp. 277-288.

Arvedlund, Michael, Larsen, Kim, and Winsor, Heather (2000) The embryonic development of the olfactory system in Amphiprion melanopus (Perciformes: Pomacentridae) related to the host imprinting hypothesis. Journal of the Marine Biological Association of the United Kingdom, 80 (6). pp. 1103-1109.

Anthony, Kenneth Roald Nies (1999) Sediment: stress factor or food source for reef corals. PhD thesis, James Cook University.

Anthony, Kenneth R.N. (1999) A tank system for studying benthic aquatic organisms at predictable levels of turbidity and sedimentation: case study examining coral growth. Limnology and Oceanography, 44 (6). pp. 1415-1422.

Anthony, Kenneth R.N. (1999) Coral suspension feeding on fine particulate matter. Journal of Experimental Marine Biology and Ecology, 232 (1). pp. 85-106.

Arvedlund, Michael, McCormick, Mark I., Fautin, Daphne G., and Bildsøe, Mogens (1999) Host recognition and possible imprinting in the anemonefish Amphiprion melanopus (Pisces: Pomacentridae). Marine Ecology Progress Series, 188. pp. 207-218.

Ayre, David J., Hughes, Terence P., and Standish, Rachel J. (1997) Genetic differentiation, reproductive mode, and gene flow in the brooding coral pocillopora damicornis along the Great Barrier Reef, Australia. Marine Ecology Progress Series, 159. pp. 175-187.

Aragones, Lemnuel V. (1996) Dugongs and green turtles: grazers in the tropical seagrass ecosystem. PhD thesis, James Cook University of North Queensland.

B

Brandl, Simon J., and Bellwood, David R. (2016) Microtopographic refuges shape consumer‑producer dynamics by mediating consumer functional diversity. Oecologia, 182 (1). pp. 203-217.

Bridge, Tom C.L., Luiz, Osmar J., Coleman, Richard R., Kane, Corinne N., and Kosaki, Randall K. (2016) Ecological and morphological traits predict depth-generalist fishes on coral reefs. Proceedings of the Royal Society of London Series B, Biological Sciences, 283 (1823). pp. 1-9.

Brandl, Simon Johannes (2016) Functional niche partitioning in herbivorous coral reef fishes. PhD thesis, James Cook University.

Beaman, Robin J., Bridge, Tom C. L., Lüter, Carsten, Reitner, Joachim, and Wörheide, Gert (2016) Spatial patterns in the distribution of benthic assemblages across a large depth gradient in the Coral Sea, Australia. Marine Biodiversity. (In Press)

Baird, Mark E., Adams, Matthew P., Babcock, Russell C., Oubelkheir, Kadija, Mongin, Mathieu, Wild-Allen, Karen A., Skerratt, Jennifer, Robson, Barbara J., Petrou, Katherina, Ralph, Peter J., O’Brien, Katherine R., Carter, Alex B., Jarvis, Jessie C., and Rasheed, Michael A. (2016) A biophysical representation of seagrass growth for application in a complex shallow-water biogeochemical model. Ecological Modelling, 325. pp. 13-27.

Barros, Breno, Sakai, Yoichi, Pereira, Pedro H.C., Gasset, Eric, Buchet, Vincent, Maamaatuaiahutapu, Moana, Ready, Jonathan S., Oliveira, Yrlan, Giarrizzo, Tommaso, and Vallinoto, Marcelo (2015) Comparative allometric growth of the mimetic ephippid reef fishes Chaetodipterus faber and Platax orbicularis. PLoS ONE, 10 (12).

Baker, Linda, Edwards, Will, and Pike, David A. (2015) Sea turtle rehabilitation success increases with body size and differs among species. Endangered Species Research, 29 (1). pp. 13-21.

Bellwood, David R., Goatley, Christopher H.R., Bellwood, Orpha, Delbarre, Daniel J., and Friedman, Matt (2015) The rise of jaw protrusion in spiny-rayed fishes closes the gap on elusive prey. Current Biology, 25 (20). pp. 2696-2700.

Brandl, Simon J., and Bellwood, David R. (2015) Coordinated vigilance provides evidence for direct reciprocity in coral reef fishes. Scientific Reports, 5.

Bouwmeester, Jessica, Benzoni, Francesca, Baird, Andrew H., and Berumen, Michael L. (2015) Cyphastrea kausti sp n. (Cnidaria, Anthozoa, Scleractinia), a new species of reef coral from the Red Sea. ZooKeys, 496. pp. 1-13.

Boaden, A.E., and Kingsford, M.J. (2015) Predators drive community structure in coral reef fish assemblages. Ecosphere, 6 (4). pp. 1-33.

Biggs, Duan, Hicks, Christina C., Cinner, Joshua E., and Hall, C. Michael (2015) Marine tourism in the face of global change: the resilience of enterprises to crises in Thailand and Australia. Ocean & Coastal Management, 105. pp. 65-74.

Bouwmeester, J., Baird, A.H., Chen, C.J., Guest, J.R., Vicentuan, K.C., and Berumen, M.L. (2015) Multi-species spawning synchrony within scleractinian coral assemblages in the Red Sea. Coral Reefs, 34 (1). pp. 65-77.

Buelow, Christina, and Sheaves, Marcus (2015) A birds-eye view of biological connectivity in mangrove systems. Estuarine, Coastal and Shelf Science, 152. pp. 33-43.

Baird, Andrew H., Cumbo, Vivian R., Gudge, Sallyann, Keith, Sally A., Maynard, Jeffrey A., Tan, Chun-Hong, and Woolsey, Erika S. (2015) Coral reproduction on the world's southernmost reef at Lord Howe Island, Australia. Aquatic Biology, 23 (3). pp. 275-284.

Brandl, Simon J., Robbins, William D., and Bellwood, David R. (2015) Exploring the nature of ecological specialization in a coral reef fish community: morphology, diet and foraging microhabitat use. Proceedings of the Royal Society of London Series B, Biological Sciences, 282 (1815). pp. 1-10.

Baker, Ronald, Sheaves, Marcus, and Johnston, Ross (2015) Geographic variation in mangrove flooding and accessibility for fishes and nektonic crustaceans. Hydrobiologia, 762 (1). pp. 1-14.

Bruce, Niel L. (2015) Joeropsididae Nordenstam, 1933 (Crustacea, Isopoda, Asellota) from the Lizard Island region of the Great Barrier Reef, Queensland, Australia. ZooKeys, 491. pp. 1-62.

Brien, H.V., Watson, S.-A., and Hoogenboom, M.O. (2015) Presence of competitors influences photosynthesis, but not growth, of the hard coral Porites cylindrica at elevated seawater CO2. ICES Journal of Marine Science, 73 (3). pp. 659-669.

Battaglia, P., Malara, D., Ammendolia, G., Romeo, T., and Andaloro, F. (2015) Relationships between otolith size and fish length in some mesopelagic teleosts (Myctophidae, Paralepididae, Phosichthyidae and Stomiidae). Journal of Fish Biology, 87 (3). pp. 774-782.

Bourne, D.G., Ainsworth, T.D., Pollock, F.J., and Willis, B.L. (2015) Towards a better understanding of white syndromes and their causes on Indo-Pacific coral reefs. Coral Reefs, 34 (1). pp. 233-242.

Bellwood, David R., Goatley, Christopher H.R., Cowman, Peter F., and Bellwood, Orpha (2015) The evolution of fishes on coral reefs: fossils, phylogenies and functions. In: Mora, Camilo, (ed.) Ecology of Fishes on Coral Reefs. Cambridge University Press, Cambridge, UK, pp. 55-63.

Bonin, Mary C., Böstrom-Einarsson, Lisa, Munday, Philip L., and Jones, Geoffrey P. (2015) The prevalence and importance of competition among coral reef fishes. Annual Review of Ecology, Evolution, and Systematics, 46. pp. 169-190.

Brooker, R.M., Munday, P.L., Brandl, S.J., and Jones, G.P. (2014) Local extinction of a coral reef fish explained by inflexible prey choice. Coral Reefs, 33 (4). pp. 891-896.

Bridge, Thomas C.L., Ferrari, Renata, Bryson, Mitch, Hovey, Renae, Figueira, Will F., Williams, Stefan B., Pizarro, Oscar, Harborne, Alastair R., and Byrne, Maria (2014) Variable responses of benthic communities to anomalously warm sea temperatures on a high-latitude coral reef. PLoS ONE, 9 (11). pp. 1-20.

Ban, Stephen Shigeyoshi (2014) Multiple stressor effects on coral reefs. PhD thesis, James cook University.

Brandl, S.J., Hoey, A.S., and Bellwood, D.R. (2014) Micro-topography mediates interactions between corals, algae, and herbivorous fishes on coral reefs. Coral Reefs, 33 (2). pp. 421-430.

Brooker, Rohan Maurice Ralfe (2014) Determinants of resource specialisation and its ecological consequences for the corallivorous filefish, Oxymonacanthus longirostris. PhD thesis, James Cook University.

Brandl, Simon J., and Bellwood, David R. (2014) Individual-based analyses reveal limited functional overlap in a coral reef fish community. Journal of Animal Ecology, 83 (3). pp. 661-670.

Ban, Stephen S., Graham, Nicholas A.J., and Connolly, Sean R. (2014) Evidence for multiple stressor interactions and effects on coral reefs. Global Change Biology, 20 (3). pp. 681-697.

Baker, Ronald, Buckland, Amanda, and Sheaves, Marcus (2014) Fish gut content analysis: robust measures of diet composition. Fish and Fisheries, 15 (1). pp. 170-177.

Ban, Stephen S., Pressey, Robert L., and Graham, Nicholas A.J. (2014) Assessing interactions of multiple stressors when data are limited: a Bayesian belief network applied to coral reefs. Global Environmental Change, 27. pp. 64-72.

Ban, Natalie C., Maxwell, Sara M., Dunn, Daniel C., Hobday, Alistair J., Bax, Nicholas J., Ardron, Jeff, Gjerde, Kristina M., Game, Edward T., Devillers, Rodolphe, Kaplan, David M., Dunstan, Piers K., Halpin, Patrick N., and Pressey, Robert L. (2014) Better integration of sectoral planning and management approaches for the interlinked ecology of the open oceans. Marine Policy, 49. pp. 127-136.

Burge, Colleen A., Eakin, C. Mark, Friedman, Carolyn S., Froelich, Brett, Hershberger, Paul K., Hofmann, Eileen E., Petes, Laura E., Prager, Katherine C., Weil, Ernesto, Willis, Bette, Ford, Susan E., and Harvell, C. Drew (2014) Climate change influences on marine infectious diseases: implications for management and society. Annual Review of Marine Science, 6. pp. 249-277.

Battaglia, P., Esposito, V., Malara, D., Falautano, M., Castriota, L., and Andaloro, F. (2014) Diet of the spothead lanternfish Diaphus metopoclampus (Cocco, 1829) (Pisces: Myctophidae) in the central Mediterranean Sea. Italian Journal of Zoology, 81 (4). pp. 530-543.

Boström-Einarsson, Lisa, Bonin, Mary C., Munday, Philip L., and Jones, Geoffrey P. (2014) Habitat degradation modifies the strength of interspecific competition in coral dwelling damselfishes. Ecology, 95 (11). pp. 3056-3067.

Baker, Ronald, Fujiwara, Masami, and Minello, Thomas J. (2014) Juvenile growth and mortality effects on white shrimp Litopenaeus setiferus population dynamics in the northern Gulf of Mexico. Fisheries Research, 155. pp. 74-82.

Brunnschweiler, Juerg M., Abrantes, Kátya G., and Barnett, Adam (2014) Long-term changes in species composition and relative abundances of sharks at a provisioning site. PLoS ONE, 9 (1). pp. 1-10.

Bauman, Andrew G., Baird, Andrew H., Burt, John A., Pratchett, Morgan S., and Feary, David A. (2014) Patterns of coral settlement in an extreme environment: the southern Persian Gulf (Dubai, United Arab Emirates). Marine Ecology Progress Series, 499. pp. 115-126.

Bosiger, Yoland J., and McCormick, Mark I. (2014) Temporal links in daily activity patterns between coral reef predators and their prey. PLoS ONE, 9 (10). pp. 1-11.

Brooker, Rohan M., Munday, Philip L., Chivers, Douglas P., and Jones, Geoffrey P. (2014) You are what you eat: diet-induced chemical crypsis in a coral-feeding reef fish. Proceedings of the Royal Society of London Series B, Biological Sciences, 282 (1799). pp. 1-7.

Bellwood, David R., and Pratchett, Morgan S. (2014) The origins and diversification of coral reef butterflyfishes. In: Pratchett, Morgan S., Berumen, Michael L., and Kapoor, B.G., (eds.) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA, pp. 1-18.

Barnett, Leonie J., Miller, Terrence L., and Cribb, Thomas H. (2014) A review of the currently recognised opecoelid cercariae, including the identification and emergence ecology of Cercaria capricornia XII (Digenea: Opecoelidae) from Nassarius olivaceus (Gastropoda: Nassariidae) in Central Queensland, Australia. Parasitology International, 63 (5). pp. 670-682.

Bongaerts, P., Muir, P., Englebert, N., Bridge, T.C.L., and Hoegh-Guldberg, O. (2013) Cyclone damage at mesophotic depths on Myrmidon Reef (GBR). Coral Reefs, 32 (4). p. 935.

Bijoux, J.P., Dagorn, L., Gaertner, J.-C., Cowley, P.D., and Robinson, J. (2013) The influence of natural cycles on coral reef fish movement: implications for underwater visual census (UVC) surveys. Coral Reefs, 32 (4). pp. 1135-1140.

Baird, Andrew H., Cumbo, Vivian R., Figueiredo, Joana, and Harii, Saki (2013) A pre-zygotic barrier to hybridization in two con-generic species of scleractinian corals. F1000Research, 2. pp. 1-5.

Bridge, Tom C.L., Hoey, Andrew S., Campbell, Stuart J., Muttaquin, Efin, Rudi, Edi, Fadli, Nur, and Baird, Andrew H. (2013) Depth-dependent mortality of reef corals following a severe bleaching event: implications for thermal refuges and population recovery. F1000Research, 2. pp. 1-12.

Bradbury, Dominique (2013) Inter- and intra- specific variation in bleaching susceptibility among scleractinian corals. PhD thesis, James Cook University.

Boström-Einarsson, Lisa, Bonin, Mary C., Munday, Philip L., and Jones, Geoffrey P. (2013) Strong intraspecific competition and habitat selectivity influence abundance of a coral-dwelling damselfish. Journal of Experimental Marine Biology and Ecology, 448. pp. 85-92.

Brooker, Rohan M., Jones, Geoffrey P., and Munday, Philip L. (2013) Within-colony feeding selectivity by a corallivorous reef fish: foraging to maximize reward? Ecology and Evolution, 3 (12). pp. 4109-4118.

Boaden, A.E., and Kingsford, M.J. (2013) Distributions and habitat associations of the bridled monocle bream Scolopsis bilineatus (Nemipteridae): a demographic approach. Journal of Fish Biology, 83 (3). pp. 618-641.

Brooker, R.M., Munday, P.L., Mcleod, I.M., and Jones, G.P. (2013) Habitat preferences of a corallivorous reef fish: predation risk versus food quality. Coral Reefs, 32 (3). pp. 613-622.

Baker, Ronald, Fry, Brian, Rozas, Lawrence P., and Minello, Thomas J. (2013) Hydrodynamic regulation of salt marsh contributions to aquatic food webs. Marine Ecology Progress Series, 490. pp. 37-52.

Brandl, S.J., and Bellwood, D.R. (2013) Morphology, sociality, and ecology: can morphology predict pairing behavior in coral reef fishes? Coral Reefs, 32 (3). pp. 835-846.

Blowes, Shane A., Pratchett, Morgan S., and Connolly, Sean R. (2013) Heterospecific aggression and dominance in a guild of coral-feeding fishes: the roles of dietary ecology and phylogeny. American Naturalist, 182 (2). pp. 157-168.

Bauman, Andrew G., Feary, David A., Heron, Scott F., Pratchett, Morgan S., and Burt, John A. (2013) Multiple environmental factors influence the spatial distribution and structure of reef communities in the northeastern Arabian Peninsula. Marine Pollution Bulletin, 72 (2). pp. 302-312.

Burt, John A., Feary, David A., Cavalcante, Georgenes, Bauman, Andrew G., and Usseglio, Paolo (2013) Urban breakwaters as reef fish habitat in the Persian Gulf. Marine Pollution Bulletin, 72 (2). pp. 342-350.

Bell, Johann D., Ganachaud, Alexandre, Gehrke, Peter C., Griffiths, Shane P., Hobday, Alistair J., Hoegh-Guldberg, Ove, Johnson, Johanna E., Le Borgne, Robert, Lehodey, Patrick, Lough, Janice M., Matear, Richard J., Pickering, Timothy D., Pratchett, Morgan S., Sen Gupta, Alex, Senina, Inna, and Waycott, Michelle (2013) Mixed responses of tropical Pacific fisheries and aquaculture to climate change. Nature Climate Change, 3 (6). pp. 591-599.

Brandl, S.J., and Bellwood, D.R. (2013) Pair formation in the herbivorous rabbitfish Siganus doliatus. Journal of Fish Biology, 82 (6). pp. 2031-2044.

Brooker, Rohan M., Jones, Geoffrey P., and Munday, Philip L. (2013) Prey selectivity affects reproductive success of a corallivorous reef fish. Oecologia, 172 (2). pp. 409-416.

Bauman, Andrew Geoffrey (2013) The ecology and dynamics of coral reef communities in an extreme reef environment: the southern Persian Gulf. PhD thesis, James Cook University.

Bridge, Tom C.L., Hughes, Terry P., Guinotte, John M., and Bongaerts, Pim (2013) Call to protect all coral reefs. Nature Climate Change, 3. pp. 528-530.

Bell, Ian (2013) Algivory in hawksbill turtles: Eretmochelys imbricata food selection within a foraging area on the Northern Great Barrier Reef. Marine Ecology, 34 (1). pp. 43-55.

Bauman, Andrew G., Pratchett, Morgan S., Baird, Andrew H., Riegl, Bernhard, Heron, Scott F., and Feary, David A. (2013) Variation in the size structure of corals is related to environmental extremes in the Persian Gulf. Marine Environmental Research, 84. pp. 43-50.

Bijoux, Jude P., Dagorn, Laurent, Berke, Gregory, Cowley, Paul D., Soria, Marc, Gaertner, Jean-Claude, and Robinson, Jan (2013) Temporal dynamics, residency and site fidelity of spawning aggregations of a herbivorous tropical reef fish Siganus sutor. Marine Ecology Progress Series, 475. pp. 233-247.

Beck, Emadch (2013) Comparative phylogeography of four Indo–Pacific scarine labrids: an insight into the evolutionary patterns of reef fish. PhD thesis, James Cook University.

Baird, A.H., Pratchett, M.S., Hoey, A.S., Herdiana, Y., and Campbell, S.J. (2013) Acanthaster planci is a major cause of coral mortality in Indonesia. Coral Reefs, 32 (3). pp. 803-812.

Bender, Mariana G., Pie, Marcio R., Rezende, Enrico L., Mouillot, David, and Floeter, Sergio R. (2013) Biogeographic, historical and environmental influences on the taxonomic and functional structure of Atlantic reef fish assemblages. Global Ecology and Biogeography, 22 (11). pp. 1173-1182.

Baird, Andrew H., Nakamura, Takashi, and Yamasaki, Hideo (2013) Evolution of thermal thresholds: can corals adapt to projected rates of change in sea surface temperatures? Galaxea, Journal of Coral Reef Studies, 15 (Special Issue). pp. 366-372.

Barnett, Adam, Yick, Jonah L., Abrantes, Kátya G., and Awruch, Cynthia A. (2013) Trophic ecology of an abundant predator and its relationship with fisheries. Marine Ecology Progress Series, 494. pp. 241-248.

Berumen, M.L., Hoey, A.S., Bass, W.H., Bouwmeester, J., Catania, D., Cochran, J.E.M., Khalil, M.T., Miyake, S., Mughal, M.R., Spaet, J.L.Y., and Saenz-Agudelo, P. (2013) The status of coral reef ecology research in the Red Sea. Coral Reefs, 32 (3). pp. 737-748.

Basset, Alberto, Barbone, Enrico, Elliott, Michael, Li, Bai-Lian, Jorgensen, Sven Eric, Lucena-Moya, Paloma, Pardo, Isabel, and Mouillot, David (2013) A unifying approach to understanding transitional waters: fundamental properties emerging from ecotone ecosystems. Estuarine, Coastal and Shelf Science , 132. pp. 5-16.

Baird, Andrew, Sommer, Brigitte, and Madin, Joshua (2012) Pole-ward range expansion of Acropora spp. along the east coast of Australia. Coral Reefs, 31 (4). p. 1063.

Bode, Michael, Connolly, Sean R., and Pandolfi, John M. (2012) Species differences drive nonneutral structure in Pleistocene coral communities. American Naturalist, 180 (5). pp. 577-588.

Bellwood, David R., Baird, Andrew H., Depczynski, Martial, González-Cabello, Alonso, Hoey, Andrew S., Lefevre, Carine D., and Tanner, Jennifer K. (2012) Coral recovery may not herald the return of fishes on damaged coral reefs. Oecologia, 170 (2). 1- 7.

Boaden, A.E., and Kingsford, M.J. (2012) Diel behaviour and trophic ecology of Scolopsis bilineatus (Nemipteridae). Coral Reefs, 31 (3). pp. 871-883.

Bell, Ian Philip (2012) The Hawksbill turtle, Eretmochelys imbricate, (Linnaeus 1766): ecological insights of a resident population in the Northern Great Barrier Reef, Queensland, Australia. PhD thesis, James Cook University.

Berkstrom, Charlotte, Jones, Geoffrey P., McCormick, Mark I., and Srinivasan, Maya (2012) Ecological versatility and its importance for the distribution and abundance of coral reef wrasses. Marine Ecology Progress Series, 461. pp. 151-163.

Barnett, A., Braccini, J.M., Awruch, C.A., and Ebert, D.A. (2012) An overview on the role of Hexanchiformes in marine ecosystems: biology, ecology and conservation status of a primitive order of modern sharks. Journal of Fish Biology, 80 (5). pp. 966-990.

Berumen, M.L., Trip, E.D.L., Pratchett, M.S., and Choat, J.H. (2012) Differences in demographic traits of four butterflyfish species between two reefs of the Great Barrier Reef separated by 1,200 km. Coral Reefs, 31 (1). pp. 169-177.

Bonaldo, R.M., Welsh, J.Q., and Bellwood, D.R. (2012) Spatial and temporal variation in coral predation by parrotfishes on the GBR: evidence from an inshore reef. Coral Reefs, 31 (1). pp. 263-272.

Bonin, M.C. (2012) Specializing on vulnerable habitat: Acropora selectivity among damselfish recruits and the risk of bleaching-induced habitat loss. Coral Reefs, 31 (1). pp. 287-297.

Baird, Andrew H., Campbell, Stuart J., Fadli, Nur, Hoey, Andrew S., and Rudi, Edi (2012) The shallow water hard corals of Pulau Weh, Aceh Province, Indonesia. Aquaculture, Aquarium, Conservation and Legislation, 5 (1). pp. 23-28.

Bell, Ian, and Pike, David A. (2012) Somatic growth rates of hawksbill turtles Eretmochelys imbricata in a northern Great Barrier Reef foraging area. Marine Ecology Progress Series, 446. pp. 275-283.

Berumen, Michael L., Almany, Glenn R., Planes, Serge, Jones, Geoffrey P., Saenz-Agudelo, Pablo, and Thorrold, Simon R. (2012) Persistence of self-recruitment and patterns of larval connectivity in a marine protected area network. Ecology and Evolution, 2 (2). pp. 444-452.

Bannister, R.J., Battershill, C.N., and de Nys, R. (2012) Suspended sediment grain size and mineralogy across the continental shelf of the Great Barrier Reef: impacts on the physiology of a coral reef sponge. Continental Shelf Research, 32. pp. 86-95.

Beeden, Roger, Maynard, Jeffrey A., Marshall, Paul A., Heron, Scott F., and Willis, Bette L. (2012) A framework for responding to coral disease outbreaks that facilitates adaptive management. Environmental Management, 49 (1). pp. 1-13.

Barnes, Lachlan, Bellwood, David R., Sheaves, Marcus, and Tanner, Jennifer K. (2012) The use of clear-water non-estuarine mangroves by reef fishes on the Great Barrier Reef. Marine Biology, 159 (1). pp. 211-220.

Bridge, T., Scott, A., and Steinberg, D. (2012) Abundance and diversity of anemonefishes and their host sea anemones at two mesophotic sites on the Great Barrier Reef, Australia. Coral Reefs, 31 (4). pp. 1057-1062.

Beltran, Victor H., Dunlap, Walter C., and Long, Paul F. (2012) Comparison of the photosynthetic bleaching response of four coral species common to the central GBR. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-6. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Busilacchi, S., Williams, A.J., Russ, G.R., and Begg, G.A. (2012) Complexity of applying minimum legal sizes (MLS) of retention in an indigenous coral reef fishery. Fisheries Management and Ecology.

Baird, Andrew H., Emslie, Michael J., and Lewis, Andrew R. (2012) Extended periods of coral recruitment on the Great Barrier Reef. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Briffa, Mark, de la Haye, Kate, and Munday, Philip L. (2012) High CO2 and marine animal behaviour: potential mechanisms and ecological consequences. Marine Pollution Bulletin, 64 (8). pp. 1519-1528.

Bell, Ian, Schwarzkopf, Lin, and Manicom, Carryn (2012) High survivorship of an annually decreasing aggregation of hawksbill turtles, Eretmochelys imbricata, found foraging in the northern Great Barrier Reef. Aquatic Conservation: marine and freshwater ecosystems , 22 (5). pp. 673-682.

Bosiger, Yoland J., Lonnstedt, Oona M., McCormick, Mark I., and Ferrari, Maud C.O. (2012) Learning temporal patterns of risk in a predator-diverse environment. PLoS ONE, 7 (4). pp. 1-7.

Brewer, Thomas D., Cinner, Joshua E., Fisher, Rebecca, Green, Alison, and Wilson, Shaun K. (2012) Market access, population density, and socioeconomic development explain diversity and functional group biomass of coral reef fish assemblages. Global Environmental Change, 22 (2). pp. 399-406.

Bruggemann, J. Henrich, Rodier, Martine, Guillaume, Mireille M.M., Andréfouët, Serge, Arfi, Robert, Cinner, Joshua E., Pichon, Michel, Ramahatatra, Frederic, Rasoamanendrika, Faravavy, Zinke, Jens, and McClanahan, Tim R. (2012) Wicked social–ecological problems forcing unprecedented change on the latitudinal margins of coral reefs: the case of southwest Madagascar. Ecology and Society, 17 (4). pp. 1-17.

Benzoni, Francesca, Pichon, Michel, Dutrieux, Eric, Chaîneau, Claude-Henri, Abdulaziz, Malek, and Al-Thary, Ibrahim (2012) The scleractinian fauna of Yemen: diversity and species distribution patterns. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-6. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Bell, Ian, and Ariel, Ellen (2011) Dietary shift in green turtles. Seagrass-Watch News, 44. pp. 2-5.

Bongaerts, Pim, Sampayo, Eugenia M., Bridge, Thomas C.L., Ridgway, Tyrone, Vermeulen, Francisca, Englebert, Norbert, Webster, Jody M., and Hoegh-Guldberg, Ove (2011) Symbiodinium diversity in mesophotic coral communities on the Great Barrier Reef: a first assessment. Marine Ecology Progress Series, 439. pp. 117-126.

Brooker, R.M., Munday, P.L., and Jones, G.P. (2011) Coral obligate filefish masquerades as branching coral. Coral Reefs, 30 (3). p. 803.

Ban, Natalie, Adams, Vanessa, Almany, Glenn, Ban, Stephen, Cinner, Joshua, McCook, Laurence, Mills, Morena, Pressey, Bob, and White, Alan (2011) Designing, implementing and managing marine protected areas: emerging trends and opportunities for coral reef nations. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 21-31.

Browne, Nicola (2011) A carbonate and terrigenous sediment budget for inshore turbid reefs on the Great Barrier Reef. PhD thesis, James Cook University.

Beer, Nicola A., Wing, Stephen R., and Hu, Yi (2011) Physical versus biological control of element incorporation into biogenic carbonate: an in situ experiment in a New Zealand fjord. Marine Ecology Progress Series, 433. pp. 289-301.

Beukers-Stewart, B.D., Beukers-Stewart, J.S, and Jones, G.P. (2011) Behavioural and developmental responses of predatory coral reef fish to variation in the abundance of prey. Coral Reefs, 30 (3). pp. 855-864.

Bauman, A.G., Baird, A.H., and Cavalcante, G.H. (2011) Coral reproduction in the world's warmest reefs: southern Persian Gulf (Dubai, United Arab Emirates). Coral Reefs, 30 (2). pp. 405-413.

Bellwood, D.R., and Choat, J.H. (2011) Dangerous demographics: the lack of juvenile humphead parrotfishes Bolbometopon muricatum on the Great Barrier Reef. Coral Reefs, 30 (2). pp. 549-554.

Bonaldo, R.M., and Bellwood, D.R. (2011) Spatial variation in the effects of grazing on epilithic algal turfs on the Great Barrier Reef, Australia. Coral Reefs, 30 (2). pp. 381-390.

Barnett, Adam, Abrantes, Kátya G., Stevens, John D., and Semmens, Jayson M. (2011) Site fidelity and sex-specific migration in a mobile apex predator: implications for conservation and ecosystem dynamics. Animal Behaviour, 81 (5). pp. 1039-1048.

Beger, Maria, Babcock, Russ, Booth, David J., Bucher, Daniel, Condie, Scott A., Creese, Bob, Cvitanovic, Christopher, Dalton , Steve J., Harrison, Peter, Hoey, Andrew, Jordan, Alan, Loder, Jennifer, Malcolm, Hamish, Purcell, Steven W., Roelfsma, Chris, Sachs, Patrick , Smith, Stephen D.A., Sommer, Brigitte, Stuart-Smith, Rick, Thomson, Damian, Wallace, Carden C., Zann, Maria, and Pandolfi, John M. (2011) Research challenges to improve the management and conservation of subtropical reefs to tackle climate change threats. Ecological Management and Restoration, 12 (1). e7-e10.

Bennett, S., and Bellwood, D.R. (2011) Latitudinal variation in macroalgal consumption by fishes on the Great Barrier Reef. Marine Ecology Progress Series, 426. pp. 241-252.

Bonaldo, R.M., and Bellwood, D.R. (2011) Parrotfish predation on massive Porites on the Great Barrier Reef. Coral Reefs, 30 (1). pp. 259-269.

Bridge, T.C.L., Done, T.J., Beaman, R.J., Friedman, A., Williams, S.B., Pizarro, O., and Webster, J.M. (2011) Topography, substratum and benthic macrofaunal relationships on a tropical mesophotic shelf margin, central Great Barrier Reef, Australia. Coral Reefs, 30 (1). pp. 143-153.

Bonaldo, R.M., Krajewski, P.J., and Bellwood, D.R. (2011) Relative impact of parrotfish grazing scars on massive Porites corals at Lizard Island, Great Barrier Reef. Marine Ecology Progress Series, 423. pp. 223-233.

Baird, A.H., Blakeway, D.R., Hurley, T.J., and Stoddart , J.A. (2011) Seasonality of coral reproduction in the Dampier Archipelago, northern Western Australia. Marine Biology, 158 (2). pp. 275-285.

Burt, John A., Feary, David A., Bauman, Andrew G., Usseglio, Paolo, Cavalcante, Georgenes H., and Sale, Peter F. (2011) Biogeographic patterns of reef fish community structure in the northeastern Arabian Peninsula. ICES Journal of Marine Science, 68 (9). pp. 1875-1883.

Bonin, Mary C., Almany, Glenn R., and Jones, Geoffrey P. (2011) Contrasting effects of habitat loss and fragmentation on coral-associated reef fishes. Ecology, 92 (7). pp. 1503-1512.

Bouwmeester, Jessica, Berumen, Michael, and Baird, Andrew (2011) Daytime broadcast spawning of Pocillopora verrucosa on coral reefs of the central Red Sea. Galaxea, Journal of Coral Reef Studies, 13. pp. 23-24.

Baker, Ronald, and Minello, Thomas J. (2011) Trade-offs between gear selectivity and logistics when sampling nekton from shallow open water habitats: a gear comparison study. Gulf and Caribbean Research, 23. pp. 37-48.

Bridge, Thomas C.L., Done, Terrence J., Friedman, Ariell, Beaman, Robin J., Williams, Stefan B., Pizzaro, Oscar, and Webster, Jody M. (2011) Variability in mesophotic coral reef communities along the Great Barrier Reef, Australia. Marine Ecology Progress Series, 428. pp. 63-75.

Barba, Jacquelyn (2010) Demography of parrotfish: age, size and reproductive variables. Masters (Research) thesis, James Cook University.

Berumen, M. L, Walsh, H.J., Raventos, N., Planes, S., Jones, G.P., Starczak, V., and Thorrold, S.R. (2010) Otolith geochemistry does not reflect dispersal history of clownfish larvae. Coral Reefs, 29 (4). pp. 883-891.

Barbosa, M., Dornelas, M., and Magurran, A.E. (2010) Effects of polyandry on male phenotypic diversity. Journal of Evolutionary Biology, 23 (11). pp. 2442-2452.

Babcock, R.C., Shears, N.T., Alcala, A.C., Barrett, N.S., Edgar, G.J., Lafferty, K.D., McClanahan, T.R., and Russ, G.R. (2010) Decadal trends in marine reserves reveal differential rates of change in direct and indirect effects. Proceedings of the National Academy of Sciences of the United States of America, 107 (43). pp. 18256-18261.

Burt, John, Feary, David, Usseglio, Paolo, Bauman, Andrew, and Sale, Peter F. (2010) The influence of wave exposure on coral community development on man-made breakwater reefs, with a comparison to a natural reef. Bulletin of Marine Science, 86 (4). pp. 839-859.

Barnett, Adam, Redd, Kevin S., Frusher, Stewart D., Stevens, John D., and Semmens, Jayson M. (2010) Non-lethal method to obtain stomach samples from a large marine predator and the use of DNA analysis to improve dietary information. Journal of Experimental Marine Biology and Ecology, 393 (1-2). pp. 188-192.

Bonin, Mary Catherine (2010) Patterns of microhabitat specialization and the consequences of coral degradation for coral-associated reef fishes. PhD thesis, James Cook University.

Baker, Ronald, and Minello, Thomas J. (2010) Growth and mortality of juvenile white shrimp Litopenaeus setiferus in a marsh pond. Marine Ecology Progress Series, 413. pp. 95-104.

Baird, Andrew H., Kospartov, Marie C., and Purcell, Steven (2010) Reproductive synchrony in Acropora assemblages on reefs of New Caledonia. Pacific Science, 64 (3). pp. 405-412.

Bennett, S., Vergés, A., and Bellwood, D.R. (2010) Branching coral as a macroalgal refuge in a marginal coral reef system. Coral Reefs, 29 (2). pp. 471-480.

Bonaldo, Roberta Martini (2010) The ecosystem role of parrotfishes on coral reefs. PhD thesis, James Cook University.

Bannister, R.J., Battershill, C.N., and de Nys, R. (2010) Demographic variability and long-term change in a coral reef sponge along a cross-shelf gradient of the Great Barrier Reef. Marine and Freshwater Research, 61 (4). pp. 389-396.

Barnett, Adam, Stevens, John D., and Yick, Jonah L. (2010) The occurrence of the bluntnose sixgill shark Hexanchus griseus (Hexanchiformes: Hexanchidae) in a river in south-eastern Tasmania. Marine Biodiversity Records, 3. pp. 1-3.

Bondarenko, Olga, Kininmonth, Stuart, and Kingsford, Michael (2010) Deployment of wireless sensor network to study oceanography of coral reefs. International Journal on Advances in Networks and Services, 3 (1 and 2). pp. 92-102.

Bhagooli, R, Baird, Andrew, and Ralph, Peter (2010) Does the coral host protect its algal symbionts from heat and light stresses? In: Proceedings of the 11th International Coral Reef Symposium, pp. 113-117. From: 11th International Coral Reef Symposium, 07 - 11 July 2008, Fort Lauderdale, FL, USA.

Baird, A.H., Bhagooli, R., Nonaka, M., Yakovleva, I., Yamamoto, H.H., Hidaka, M., and Yamasaki, H. (2010) Environmental controls on the establishment and development of algal symbiosis in corals. In: Proceedings of the 11th International Coral Reef Symposium, pp. 108-112. From: 11th International Coral Reef Symposium, 07 - 11 July 2008, Fort Lauderdale, FL, USA.

Braccini, J. Matias, Troynikov, Vladimir S., Walker, Terence I., Mollet, Henry F., Ebert, David A., Barnett, Adam, and Kirby, Nicholas (2010) Incorporating heterogeneity into growth analyses of wild and captive broadnose sevengill sharks Notorynchus cepedianus. Aquatic Biology, 9 (2). pp. 131-138.

Barnett, A., Stevens, J.D., Frusher, S.D., and Semmens, J.M. (2010) Seasonal occurrence and population structure of the broadnose sevengill shark (Notorynchus cepedianus) in coastal habitats of south east Tasmania. Journal of Fish Biology, 77. pp. 1688-1701.

Baker, Ron, and Sheaves, Marcus (2009) Overlooked small and juvenile piscivores dominate shallow-water estuarine "refuges" in tropical Australia. Estuarine, Coastal and Shelf Science , 85 (4). pp. 618-626.

Bartlett, C.Y., Manua, C., Cinner, J., Sutton, S., Jimmy, R., South, R., Nilsson, J., and Raina, J. (2009) Comparison of outcomes of permanently closed and periodically harvested coral reef reserves. Conservation Biology, 23 (6). pp. 1475-1484.

Berumen, Michael L., and Almany, Glenn R (2009) External tagging does not affect the feeding behavior of a coral reef fish, Chaetodon vagabundus (Pisces: Chaetodontidae). Environmental Biology of Fishes, 86 (4). pp. 447-450.

Baird, Andrew H., Guest, James R., and Willis, Bette L. (2009) Systematic and biogeographical patterns in the reproductive biology of scleractinian corals. Annual Review of Ecology, Evolution, and Systematics, 40. pp. 551-571.

Bonin, Mary C., Munday, Philip L., McCormick, Mark I., Srinivasan, Maya, and Jones, Geoffrey P. (2009) Coral-dwelling fishes resistant to bleaching but not to mortality of host corals. Marine Ecology Progress Series, 394. pp. 215-222.

Bellwood, David R., and Meyer, Christopher P. (2009) Endemism and evolution in the Coral Triangle: a call for clarity. Journal of Biogeography, 36 (10). pp. 2010-2012.

Baird, Andrew H., Bhalla, Ravinder S. , Kerr, Alexander M., Pelkey, Neil W. , and Srinivas, V. (2009) Do mangroves provide an effective barrier to storm surges? Proceedings of the National Academy of Sciences of the United States of America, 106 (40). E111-E111.

Brown, D.P., Basch, L., Barshis, D., Forsman, Z., Fenner, D., and Goldberg, J. (2009) American Samoa's island of giants: massive Porites colonies at Ta'u island. Coral Reefs, 28 (3). p. 735.

Baker, Ron, and Sheaves, Marcus (2009) Refugees or ravenous predators: detecting predation on new recruits to tropical estuarine nurseries. Wetlands Ecology and Management, 17 (4). pp. 317-330.

Brierley, Andrew S., and Kingsford, Michael J. (2009) Impacts of climate change on marine organisms and ecosystems. Current Biology, 19 (14). R602-R614.

Bay, Line K., Ulstrup, Karin E., Nielsen, H. Bjorn, Jarmer, Hanne, Goffard, Nicolas, Willis, Bette L., Miller, David J., and van Oppen, Madeleine J.H. (2009) Microarray analysis reveals transcriptional plasticity in the reef building coral Acropora millepora. Molecular Ecology, 18 (14). pp. 3062-3075.

Bonaldo, Roberta Martini, and Bellwood, David R. (2009) Dynamics of parrotfish grazing scars. Marine Biology, 156 (4). pp. 771-777.

Bonin, M.C., Srinivasan, M., Almany, G.R., and Jones, G.P. (2009) Interactive effects of interspecifc competition and microhabitat on early post-settlement survival in a coral reef fish. Coral Reefs, 28 (1). pp. 265-274.

Barneche, Diego R., Floeter, S.R., Ceccarelli, D.M., Frensel, D.M.B., Dinslaken, D.F., Mario, H.F.S., and Ferreira, C.E.L. (2009) Feeding macroecology of territorial damselfishes (Perciformes: Pomacentridae). Marine Biology, 156 (3). pp. 289-299.

Baumgartner, Finn A., Motti, Cherie, de Nys, Rocky, and Paul, Nicholas A. (2009) Feeding preferences and host associations of specialist marine herbivores align with quantitative variation in seaweed secondary metabolites. Marine Ecology Progress Series, 396. pp. 1-12.

Baird, Andrew, Birrell, Chico L., Hughes, Terence, McDonald, Abbi, Nojima, Satoshi, Page, Cathie A., Pratchett, Morgan S., and Yamasaki, Hideo (2009) Latitudinal variation in reproductive synchrony in Acropora assemblages: Japan vs. Australia. Galaxea, Journal of Coral Reef Studies, 11 (2). pp. 101-108.

Baird, A.H., and Guest , J.R. (2009) Spawning synchrony in scleractinian corals: comment on Mangubhai & Harrison (2008). Marine Ecology Progress Series, 374. pp. 301-304.

Belmaker, Jonathan, Ziv, Yaron, Shashar, Nadav, and Connolly, Sean R. (2008) Regional variation in the hierarchical partitioning of diversity in coral-dwelling fishes. Ecology, 89 (10). pp. 2829-2840.

Bannister, Raymond (2008) The ecology and feeding biology of the sponge Rhopaloeides odorabile. PhD thesis, James Cook University.

Baird, Andrew, and Maynard, Jeffrey A. (2008) Coral adaptation in the face of climate change. Science, 320 (5874). pp. 315-316.

Berumen, Michael L, and Pratchett, Morgan S (2008) Trade-offs associated with dietary specialization in corallivorous butterflyfishes (Chaetodontidae: Chaetodon). Behavioral Ecology and Sociobiology, 62 (6). pp. 989-994.

Boitani, Luigi, Cowling, Richard M., Dublin, Holly T., Mace, Georgina M., Parrish, Jeff, Possingham, Hugh P., Pressey, Robert L., Rondinini, Carlo, and Wilson, Kerrie A. (2008) Change the IUCN protected area categories to reflect biodiversity outcomes. PLoS Biology, 6 (3). pp. 436-438.

Bourne, David G., Boyett, Holly V., Henderson, Meegan E., Muirhead, Andrew, and Willis, Bette L. (2008) Identification of a ciliate (Oligohymenophorea: Scuticociliatia) associated with brown band disease on corals of the Great Barrier Reef. Applied and Environmental Microbiology, 74 (3). pp. 883-888.

Berger, Uta, Rivera-Monroy, Victor H., Doyle, Thomas W., Dahdouh-Guebas, Farid, Duke, Norman C., Fontalvo-Herazo, Martha L., Hildenbrandt, Hanno, Koedam, Nico, Mehlig, Ulf, Piou, Cyril, and Twilley, Robert R. (2008) Advances and limitations of individual-based models to analyze and predict dynamics of mangrove forests: a review. Aquatic Botany, 89 (2). pp. 260-274.

Birrell, Chico L., McCook, Laurence J., Willis, Bette L., and Harrington, Lindsay (2008) Chemical effects of macroalgae on larval settlement of the broadcast spawning coral Acropora millepora. Marine Ecology Progress Series, 362. pp. 129-137.

Birrell, Chico L., McCook, Laurence J., Willis, Bette L., and Diaz-Pulido, Guillermo A. (2008) Effects of benthic algae on the replenishment of corals and the implications for the resilience of coral reefs. Oceanography and Marine Biology: an annual review, 46. pp. 25-63.

Baird, Andrew H., and Kerr, Alexander M. (2008) Landscape analysis and tsunami damage in Aceh: comment on Iverson and Prasad (2007). Landscape Ecology, 23 (1). pp. 3-5.

Bouillon, Steven, Borges, Alberto V., Castañeda-Moya, Edward, Diele, Karen, Dittmar, Thorsten, Duke, Norman C., Kristensen, Erik, Lee, Shing Y., Marchand, Cyril, Middelburg, Jack J., Rivera-Monroy, Victor H., Smith, Thomas, and Twilley, Robert R. (2008) Mangrove production and carbon sinks: a revision of global budget estimates. Global Biogeochemical Cycles, 22 (2).

Bellwood, David R., and Fulton, Christopher J. (2008) Sediment-mediated suppression of herbivory on coral reefs: decreasing resilience to rising sea levels and climate change. Limnology and Oceanography, 53 (6). pp. 2695-2701.

Baker, Ron, and Sheaves, Marcus (2007) Shallow-water refuge paradigm: conflicting evidence from tethering experiments in a tropical estuary. Marine Ecology Progress Series, 349. pp. 13-22.

Baird, Andrew H., Cumbo, Vivian R., Leggat, Bill, and Rodriguez-Lanetty, Mauricio (2007) Fidelity and flexibility in coral symbioses. Marine Ecology Progress Series, 347. pp. 307-309.

Bité, Juanita S., Campbell, Stuart J., McKenzie, Len J., and Coles, Robert G. (2007) Chlorophyll fluorescence measures of seagrasses Halophila ovalis and Zostera capricorni reveal differences in response to experimental shading. Marine Biology, 152 (2). pp. 405-414.

Burgess, Scott C., Kingsford, Michael J., and Black, Kerry P. (2007) Influence of tidal eddies and wind on the distribution of presettlement fishes around One Tree Island, Great Barrier Reef. Marine Ecology Progress Series, 341. pp. 233-242.

Baird, Andrew H., and Kerr, Alexander M. (2007) The dangerous myth of tsunami greenbelts: Response to Stone 2006. Science. p. 1.

Balston, Jacqueline Marie (2007) An examination of the impacts of climate variability and climate change on the wild barramundi (Lates calcarifer): a tropical estuarine fishery of north-eastern Queensland, Australia. PhD thesis, James Cook University.

Bondarenko, Olga, Kininmonth, Stuart, and Kingsford, Mike (2007) Coral reef sensor network deployment for collecting real time 3-D temperature data with correlation to plankton assemblages. In: Proceedings of International Conference on Sensor Technologies and Applications, pp. 204-209. From: SENSORCOMM 2007: International Conference on Sensor Technologies and Applications, 14-20 October 2007, Valencia, Spain.

Bishop, Melanie J., Kelaher, Brendan P., Alquezar, Ralph, York, Paul H., Ralph, Peter J., and Skilbeck, C. Greg (2007) Trophic cul-de-sac, Pyrazus ebeninus, limits trophic transfer through an estuarine detritus-based food web. Oikos, 116 (3). pp. 427-438.

Bondarenko, Olga, Kininmonth, Stuart, and Kingsford, Michael (2007) Underwater sensor networks, oceanography and plankton assemblages. In: Proceedings of the 2007 International Conference on Intelligent Sensors, Sensor Networks and Information Processing , pp. 657-662. From: International Conference on Intelligent Sensors, Sensor Networks and Information Processing (ISSNIP) 2007, 3-6 December 2007, Melbourne, Vic, Australia.

Berumen, Michael L., and Pratchett, Morgan S. (2006) Recovery without resilience: persistent disturbance and long-term shifts in the structure of fish and coral communities at Tiahura Reef, Moorea. Coral Reefs, 25 (4). pp. 647-653.

Baker, Ronald, and Sheaves, Marcus (2006) Visual surveys reveal high densities of large piscivores in shallow estuarine nurseries. Marine Ecology Progress Series, 323. pp. 75-82.

Bendell, Barry E. (2006) Interactions amongst invertebrates, epiphytes, and seagrasses in tropical intertidal meadows. PhD thesis, James Cook University.

Bellwood, David R, Hoey, Andrew S, Ackerman, John L, and Depczynski, Martial (2006) Coral bleaching, reef fish community phase shifts and the resilience of coral reefs. Global Change Biology, 12 (9). pp. 1587-1594.

Baird, Andrew (2006) Myth of green belts. Samudra Report, 44. pp. 14-19.

Benzie, J.A.H., and Smith-Keune, C. (2006) Microsatellite variation in Australian and Indonesian pearl oyster Pinctada maxima populations. Marine Ecology Progress Series, 314. pp. 197-211.

Baker, Ronald (2006) Piscivory and the functioning of shallow tropical estuarine nursery grounds. PhD thesis, James Cook University.

Blanco-Martin, Bernardo (2006) Dispersal of coral larvae: a modelling perspective on its determinants and implications. PhD thesis, James Cook University.

Bay, L.K., Buechler, K., Gagliano, M., and Caley, M.J. (2006) Intraspecific variation in the pelagic larval duration of tropical reef fishes. Journal of Fish Biology, 68 (4). pp. 1206-1214.

Berkes, F., Hughes, T.P., Steneck, R.S., Wilson, J.A., Bellwood, D.R., Crona, B., Folke, C., Gunderson, L.H., Leslie, H.M., Norberg, J., Nyström, M., Olsson, P., Österblom, H., Scheffer, M., and Worm, B. (2006) Globalization, roving bandits, and marine resources. Science, 311 (5767). pp. 1557-1558.

Baird, A.H., Salih, A., and Trevor-Jones, A. (2006) Fluorescence census techniques for the early detection of coral recruits. Coral Reefs, 25 (1). pp. 73-76.

Berumen, Michael Lee (2006) Influence of resource availability on lifehistory traits in coral-feeding butterflyfishes (Pisces: Chaetodontidae). PhD thesis, James Cook University.

Berumen, Michael L., and Pratchett, Morgan S. (2006) Effects of resource availability on the competitive behaviour of butterflyfishes (Chaetodontidae). In: Proceedings of the International Coral Reef Symposium, pp. 644-650. From: 10th International Coral Reef Symposium, 28 June - 2 July 2004, Okinawa Convention Cente, Okinawa, Japan.

Bishop, Melanie J., Kelaher, Brendan P., Smith, Marcus P. Lincoln, York, Paul H., and Booth, David J. (2006) Ratio-dependent response of a temperate Australian estuarine system to sustained nitrogen loading. Oecologia, 149 (4). pp. 701-708.

Boyett, Holly Virginia (2006) The ecology and microbiology of black band disease and brown band syndrome on the Great Barrier Reef. Masters (Research) thesis, James Cook University.

Baird, Andrew H., Campbell, Stuart J., Anggoro, Aji W., Ardiwijaya, Rizya L., Fadli, Nur, Herdiana, Yudi, Kartawijaya, Tasrif, Mahyiddin, Dodent, Mukminin, Ahmad, Pardede, Shinta T., Pratchett, Morgan S., Rudi, Edi, and Siregar, Achis M. (2005) Acehnese reefs in the wake of the Asian tsunami. Current Biology, 15 (21). pp. 1926-1930.

Bergenius, Mikaela A.J., McCormick, Mark I., Meekan, Mark G., and Robertson, D. Ross (2005) Environmental influences on larval duration, growth and magnitude of settlement of a coral reef fish. Marine Biology, 147 (2). pp. 291-300.

Baker, Ronald, and Sheaves, Marcus (2005) Redefining the piscivore assemblage of shallow estuarine nursery habitats. Marine Ecology Progress Series, 291. pp. 197-213.

Browne, J.G., and Kingsford, M.J. (2005) A commensal relationship between the scyphozoan medusae Catostylus mosaicus and the copepod Paramacrochiron maximum. Marine Biology, 146 (6). pp. 1157-1168.

Berumen, Michael L., Pratchett, Morgan S., and McCormick, Mark I. (2005) Within-reef differences in diet and body condition of coral-feeding butterflyfishes (Chaetodontidae). Marine Ecology Progress Series, 287. pp. 217-227.

Brodie, Jon, Fabricius, Katharina, De'ath, Glenn, and Okaji, Ken (2005) Are increased nutrient inputs responsible for more outbreaks of crown-of-thorns starfish? an appraisal of the evidence. Marine Pollution Bulletin, 51 (1-4). pp. 266-278.

Brown, G.D., Wong, H.-F., Hutchinson, N., Lee, S.-C., Chan, B.K.K., and Williams, G.A. (2005) Chemistry and biology of maculalactone A from the marine cyanobacterium Kyrtuthrix maculans. Phytochemistry reviews, 3 (3). pp. 381-400.

Bell, Alicia M., and Duke, Norman C. (2005) Effects of Photosystem II-inhibiting herbicides on mangroves: preliminary toxicology trials. Marine Pollution Bulletin, 51 (1-4). pp. 297-307.

Buechler, Karin (2005) An evaluation of geographic variation in the life history and behaviour of anemonefishes: A common-garden approach. PhD thesis, James Cook University.

Bastidas, C., Fabricius, K.E., and Willis, B.L. (2004) Demographic aspects of the soft coral Sinularia flexibilis leading to local dominance on coral reefs. Hydrobiologia, 530 (1-3). pp. 433-441.

Bellwood, David R., van Herwerden, Lynne, and Konow, Nicolai (2004) Evolution and biogeography of marine angelfishes (Pisces: Pomacanthidae). Molecular Phylogenetics and Evolution, 33 (1). pp. 140-155.

Bellwood, D.R., Hughes, T.P., Folke, C., and Nystrom, M. (2004) Confronting the coral reef crisis. Nature, 429 (6994). pp. 827-833.

Beukers-Stewart, B.D., and Jones, G.P. (2004) The influence of prey abundance on the feeding ecology of two piscivorous species of coral reef fish. Journal of Experimental Marine Biology and Ecology, 299 (2). pp. 155-184.

Baird, A.H., Babcock, R.C., and Mundy, C.P. (2003) Habitat selection by larvae influences the depth distribution of six common coral species. Marine Ecology Progress Series, 252. pp. 289-293.

Bean, K., Mapstone, B.D., Davies, C.R., Murchie, C.D., and Williams, A.J. (2003) Gonad development and evidence of protogyny in the red-throat emperor on the Great Barrier Reef. Journal of Fish Biology, 62 (2). pp. 299-310.

Birrell, Chico Liam (2003) Influences of benthic algae on coral settlement and post-settlement survival: implications for the recovery of disturbed and degraded reefs. Masters (Research) thesis, James Cook University.

Burrows, Damien Wayne (2003) The role of insect leaf herbivory on the mangroves Avicennia marina and Rhizophora stylosa. PhD thesis, James Cook University.

Bastidas, C., Benzie, J.A.H., and Fabricius, K.E. (2002) Genetic differentiation among populations of the brooding soft coral Clavularia koellikeri on the Great Barrier Reef. Coral Reefs, 21 (3). pp. 233-241.

Bean, Kyi, Jones, Geoffrey P., and Caley, M. Julian (2002) Relationships among distribution, abundance and microhabitat specialisation in a guild of coral reef triggerfish (family Balistidae). Marine Ecology - Progress Series, 233. pp. 263-272.

Baird, Andrew H,, Bellwood, David R., Connell, Joseph H., Cornell, Howard V., Hughes, Terry P., Karlson, Ronald H., and Rosen, Brian R. (2002) Coral reef biodiversity and conservation. Science, 296 (5570). pp. 1026-1028.

Bastidas, Ana Carolina (2002) Population dynamics and genetic structure of locally dominant species on coral reefs: a case study of the soft corals Sinularia flexibilis and Clavularia koellikeri. PhD thesis, James Cook University.

Bay, L.K., Jones, G.P., and McCormick, M.I. (2001) Habitat selection and aggression as determinants of spatial segregation among damselfish on a coral reef. Coral Reefs, 20 (3). pp. 289-298.

Brodie, Gilianne D., Klussmann-Kolb, Annette, and Gosliner, Terrence M. (2001) Anatomy and histology of a new species of Enotepteron (Cephalaspidea: Gastropteridae) from tropical northeastern Australia. The Veliger, 44 (4). pp. 362-369.

Bellwood, David R., and Hughes, Terry P. (2001) Regional-scale assembly rules and biodiversity of coral reefs. Science, 292 (5521). pp. 1532-1534.

Baird, Andrew Hamilton (2001) The ecology of coral larvae: settlement patterns, habitat selection and the length of the larval phase. PhD thesis, James Cook University.

Baird, A.H., Sadler, C., and Pitt, M. (2001) Synchronous spawning of Acropora in the Solomon Islands. Coral Reefs, 19 (3). p. 286.

Bastidas, C., Benzie, J.A.H., Uthicke, S., and Fabricius, K. (2001) Genetic differentiation among populations of a broadcast spawning soft coral, Sinularia flexibilis, on the Great Barrier Reef. Marine Biology, 138 (3). pp. 517-525.

Bellwood, D.R., and Wainwright, P.C. (2001) Locomotion in labrid fishes: implications for habitat use and cross-shelf biogeography on the Great Barrier Reef. Coral Reefs, 20 (2). pp. 139-150.

Bellwood, David R., and Fisher, Rebecca (2001) Relative swimming speeds in reef fish larvae. Marine Ecology-Progress Series, 211. pp. 299-303.

Brodie, Gilianne D. (2001) Some comparative histological aspects of the dendrodorid genera Doriopsilla and Dendrodoris (Opisthobranchia: Nudibranchia). Bollettino Malacologico, 37 (5-8). pp. 99-104.

Baird, Andrew H., Pratchett, Morgan S., Gibson, Deborah J., Koziumi, Noriko, and Marquis, Christopher P. (2001) Variable palatability of coral eggs to a planktivorous fish. Marine and Freshwater Research, 52 (6). pp. 865-868.

Baird, A.H., and Hughes, T.P. (2000) Competitive dominance by tabular corals: an experimental analysis of recruitment and survival of understorey assemblages. Journal of Experimental Marine Biology and Ecology, 251 (1). pp. 117-132.

Baird, A.H., and Babcock, R.C. (2000) Morphological differences among three species of newly settled pocilloporid coral recruits. Coral Reefs, 19 (2). pp. 179-183.

Bigelow, P.R., and Alexander, C.G. (2000) Diatoms on the cirri of tropical barnacles. Journal of the Marine Biological Association of the United Kingdom, 80 (4). pp. 737-738.

Bellwood, David R., and Randall, John E. (2000) Pseudojuloides severnsi, a new species of wrasse from Indonesia and Sri Lanka (Perciformes: Labridae). Journal of South Asian Natural History, 5 (1). pp. 1-5.

Bellwood, David R. (1999) Fossil pharyngognath fishes from Monte Bolca, Italy, with a description of a new pomacentrid genus and species. Studi e Ricerche sui Giacimenti Terziari di Bolca, 8. pp. 207-217.

Berkelmans, R., and Willis, B.L. (1999) Seasonal and local spatial patterns in the upper thermal limits of corals on the inshore Central Great Barrier Reef. Coral Reefs, 18 (3). pp. 219-228.

Baird, Andrew (1999) A large aggregation of Drupella rugosa following the mass bleaching of corals on the Great Barrier Reef. Reef Research, 9 (2). pp. 6-7.

Barlow, Christopher G. (1998) Aspects of the biology of juvenile barramundi Lates calcarifer (Bloch) relevant to production for recreational fisheries and farming, with a note on the proposal to introduce Nile perch Lates niloticus (L.) to Australia. PhD thesis, James Cook University.

Baird, Andrew (1998) Mass bleaching of corals on the Great Barrier Reef. Coral Reefs, 17 (4). p. 376.

Baird, A.H., and Hughes, T.P. (1997) Spatial variation in coral recruitment around Lizard Island, Australia. In: Proceedings of the International Coral Reef Symposium (2), pp. 1207-1210. From: 8th International Coral Reef Symposium, June 24-29 1996, Panama.

Beukers, Joanne S. (1996) The relative roles of recruitment and post-recruitment processes in the regulation of a coral reef Damselfish population. PhD thesis, James Cook University.

Belda, Carmelita A. (1994) Inorganic nitrogen and phosphorus nutrition in tridacnid clams and their algal symbionts. PhD thesis, James Cook University of North Queensland.

Belda, C.A., Lucas, J.S., and Yellowlees, D. (1993) Nutrient limitation in the giant clam-zooxanthellae symbiosis: effects of nutrient supplements on growth of the symbiotic partners. Marine Biology, 117 (4). pp. 655-664.

Babcock, R.C., Bull, G.D., Harrison, P.L., Heyward, A.J., Oliver, J.K., Wallace, C.C., and Willis, B.L. (1986) Synchronous spawnings of 105 scleractinian coral species on the Great Barrier Reef. Marine Biology, 90 (3). pp. 79-94.

Babcock, R.C., and Heyward, A.J. (1986) Larval development of certain gamete-spawning scleractinian corals. Coral Reefs, 5 (3). pp. 111-116.

Babcock, R.C. (1985) Growth and mortality in juvenile corals (Goniastrea, Platygyra and Acropora): the first year. In: Proceedings of the Fifth International Coral Reef Congress, pp. 355-360. From: Fifth International Coral Reef Congress, 27 May - 1 June 1985, Tahiti, French Polynesia.

Babcock, Russell C. (1984) Reproduction and distribution of two species of Goniastrea (Scleractinia) from the Great Barrier Reef Province. Coral Reefs, 2 (4). pp. 187-195.

Bull, Gordon Douglas (1977) Comparative analysis of community structure of two fringing reefs of Magnetic island (North Queensland). Masters (Coursework) thesis, James Cook University.

C

Courtney, Robert, Browning, Sally, Northfield, Tobin, and Seymour, Jamie (2016) Thermal and osmotic tolerance of 'Irukandji' polyps: Cubozoa; Carukia barnesi. PLoS ONE, 11 (7). pp. 1-14.

Carter, Alex, Bryant, Catherine, Davies, Jaclyn, and Rasheed, Michael (2016) Gladstone Healthy Harbour Partnership 2016 Report Card: ISP011: seagrass. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Coppock, Amy G., Gardiner, Naomi M., and Jones, Geoffrey P. (2016) Sniffing out the competition? Juvenile coral reef damselfishes use chemical cues to distinguish the presence of conspecific and heterospecific aggregations. Behavioural Processes, 125. pp. 43-50.

Chin, Andrew, Heupel, Michelle R., Simpfendorfer, Colin A., and Tobin, Andrew J. (2016) Population organisation in reef sharks: new variations in coastal habitat use by mobile marine predators. Marine Ecology Progress Series, 544. pp. 197-211.

Chartrand, Kathryn M., Bryant, Catherine V., Carter, Alexandra B., Ralph, Peter J., and Rasheed, Michael A. (2016) Light thresholds to prevent dredging impacts on the Great Barrier Reef seagrass, Zostera muelleri ssp. capricorni. Frontiers in Marine Science, 3.

Coppock, Amy G., Gardiner, Naomi M., and Jones, Geoffrey P. (2016) Olfactory responses of coral-reef fishes to coral degradation and crown-of-thorns (Acanthaster planci). Marine and Freshwater Research, 67 (5). pp. 605-611.

Connolly, Rod M., and Waltham, Nathan J. (2015) Spatial analysis of carbon isotopes reveals seagrass contribution to fishery food web. Ecosphere, 6 (9). pp. 1-12.

Caronni, Sarah, Bresciani, Alessia, Delaria, Maria Anna, Meloni, Federico, Navone, Augusto, Panzalis, Pieraugusto, Heimann, Kirsten, and Ceccherelli, Giulia (2015) Ecology of the benthic mucilage-forming microalga Chrysophaeum taylorii in the W Mediterranean Sea: substratum and depth preferences. Estuarine, Coastal and Shelf Science , 161. pp. 38-45.

Casey, Jordan Marie (2015) The role of territorial grazers in coral reef trophic dynamics from microbes to apex predators. PhD thesis, James Cook University.

Cipresso Pereira, Pedro Henrique, Barros, Breno, Zemoi, Rahel, and Ferreira, Beatrice Padovani (2015) Ontogenetic diet changes and food partitioning of Haemulon spp. coral reef fishes, with a review of the genus diet. Reviews in Fish Biology and Fisheries, 25 (1). pp. 245-260.

Coles, Robert G., Rasheed, Michael A., McKenzie, Len J., Grech, Alana, York, Paul H., Sheaves, Marcus, McKenna, Skye, and Bryant, Catherine (2015) The Great Barrier Reef World Heritage Area seagrasses: managing this iconic Australian ecosystem resource for the future. Estuarine, Coastal and Shelf Science , 153. A1-A12.

Currey, Leanne Margaret (2015) Movement of an exploited coral reef teleost across multiple temporal and spatial scales. PhD thesis, James Cook University.

Cinner, Joshua E., and McClanahan, Tim R. (2015) A sea change on the African coast? Preliminary social and ecological outcomes of a governance transformation in Kenyan fisheries. Global Environmental Change, 30. pp. 133-139.

Currey, Leanne M., Heupel, Michelle R., Simpfendorfer, Colin A., and Williams, Ashley J. (2015) Assessing environmental correlates of fish movement on a coral reef. Coral Reefs, 34 (4). pp. 1267-1277.

Coker, D.J., Nowicki, J.P., and Pratchett, M.S. (2015) Body condition of the coral-dwelling fish Dascyllus aruanus (Linnaeus 1758) following host colony bleaching. Environmental Biology of Fishes, 98 (2). pp. 691-695.

Cipresso Pereira, Pedro H., Munday, Philip L., and Jones, Geoffrey P. (2015) Competitive mechanisms change with ontogeny in coral-dwelling gobies. Ecology, 96 (11). pp. 3090-3101.

Casey, Jordan M, Connolly, Sean R., and Ainsworth, Tracy D. (2015) Coral transplantation triggers shift in microbiome and promotion of coral disease associated potential pathogens. Scientific Reports, 5. pp. 1-11.

Casey, J.M., Choat, J.H., and Connolly, S.R. (2015) Coupled dynamics of territorial damselfishes and juvenile corals on the reef crest. Coral Reefs, 34. pp. 1-11.

Coker, Darren J., Hoey, Andrew S., Wilson, Shaun K., Depczynski, Martial, Graham, Nicholas A.J., Hobbs, Jean-Paul A., Holmes, Thomas H., and Pratchett, Morgan S. (2015) Habitat selectivity and reliance on live corals for Indo-Pacific Hawkfishes (Family: Cirrhitidae). PLoS ONE, 10.

Clouse, Ronald M., Linchango, Gregorio V., Kerr, Alexander M., Reid, Robert W., and Janies, Daniel A. (2015) Phylotranscriptomic analysis uncovers a wealth of tissue inhibitor of metalloproteinases variants in echinoderms. Royal Society Open Science, 2. pp. 1-14.

Capper, Roxana L., Jin, Young K., Lundgren, Petra B., Peplow, Lesa M., Matz, Mikhail V., and van Oppen, Madeleine J.H. (2015) Quantitative high resolution melting: two methods to determine SNP allele frequencies from pooled samples. BMC Genetics, 16. pp. 1-13.

Carlson, John K., and Simpfendorfer, Colin A. (2015) Recovery potential of smalltooth sawfish, Pristis pectinata, in the United States determined using population viability models. Aquatic Conservation: marine and freshwater ecosystems , 25 (2). pp. 187-200.

Creighton, Colin, Boon, Paul I., Brookes, Justin D., and Sheaves, Marcus (2015) Repairing Australia's estuaries for improved fisheries production: what benefits, at what cost? Marine and Freshwater Research, 66 (6). pp. 493-507.

Cooper, Jennifer K., Spencer, Matthew, and Bruno, John F. (2015) Stochastic dynamics of a warmer Great Barrier Reef. Ecology, 96 (7). pp. 1802-1811.

Carrette, Teresa Jo (2014) Etiology of Irukandji Syndrome with particular focus on the venom ecology and life history of one medically significant carybdeid box jellyfish Alatina moseri. PhD thesis, James Cook University.

Cullen-Unsworth, Leanne C., Nordlund, Lina Mtwana, Paddock, Jessica, Baker, Susan, McKenzie, Len, and Unsworth, Richard K.F. (2014) Seagrass meadows globally as a coupled social–ecological system: implications for human wellbeing. Marine Pollution Bulletin, 83 (2). pp. 387-397.

Chong-Seng, K.M., Graham, N.A.J., and Pratchett, M.S. (2014) Bottlenecks to coral recovery in the Seychelles. Coral Reefs, 33 (2). pp. 449-461.

Connolly, Sean R., Macneil, M. Aaron, Caley, M. Julian, Knowlton, Nancy, Cripps, Ed, Hisano, Mizue, Thibaut, Loïc M., Bhattacharya, Bhaskar D., Benedetti-Cechi, Lisandro, Brainard, Russell E., Brandt, Angelika, Bulleri, Fabio, Ellingsen, Kari E., Kaiser, Stefanie, Kröncke, Ingrid, Linse, Katrin, Maggi, Elena, O'Hara, Timothy D., Plaisance, Laetititia, Poore, Gary C.B., Sarkar, Santosh K., Satpathy, Kamala, Schückel, Ulrike, Williams, Alan, and Wilson, Robin S. (2014) Commonness and rarity in the marine biosphere. Proceedings of the National Academy of Sciences of the United States of America, 111 (23). pp. 8524-8529.

Chong-Seng, K.M., Nash, K.L., Bellwood, D.R., and Graham, N.A.J. (2014) Macroalgal herbivory on recovering versus degrading coral reefs. Coral Reefs, 33 (2). pp. 409-419.

Clements, Kendall D., Angert, Esther R., Montgomery, W. Linn, and Choat, Howard (2014) Intestinal microbiota in fishes: what's known and what's not. Molecular Ecology, 23 (8). pp. 1891-1898.

Coker, Darren J., Wilson, Shaun K., and Pratchett, Morgan S. (2014) Importance of live coral habitat for reef fishes. Reviews in Fish Biology and Fisheries, 24 (1). pp. 89-126.

Cowlishaw, Melissa (2014) Determinants of home range and territory size in coral reef fishes. PhD thesis, James Cook University.

Chong-Seng, Karen Michelle (2014) Ecological structure and processes on disturbed coral reefs. PhD thesis, James Cook University.

Chung, Wen-Sung, Marshall, N. Justin, Watson, Sue-Ann, Munday, Philip L., and Nilsson, Göran E. (2014) Ocean acidification slows retinal function in a damselfish through interference with GABAA receptors. Journal of Experimental Biology, 217. pp. 323-326.

Chivers, Douglas P., McCormick, Mark I., Nilsson, Göran E., Munday, Philip L., Watson, Sue-Ann, Meekan, Mark, Mitchell, Matthew D., Corkill, Katherine C., and Ferrari, Maud C.O. (2014) Impaired learning about predators and lower survival under elevated CO2: a consequence of neurotransmitter interference. Global Change Biology, 20 (2). pp. 515-522.

Carlson, J.K., Gulak, S.J.B., Simpfendorfer, C.A., Grubbs, R.D., Romine, J.G., Burgess, G.H., and UNSPECIFIED (2014) Movement patterns and habitat use of smalltooth sawfish, Pristis pectinata, determined using pop-up satellite archival tags. Aquatic Conservation: marine and freshwater ecosystems , 24 (1). pp. 104-117.

Cooke , Steven J., Messmer, Vanessa, Tobin, Andrew J., Pratchett, Morgan S., and Clark, Timothy D. (2014) Refuge-seeking impairments mirror metabolic recovery following fisheries-related stressors in the Spanish flag snapper (Lutjanus carponotatus) on the Great Barrier Reef. Physiological and Biochemical Zoology, 87 (1). pp. 136-147.

Chivers, Douglas P., McCormick, Mark I., Mitchell, Matthew D., Ramasamy, Ryan A., and Ferrari, Maud C.O. (2014) Background level of risk determines how prey categorize predators and non-predators. Proceedings of the Royal Society of London Series B, Biological Sciences, 281 (1787). pp. 1-6.

Cole, Andrew J., and Pratchett, Morgan S. (2014) Diversity in diet and feeding behaviour of butterflyfishes: reliance on reef corals versus reef habitats. In: Pratchett, Morgan S., Berumen, Michael L., and Kapoor, B.G., (eds.) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA, pp. 107-139.

Casey, Jordan M., Ainsworth, Tracy D., Choat, J. Howard, and Connolly, Sean R. (2014) Farming behaviour of reef fishes increases the prevalence of coral disease associated microbes and black band disease. Proceedings of the Royal Society of London Series B, Biological Sciences, 281 (1788). pp. 1-8.

Ceccarelli, Daniela M., Frisch, Ashley J., Graham, Nicholas A.J., Ayling, Anthony M., and Beger, Maria (2014) Habitat partitioning and vulnerability of sharks in the Great Barrier Reef Marine Park. Reviews in Fish Biology and Fisheries, 24 (1). pp. 169-197.

Currey, Leanne M., Heupel, Michelle R., Simpfendorfer, Colin A., and Williams, Ashley J. (2014) Inferring movement patterns of a coral reef fish using oxygen and carbon isotopes in otolith carbonate. Journal of Experimental Marine Biology and Ecology, 456. pp. 18-25.

Craig, Robin Kundis, and Hughes, Terry P. (2014) Marine protected areas, marine spatial planning and the resilience of marine ecosystems. In: Garmestani, Ahjond S., and Allen, Craig R., (eds.) Social-Ecological Resilience and Law. Columbia University Press, New York, NY, USA, pp. 98-141.

Claydon, J.A.B., McCormick, M.I., and Jones, G.P. (2014) Multispecies spawning sites for fishes on a low-latitude coral reef: spatial and temporal patterns. Journal of Fish Biology, 84 (4). pp. 1136-1163.

Caballes, Ciemon F., and Pratchett, Morgan S. (2014) Reproductive biology and early life history of the crown-of-thorns starfish. In: Whitmore, Eric, (ed.) Echinoderms: ecology, habitats and reproductive biology. Marine Biology . Nova Science Publishers, New York, NY, USA, pp. 101-146.

Currey, Leanne M., Heupel, Michelle R., Simpfendorfer, Colin A., and Williams, Ashley J. (2014) Sedentary or mobile? Variability in space and depth use of an exploited coral reef fish. Marine Biology, 161 (9). pp. 2155-2166.

Chivers, Douglas P., Ramasamy, Ryan A., McCormick, Mark I., Watson, Sue-Ann, Siebeck, Ulrike E., and Ferrari, Maud C.O. (2014) Temporal constraints on predation risk assessment in a changing world. Science of the Total Environment, 500-501. pp. 332-338.

Coles, Rob, Short, Fred, Miguel, Fortes, and Kuo, John (2014) Twenty years of seagrass networking and advancing seagrass science: the International Seagrass Biology Workshop Series. Pacific Conservation Biology, 20 (1). pp. 8-16.

Carter, Alex, Taylor, Helen, McKenna, Skye, York, Paul, and Rasheed, Michael (2014) The effect of climate on seagass in the Torres Strait: 2011-2014. Report. TropWATER, Cairns, QLD, Australia.

Cole, A.J., Lawton, R.J., Pisapia, C., and Pratchett, M.S. (2014) The effects of coral bleaching on settlement preferences and growth of juvenile butterflyfishes. Marine Environmental Research, 98. pp. 106-110.

Cipresso Pereira, Pedro Henrique Cipresso, Moraes, Rodrigo Lima, dos Santos, Marcus Vinicius Bezerra, Lippi, Daniel Lino, Feitosa, João Lucas Leão, and UNSPECIFIED (2014) The influence of multiple factors upon reef fish abundance and species richness in a tropical coral complex. Ichthyological Research, 61 (4). pp. 375-384.

Curley, B.G., Glasby, T.M., Curley, A.J., Creese, R.G., and Kingsford, M.J. (2013) Enhanced numbers of two temperate reef fishes in a small, partial-take marine protected area related to spearfisher exclusion. Biological Conservation, 167. pp. 435-445.

Chartrand, K., McCormack, C., Thomas, R., Rasheed, M., and Ralph, P. (2013) Environmental tolerances and drivers of deepwater seagrass change: implications and tools for coastal development management. In: 22nd Biennial Conference of the Coastal and Estuarine Research Federation: abstract book, p. 39. From: CERF2013 Toward Resilient Coasts and Estuaries, Science for Sustainable Solutions, 3-7 November 2013, San Diego, California.

Cumbo, Vivian R., Baird, Andrew H., Moore, Robert B., Negri, Andrew P., Neilan, Brett A., Salih, Anya, van Oppen, Madeleine J.H., Wang, Yan, and Marquis, Christopher P. (2013) Chromera velia is endosymbiotic in larvae of the reef corals Acropora digitifera and A. tenuis. Protist, 164 (2). pp. 237-244.

Cinner, Joshua E., Huchery, Cindy, Darling, Emily, Humphries, Austin T., Graham, Nicholas A.J., Hicks, Christina, Marshall, Nadine, and McClanahan, Tim R. (2013) Evaluating social and ecological vulnerability of coral reef fisheries to climate change. PLoS ONE, 8 (9). pp. 1-12.

Cowman, Peter F., and Bellwood, David R. (2013) Vicariance across major marine biogeographic barriers: temporal concordance and the relative intensity of hard versus soft barriers. Proceedings of the Royal Society of London Series B, Biological Sciences, 280 (1768). pp. 1-8.

Courtney, Robert, and Seymour, Jamie (2013) Seasonality in polyps of a tropical cubozoan: a latina nr mordens. PLoS ONE, 8 (7). pp. 1-6.

Cinner, Joshua E., Graham, Nicholas A.J., Huchery, Cindy, and Macneil, M. Aaron (2013) Global effects of local human population density and distance to markets on the condition of coral reef fisheries. Conservation Biology, 27 (3). pp. 453-458.

Coppock, Amy G., Gardiner, Naomi M., and Jones, Geoffrey P. (2013) Olfactory discrimination in juvenile coral reef fishes: response to conspecifics and corals. Journal of Experimental Marine Biology and Ecology, 443. pp. 21-26.

Currey, L.M., Williams, A.J., Mapstone, B.D., Davies, C.R., Carlos, G., Welch, D.J., Simpfendorfer, C.A., Ballagh, A.C., Penny, A.L., Grandecourt, E.M., Mapleston, A., Wiebkin, A.S., and Bean, K. (2013) Comparative biology of tropical Lethrinus species (Emperors): challenges for multi-species management. Journal of Fish Biology, 82 (3). pp. 764-788.

Collin, Sean, Costello, John H., Katija, Kakani, Seymour, Jamie, and Kiefer, Kristen (2013) Propulsion in cubomedusae: mechanisms and utility. PLoS ONE, 8 (2). pp. 1-10.

Chua, Chia-Miin, Leggat, William, Moya, Aurelie, and Baird, Andrew (2013) Temperature affects the early life history stages of corals more than near future ocean acidification. Marine Ecology Progress Series, 475. pp. 85-92.

Cohen, Yossi, Pollock, F. Joseph, Rosenberg, Eugene, and Bourne, David G. (2013) Phage therapy treatment of the coral pathogen Vibrio coralliilyticus. MicrobiologyOpen, 2 (1). pp. 64-74.

Cowman, Peter F., and Bellwood, David R. (2013) The historical biogeography of coral reef fishes: global patterns of origination and dispersal. Journal of Biogeography, 40 (2). pp. 209-224.

Chaves, L.T.C., Pereira, P.H.C., and Feitosa, J.L.L. (2013) Coral reef fish association with macroalgal beds on a tropical reef system in North-eastern Brazil. Marine and Freshwater Research, 64 (12). pp. 1101-1111.

Clark, Kathryn E., Capper, Angela, Della Togna, Gina, Paul, Valerie J., Romero, Luz I., Johns, Timothy, Cubilla-Rios, Luis, and Capson, Todd L. (2013) Ecology- and bioassay-guided drug discovery for treatments of tropical parasitic disease: 5α,8α-epidioxycholest-6-en-3β-ol isolated from the mollusk Dolabrifera dolabrifera shows significant activity against Leishmania donovani. Natural Product Communications, 8 (11). pp. 1537-1540.

Chin, Andrew (2013) Hunting porcupines... Sport Diving Magazine, 160. pp. 48-49.

Ceh, Janja, Kilburn, Matt R., Cliff, John B., Raina, Jean-Baptiste, van Keulen, Mike, and Bourne, David G. (2013) Nutrient cycling in early coral life stages: Pocillopora damicornis larvae provide their algal symbiont (Symbiodinium) with nitrogen acquired from bacterial associates. Ecology and Evolution, 3 (8). pp. 2393-2400.

Chin, A., Heupel, M.R., Simpfendorfer, C.A., and Tobin, A.J. (2013) Ontogenetic movements of juvenile blacktip reef sharks: evidence of dispersal and connectivity between coastal habitats and coral reefs. Aquatic Conservation, 23 (3). pp. 468-474.

Chin, A., Tobin, A.J., Heupel, M.R., and Simpfendorfer, C.A. (2013) Population structure and residency patterns of the blacktip reef shark Carcharhinus melanopterus in turbid coastal environments. Journal of Fish Biology, 82 (4). pp. 1192-1210.

Cariglia, Nicoletta, Wilson, Shaun K., Graham, Nicholas A.J., Fisher, Rebecca, Robinson, Jan, Aumeeruddy, Riaz, Quatre, Rodney, and Polunin, Nicholas V.C. (2013) Sea cucumbers in the Seychelles: effects of marine protected areas on high-value species. Aquatic Conservation, 23 (3). pp. 418-428.

Chan, Neil C.S., and Connolly, Sean R. (2013) Sensitivity of coral calcification to ocean acidification: a meta-analysis. Global Change Biology, 19 (1). pp. 282-290.

Coker, Darren J., Walker, Stefan P.W., Munday, Philip L., and Pratchett, Morgan S. (2013) Social group entry rules may limit population resilience to patchy habitat disturbance. Marine Ecology Progress Series, 493. pp. 237-242.

Chang, Mei-Yu, Geffen, Audrey J., Kosler, Jan, Dundas, Siv Hjorth, FishPop Trace Consortium, , and Maes, Gregory E. (2012) The effect of ablation pattern on LA-ICPMS analysis of otolith element composition in hake, Merluccius merluccius. Environmental Biology of Fishes, 95 (4). pp. 509-520.

Chartrand, Katie, McCormack, Catherine, and Rasheed, Michael (2012) Implementing a light-based seagrass management approach for a large scale dredging program. In: Proceedings of the 10th International Seagrass Biology Workshop, p. 24. From: 10th International Seagrass Biology Workshop, 25 - 30 November 2012, Armação dos Búzios, Brazil.

Campbell, Stuart, Cinner, Joshua, Ardiwijaya, Rizya, Pardede, Shinta, Kartawijaya, Tasrif, Mukminin, Ahmad, Herdiana, Yudi, Hoey, Andrew S., Pratchett, Morgan, and Baird, Andrew (2012) Avoiding conflicts and protecting coral reefs: Customary management benefits marine habitats and fish biomass. Oryx, 46 (4). 486-494 .

Cetina Heredia, Paulina (2012) Modelling physical and biological drivers of larval retention in reef systems. PhD thesis, James Cook University.

Chong-Seng, Karen M., Mannering, Thomas D., Pratchett, Morgan S., Bellwood, David R., and Graham, Nicholas A.J. (2012) The influence of coral reef benthic condition on associated fish assemblages. PLoS ONE, 7 (8). pp. 1-10.

Camus, Thomas (2012) The improvement of copepods intensive culture protocols as live feeds for aquaculture hatcheries. PhD thesis, James Cook University.

Cole, Andrew J., Lawton, Rebecca J., Wilson, Shaun K., and Pratchett, Morgan S. (2012) Consumption of tabular acroporid corals by reef fishes: a comparison with plant–herbivore interactions. Functional Ecology, 26 (2). pp. 307-316.

Coker, Darren J., Pratchett, Morgan S., and Munday, Philip L. (2012) Influence of coral bleaching, coral mortality and conspecific aggression on movement and distribution of coral-dwelling fish. Journal of Experimental Marine Biology and Ecology, 414-415. pp. 62-68.

Claydon, J.A.B., McCormick, M.I., and Jones, G.P. (2012) Patterns of migration between feeding and spawning sites in a coral reef surgeonfish. Coral Reefs, 31 (1). pp. 77-87.

Chua, Chia-Miin (2012) The effects of ocean acidification and warming on the early life history stages of corals. PhD thesis, James Cook University.

Ceh, Janja, Raina, Jean-baptiste, Soo, Rochelle M., van Keulen, Mike, and Bourne, David G. (2012) Coral-bacterial communities before and after a coral mass spawning event on Ningaloo Reef. PLoS One, 7 (5). pp. 1-7.

Carranza, Alvar, Munoz Recio, Araceli, Kitahara, Marcelo, Scarabino, Fabrizio, Ortega, Leonardo, Lopez, Guzman, Franco-Fraguas, Paula, De Mello, Camila, Acosta, Juan, and Fontan, Antia (2012) Deep-water coral reefs from the Uruguayan outer shelf and slope. Marine Biodiversity, 42 (3). pp. 411-414.

Chua, Chia-Miin, Schupp, Peter, Leggat, William, and Baird, Andrew (2012) Effects of ocean acidification on metamorphosis: brooding and spawning larvae. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Carl, C., Poole, A.J., Sexton, B.A., Glenn, F.L., Vucko, M.J., Williams, M.R., Whalan, S., and de Nys, R. (2012) Enhancing the settlement and attachment strength of pediveligers of Mytilus galloprovincialis by changing surface wettability and microtopography. Biofouling, 28 (2). pp. 175-186.

Coles, Robert, Grech, Alana, Rasheed, Michael, and McKenzie, Len (2012) Evaluating risk to seagrasses in the Tropical Indo-Pacific Region. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Connolly, S.R., Lopez-Yglesias, M.A., and Anthony, K.R.N. (2012) Food availability promotes rapid recovery from thermal stress in a scleractinian coral. Coral Reefs, 31 (4). pp. 951-960.

Coker, D.J., Graham, N.A.J., and Pratchett, M.S. (2012) Interactive effects of live coral and structural complexity on the recruitment of reef fishes. Coral Reefs, 31 (4). pp. 919-927.

Caballes, C.F., Schupp, P.J., Pratchett, M.S., and Rivera Posada, J.A. (2012) Interspecific transmission and recovery of TCBS-induced disease between Acanthaster planci and Linckia guildingi. Diseases of Aquatic Organisms, 100 (3). pp. 263-267.

Carpenter, Stephen R., Folk, Carl, Norstrom, Albert, Olsson, Olof, Schultz, Lisen, Agarwal, Bina, Balvanera, Patricia, Campbell, Bruce, Carlos Castilla, Juan, Cramer, Wolfgang, DeFries, Ruth, Eyzaguirre, Pablo, Hughes, Terry P., Polasky, Stephen, Sanusi, Zainal, Scholes, Robert, and Spierenburg, Marja (2012) Program on ecosystem change and society: an international research strategy for integrated social-ecological systems. Current Opinion in Environmental Sustainability, 4 (1). pp. 134-138.

Ceccarelli, D.M., and Williamson, D.H. (2012) Sharks that eat sharks: opportunistic predation by wobbegongs. Coral Reefs, 31 (2). p. 471.

Campbell, Stuart J., Hoey, Andrew S., Maynard, Jeffrey, Kartawijaya, Tasrif, Cinner, Joshua, Graham, Nicholas A.J., and Baird, Andrew (2012) Weak compliance undermines the success of no-take zones in a large government-controlled marine protected area. PLoS ONE, 7 (11). pp. 1-12.

Cowman, P.F., and Bellwood, D.R. (2011) Coral reefs as drivers of cladogenesis: expanding coral reefs, cryptic extinction events, and the development of biodiversity hotspots. Journal of Evolutionary Biology, 24 (12). pp. 2543-2562.

Clague, Gillian E., Cheney, Karen L., Goldizen, Anne W., McCormick, Mark I., Waldie, Peter A., and Grutter, Alexandra S. (2011) Long-term cleaner fish presence affects growth of a coral reef fish. Biology Letters, 7 (6). pp. 863-865.

Ceccarelli, D.M., Richards, Z.T., Pratchett, M.S., and Cvitanovic, C. (2011) Rapid increase in coral cover on an isolated coral reef, the Ashmore Reef National Nature Reserve, north-western Australia. Marine and Freshwater Research, 62 (10). pp. 1214-1220.

Cetina-Heredia, Paulina, and Connolly, Sean R. (2011) A simple approximation for larval retention around reefs. Coral Reefs, 30 (3). pp. 593-605.

Causse, Romain, Ozouf-Costaz, Catherine, Koubbi, Philippe, Lamy, Dominique, Eléaume, Marc, Dettaï, Agnès, Duhamel, Guy, Busson, Frédéric, Pruvost, Patrice, Post, Alexandra, Beaman, Robin J., and Riddle, Martin J. (2011) Demersal ichthyofaunal shelf communities from the Dumont d’Urville Sea (East Antarctica). Polar Science, 5 (2). pp. 272-285.

Cripps, Ingrid, Munday, Philip L., and McCormick, Mark I. (2011) Ocean acidification affects prey detection by a predatory reef fish. PLoS One, 6 (7). pp. 1-7.

Ceccarelli, Daniela, Beger, Maria, Kospartov, Marie, Richards, Zoe, and Birrell, Chico (2011) Population trends of remote invertebrate resources in a marine reserve: trochus and holothurians at Ashmore Reef. Pacific Conservation Biology, 17 (2). pp. 132-140.

Cumbo, Vivian Ruth (2011) The establishment and development of symbiosis in coral larvae. PhD thesis, James Cook University.

Ceccarelli, D.M., Jones, G.P, and McCook, L.J. (2011) Interactions between herbivorous fish guilds and their influence on algal succession on a coastal coral reef. Journal of Experimental Marine Biology and Ecology, 399 (1). pp. 60-67.

Cavalcante, Geórgenes H. , Kjerfve, Björn, Feary, David A., Bauman, Andrew G., and Usseglio, Paolo (2011) Water Currents and Water Budget in a Coastal Megastructure, Palm Jumeirah Lagoon, Dubai, UAE. Journal of Coastal Research, 27 (2). pp. 384-393.

Chen, Kao-Song, Hsieh, Hernyi Justin, Keshavmurthy, Shashank, Leung, Julia Ka Lai, Lien, I-Ting, Nakano, Yoshikatsu, Plathong, Sakanan, Huang, Hui, and Chen, Chaolun Allen (2011) Latitudinal gradient of morphological variations in zebra coral Oulastrea crispata (Scleractinia: Faviidae) in the West Pacific. Zoological Studies, 50 (1). pp. 43-52.

Cappo, Mike, Stowar, Marcus, Syms, Craig, Johansson, Charlotte, and Cooper, Tim (2011) Fish-habitat associations in the region offshore from James price point - a rapid assessment using baited remote underwater video stations (BRUVS). Journal of the Royal Society of Western Australia, 94 (2). pp. 303-321.

Chong-Seng, K.M., Cole, A.J., Pratchett, M.S., and Willis, B.L. (2011) Selective feeding by coral reef fishes on coral lesions associated with brown band and black band disease. Coral Reefs, 30 (2). pp. 473-481.

Clode, P.L., Lema, K., Saunders, M., and Weiner, S. (2011) Skeletal mineralogy of newly settling Acropora millepora (Scleractinia) coral recruits. Coral Reefs, 30 (1). pp. 1-8.

Cinner, J.E. (2011) Social-ecological traps in reef fisheries. Global Environmental Change, 21 (3). pp. 835-839.

Cinner, Joshua E., and David, Gilbert (2011) The human dimensions of coastal and marine ecosystems in the Western Indian Ocean. Coastal Management, 39 (4). pp. 351-357.

Camus, Thomas, and Zeng, Chaoshu (2010) Roles of microalgae on total egg production over female lifespan and egg incubation time, naupliar and copepodite survival, sex ratio and female life expectancy of the copepod Bestiolina similis. Aquaculture Research, 41 (11). pp. 1717-1726.

Campbell, Hamish A., Watts, Matthew E., Sullivan, Scott, Read, Mark A., Choukroun, Severine, Irwin, Steve R., and Franklin, Craig E. (2010) Estuarine crocodiles ride surface currents to facilitate long-distance travel. Journal of Animal Ecology, 79 (5). pp. 955-964.

Cole, A.J, Pratchett, M.S., and Jones, G.P. (2010) Corallivory in tubelip wrasses: diet, feeding and trophic importance. Journal of Fish Biology, 76 (4). pp. 818-835.

Cappo, Mike (2010) Development of a baited video technique and spatial models to explain patterns of fish biodiversity in inter-reef waters. PhD thesis, James Cook University.

Cuveliers, E.L., Geffen, A.J., Guelinckx, J., Raeymaekers, J.A.M., Skadal, J., Volckaert, F.A.M., and Maes, G.E. (2010) Microchemical variation in juvenile Solea solea otoliths as a powerful tool for studying connectivity in the North Sea. Marine Ecology Progress Series, 401. pp. 211-220.

Chick, Rowan C. (2010) Stock enhancement of local populations of blacklip abalone (Haliotis rubra Leach) in New South Wales, Australia. PhD thesis, James Cook University.

Cvitanovic, C., and Hoey, A.S. (2010) Benthic community composition influences within-habitat variation in macroalgal browsing on the Great Barrier Reef. Marine and Freshwater Research, 61 (9). pp. 999-1005.

Connolly, Sean R., and Baird, Andrew H. (2010) Estimating dispersal potential for marine larvae: dynamic models applied to scleractinian corals. Ecology, 91 (12). pp. 3572-3583.

Cole, Andrew J, Chong-Seng, Karen, Pratchett, Morgan S., and Jones, Geoffrey P. (2009) Coral-feeding fishes slow progression of black-band disease. Coral Reefs, 28 (4). p. 965.

Coker, Darren J., Pratchett, Morgan S., and Munday, Philip L. (2009) Coral bleaching and habitat degradation increase susceptibility to predation for coral-dwelling fishes. Behavioral Ecology, 20 (6). pp. 1204-1210.

Cinner, Joshua, Fuentes, Mariana M.P.B., and Randriamahazo, Herilala (2009) Exploring social resilience in Madagascar’s marine protected areas. Ecology and Society, 14 (1). .

Cinner, Joshua E., McClanahan, Tim R., Graham, Nicholas A.J., Pratchett, Morgan S., Wilson, Shaun K., and Raina, Jean-Baptiste (2009) Gear-based fisheries management as a potential adaptive response to climate change and coral mortality. Journal of Applied Ecology, 46 (3). pp. 724-732.

Cantin, N.E., van Oppen, M.J.H., Willis, B.L., Mieog, J.C., and Negri, A.P. (2009) Juvenile corals can acquire more carbon from high-performance algal symbionts. Coral Reefs, 28 (2). pp. 405-414.

Cole, A.J., Pratchett, M.S., and Jones, G.P. (2009) Effects of coral bleaching on the feeding response of two species of coral-feeding fish. Journal of Experimental Marine Biology and Ecology, 373. pp. 11-15.

Cole, A.J., Pratchett, M.S., and Jones, G.P. (2009) Coral-feeding wrasse scars massive Porites colonies. Coral Reefs, 28 (1). p. 207.

Cvitanovic, C., and Bellwood, D.R. (2009) Local variation in herbivore feeding activity on an inshore reef of the Great Barrier Reef. Coral Reefs, 28 (1). pp. 127-133.

Cinner, Joshua E., McClanahan, Timothy R., Daw, Tim M., Graham, Nicholas A.J., Maina, Joseph, Wilson, Shaun K., and Hughes, Terence P. (2009) Linking social and ecological systems to sustain coral reef fisheries. Current Biology, 19 (3). pp. 206-212.

Coker, D.J., Pratchett, M.S., and Munday, P.L. (2009) Does body colouration influence predation risk of coral dwelling reef fish in bleached landscapes? In: Proceedings of the 11th Coral Reef Symposium, pp. 1281-1285. From: 11th International Coral Reef Symposium, 7-11 July 2008, Fort Lauderdale, Florida, USA.

Connolly, Sean R. (2009) Macroecological theory and the analysis of species richness gradients. In: Witman, Jon D., and Roy, Kaustuv, (eds.) Marine Macroecology. University Of Chicago , Chicago, USA, pp. 279-309.

Curley, Belinda G., and Gillings, Michael R. (2009) Population connectivity in the temperate damselfish Parma microlepis: analyses of genetic structure across multiple spatial scales. Marine Biology, 156 (3). pp. 381-393.

Connolly, Sean R, Dornelas, Maria, Bellwood, David R., and Hughes, Terence P (2009) Testing species abundance models: a new bootstrap approach applied to Indo-Pacific coral reefs. Ecology, 90 (11). pp. 3138-3149.

Carter, Alexandra, Williams, Ashley, Russ, Garry, and Tobin, Andrew (2009) The effects of no-take zoning, region and year on reproductive output of the common coral trout, Plectropomus leopardus. In: Proceedings of the International Marine Conservation Congress Annual Convention. From: International Marine Conservation Congress Annual Convention, 17-24 May 2009, Washington, DC, USA.

Cheal, Alistair J., Wilson, Shaun K., Emslie, Michael J., Dolman, Andrew M., and Sweatman, Hugh (2008) Responses of reef fish communities to coral declines on the Great Barrier Reef. Marine Ecology Progress Series, 372. pp. 211-223.

Collins, Angela B., Heupel, Michelle R., and Simpfendorfer, Colin A. (2008) Spatial distribution and long-term movement patterns of cownose rays Rhinoptera bonasus within an estuarine river. Estuaries and Coasts, 31 (6). pp. 1174-1183.

Carlson, John K., Heupel, Michelle R., Bethea, Dana M., and Hollensead, Lisa D. (2008) Coastal habitat use and residency of juvenile Atlantic sharpnose sharks (Rhizoprionodon terraenovae). Estuaries and Coasts, 31 (5). pp. 931-940.

Cole, Andrew J., Pratchett, Morgan S., and Jones, Geoffrey P. (2008) Diversity and functional importance of coral-feeding fishes on tropical coral reefs. Fish and Fisheries, 9. pp. 286-307.

Camus, Thomas, and Zeng, Chaoshu (2008) Effects of photoperiod on egg production and hatching success, naupliar and copepodite development, adult sex ratio and life expectancy of the tropical calanoid copepod Acartia sinjiensis. Aquaculture, 280 (1-4). pp. 220-226.

Cannicci, Stefano, Burrows, Damien, Fratini, Sara, Smith III, Thomas J., Offenberg, Joachim, and Dahdouh-Guebas, Farid (2008) Faunal impact on vegetation structure and ecosystem function in mangrove forests: a review. Aquatic Botany, 89 (2). pp. 189-200.

Cooper, Timothy F. (2008) Coral bioindicators of environmental conditions on coastal coral reefs. PhD thesis, James Cook University.

Cantin, Neal (2008) Chronic effects of herbicide exposure on photosynthesis, symbiosis and reproduction of reef building corals. PhD thesis, James Cook University.

Cornell, H.V., Karlson, R.H., and Hughes, T.P. (2008) Local–regional species richness relationships are linear at very small to large scales in west-central Pacific corals. Coral Reefs, 27 (1). pp. 145-151.

Chin, Andrew, Sweatman, Hugh, Forbes, Susan, Perks, Helen, Walker, Ryan, Jones, Geoff, Williamson, David, Evans, Richard, Hartley, Fraser, Armstrong, Shannon, Malcolm, Hamish, and Edgar, Graham (2008) 2008 Status of the coral reefs in Australia and Papua New Guinea. In: Wilkinson, Clive, (ed.) Status of Coral Reefs of the World: 2008. Global Coral Reef Monitoring Network, Townsville, QLD, Australia, pp. 159-176.

Congdon, B.C. (2008) Seabirds. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 359-368.

Choat, J.H., and Russell, B.C. (2008) The fish assemblages of the Great Barrier Reef: their diversity and origin. In: Hutchings, Pat , Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 327-342.

Ceccarelli, D.M. (2007) Modification of benthic communities by territorial damselfish: a multi-species comparison. Coral Reefs, 26 (4). pp. 853-866.

Cappo, Mike, De'ath, Glenn, and Speare, Peter (2007) Inter-reef vertebrate communities of the Great Barrier Reef Marine Park determined by baited remote underwater video stations. Marine Ecology Progress Series, 350. pp. 209-221.

Carruthers, T.J.B., Dennison, W.C., Kendrick, G.A., Waycott, M., Walker, D.I., and Cambridge, M.L. (2007) Seagrasses of south-west Australia: A conceptual synthesis of the world's most diverse and extensive seagrass meadows. Journal of Experimental Marine Biology and Ecology, 350 (1-2). pp. 21-45.

Curley, Belinda G. (2007) Estimating dispersal and population connectivity for temperate reef fishes at multiple spatial scales. PhD thesis, James Cook University.

Collins, A.B., Heupel, M.R., and Motta, P.J. (2007) Residence and movement patterns of cownose rays Rhinoptera bonasus within a south-west Florida estuary. Journal of Fish Biology, 71 (4). pp. 1159-1178.

Cooper, Timothy F., Uthicke, Sven, Humphrey, Craig, and Fabricius, Katharina E. (2007) Gradients in water column nutrients, sediment parameters, irradiance and coral reef development in the Whitsunday Region, central Great Barrier Reef. Estuarine, Coastal and Shelf Science, 74 (3). pp. 458-470.

Campbell, Stuart J., Pratchett, Morgan S., Anggoro, Aji W., Ardiwijaya, Rizya L, Fadli, Nur, Herdiana, Yudi, Kartawijaya, Tasrif, Mahyiddin, Dodent, Mukminin, Ahmad, Pardede, Shinta T., Rudi, Edi, Siregar, Achis M., and Baird, Andrew H. (2007) Disturbance to coral reefs in Aceh, Northern Sumatra: impacts of the Sumatra-Andaman tsunami and pre-tsunami degradation. Atoll Research Bulletin, 544. pp. 55-78.

Campbell, Stuart, McKenzie, Len J., Kerville, Simon P., and Bite, Juanita S. (2007) Patterns in tropical seagrass photosynthesis in relation to light, depth and habitat. Estuarine, Coastal and Shelf Science, 73 (3-4). pp. 551-562.

Cornell, Howard V., Karlson, Ronald H., and Hughes, Terence P. (2007) Scale-dependent variation in coral community similarity across sites, islands, and island groups. Ecology, 88 (7). pp. 1707-1715.

Choat, J.H., Davies, C.R., Ackerman, J.L., and Mapstone, B.D. (2006) Age structure and growth in a large teleost, Cheilinus undulatus, with a review of size distribution in labrid fishes. Marine Ecology Progress Series, 318. pp. 237-246.

Ceccarelli, Daniela M., Jones, Geoffrey P., and McCook, Laurence J. (2005) Effects of territorial damselfish on an algal-dominated coastal coral reef. Coral Reefs, 24 (4). pp. 606-620.

Congdon, Bradley C., Krockenberger, Andrew K., and Smithers, Brian V. (2005) Dual-foraging and coordinated provisioning in a tropical Procellariiform, the wedge-tailed shearwater. Marine Ecology Progress Series, 301. pp. 293-301.

Cinner, Joshua E., Marnane, Michael J., McClanahan, Timothy R., Clark, Tracy H., and Ben, John (2005) Trade, tenure, and tradition: influence of sociocultural factors on resource use in Melanesia. Conservation Biology, 19 (5). pp. 1469-1477.

Ceccarelli, Daniela M., Jones, Geoffrey P., and McCook, Laurence J. (2005) Foragers versus farmers: contrasting effects of two behavioural groups of herbivores on coral reefs. Oecologia, 145 (3). pp. 445-453.

Crossman, David J., Choat, J. Howard, and Clements, Kendall D. (2005) Nutritional ecology of nominally herbivorous fishes on coral reefs. Marine Ecology Progress Series, 296. pp. 129-142.

Clouse, Ron, Janies, Daniel, and Kerr, Alexander M. (2005) Resurrection of Bohadschia bivittata from B. marmorata (Holothuroidea: Holothuriidae) based on behavioral, morphological, and mitochondrial DNA evidence. Zoology, 108 (1). pp. 27-39.

Claydon, John Alexander Brightman (2005) The structure and dynamics of spawning aggregations of coral reef fish. PhD thesis, James Cook University.

Connell, Joseph H., Hughes, Terence P., Wallace, Carden C., Tanner, Jason E., Harms, Kyle E., and Kerr, Alexander M. (2004) A long-term study of competition and diversity of corals. Ecological Monographs, 74 (2). pp. 179-210.

Cruz-Motta, J.J., and Collins, J. (2004) Impacts of dredged material disposal on a tropical soft-bottom benthic assemblage. Marine Pollution Bulletin, 48 (3). pp. 270-280.

Ceccarelli, Daniela Monica (2004) Herbivorous fishes as determinants of the structure of coral reef communities: farmers, foragers and their interactions. PhD thesis, James Cook University.

Claydon, John (2004) Spawning aggregations of coral reef fishes: characteristics, hypotheses, threats and management. Oceanography and Marine Biology: an annual review, 42. pp. 265-301.

Clarke, Cathryn Lynne (2004) The ecological role of sea hares (Opisthobranchia: Anaspidea) within tropical intertidal habitats. Masters (Research) thesis, James Cook University.

Connolly, Sean R., and Muko, Soyoka (2003) Space preemption, size-dependent competition, and the coexistence of clonal growth forms. Ecology, 84 (11). pp. 2979-2988.

Clements, Kendall D., Gray, Russell D., and Choat, J.Howard (2003) Rapid evolutionary divergences in reef fishes of the family Acanthuridae (Perciformes: Teleostei). Molecular Phylogenetics and Evolution, 26 (2). pp. 190-201.

Cabral, Henrique N., Marques, Joana F., Rego, Ana Luisa, Catarino, Ana Isabel, Figueiredo, Joana, and Garcia, Joana (2003) Genetic and morphological variation of Synaptura lusitanica Capello, 1868, along the Portuguese coast. Journal of Sea Research, 50 (2-3). pp. 167-175.

Chilvers, B. Louise, Corkeron, Peter J., and Puotinen, Marji L. (2003) Influence of trawling on the behaviour and spatial distribution of Indo-Pacific bottlenose dolphins (Tursiops aduncus) in Moreton Bay, Australia. Canadian Journal of Zoology, 81 (12). pp. 1947-1955.

Choat, J.H., Robertson, D.R., Ackerman, J.L., and Posada, J.M. (2003) An age-based demographic analysis of the Caribbean stoplight parrotfish Sparisoma viride. Marine Ecology Progress Series, 246. pp. 265-277.

Carrette, T., Alderslade, P., and Seymour, J. (2002) Nematocyst ratio and prey in two Australian cubomedusans, Chironex fleckeri and Chiropsalmus sp. Toxicon, 40 (11). pp. 1547-1551.

Connolly, Sean, Menge, Bruce A., and Roughgarden, Joan (2001) A latitudinal gradient in recruitment of intertidal invertebrates in the northeast Pacific Ocean. Ecology, 82 (7). pp. 1799-1813.

Caley, M. Julian, Schwarzkopf, Lin, and Shine, Richard (2001) Does total reproductive effort evolve independently of offspring size? Evolution: international journal of organic evolution, 55 (6). pp. 1245-1248.

Crossman, David J., Choat, J. Howard, Clements, Kendall D., Hardy, Tom, and McConochie, Jason (2001) Detritus as food for grazing fishes on coral reefs. Limnology and Oceanography, 46 (7). pp. 1596-1605.

Chang, Marshall, and Southgate, Paul C. (2001) Effects of varying dietry fatty acid composition on growth and survival of seahorse, Hippocampus sp. juveniles. Aquarium Sciences and Conservation, 3 (1-3). pp. 205-214.

Caley, M. Julian, Buckley, Kathryn A., and Jones, Geoffrey P. (2001) Separating ecological effects of habitat fragmentation, degradation, and loss on coral commensals. Ecology, 82 (12). pp. 3435-3448.

Ceccarelli, Daniela M., Jones, Geoffrey P., and McCook, Laurence J. (2001) Territorial damselfishes as determinants of the structure of benthic communities on coral reefs. Oceanography and Marine Biology: an annual review, 39. pp. 355-389.

Cavanagh, J.E., Burns, K.A., Brunskill, G.J., Ryan, D.A.J., and Ahokas, J.T. (2000) Induction of hepatic cytochrome P-450 1A in Pikey Bream (Acanthopagrus berda) collected from agricultural and urban catchments in far north Queensland. Marine Pollution Bulletin, 41 (7-12). pp. 377-384.

Crossland, Michael Richard (1997) Impact of eggs, hatchlings and tadpoles of the introduced cane toad Bufo marinus (Anura: Bufonidae) on native aquatic fauna in Northern Queensland. PhD thesis, James Cook University.

Connell, Joseph H., Hughes, Terence P., and Wallace, Carden C. (1997) A 30-year study of coral abundance, recruitment, and disturbance at several scales in space and time. Ecological Monographs, 67 (4). pp. 461-488.

Costen, Andrew Richard (1996) The sedimentary, hydrodynamic and turbidity regimes at inner shelf coral reefs, Halifax Bay, Central Great Barrier Reef, Australia. Honours thesis, James Cook University.

Caley, M.J., Carr, M.H., Hixon, M.A., Hughes, T.P., Jones, G.P., and Menge, B.A. (1996) Recruitment and the local dynamics of open marine populations. Annual Review of Ecology and Systematics, 27. pp. 477-500.

Congdon, Bradley C., and Catterall, Carla P. (1994) Factors influencing the eastern curlews distribution and choice of foraging sites among tidal flats of Moreton Bay, South-east Queensland. Wildlife Research, 21 (5). pp. 507-518.

Chongprasith, Pornsook (1992) Nutrient release and nitrogen transformations resulting from resuspension of Great Barrier Reef shelf sediments. PhD thesis, James Cook University of North Queensland.

Cabanban, Annadel Salvio (1991) The dynamics of leiognathidae in a tropical demersal ichthyofaunal community. PhD thesis, James Cook University.

Clements, Kendall David (1991) Gut microorganisms of surgeonfishes (family Acanthuridae). PhD thesis, James Cook University of North Queensland.

Clements, K.D. (1991) Endosymbiotic communities of two herbivorous labroid fishes, Odax cyanomelas and O. pullus. Marine Biology, 109 (2). pp. 223-229.

Clements, K.D., Sutton, D.C., and Choat, J.H. (1989) Occurrence and characteristics of unusual protistan symbionts from surgeonfishes (Acanthuridae) of the Great Barrier Reef, Australia. Marine Biology, 102 (3). pp. 403-412.

Chisholm, John R.M. (1988) Photosynthesis, calcification, and photoadaptation, in reef-building crustose coralline algae on the Great Barrier Reef. PhD thesis, James Cook University.

Collins, John Douglas (1978) A study of the interactive biology of corals. PhD thesis, James Cook University.

D

Dichmont, Catherine M., Dutra, Leo X.C., Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Deng, Roy A., van Putten, Elizabeth I., Pascual, Ricardo, Dambacher, Jeffrey M., Warne, Michael St.J., Quinn, Ross H., Thébaud, Olivier, Bennett, John, Read, Mark, Wachenfeld, David, Davies, Julia, Garland, Anna, Dunning, Malcolm, Collier, Catherine, Waycott, Michelle, and Playford, Julia (2016) A generic method of engagement to elicit regional coastal management options. Ocean & Coastal Management, 124. pp. 22-32.

D'Anastasi, B.R., van Herwerden, L., Hobbs, J.A., Simpfendorfer, C.A., and Lukoschek, V. (2016) New range and habitat records for threatened Australian sea snakes raise challenges for conservation. Biological Conservation, 194. pp. 66-70.

Dulvy, Nicholas K., Davidson, Lindsay N.K., Kyne, Peter M., Simpfendorfer, Colin, Harrison, Lucy R., Carlson, John K., and Fordham, Sonja V. (2016) Ghosts of the coast: global extinction risk and conservation of sawfishes. Aquatic Conservation: marine and freshwater ecosystems . (In Press)

Dixson, Danielle L., Jennings, Ashley R., Atema, Jelle, and Munday, Philip L. (2015) Odor tracking in sharks is reduced under future ocean acidification conditions. Global Change Biology, 21 (4). pp. 1454-1462.

Drew, M., White, W.T., Dharmadi, , Harry, A.V., and Huveneers, C. (2015) Age, growth and maturity of the pelagic thresher Alopias pelagicusand the scalloped hammerhead Sphyrna lewini. Journal of Fish Biology, 86 (1). pp. 333-354.

Domenici, Paolo, Norin, Tommy, Bushnell, Peter G., Johansen, Jacob L., Skov, Peter Vilhelm, Svendsen, Morten B.S., Steffensen, John F., and Abe, Augusto S. (2015) Fast-starting after a breath: air-breathing motions are kinematically similar to escape responses in the catfish Hoplosternum littorale. Biology Open, 4 (1). pp. 79-85.

Dudgeon, Christine L., Pollock, Kenneth H., Braccini, J. Matias, Semmens, Jayson M., and Barnett, Adam (2015) Integrating acoustic telemetry into mark-recapture models to improve the precision of apparent survival and abundance estimates. Oecologia, 178 (3). pp. 761-772.

Duke, Norman C., and Schmitt, Klaus (2015) Mangroves: unusual forests at the seas edge. In: Pancel, Laslo, and Köhl, Michael, (eds.) Tropical Forestry Handbook. Springer, Berlin, Germany, pp. 1-24.

Davy, Lauren E., Simpfendorfer, Colin A., and Heupel, Michelle R. (2015) Movement patterns and habitat use of juvenile mangrove whiprays (Himantura granulata). Marine and Freshwater Research, 66 (6). pp. 481-492.

del Mar Palacios , Maria, Warren, Donald T., and McCormick, Mark I. (2015) Sensory cues of a top-predator indirectly control a reef fish mesopredator. Oikos, 125 (2). pp. 201-209.

Donelson, Jennifer M., and Munday, Philip L. (2015) Transgenerational plasticity mitigates the impact of global warming to offspring sex ratios. Global Change Biology, 21 (8). pp. 2954-2962.

Donelson, Jennifer M., McCormick, Mark I., Booth, David J., and Munday, Philip L. (2014) Reproductive acclimation to increased water temperature in a tropical reef fish. PLoS ONE, 9 (5). pp. 1-9.

D'agata, Stéphanie, Mouillot, David, Kulbicki, Michel, Andréföuet, Serge, Bellwood, David R., Cinner, Joshua E., Cowman, Peter F., Kronen, Mecki, Pinca, Silvia, and Vigliola, Laurent (2014) Human-mediated loss of phylogenetic and functional diversity in coral reef fishes. Current Biology, 24 (5). pp. 555-560.

Davis, Benjamin James (2014) Patterns and processes at multiple scales shape fish assemblage structure in tropical estuaries. PhD thesis, James Cook University.

Domenici, Paolo, Allan, Bridie J.M., Watson, Sue-Ann, McCormick, Mark I., and Munday, Philip L. (2014) Shifting from right to left: the combined effect of elevated CO2 and temperature on behavioural lateralization in a coral reef fish. PLoS One, 9 (1). pp. 1-6.

Dixson, Danielle L., Jones, Geoffrey P., Munday, Philip L., Planes, Serge, Pratchett, Morgan S., and Thorrold, Simon R. (2014) Experimental evaluation of imprinting and the role innate preference plays in habitat selection in a coral reef fish. Oecologia, 174 (1). pp. 99-107.

Davis, Ben, Mattone, Carlo, and Sheaves, Marcus (2014) Bottom-up control regulates patterns of fish connectivity and assemblage structure in coastal wetlands. Marine Ecology Progress Series, 500. pp. 175-186.

Dulvy, Nicholas K., Pardo, Sebastián A., Simpfendorfer, Colin, and Carlson, John K. (2014) Diagnosing the dangerous demography of manta rays using life history theory. PeerJ, 2. pp. 1-19.

Donaldson, Michael R., Hinch, Scott G., Suski, Cory D., Fisk, Aaron T., Heupel, Michelle R., and Cooke, Steven J. (2014) Making connections in aquatic ecosystems with acoustic telemetry monitoring. Frontiers in Ecology and the Environment, 12 (10). pp. 565-573.

Davis, Ben, Baker, Ronald, and Sheaves, Marcus (2014) Seascape and metacommunity processes regulate fish assemblage structure in coastal wetlands. Marine Ecology Progress Series, 500. pp. 187-202.

Devine, Brynn M., and Munday, Philip L. (2013) Habitat preferences of coral-associated fishes are altered by short-term exposure to elevated CO₂. Marine Biology, 160 (8). pp. 1955-1962.

Davies, Jaclyn, McCormack, Catherine, McKenna, Skye, Taylor, Helen, and Rasheed, Michael (2013) Productive capacities of tropical seagrasses communities at three locations along the East Coast of Queensland and their potential for carbon sequestration. In: 50th Australian Marine Sciences Association annual conference: shaping the future: abstracts, p. 108. From: AMSA 2013 Shaping the Future: 50th Annual Conference of the Australian Marine Sciences Association, 1-7 July 2013, Gold Coast, Queensland.

DiBattista, Joseph D., Berumen, Michael L., Gaither, Michelle R., Rocha, Luiz A., Eble, Jeff A., Choat, J. Howard, Craig, Matthew, Skillings, Derek J., and Bowen, Brian W. (2013) After continents divide: comparative phylogeography of reef fishes from the Red Sea and Indian Ocean. Journal of Biogeography, 40 (6). pp. 1170-1181.

Dartnall, A., Stevens, H., and Byrne, M. (2013) How to lose a population: the effect of Cyclone Larry on a population of Cryptasterina pentagona at Mission Beach, North Queensland. In: Echinoderms in a Changing World: proceedings of the 13th international echinoderm conference, pp. 181-184. From: 13th International Echinoderm Conference, 5-9 January 2009, Hobart, TAS, Australia.

Donelson, Jennifer, Munday, Philip, McCormick, Mark, and Pitcher, C.R. (2012) Rapid transgenerational acclimation of a tropical reef fish to climate change. Nature Climate Change, 2. pp. 30-32.

Dixson, Danielle L., Pratchett, Morgan S., and Munday, Philip L. (2012) Reef fishes innately distinguish predators based on olfactory cues associated with recent prey items rather than individual species. Animal Behaviour, 84 (1). pp. 45-51.

Dixson, D.L. (2012) Predation risk assessment by larval reef fishes during settlement-site selection. Coral Reefs, 31 (1). pp. 255-261.

Domenici, Paolo, Allan, Bridie, McCormick, Mark I., and Munday, Philip L. (2012) Elevated carbon dioxide affects behavioural lateralization in a coral reef fish. Biology Letters, 8 (1). pp. 78-81.

Devine, Brynn M., Munday, Philip L., and Jones, Geoffrey P. (2012) Homing ability of adult cardinalfish is affected by elevated carbon dioxide. Oecologia, 168 (1). pp. 269-276.

Donelson, J.M., Munday, P.L., and McCormick, M.I. (2012) Climate change may affect fish through an interaction of parental and juvenile environments. Coral Reefs, 31 (3). pp. 753-762.

Davis, Benjamin, Johnston, Ross, Baker, Ronnie, and Sheaves, Marcus (2012) Fish utilisation of wetland nurseries with complex hydrological connectivity. PLoS ONE, 7 (11). pp. 1-11.

Devine, B.M., Munday, P.L., and Jones, G.P. (2012) Rising CO2 concentrations affect settlement behaviour of larval damselfishes. Coral Reefs, 31 (1). pp. 229-238.

Dupont, Sam, Moya, Aurélie, and Bailly, Xavier (2012) Stable photosymbiotic relationship under CO2-induced acidification in the acoel worm Symsagittifera roscoffensis. PLoS ONE, 7 (1). pp. 1-8.

Donelson, Jennifer M., and Munday, Philip L. (2012) Thermal sensitivity does not determine acclimation capacity for a tropical reef fish. Journal of Animal Ecology, 81 (5). pp. 1126-1131.

Donelson, Jennifer Marie (2011) Climate change and the future for coral reef fishes: the potential for acclimation. PhD thesis, James Cook University.

Dixson, D.L., Munday, P.L., Pratchett, M., and Jones, G.P. (2011) Ontogenetic changes in responses to settlement cues by anemonefish. Coral Reefs, 30 (4). pp. 903-910.

Dixson, Danielle L., Jones, Geoffrey P., Munday, Philip L., Pratchett, Morgan S., Srinivasan, Maya, Planes, Serge, and Thorrold, Simon R. (2011) Terrestrial chemical cues help coral reef fish larvae locate settlement habitat surrounding islands. Ecology and Evolution, 1 (4). pp. 586-595.

Dixson, Danielle Lynn (2011) Smelling home: the use of olfactory cues for settlement site selection by coral reef fish larvae. PhD thesis, James Cook University.

Devine, Brynn Michelle (2011) The effects of ocean acidification on habitat associations of coral reef fishes. Masters (Research) thesis, James Cook University.

Donelson, Jennifer M., Munday, Philip, Mccormick, Mark I., and Nilsson, Göran E. (2011) Acclimation to predicted ocean warming through developmental plasticity in a tropical reef fish. Global Change Biology, 17 (4). pp. 1712-1719.

Dickens, Luke C., Goatley, Christopher H.R., Tanner, Jennifer K., and Bellwood, David R. (2011) Quantifying relative diver effects in underwater visual censuses. PLoS One, 6 (4). pp. 1-8.

Daw, Tim M., Cinner, Joshua E., McClanahan, Timothy R., Graham, Nicholas A.J., and Wilson, Shaun K. (2011) Design factors and socioeconomic variables associated with ecological responses to fishery closures in the Western Indian Ocean. Coastal Management, 39 (4). pp. 412-424.

Dale, Patricia E.R., Dale, Michael B., Dowe, David L., Knight, Jon M., Lemckert, Charles J., Low Choy, Darryl C., Sheaves, Marcus J., and Sporne, Ilva (2010) A conceptual model for integrating physical geography research and coastal wetland management, with an Australian example. Progress in Physical Geography, 34 (5). pp. 605-624.

Dixson, Danielle L., Munday, Philip L., and Jones, Geoffrey P. (2010) Ocean acidification disrupts the innate ability of fish to detect predator olfactory cues. Ecology Letters, 13 (1). pp. 68-75.

Donelson, J.M., Munday, P.L., McCormick, M.I., Pankhurst, N.W., and Pankhurst, P.M. (2010) Effects of elevated water temperature and food availability on the reproductive performance of a coral reef fish. Marine Ecology Progress Series, 401. pp. 233-243.

Donelson, Jennifer M., Munday, Philip L., and McCormick, Mark I. (2009) Parental effects on offspring life histories: when are they important? Biology Letters, 5 (2). pp. 262-265.

Diaz-Pulido, Guillermo, McCook, Laurence, Dove, Sophie, Berkelmans, Ray, Roff, George, Kline, David I., Weeks, Scarla, Evans, Richard D., Williamson, David H., and Hoegh-Guldberg, Ove (2009) Doom and boom on a resilient reef: climate change, algal overgrowth and coral recovery. PLoS ONE, 4 (4). - .

Dixson, Danielle L. , Jones, Geoffrey P., Munday, Philip L., Planes, Serge, Pratchett, Morgan S., Srinivasan, Maya, Syms, Craig, and Thorrold, Simon R. (2008) Coral reef fish smell leaves to find island homes. Proceedings of the Royal Society of London Series B, Biological Sciences, 275. pp. 2831-2839.

Dornelas, Maria, and Connolly, Sean (2008) Multiple modes in a coral species abundance distribution. Ecology Letters, 11 (10). pp. 1008-1016.

Devlin, M.J., Barry, J., Mills, D.K., Gowen, R.J., Foden, J., Sivyer, D., and Tett, P. (2008) Relationships between suspended particulate material, light attenuation and Secchi depth in UK marine waters. Estuarine, Coastal and Shelf Science , 79 (3). pp. 429-439.

Donelson, Jennifer M., McCormick, Mark I., and Munday, Philip (2008) Parental condition affects early life-history of a coral reef fish. Journal of Experimental Marine Biology and Ecology, 360 (2). pp. 109-116.

Dinsdale, Elizabeth A., Pantos, Olga, Smriga, Steven, Edwards, Robert A., Angly, Florence, Wegley, Linda, Hatay, Mark, Hall, Dana, Brown, Elysa, Haynes, Matthew, Krause, Lutz, Sala, Enric, Sandin, Stuart A., Thurber, Rebecca Vega, Willis, Bette L., Azam, Farooq, Knowlton, Nancy, and Rohwer, Forest (2008) Microbial ecology for four coral atolls in the Northern Line Islands. PLoS Biology, 3 (2). pp. 1-17.

Diaz-Pulido, G., McCook, L.J., Chin, A., and Davidson, J. (2007) Cyclone promotes rapid colonisation of benthic diatoms in the Great Barrier Reef. Coral Reefs, 26 (4). p. 787.

Depczynski, Martial (2006) Small cryptic fishes on coral reefs : a new perspective on reef fish ecology and life histories. PhD thesis, James Cook University.

Dornelas, Maria Ana Azeredo de (2006) Coral assemblages and neutral theory. PhD thesis, James Cook University.

Dornelas, Maria, Connolly, Sean R., and Hughes, Terrence P. (2006) Coral reef diversity refutes the neutral theory of biodiversity. Nature, 440 (7080). pp. 80-82.

Dove, Sophie, Ortiz, Juan Carlos, Enriquez, Susana, Fine, Maoz, Fisher, Paul, Iglesias-Prieto, Roberto, Thornhill, Dan, and Hoegh-Guldberg, Ove (2006) Response of holosymbiont pigments from the scleractinian coral Montipora monasteriata to short-term heat stress. Limnology and Oceanography, 51 (2). pp. 1149-1158.

Depczynski, Martial, and Bellwood, David R. (2005) Wave energy and spatial variability in community structure of small cryptic coral reef fishes. Marine Ecology Progress Series, 303. pp. 283-293.

da Silva, Eduardo Teixeira (2005) Cadmium accumulation in the barnacle biomonitor Balanus amphitrite: combining field and laboratory observations with modelling. PhD thesis, James Cook University.

Devlin, Michelle (2005) Spatial and temporal patterns of flood plumes in the Great Barrier Reef, Australia. PhD thesis, James Cook University.

Duke, Norman C., Bell, Alicia M., Pedersen, Dan K., Roelfsema, Chris M., and Bengston Nash, Susan (2005) Herbicides implicated as the cause of severe mangrove dieback in the Mackay region, NE Australia: consequences for marine plant habitats of the GBR World Heritage Area. Marine Pollution Bulletin, 51 (1-4). pp. 308-324.

Dempster, Tim, and Kingsford, Michael J. (2004) Drifting objects as habitat for pelagic juvenile fish off New South Wales, Australia. Marine and Freshwater Research, 55 (7). pp. 675-687.

Davis, K.L.F., Russ, G.R., Williamson, D.H., and Evans, R.D. (2004) Surveillance and poaching on inshore reefs of the Great Barrier Reef Marine Park. Coastal Management, 32 (4). pp. 373-387.

Depczynski, M., and Bellwood, D.R. (2004) Microhabitat utilisation patterns in cryptobenthis coral reef fish communities. Marine Biology, 145 (3). pp. 455-463.

Diaz-Pulido, Guillermo, and McCook, Laurence J (2004) Effects of live coral, epilithic algal communities and substrate type on algal recruitment. Coral Reefs, 23 (2). pp. 225-233.

Dove, Sophie (2004) Scleractinian corals with photoprotective host pigments are hypersensitive to thermal bleaching. Marine Ecology Progress Series, 272. pp. 99-116.

Dartnall, Alan J., Byrne, Maria, Collins, John, and Hart, Michael W. (2003) A new viviparous species of asterinid (Echinodermata, Asteroidea, Asterinidae) and a new genus to accommodate the species of pantropical exiguoid sea stars. Zootaxa, 359. pp. 1-14.

Diaz-Pulido, Guillermo, and McCook, Laurence J. (2003) Relative roles of herbivory and nutrients in the recruitment of coral-reef seaweeds. Ecology, 84 (8). pp. 2026-2033.

Depczynski, Martial, and Bellwood, David R. (2003) The role of cryptobenthic reef fishes in coral reef trophodynamics. Marine Ecology Progress Series, 256. pp. 183-191.

Diaz-Pulido, Guillermo (2002) Algal recruitment and reproduction in the context of reef degradation: interactions with corals, substrates, herbivores and nutrients. PhD thesis, James Cook University.

Devlin, Michelle, Waterhouse, Jane, Taylor, Jeremy, and Brodie, Jon (2001) Flood plumes in the Great Barrier Reef : spatial and temporal patterns in composition and distribution. Report. Great Barrier Reef Marine Park Authority, Townsville, Australia.

Dove, S.G., Hoegh-Guldberg, O., and Ranganathan, S. (2001) Major colour patterns of reef-building corals are due to a family of GFP-like proteins. Coral Reefs, 19 (3). pp. 197-204.

Dijkstra, Henk, and Southgate, Paul C. (2000) A new living scallop (Bivalvia: Pectinidae) from the south-western Pacific. Molluscan Research, 20 (2). pp. 13-18.

de Nys, Rocky (1991) Natural products chemistry and chemical ecology of tropical marine algae. PhD thesis, James Cook University.

Duke, Norman (1988) An endemic mangrove species, Avicennia integra sp. nov. (Avicenniaceae), in northern Australia. Australian Systematic Botany, 1 (2). pp. 177-180.

Dale, P.E.R., Hulsman, K., Harrison, D., and Congdon, Brad (1986) Distribution of immature stages of Aedes vigilax on a salt marsh in south-eastern Queensland. Australian Journal of Ecology, 11 (3). pp. 269-278.

E

Espinoza, Mario, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2016) Evidence of partial migration in a large coastal predator: opportunistic foraging and reproduction as key drivers? PLoS ONE, 11 (2). pp. 1-22.

Ebner, Brendan C., Morgan, David L., Kerezsy, Adam, Hardie, Scott, Beatty, Stephen J., Seymour, Jamie E., Donaldson, James A., Linke, Simon, Peverell, Stirling, Roberts, David, Espinoza, Thomas, Marshall, Nadine, Kroon, Frederieke J., Burrows, Damien W., and McAllister, Ryan R.J. (2016) Enhancing conservation of Australian freshwater ecosystems: identification of freshwater flagship fishes and relevant target audiences. Fish and Fisheries. (In Press)

Espinoza, Mario, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2015) Residency patterns and movements of grey reef sharks (Carcharhinus amblyrhynchos) in semi-isolated coral reef habitats. Marine Biology, 162 (2). pp. 343-358.

Espinoza, Mario, Lédée, Elodie J.I., Simpfendorfer, Colin A., Tobin, Andrew J., and Heupel, Michelle R. (2015) Contrasting movements and connectivity of reef-associated sharks using acoustic telemetry: implications for management. Ecological Applications, 25 (8). pp. 2101-2118.

Espinoza, Mario, Munroe, Samantha E.M., Clarke, Tayler M., Fisk, Aaron T., and Wehrtmann, Ingo S. (2015) Feeding ecology of common demersal elasmobranch species in the Pacific coast of Costa Rica inferred from stable isotope and stomach content analyses. Journal of Experimental Marine Biology and Ecology, 470. pp. 12-25.

Espinoza, Mario, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2015) Movement patterns of silvertip sharks (Carcharhinus albimarginatus) on coral reefs. Coral Reefs, 34 (3). pp. 807-821.

Eriksen, Marit Skog, Poppe, Trygve T., McCormick, Mark, Damsgard, Børge, Salte, Ragnar, Braastad, Bjarne O., and Bakken, Morten (2015) Simulated maternal pre-spawning stress affects offspring's attributes in farmed Atlantic salmon Salmo salar (Linnaeus, 1758). Aquaculture Research, 46 (6). pp. 1480-1489.

Espinoza, Mario, Cappo, Mike, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2014) Quantifying shark distribution patterns and species-habitat associations: implications of marine park zoning. PLoS ONE, 9 (9). pp. 1-17.

Eagle, Janelle V., Baird, Andrew H., Jones, Geoffrey P., and Kingsford, Michael J. (2012) Recruitment hotspots: consistent spatial patterns in the relative abundance of coral recruits at One Tree Island, Australia. Galaxea, Journal of Coral Reef Studies, 14 (1). pp. 5-22.

Emslie, M.J., Logan, M., Ceccarelli, D.M., Cheal, A.J., Hoey, A.S., Miller, I., and Sweatman, H.P.A. (2012) Regional-scale variation in the distribution and abundance of farming damselfishes on Australia's Great Barrier Reef. Marine Biology: international journal on life in oceans and coastal waters, 159 (6). pp. 1293-1304.

Eriksen, M.S., Færevik, G., Kittilsen, S., McCormick, M.I., Damsgård, B., Braithwaite, V.A., Braastad, B.O., and Bakken, M. (2011) Stressed mothers - troubled offspring: a study of behavioural maternal effects in farmed Salmo salar. Journal of Fish Biology, 79 (3). pp. 575-586.

Eléaume, Marc, Beaman, Robin J., Griffiths, Huw J., Best, Ben, Riddle, Martin J., Wadley, Victoria, Rintoul, Stephen R., Hemery, Lenaïg G., and Améziane, Nadia (2011) Near-bottom current direction inferred from comatulid crinoid feeding postures on the Terre Adélie and George V shelf, East Antarctica. Deep-sea Research. Part II: topical studies in oceanography, 58 (1-2). pp. 163-169.

Emslie, M.J., Pratchett, M.S., and Cheal, A.J. (2011) Effects of different disturbance types on butterflyfish communities of Australia's Great Barrier Reef. Coral Reefs, 30 (2). pp. 461-471.

Emslie, M.J., Pratchett, M.S., Cheal, A.J., and Osborne, K. (2010) Great Barrier Reef butterflyfish community structure: the role of shelf position and benthic community type. Coral Reefs, 29 (3). pp. 705-715.

Edmunds, Richard C. (2009) Evidence for thermal adaptation among geographically, genetically and thermally distinct populations of the Australian barramundi, Lates calcarifer (Bloch 1790): a multi-level approach. PhD thesis, James Cook University.

Ettinger-Epstein, Piers, and Kingsford, Michael J. (2008) Effects of the El Nino southern oscillation on Turbo torquatus (Gastropoda) and their kelp habitat. Austral Ecology, 33 (5). pp. 594-606.

Evans, R.D. (2008) Assessment of an underwater biopsy probe for collecting teleost fish tissue samples. Marine Ecology Progress Series, 368. pp. 305-308.

Ettinger-Epstein, Piers, Whalan, Steve, Battershill, Christopher N., and de Nys, Rocky (2008) A hierarchy of settlement cues influences larval behaviour in a coral reef sponge. Marine Ecology Progress Series, 365. pp. 103-113.

Ettinger-Epstein, Piers, Whalan, Steve W., Battershill, Christopher N., and de Nys, Rocky (2007) Temperature cues gametogenesis and larval release in a tropical sponge. Marine Biology, 153 (2). pp. 171-178.

Edgar, Graham J., Russ, Garry R., and Babcock, Russ C. (2007) Marine protected areas. In: Connell, Sean D., and Gillanders, Bronwyn M., (eds.) Marine Ecology. Oxford University Press, South Melbourne, VIC, Australia, pp. 533-555.

Ettinger-Epstein, Piers (2006) Natural products and their supply from the tropical sponge Luffariella variabilis. PhD thesis, James Cook University.

Eagle, Janelle Vinita (2006) Recruitment hotspots around a coral reef: the roles of hydrodynamics and habitats. PhD thesis, James Cook University.

Edmunds, Peter J., Gates, Ruth D., Leggat, William, Hoegh-Guldberg, Ove, and Allen-Requa, Laurie (2005) The effect of temperature on the size and population density of dinoflagellates in larvae of the reef coral Porites astreoides. Invertebrate Biology, 124 (3). pp. 185-193.

Eagle, Janelle V., and Jones, Geoffrey P. (2004) Mimicry in coral reef fishes: ecological and behavioural responses of a mimic to its model. Journal of Zoology, 264 (1). pp. 33-43.

Evans, R.D., and Russ, G.R. (2004) Larger biomass of targeted reef fish in the no-take marine reserves on the Great Barrier Reef, Australia. Aquatic Conservation: marine and freshwater ecosystems , 14 (5). pp. 505-519.

Eagle, Janelle V., Jones, Geoffrey P., and McCormick, Mark I. (2001) A multi-scale study of the relationships between habitat use and the distribution and abundance patterns of three coral reef angelfishes (Pomacanthidae). Marine Ecology-Progress Series, 214. pp. 253-265.

Emslie, Michael J., and Jones, Geoffrey P. (2001) Patterns of embryo mortality in a demersally spawning coral reef fish and the role of predatory fishes. Environmental Biology of Fishes, 60 (4). pp. 363-373.

F

Ferrari, Maud C.O., McCormick, Mark I., Meekan, Mark G., and Chivers, Douglas P. (2015) Background level of risk and the survival of predator-naive prey: can neophobia compensate for predator naivety in juvenile coral reef fishes? Proceedings of the Royal Society of London Series B, Biological Sciences, 282 (1799). pp. 1-5.

Foster, T., Gilmour, J.P., Chua, C.M., Falter, J.L., and McCulloch, M.T. (2015) Effect of ocean warming and acidification on the early life stages of subtropical Acropora spicifera. Coral Reefs, 34 (4). pp. 1217-1226.

Fabricius, K, Kluibenschedl, A., Harrington, L., Noonan, S., and De'ath, G. (2015) In situ changes of tropical crustose coralline algae along carbon dioxide gradients. Scientific Reports, 5.

Ferrari, Maud C.O., Munday, Philip L., Rummer, Jodie L., McCormick, Mark I., Corkill, Katherine, Watson, Sue-Ann, Allan, Bridie J.M., Meekan, Mark G., and Chivers, Douglas P. (2015) Interactive effects of ocean acidification and rising sea temperatures alter predation rate and predator selectivity in reef fish communities. Global Change Biology, 21. pp. 1848-1855.

Ferrari, Maud C.O., McCormick, Mark I., Allan, Bridie J.M., Choi, Rebecca, Ramasamy, Ryan A., Johansen, Jacob L., Mitchell, Matthew D., and Chivers, Douglas P. (2015) Living in a risky world: the onset and ontogeny of an integrated antipredator phenotype in a coral reef fish. Scientific Reports, 5. pp. 1-13.

Fox, Rebecca J., Bellwood, David R., and Jennions, Michael D. (2015) Why pair? Evidence of aggregative mating in a socially monogamous marine fish (Siganus doliatus, Siganidae). Royal Society Open Science, 2. pp. 1-7.

Ferrari, Maud C.O., McCormick, Mark I., Allan, Bridie J.M., Choi, Rebecca, Ramasamy, Ryan A., and Chivers, Douglas P. (2015) The effects of background risk on behavioural lateralization in a coral reef fish. Functional Ecology, 29 (12). pp. 1553-1559.

Fabricius, K.E, Logan, M., Weeks, S., and Brodie, J. (2014) The effects of river run-off on water clarity across the central Great Barrier Reef. Marine Pollution Bulletin, 84 (1-2). pp. 191-200.

Fox, Rebecca J., and Bellwood, David R. (2014) Herbivores in a small world: network theory highlights vulnerability in the function of herbivory on coral reefs. Functional Ecology, 28 (3). pp. 642-651.

Frisch, Ashley J., Ireland, Matthew, and Baker, Ronald (2014) Trophic ecology of large predatory reef fishes: energy pathways, trophic level, and implications for fisheries in a changing climate. Marine Biology, 161 (1). pp. 61-73.

Fraser, Matthew R., and McCormick, Mark I. (2014) Gender-specific benefits of eating eggs at resident reef fish spawning aggregation sites. Marine Ecology Progress Series, 517. pp. 209-216.

Figueiredo, Joana, Baird, Andrew, Harii, Saki, and Connolly, Sean R. (2014) Increased local retention of reef coral larvae as a result of ocean warming. Nature Climate Change, 4 (6). pp. 498-502.

Feary, David A., Pratchett, Morgan S., Emslie, Michael J., Fowler , Ashley M., Figueira, Will F., Luiz, Osmar J., Nakamura, Yohei, and Booth, David J. (2014) Latitudinal shifts in coral reef fishes: why some species do and others don't shift. Fish and Fisheries, 15 (4). pp. 593-615.

Figueiredo, Joana, Baird, Andrew H., and Connolly, Sean R. (2013) Synthesizing larval competence dynamics and reef-scale retention reveals a high potential for self-recruitment in corals. Ecology, 94 (3). pp. 650-659.

Fulton, Christopher J., Johansen, Jacob L., and Steffensen, John F. (2013) Energetic extremes in aquatic locomotion by coral reef fishes. PLoS ONE, 8 (1). pp. 1-6.

Fox, R.J., and Bellwood, D.R. (2013) Niche partitioning of feeding microhabitats produces a unique function for herbivorous rabbitfishes (Perciformes, Siganidae) on coral reefs. Coral Reefs, 32 (1). pp. 13-23.

Fadli, Nur, Campbell, Stuart J., Ferguson, Kathryn, Keyse, Jude, Rudi, Edi, Riedel, Arthur, and Baird, Andrew H. (2012) The role of habitat creation in coral reef conservation: a case study from Aceh, Indonesia. Oryx, 46 (4). pp. 501-507.

Feeney, W.E., Lönnstedt, O.M., Bosiger, Y., Martin, J., Jones, G.P., Rowe, R.J., and McCormick, M.I. (2012) High rate of prey consumption in a small predatory fish on coral reefs. Coral Reefs, 31 (3). pp. 909-918.

Ferrari, Maud C.O., McCormick, Mark I., Munday, Philip L., Meekan, Mark G., Dixson, Danielle, Lönnstedt, Oona, and Chivers, Douglas P. (2012) Effects of ocean acidification on visual risk assessment in coral reef fishes. Functional Ecology, 26 (3). pp. 553-558.

Fox, Rebecca J. (2012) The trophic and spatial ecology of rabbitfishes (Perciformes, Siganidae) on coral reefs. PhD thesis, James Cook University.

Ferrari, Maud C.O., Manassa, Rachel P., Dixson, Danielle L., Munday, Philip L., McCormick, Mark I., Meekan, Mark G., Sih, Andrew, and Chivers, Douglas P. (2012) Effects of ocean acidification on learning in coral reef fishes. PLoS ONE, 7 (2). pp. 1-10.

Flores, Florita, Hoogenboom, Mia O., Smith, Luke D., Cooper, Timothy F., Abrego, David, and Negri, Andrew P. (2012) Chronic exposure of corals to fine sediments: lethal and sub-lethal impacts. PLoS ONE, 7 (5). pp. 1-12.

Frisch, Ashley J., and Hobbs, Jean-Paul A. (2012) Demography, fishery yield and potential management strategies of painted spiny lobster (Panulirus versicolor) at Northwest Island, Great Barrier Reef, Australia. Marine and Freshwater Research, 63 (5). pp. 387-396.

Frisch, Ashley J., Cole, Andrew J., Hobbs, Jean-Paul A., Rizzari, Justin R., and Munkres, Katherine P. (2012) Effects of spearfishing on reef fish populations in a multi-use conservation area. PLoS ONE, 7 (12). pp. 1-11.

Figueiredo, J., Baird, A.H., Cohen, M.F., Flot, J-F., Kamiki, T., Meziane, T., Tsuchyia, M., and Yamasaki, H. (2012) Ontogenetic change in the lipid and fatty acid composition of scleractinian coral larvae. Coral Reefs, 31 (2). pp. 613-619.

Ferrari, Maude C.O., McCormick, Mark I., Munday, Philip L., Meekan, Mark G., Dixson, Danielle L., Lonnstedt, Öona, and Chivers, Douglas P. (2011) Putting prey and predator into the CO2 equation – qualitative and quantitative effects of ocean acidification on predator–prey interactions. Ecology Letters, 14 (11). pp. 1143-1148.

Fox, Rebecca J., and Bellwood, David R. (2011) Unconstrained by the clock? Plasticity of diel activity rhythm in a tropical reef fish, Siganus lineatus. Functional Ecology, 25 (5). pp. 1096-1105.

Ferrari, Maud C.O., Dixson, Danielle L., Munday, Philip L., McCormick, Mark I., Meekan, Mark G., Sih, Andrew, and Chivers, Douglas P. (2011) Intrageneric variation in antipredator responses of coral reef fishes affected by ocean acidification: implications for climate change projections on marine communities. Global Change Biology, 17 (9). pp. 2980-2986.

Frisch, Ashley J., and Hobbs, Jean-Paul A. (2011) Effects of autotomy on long-term survival and growth of painted spiny lobster (Panulirus versicolor) on the Great Barrier Reef, Australia. Marine Biology, 158 (7). pp. 1645-1652.

Fujii, T., Keshavmurthy, S., Zhou, W., Hirose, E., Chen, C.A., and Reimer, J.D. (2011) Coral-killing cyanobacteriosponge (Terpios hoshinota) on the Great Barrier Reef. Coral Reefs, 30 (2). p. 483.

Fitt, William K., and Yellowlees, David (2011) Preface. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 1-2.

Ferrier-Pagès, Christine, Hoogenboom, Mia, and Houlbrèque, Fanny (2011) The role of plankton in coral trophodynamics. In: Dubinsky, Zvy, and Stambler, Noga, (eds.) Coral Reefs: an ecosystem in transition. Springer, Dordrecht, The Netherlands, pp. 215-229.

Feary, D.A., Burt, J.A., Bauman, A.G., Usseglio, P., Sale, P.F., and Cavalcante, G.H. (2010) Fish communities on the world's warmest reefs: what can they tell us about the effects of climate change in the future? Journal of Fish Biology, 77 (8). pp. 1931-1947.

Fuentes, M.M.P.B., Limpus, C.J., Hamann, M., and Dawson, J. (2010) Potential impacts of projected sea-level rise on sea turtle rookeries. Aquatic Conservation: marine and freshwater ecosystems , 20 (2). pp. 132-139.

Feagin, Rusty A., Mukherjee, Nibedita, Shanker, Kartik, Baird, Andrew H., Cinner, Joshua, Kerr, Alexander M., Koedam, Nico, Sridhar, Aarthi, Arthur, Rohan, Jayatissa, L.P., Lo Seen, Danny, Menon, Manju, Rodriguez, Sudarshan, Shamsuddoha, Md., and Dahdouh-Guebas, Farid (2010) Shelter from the storm? Use and misuse of coastal vegetation bioshields for managing natural disasters. Conservation Letters, 3 (1). pp. 1-11.

Farnsworth, Claire A, Bellwood, David, and Van Herwerden, Lynne (2010) Genetic structure across the GBR: evidence from short-lived gobies. Marine Biology, 157 (5). pp. 945-953.

Fuiman, Lee A., Meekan, Mark G., and McCormick, Mark I. (2010) Maladaptive behavior reinforces a recruitment bottleneck in newly settled fishes. Oecologia, 164 (1). pp. 99-108.

Fraser, Matthew Robert (2009) Egg predation at tropical reef fish spawning aggregation sites: trade-offs for fitness. PhD thesis, James Cook University.

Fernandez-Jover, Damian, Sanchez-Jerez, Pablo, Bayle-Sempere, Just T, Arechavala-Lopez, Pablo, Martinez-Rubio, Laura, Lopez Jimenez, Jose Angel, and Javier Martinez Lopez, Francisco (2009) Coastal fish farms are settlement sites for juvenile fish. Marine Environmental Research, 68 (2). pp. 89-96.

Feagin, R.A., Lozada-Bernard, S.M. , Ravens, T.M., Möller, I., Yeager, K.M. , and Baird, A.H. (2009) Does vegetation prevent wave erosion of salt marsh edges? National Academy of Sciences. Proceedings, 106 (25). pp. 10109-10113.

Feary, David A., McCormick, Mark I., and Jones, Geoffrey P. (2009) Growth of reef fishes in response to live coral cover. Journal of Experimental Marine Biology and Ecology, 373 (1). pp. 45-49.

Fox, Rebecca J., Sunderland, Tony L., Hoey, Andrew, and Bellwood, David R. (2009) Estimating ecosystem function: contrasting roles of closely related herbivorous rabbitfishes (Siganidae) on coral reefs. Marine Ecology Progress Series, 385. pp. 261-269.

Frisch, Ashley J., and Hobbs, Jean-Paul A. (2009) Rapid assessment of anemone and anemonefish populations at the Keppel Islands [electronic resource]: a report to the Great Barrier Reef Marine Park Authority. Report. Great Barrier Reef Marine Park Authority, Australia.

Foden, J., Sivyer, D.B., Mills, D.K., and Devlin, M.J. (2008) Spatial and temporal distribution of chromophoric dissolved organic matter (CDOM) fluorescence and its contribution to light attenuation in UK waterbodies. Estuarine, Coastal and Shelf Science , 79 (4). pp. 707-717.

Frisch, Ashley J. (2008) Social organisation and den utilisation of painted spiny lobster (Panulirus versicolor) on a coral reef at Northwest Island, Australia. Marine and Freshwater Research, 59 (6). pp. 521-528.

Feagin, Rusty, Baird, Andrew, and Kerr, Alex (2008) Comment on "Forest clearance boosted power of Cyclone Nargis". Nature, 453. p. 270.

Figueiredo, Joana, Penha-Lopes, Gil, Anto, Justin, Narciso, Luís, and Lin, Junda (2008) Fecundity, brood loss and egg development through embryogenesis of Armases cinereum (Decapoda: Grapsidae). Marine Biology, 154 (2). pp. 287-294.

Frisch, A.J., Baker, R., Hobbs, J-P. A., and Nankervis, L. (2008) A quantitative comparison of recreational spearfishing and linefishing on the Great Barrier Reef: implications for management of multi-sector coral reef fisheries. Coral Reefs, 27 (1). pp. 85-95.

Feary, David A., Almany, Glenn R., McCormick, Mark I., and Jones, Geoffrey P. (2007) Habitat choice, recruitment and the response of coral reef fishes to coral degradation. Oecologia, 153 (3). pp. 727-737.

Frisch, Ashley J. (2007) Population biology and fishery ecology of the painted crayfish, Panulirus versicolor, on the Great Barrier Reef. PhD thesis, James Cook University.

Fox, Rebecca J., and Bellwood, David R. (2007) Quantifying herbivory across a coral reef depth gradient. Marine Ecology Progress Series, 339. pp. 49-59.

Feary, David A., Almany, Glenn R., Jones, Geoffrey P., and McCormick, Mark I. (2007) Coral degradation and the structure of tropical reef fish communities. Marine Ecology Progress Series, 333. pp. 243-248.

Feary, David A. (2007) The influence of coral degradation on tropical fish community structure. PhD thesis, James Cook University.

Frisch, Ashley (2005) Bachelors seek house and harem: the cryptic word of crayfish on coral reefs. Australasian Science, 26 (10). pp. 41-42.

Fisher, Rebecca, Leis, Jeffrey M., Clark, Domine L., and Wilson, Shaun K. (2005) Critical swimming speeds of late-stage coral reef fish larvae: variation within species, among species and between locations. Marine Biology, 147 (5). pp. 1201-1212.

Friesen, V.L., Birt, T.P., Piatt, J.F., Golightly, R., Newman, S.H., Hebert, P.N., Congdon, B.C., and Gissing, G. (2005) Population genetic structure and conservation of marbled murrelets (Brachyramphus marmoratus). Conservation Genetics, 6 (4). pp. 607-614.

Fulton, Christopher John (2005) Wave energy and the role of swimming in reef fish ecology. PhD thesis, James Cook University.

Fulton, C.J., Bellwood, D.R., and Wainwright, P.C. (2005) Wave energy and swimming performance shape coral reef fish assemblages. Proceedings of the Royal Society of London Series B, Biological Sciences, 272 (1565). pp. 827-832.

Fisher, Rebecca (2005) Swimming speeds of larval coral reef fishes: impacts on self-recruitment and dispersal. Marine Ecology Progress Series, 285. pp. 223-232.

Flores, Augusto A.V., Abrantes, Katya G., and Paula, José (2005) Estimating abundance and spatial distribution patterns of the bubble crab Dotilla fenestrata (Crustacea: Brachyura). Austral Ecology, 30 (1). pp. 14-23.

Furnas, Miles, Mitchell, Alan, Skuza, Michelle, and Brodie, Jon (2005) In the other 90%: phytoplankton responses to enhanced nutrient availability in the Great Barrier Reef lagoon. Marine Pollution Bulletin, 51 (1). pp. 253-265.

Fulton, C.J., and Bellwood, D.R. (2004) Wave exposure, swimming performance, and the structure of tropical and temperate reef fish assemblages. Marine Biology, 144 (3). pp. 429-437.

Fisher, Rebecca (2002) The functional capabilities of reef fish larvae: implications for dispersal during the pelagic phase. PhD thesis, James Cook University.

Fisher, R., and Bellwood, D.R. (2002) A light trap design for stratum-specific sampling of reef fish larvae. Journal of Experimental Marine Biology and Ecology, 269 (1). pp. 27-37.

Ferry-Graham, Lara A., Wainwright, Peter C., Westneat, Mark W., and Bellwood, David R. (2001) Modulation of prey capture kinematics in the cheeklined wrasse Oxycheilinus digrammus (Teleostei: Labridae). Journal of Experimental Zoology, 290 (2). pp. 88-100.

Ferry-Graham, Lara A., Wainwright, Peter C., Hulsey, C. Darrin, and Bellwood, David R. (2001) Evolution and mechanics of long jaws in butterflyfishes (Family Chaetodontidae). Journal of Morphology, 248 (2). pp. 120-143.

Ferry-Graham, Lara A., Wainwright, Peter C., and Bellwood, David R. (2001) Prey capture in long-jawed butterflyfishes (Chaetodontidae): the functional basis of novel feeding habits. Journal of Experimental Marine Biology and Ecology, 256 (2). pp. 167-184.

Fisher, R., and Bellwood, D.R. (2001) Effects of feeding on the sustained swimming abilities of late-stage larval Amphiprion melanopus. Coral Reefs, 20 (2). pp. 151-154.

Fulton, C.J., Bellwood, D.R., and Wainwright, P.C. (2001) The relationship between swimming ability and habitat use in wrasses (Labridae). Marine Biology, 139 (1). pp. 25-33.

Fisher, Rebecca, Bellwood, David R., and Job, Suresh (2000) Development of swimming abilities in reef fish larvae. Marine Ecology-Progress Series, 202. pp. 163-173.

Fisk, David Anthony (1997) The role of recruitment in coral community regeneration. PhD thesis, James Cook University.

Forbes, Gregory Allan (1996) The diet and feeding ecology of the green sea turtle (Chelonia mydas) in an algal-based coral reef community. PhD thesis, James Cook University.

Ferreira, Beatrice Padovani (1993) Age, growth, reproduction and population biology of Plectropomus spp (Epinephelinae: Serranidae) on the Great Barrier Reef, Australia. PhD thesis, James Cook University.

G

Guo, Zixiao, Huang, Yelin, Chen, Yongmei, Duke, Norman C., Zhong, Cairong, and Shi, Sugua (2016) Genetic discontinuities in a dominant mangrove Rhizophora apiculata (Rhizophoraceae) in the Indo-Malesian region. Journal of Biogeography. (In Press)

Gardiner, N.M., and Jones, G.P. (2016) Habitat specialisation, site fidelity and sociality predict homing success in coral reef cardinalfish. Marine Ecology Progress Series. (In Press)

Green, Alison L., Maypa, Aileen P., Almany, Glenn R., Rhodes, Kevin L., Weeks, Rebecca, Abesamis, Rene A., Gleason, Mary G., Mumby, Peter J., and White, Alan T. (2015) Larval dispersal and movement patterns of coral reef fishes, and implications for marine reserve network design. Biological Reviews, 90 (4). pp. 1215-1247.

Gainsford, A., Van Herwerden, L., and Jones, G.P. (2015) Hierarchical behaviour, habitat use and species size differences shape evolutionary outcomes of hybridization in a coral reef fish. Journal of Evolutionary Biology, 28 (1). pp. 205-222.

Gaylord, Brian, Kroeker, Kristy J., Sunday, Jennifer M., Anderson, Kathryn M., Barry, James P., Brown, Norah E., Connell, Sean D., Dupont, Sam, Fabricius, Katharina E., Hall-Spencer, Jason M., Klinger, Terrie, Milazzo, Marco, Munday, Philip L., Russell, Bayden D., Sanford, Eric, Schreiber, Sebastian J., Thiyagarajan, Vengatesen, Vaughan, Megan L.H., Widdicombe, Steven, and Harley, Christopher D.G. (2015) Ocean acidification through the lens of ecological theory. Ecology, 96 (1). pp. 3-15.

Graham, Nicholas A.J. (2015) Phase shifts and coral reef fishes. In: Mora, Camilo, (ed.) Ecology of Fishes on Coral Reefs. Cambridge University Press, Cambridge, UK, pp. 191-198.

Graham, Nicholas A.J., Chong-Seng, Karen M., Huchery, Cindy, Januchowski-Hartley, Fraser A., and Nash, Kirsty L. (2014) Coral reef community composition in the context of disturbance history on the Great Barrier Reef, Australia. PLoS ONE, 9 (7). pp. 1-12.

Graham, Nicholas A.J. (2014) Habitat complexity: coral structural loss leads to fisheries declines. Current Biology, 24 (9). R359-R361.

Graham, Nicholas A.J., Cinner, Joshua E., Norström, Albert V., and Nyström, Magnus (2014) Coral reefs as novel ecosystems: embracing new futures. Current Opinion in Environmental Sustainability, 7. pp. 9-14.

Green, Alison L., Fernandes, Leanne, Almany, Glenn, Abesamis, Rene, McLeod, Elizabeth, Aliño, Porfirio M., White, Alan T., Salm, Rod, Tanzer, John, and Pressey, Robert L. (2014) Designing marine reserves for fisheries management, biodiversity conservation, and climate change adaptation. Coastal Management, 42 (2). pp. 143-159.

Gaither, Michelle R., Schultz, Jennifer K., Bellwood, David R., Pyle, Richard L., DiBattista, Joseph D., Rocha, Luiz A., and Bowen, Brian W. (2014) Evolution of pygmy angelfishes: recent divergences, introgression, and the usefulness of color in taxonomy. Molecular Phylogenetics and Evolution, 74. pp. 38-47.

Garren, Melissa, Son, Kwangmin, Raina, Jean-Baptiste, Rusconi, Roberto, Menolascina, Filippo, Shapiro, Orr H., Tout, Jessica, Bourne, David G., Seymour, Justin R., and Stocker, Roman (2014) A bacterial pathogen uses dimethylsulfoniopropionate as a cue to target heat-stressed corals. ISME Journal, 8. pp. 999-1007.

Goatley, Christopher Harry Robert (2013) The ecological role of sediments on coral reefs. PhD thesis, James Cook University.

Grech, A., Bos, M., Brodie, J., Coles, R., Dale, A., Gilbert, R., Hamann, M., Marsh, H., Neil, K., Pressey, R.L., Rasheed, M.A., Sheaves, M., and Smith, A. (2013) Guiding principles for the improved governance of port and shipping impacts in the Great Barrier Reef. Marine Pollution Bulletin, 75 (1). pp. 8-20.

Gardner, Caleb, and Mills, David J. (2013) Determination of moulting events in rock lobsters from pleopod clipping. PLoS ONE, 8 (8). pp. 1-9.

Graham, Nicholas A.J., Bellwood, David R., Cinner, Joshua E., Hughes, Terry P., Norström, Albert V., and Nyström, Magnus (2013) Managing resilience to reverse phase shifts in coral reefs. Frontiers in Ecology and the Environment, 11 (10). pp. 541-548.

Galaiduk, Ronen, Figueira, Will F., Kingsford, Michael J., and Curley, Belinda G. (2013) Factors driving the biogeographic distribution of two temperate Australian damselfishes and ramifications for range shifts. Marine Ecology Progress Series, 484. pp. 189-202.

Graham, N.A.J., and Nash, K.L. (2013) The importance of structural complexity in coral reef ecosystems. Coral Reefs, 32 (2). pp. 315-326.

Graham, Nicholas J., and McClanahan, Tim R. (2013) The last call for marine wilderness? BioScience, 63 (5). pp. 397-402.

Gove, Jamison M., Williams, Gareth J., McManus, Margaret A., Heron, Scott F., Sandin, Stuart A., Vetter, Oliver J., and Foley, David G. (2013) Quantifying climatological ranges and anomalies for Pacific coral reef ecosystems. PLoS ONE, 8 (4). pp. 1-14.

Gershwin, Lisa-ann, Richardson, Anthony J., Winkel, Kenneth D., Fenner, Peter J., Lippmann, John, Hore, Russell, Avila-Soria, Griselda, Brewer, David, Kloser, Rudy J., Steven, Andy, and Condie, Scott (2013) Biology and ecology of Irukandji jellyfish (Cnidaria: Cubozoa). In: Lesser, Michael, (ed.) Advances in Marine Biology. Advances in Marine Biology, 66 . Elsevier, Amsterdam, The Netherlands, pp. 1-85.

Goatley, Christopher H.R., and Bellwood, David R. (2013) Ecological consequences of sediment on high-energy coral reefs. PLoS ONE, 8 (10). pp. 1-7.

Gravel, Dominique, Poisot, Timothée, Albouy, Camille, Velez, Laure, and Mouillot, David (2013) Inferring food web structure from predator-prey body size relationships. Methods in Ecology and Evolution, 4 (11). pp. 1083-1090.

Gehrke, P., Sheaves, M., Figa, B., Boseto, D., Terry, J., Wani, J., and Ellison, J. (2012) Climate change prospects for freshwater fisheries in the tropical pacific. Water, 39 (7). pp. 81-86.

Graham, Erin Marie (2012) The energetics of scleractinian coral larvae and implications for dispersal. PhD thesis, James Cook University.

Guest, James, Baird, Andrew, Maynard, Jeffrey, Muttaqin, Efin, Edwards, Alasdair, Campbell, Stuart, Yewdall, Katie, Affendi, Yang Amri, and Chou, Loke Ming (2012) Contrasting Patterns of Coral Bleaching Susceptibility in 2010 Suggest an Adaptive Response to Thermal Stress. PLoS ONE, 7 (3). e33353- .

Glas, Martin S., Sato, Yui, Ulstrup, Karin E., and Bourne, David G. (2012) Biogeochemical conditions determine virulence of black band disease in corals. ISME Journal: multidisciplinary journal of microbial ecology, 6 (8). pp. 1526-1534.

Gordon, Matthew, and Seymour, Jamie (2012) Growth, development and temporal variation in the onset of six Chironex fleckeri medusae seasons: a contribution to understanding jellyfish ecology. PLoS One, 7 (2). pp. 1-11.

Goatley, Christopher H.R., and Bellwood, David R. (2012) Sediment suppresses herbivory across a coral reef depth gradient. Biology Letters, 8 (6). pp. 1016-1018.

Guest, J.R., Baird, A.H., Goh, B.P.L., and Chou, L.M. (2012) Sexual systems in scleractinian corals: an unusual pattern in the reef-building species Diploastrea heliopora. Coral Reefs, 31 (3). pp. 705-713.

Goatley, Christopher H.R., Hoey, Andrew S., and Bellwood, David R. (2012) The role of turtles as coral reef macroherbivores. PLoS One, 7 (6). pp. 1-7.

Guerra-Castro, E., Cruz-Motta, J.J., and Conde, J.E. (2011) Quantitative analisys of fouling diversity associated with roots of Rhizophora mangle L. in La Restinga Lagoon National Park. Interciencia, 36 (12). pp. 923-930.

Goatley, Christopher H.R., and Bellwood, David R. (2011) The roles of dimensionality, canopies and complexity in ecosystem monitoring. PLoS ONE, 6 (11). pp. 1-8.

Grutter, Alexandra S., Crean, Angela J., Curtis, Lynda M., Kuris, Armand M., Warner, Robert R., and McCormick, Mark I. (2011) Indirect effects of an ectoparasite reduce successful establishment of a damselfish at settlement. Functional Ecology, 25 (3). pp. 586-594.

Gagliano, M., Lema, A.K., Depczynski, M., and Whalan, S. (2011) Use it and lose it: lipofuscin accumulation in the midbrain of a coral reef fish. Journal of Fish Biology, 78 (2). pp. 659-666.

Graham, N.A.J., Nash, K.L., and Kool, J.T. (2011) Coral reef recovery dynamics in a changing world. Coral Reefs, 30 (2). pp. 283-294.

Graham, Nicholas A.J., Ainsworth, Tracy D., Baird, Andrew H., Ban, Natalie C., Bay, Line K., Cinner, Joshua E., De Freitas, Debora M., Diaz-Pulido, Guillermo, Dornelas, Maria, Dunn, Simon R., Fidelman, Pedro I.J., Foret, Sylvain, Good, Tatjana C., Kool, Johnathan, Mallela, Jennie, Penin, Lucie, Pratchett, Morgan S., and Williamson, David H. (2011) From microbes to people: tractable benefits of no-take areas for coral reefs. Oceanography and Marine Biology, 49. pp. 105-136.

Gaither, Michelle R., Bowen, Brian W., Bordenave, Tiane-Rae, Rocha, Luiz A., Newman, Stephen J., Gomez, Juan A., van Herwerden, Lynne, and Craig, Matthew T. (2011) Phylogeography of the reef fish Cephalopholis argus (Epinephelidae) indicates Pleistocene isolation across the indo-pacific barrier with contemporary overlap in the coral triangle. BMC Evolutionary Biology, 11. pp. 1-15.

Giri, C., Ochieng, E., Tieszen, L.L., Zhu, Z., Singh, A., Loveland, T., Masek, J., and Duke, N. (2011) Status and distribution of mangrove forests of the world using earth observation satellite data. Global Ecology and Biogeography , 20 (1). pp. 154-159.

Gates, Ruth D., and Ainsworth, Tracy D. (2011) The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 94-101.

Gardiner, N.M., and Jones, G.P. (2010) Synergistic effects of habitat preference and gregarious behaviour on habitat use in coral reef cardinalfish. Coral Reefs, 29 (4). pp. 845-856.

Gardiner, Naomi M., Munday, Philip L., and Nilsson, Göran E. (2010) Counter-gradient variation in respiratory performance of coral reef fishes at elevated temperatures. PLoS ONE, 5 (10). pp. 1-13.

Goatley, Christopher H.R., and Bellwood, David R. (2010) Biologically mediated sediment fluxes on coral reefs: sediment removal and off-reef transportation by the surgeonfish Ctenochaetus striatus. Marine Ecology Progress Series, 415. pp. 237-245.

Gardiner, Naomi Marcelle (2010) Habitat specialisation, niche overlap and site fidelity in a vulnerable family of coral reef fishes – the cardinalfish (Apogonidae). PhD thesis, James Cook University.

Graham, Nicholas, Spalding, Mark D., and Sheppard, Charles R.C. (2010) Reef shark declines in remote atolls highlight the need for multi-faceted conservation action. Aquatic Conservation: marine and freshwater ecosystems , 20 (5). pp. 543-548.

Grutter, A.S., Cribb, T.H., McCallum, H., Pickering, J.L., and Mccormick, M.I. (2010) Effects of parasites on larval and juvenile stages of the coral reef fish Pomacentrus moluccensis. Coral Reefs, 29 (1). pp. 31-40.

Goatley, Christopher H.R., Bellwood, David R., and Bellwood, Orpha (2010) Fishes on coral reefs: changing roles over the past 240 million years. Paleobiology, 36 (3). pp. 415-427.

Graham, N.A.J., Wilson, S.K., Pratchett, M.S., Polunin, N.V.C., and Spalding, M.D. (2009) Coral mortality versus structural collapse as drivers of corallivorous butterflyfish decline. Biodiversity and Conservation, 18 (12). pp. 3325-3336.

Gusmão, Luiz Felipe Mendes, and McKinnon, A. David (2009) Acrocalanus gracilis (Copepoda: Calanoida) development and production in the Timor Sea. Journal of Plankton Research, 31 (9). pp. 1089-1100.

Gusmão, Luiz Felipe Mendes, and McKinnon, A. David (2009) Sex ratios, intersexuality and sex change in copepods. Journal of Plankton Research, 31 (9). pp. 1101-1117.

Gagliano, Monica, and McCormick, Mark I. (2009) Hormonally mediated maternal effects shape offspring survival potential in stressful environments. Oecologia, 160 (4). pp. 657-665.

Graham, N.A.J., Purkis, S.J., and Harris, A. (2009) Diurnal, land-based predation on shore crabs by moray eels in the Chagos Archipelago. Coral Reefs, 28 (2). p. 397.

Gonzalez Cabello, Alonso, and Bellwood, David R. (2009) Local ecological impacts of regional biodiversity on reef fish assemblages. Journal of Biogeography, 36 (6). pp. 1129-1137.

Goatley, Christopher, and Bellwood, David R. (2009) Morphological structure in a reef fish assemblage. Coral Reefs, 28 (2). pp. 1-9.

Guenther, Jana, Wright, Anthony D., Burns, Kathryn, and de Nys, Rocky (2009) Chemical antifouling defences of sea stars: effects of the natural products hexadecanoic acid, cholesterol, lathosterol and sitosterol. Marine Ecology Progress Series, 385. pp. 137-149.

Green, Alison L., and Bellwood, David R. (2009) Monitoring Functional Groups of Herbivorous Reef Fishes as Indicators of Coral Reef Resilience: a practical guide for coral reef managers in the Asia Pacific Region. Manual. The International Union for the Conservation of Nature and Natural Resources, Gland, Switzerland.

Grutter, A.S., Pickering, J.L., McCallum, H., and McCormick, M.I. (2008) Impact of micropredatory gnathiid isopods on young coral reef fishes. Coral Reefs, 27 (3). pp. 655-661.

Gregson, M.A., Pratchett, M.S., Berumen, M.L., and Goodman, B.A. (2008) Relationships between butterflyfish (Chaetodontidae) feeding rates and coral consumption on the Great Barrier Reef. Coral Reefs, 27 (3). pp. 583-591.

Graham, E.M., Baird, A.H., and Connolly, S.R. (2008) Survival dynamics of scleractinian coral larvae and implications for dispersal. Coral Reefs, 27 (3). pp. 529-539.

Graham, Nicholas A.J., McClanahan, Timothy R., MacNeil, M. Aaron, Wilson, Shaun K., Polunin, Nicholas V.C., Jennings, Simon, Chabanet, Pascale, Clark, Susan, Spalding, Mark D., Letourneur, Yves, Bigot, Lionel, Galzin, René, Öhman, Marcus C., Garpe, Kajsa C., Edwards, Alasdair J., and Sheppard, Charles R.C. (2008) Climate warming, marine protected areas and the ocean-scale integrity of coral reef ecosystems. PLoS ONE, 3 (8). - .

Gowen, R.J., Tett, P., Kennington, K., Mills, D.K., Shammon, T.M., Stewart, B.M., Greenwood, N., Flanagan, C., Devlin, M., and Wither, A. (2008) The Irish Sea: Is it eutrophic? Estuarine, Coastal and Shelf Science , 76 (2). pp. 239-254.

Guest, J.R., Baird, A.H., Clifton, K.E., and Heyward, A.J. (2008) From molecules to moonbeams: spawning synchrony in coral reef organisms. Invertebrate Reproduction and Development, 51 (3). pp. 145-149.

Glibert, PM, Azanza, R, Burford, M, Furuya, K, Abal, E, Al-Azri, A, Al-Yamani, F, Andersen, P, Anderson, DM, Beardall, J, Berg, GM, Brand, L, Bronk, D, Brookes, J, Burkholder, J-AM, Cembella, A, Cochlan, WP, Collier, JL, Collos, Y, Diaz, D, Doblin, M, Drennen, T, Dyhrman, S, Fukuyo, Y, Furnas, M, Galloway, J, Graneli, E, Ha, DV, Hallegraeff, G, Harrison, J, Harrison, PJ, Heil, CA, Heimann, Kirsten, Howarth, R, Jauzein, C, Kana, AA, Kana, TM, Kim, H, Kudela, R, Legrand, C, Mallin, M, Mulholland, M, Murray, S, ONeil, Judith, Pitcher, G, Qi, Y, Rabalais, N, Raine, R, Seitzinger, S, Salomon, PS, Solomon, C, Stoecker, DK, Usup, G, Wilson, J, Yin, K, Zhou, M, and Zhu, M (2008) Ocean urea fertilization for carbon credits poses high ecological risks. Marine Pollution Bulletin, 56 (6). pp. 1049-1056.

Gilman, Eric L., Ellison, Joanna, Duke, Norman C., and Field, Colin (2008) Threats to mangroves from climate change and adaptation options: a review. Aquatic Botany, 89 (2). pp. 237-250.

Graham, Nicholas A.J. (2007) Ecological versatility and the decline of coral feeding fishes following climate driven coral mortality. Marine Biology, 153 (2). pp. 119-127.

Guenther, Jana, Walker-Smith, Genefor, Waren, Anders, and de Nys, Rocky (2007) Fouling-resistant surfaces of tropical sea stars. Biofouling, 23 (6). pp. 413-418.

Guenther, Jana, and de Nys, Rocky (2007) Surface microtopographies of tropical sea stars: lack of an efficient physical defence mechanism against fouling. Biofouling, 23 (6). pp. 419-429.

Guenther, Jana (2007) Natural antifouling defences of tropical sea stars. PhD thesis, James Cook University.

Graham, Nicholas A.J., McClanahan, Timothy R., Letourneur, Yves, and Galzin, Rene (2007) Anthropogenic stressors, inter-specific competition and ENSO effects on a Mauritian coral reef. Environmental Biology of Fishes, 78 (1). pp. 57-69.

Graham, Nicholas A.J., Wilson, Shaun K., Jennings, Simon, Polunin, Nicholas V.C., Robinson, Jan, Bijoux, Jude P., and Daw, Tim M. (2007) Lag effects in the impacts of mass coral bleaching on coral reef fish, fisheries, and ecosystems. Conservation Biology, 21 (5). pp. 1291-1300.

Guenther, Jana, Heimann, Kirsten, and de Nys, Rocky (2007) Pedicellariae of the crown-of-thorns sea star Acanthaster planci are not an effective defence against fouling. Marine Ecology Progress Series, 340. pp. 101-108.

Guinotte, John Michael (2006) Understanding environmental controls and predicting climate change effects on the health and occurrence of coral communities and their constituent organisms. PhD thesis, James Cook University.

Graham, Nicholas A.J., Wilson, Shaun K., Jennings, Simon, Polunin, Nicholas V.C., Bijoux, Jude P., and Robinson, Jan (2006) Dynamic fragility of oceanic coral reef ecosystems. National Academy of Sciences. Proceedings, 103 (22). pp. 8425-8429.

Game, Edward T., and Caley, M. Julian (2006) The stability of P in coral reef fishes. Evolution: international journal of organic evolution, 60 (4). pp. 814-823.

Guenther, J., and de Nys, R. (2006) Differential community development of fouling species on the pearl oysters Pinctada fucata, Pteria penguin and Pteria chinensis (Bivalvia, Pteriidae). Biofouling, 22 (3). pp. 163-171.

Gehrke, Peter, and Sheaves, Marcus (2006) Research Priorities To Sustain Coastal Fisheries Resources In The Great Barrier Reef Region: a scoping study for the Tully-Murray catchment. CSIRO, Canberra.

Gardiner, Naomi M., and Jones, Geoffrey P. (2005) Habitat specialisation and overlap in a guild of coral reef cardinalfishes (Apogonidae). Marine Ecology Progress Series, 305. pp. 163-175.

Guest, J. R., Baird, A.H., Goh, B.P.L., and Chou, L.M. (2005) Reproductive seasonality in an equatorial assemblage of scleractinian corals. Coral Reefs, 24 (1). pp. 112-116.

Graham, N.A.J., Dulvy, N.K., Jennings, S., and Polunin, N.V.C. (2005) Size spectra as indicators of fishing effects on coral reef fish assemblages. Coral Reefs, 24 (1). pp. 118-124.

Guest, J.R., Baird, A.H., Goh, B.P.L., and Chou, L.M. (2005) Seasonal reproduction in equatorial reef corals. Invertebrate Reproduction and Development, 48. - .

Gardner, L., Anderson, T., Place, A.R., Dixon, B., and Elizur, A. (2005) Sex change strategy and the aromatase genes. Journal of Steroid Biochemistry and Molecular Biology, 94 (5). pp. 395-404.

Gagliano, Monica, and McCormick, Mark I. (2004) Feeding history influences otolith shape in tropical fish. Marine Ecology Progress Series, 278. pp. 291-296.

Gristina, Michele, and Gagliano, Monica (2004) Performance of traditional rush and modern plastic traps on the capture of Palinurus elephas (Fabricius, 1787) in laboratory tanks. Fisheries Research, 67 (2). pp. 235-239.

Green, Bridget Siobhan (2004) Parental and environmental effects on the early life history of a tropical reef fish, Amphiprion melanopus. PhD thesis, James Cook University.

Guinotte, J.M., Buddemeier, R.W., and Kleypas, J.S. (2003) Future coral reef habitat marginality: temporal and spatial effects of climate change in the Pacific basin. Coral Reefs, 22 (4). pp. 551-558.

Grutter, Alexandra S., Murphy, Jan Maree, and Choat, J. Howard (2003) Cleaner fish drives local fish diversity on coral reefs. Current Biology, 13. pp. 64-67.

Gershwin, Lisa-Anne, and Zeidler, Wolfgang (2003) Encounter 2002 expedition to the isles of St Francis, South Australia: Medusae, siphonophores and ctenophores. Transactions of the Royal Society of South Australia, 127. pp. 205-241.

Green, B.S., Reilly, S.M., and McCormick, M.I. (2002) A cost-effective method of preparing larval fish otoliths for reading using enzyme digestion and staining. Journal of Fish Biology, 61 (6). pp. 1600-1605.

Gust, Nick, Choat, J. Howard, and Mccormick, Mark I. (2001) Spatial variability in reef fish distribution, abundance, size and biomass : a multi-scale analysis. Marine Ecology Progress Series, 214. pp. 237-251.

Green, Bridget S., and Mccormick, Mark I. (2001) Ontogeny of the digestive and feeding systems in the anemonefish Amphiprion melanopus. Environmental Biology of Fishes, 61 (1). pp. 73-83.

Grutter, Alexandra S. (2000) Ontogenetic variation in the diet of the cleaner fish Labroides dimidiatus and its ecological consequences. Marine Ecology-Progress Series, 197. pp. 241-246.

Grutter, Alexandra S. (1995) Relationship between cleaning rates and ectoparasite loads in coral reef fishes. Marine Ecology Progress Series, 118. pp. 51-58.

Grutter, Alexandra S. (1995) Comparison of methods for sampling ectoparasites from coral reef fishes. Marine and Freshwater Research, 46 (6). pp. 897-903.

Grutter, Alexandra S. (1994) Spatial and temporal variations of the ectoparasites of seven reef fish species from Lizard Island and Heron Island, Australia. Marine Ecology Progress Series, 115. pp. 21-30.

Grutter, Alexandra Sara (1994) Parasites in the cleaning interactions between Labroides dimidiatus and fish. PhD thesis, James Cook University.

Green, Alison Lesley (1994) The early life history of labroid fishes at Lizard Island, Northern Great Barrier Reef. PhD thesis, James Cook University.

Gyuris, Emma (1993) Insights into the ecology of hatchlings of the green turtle, Chelonia mydas: implications for the life histories of the marine turtles. PhD thesis, James Cook University.

H

Heinrich, Dennis D.U., Watson, Sue-Ann, Rummer, Jodie L., Brandl, Simon J., Simpfendorfer, Colin A., Heupel, Michelle R., and Munday, Philip L. (2016) Foraging behaviour of the epaulette shark Hemiscyllium ocellatum is not affected by elevated CO2. ICES Journal of Marine Science, 73 (3). pp. 633-640.

Huveneers, Charlie, Simpfendorfer, Colin A., Kim, Susan, Semmens, Jayson M., Hobday, Alistair J., Pederson, Hugh, Stieglitz, Thomas, Vallee, Richard, Webber, Dale, Heupel, Michelle R., Peddemors, Vic, and Harcourt, Robert G. (2016) The influence of environmental parameters on the performance and detection range of acoustic receivers. Methods in Ecology and Evolution, 7 (7). pp. 825-835.

Head, Catherine E.I., Bonsall, Michael B., Koldewey, Heather, Pratchett, Morgan S., Speight, Martin, and Rogers, Alex D. (2015) High prevalence of obligate coral-dwelling decapods on dead corals in the Chagos Archipelago, central Indian Ocean. Coral Reefs, 34 (3). pp. 905-915.

Harrison, Hugo B., Saenz-Agudelo, Pablo, Al-Salamah, Manalle, Messmer, Vanessa, Pratchett, Morgan S., and Berumen, Michael L. (2015) Microsatellite multiplex assay for the coral-eating crown-of-thorns starfish, Acanthaster cf. planci. Conservation Genetics Resources, 7 (3). pp. 627-630.

Hall, April Elizabeth (2015) Top-down control, trophic interactions, and the importance of predatory fishes on coral reefs. PhD thesis, James Cook University.

Heintz, T., Haapkylä, J., and Gilbert, A. (2015) Coral health on reefs near mining sites in New Caledonia. Diseases of Aquatic Organisms, 115 (2). pp. 165-173.

Hobbs, Jean-Paul A., Frisch, Ashley J., Newman, Stephen J., and Wakefield, Corey B. (2015) Selective impact of disease on coral communities: outbreak of white syndrome causes significant total mortality of Acropora plate corals. PLoS ONE, 10 (7). pp. 1-15.

Hall, N.M., Berry, K.L.E., Rintoul, L., and Hoogenboom, M.O. (2015) Microplastic ingestion by scleractinian corals. Marine Biology, 162 (3). pp. 725-732.

Hoogenboom, Mia, Rottier, Cécile, Sikorski, Severine, and Ferrier-Pagés, Christine (2015) Among-species variation in the energy budgets of reef-building corals: scaling from coral polyps to communities. Journal of Experimental Biology, 218 (24). pp. 3866-3877.

Heupel, Michelle R., Simpfendorfer, Colin A., Espinoza, Mario, Smoothey, Amy F., Tobin, Andrew, and Peddemors, Victor (2015) Conservation challenges of sharks with continental scale migrations. Frontiers in Marine Science, 2 (12). pp. 1-7.

Humanes, A., and Bastidas, C. (2015) In situ settlement rates and early survivorship of hard corals: a good year for a Caribbean reef. Marine Ecology Progress Series, 539. pp. 139-151.

Heupel, M.R., and Simpfendorfer, C.A. (2015) Long-term movement patterns of a coral reef predator. Coral Reefs, 34 (2). pp. 679-691.

Holbrook, Sally J., Schmitt, Russell J., Messmer, Vanessa, Brooks, Andrew J., Srinivasan, Maya, Munday, Philip L., and Jones, Geoffrey P. (2015) Reef fishes in biodiversity hotspots are at greatest risk from loss of coral species. PLoS One, 10 (5). pp. 1-12.

Haapkylä , J., Melbourne-Thomas, J., and Flavell, M. (2015) The association between coral communities and disease assemblages in the Wakatobi Marine National Park, south-eastern Sulawesi, Indonesia. Marine and Freshwater Research, 66 (10). pp. 948-955.

Hayward, David C., Grasso, Lauretta C., Saint, Robert, Miller, David J., and Ball, Eldon E. (2015) The organizer in evolution–gastrulation and organizer gene expression highlight the importance of Brachyury during development of the coral, Acropora millepora. Developmental Biology, 399 (2). pp. 337-347.

Hughes, Terry P., Bellwood, David R., Connolly, Sean R., Cornell, Howard V., and Karlson, Ronald H. (2014) Double jeopardy and global extinction risk in corals and reef fishes. Current Biology, 24 (24). pp. 2946-2951.

Hutchinson, Neil, Jenkins, Gregory P., Brown, Andrew, and Smith, Timothy M. (2014) Variation with depth in temperate seagrass-associated fish assemblages in Southern Victoria, Australia. Estuaries and Coasts, 37 (4). pp. 801-814.

Hobbs, J.-P.A., Frisch, A.J., Mutz, S., and Ford, B.M. (2014) Evaluating the effectiveness of teeth and dorsal fin spines for non-lethal age estimation of a tropical reef fish, coral trout Plectropomus leopardus. Journal of Fish Biology, 84 (2). pp. 328-338.

Hobbs, Jean-Paul A., Newman, Stephen J., Mitsopoulos, Gabby E.A., Travers, Michael J., Skepper, Craig L., Gilligan, Justin J., Allen, Gerald R., Choat, Howard J., and Ayling, Anthony M. (2014) Checklist and new records of Christmas Island fishes: the influence of isolation, biogeography and habitat availability on species abundance and community composition. Raffles Bulletin of Zoology, Supplement No. 30. pp. 184-202.

Hobbs, Jean-Paul A., Newman, Stephen J., Mitsopoulos, Gabby E.A., Travers, Michael J., Skepper, Craig L., Gilligan, Justin J., Allen, Gerald R., Choat, Howard J., and Ayling, Anthony M. (2014) Fishes of the Cocos (Keeling) Islands: new records, community composition and biogeographic significance. Raffles Bulletin of Zoology: an international journal of Southeast Asian Zoology, Supplement 30. pp. 203-219.

Hobbs, Jean-Paul A., van Herwerden, Lynne, Pratchett, Morgan S., and Allen, Gerald R. (2014) Hybridisation among butterflyfishes. In: Pratchett , Morgan S., Berumen , Michael L., and Kapoor , B.G., (eds.) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA, pp. 48-69.

Hsu, Chia-Min, de Palmas, Stéphane, Kuo, Chao-Yang, Denis, Vianney, and Chen, Chaolun Allen (2014) Identification of Scleractinian coral recruits using fluorescent censusing and DNA barcoding techniques. PLoS One, 9 (9). e107366-e107366.

Heupel, M.R., and Simpfendorfer, C.A. (2014) Importance of environmental and biological drivers in the presence and space use of a reef-associated shark. Marine Ecology Progress Series, 496. pp. 47-57.

Harris, Alasdair, Wilson, Shaun, Graham, Nicholas, and Sheppard, Charles (2014) Scleractinian coral communities of the inner Seychelles 10 years after the 1998 mortality event. Aquatic Conservation: marine and freshwater ecosystems , 24 (5). pp. 667-679.

Heupel, Michelle R., Knip, Danielle M., Simpfendorfer, Colin A., and Dulvy, Nicholas K. (2014) Sizing up the ecological role of sharks as predators. Marine Ecology Progress Series, 495. pp. 291-298.

Huang, Danwei, Benzoni, Francesca, Arrigoni, Roberto, Baird, Andrew H., Berumen, Michael, Bouwmeester, Jessica, Chou, Loke Ming, Fukami, Hironobu, Licuanan, Wilfredo Y., Lovell, Edward R., Meier, Rudolf, Todd, Peter A., and Budd, Ann F. (2014) Towards a phylogenetic classification of reef corals: the Indo-Pacific genera Merulina, Goniastrea and Scapophyllia (Scleractinia, Merulinidae). Zoologica Scripta, 43 (5). pp. 531-548.

Heinrich, Dennis D.U., Rummer, Jodie L., Morash, Andrea J., Watson, Sue-Ann, Simpfendorfer, Colin, Heupel, Michelle R., and Munday, Philip L. (2014) A product of its environment: the epaulette shark (Hemiscyllium ocellatum) exhibits physiological tolerance to elevated environmental CO(2). Conservation Physiology, 2. pp. 1-12.

Hoey, A.S., Brandl, S.J., and Bellwood, D.R. (2013) Diet and cross-shelf distribution of rabbitfishes (f. Siganidae) on the northern Great Barrier Reef: implications for ecosystem function. Coral Reefs, 32 (4). pp. 973-984.

Harrison, Hugo B., Saenz-Agudelo, Pablo, Planes, Serge, Jones, Geoffrey P., and Berumen, Michael L. (2013) On minimizing assignment errors and the trade-off between false positives and negatives in parentage analysis. Molecular Ecology, 22 (23). pp. 5738-5742.

Haapkylä, J., Melbourne-Thomas, J., Flavell, M., and Willis, B.L. (2013) Disease outbreaks, bleaching and a cyclone drive changes in coral assemblages on an inshore reef of the Great Barrier Reef. Coral Reefs, 32 (3). pp. 815-824.

Hobbs, Jean-Paul A., Frisch, Ashley J., Ford, Benjamin M., Thums, Michele, Saenz-Agudelo, Pablo, Furby, Kathryn A., and Berumen, Michael L. (2013) Taxonomic, spatial and temporal patterns of bleaching in anemones inhabited by anemonefishes. PLoS ONE, 8 (8). pp. 1-12.

Hartley, Fraser Andrew (2013) Fear of fishers: anti-predator behaviour of coral reef fish and its relevance to fisheries management and conservation. PhD thesis, James Cook University.

Hughes, Terry P., Connolly, Sean R., and Keith, Sally A. (2013) Geographic ranges of reef corals (Cnidaria: Anthozoa: Scleractinia) in the Indo-Pacific. Ecology, 94 (7). p. 1659.

Howells, Emily J., Berkelmans, Ray, van Oppen, Madeleine J.H., Willis, Bette L., and Bay, Line K. (2013) Historical thermal regimes define limits to coral acclimatization. Ecology, 94 (5). pp. 1078-1088.

Hopf, Jessica, and Kingsford, Michael (2013) The utility of statoliths and bell size to elucidate age and condition of a scyphomedusa (Cassiopea sp.). Marine Biology, 160 (4). pp. 951-960.

Harris, Peter T., Bridge, Thomas C.L., Beaman, Robin J., Webster, Jody M., Nichol, Scott L., and Brooke, Brendan P. (2013) Submerged banks in the Great Barrier Reef, Australia, greatly increase available coral reef habitat. ICES Journal of Marine Science, 70 (2). pp. 284-293.

Harrison, Hugo B., Saenz-Agudelo, Pablo, Planes, Serge, Jones, Geoffrey P., and Berumen, Michael L. (2013) Relative accuracy of three common methods of parentage analysis in natural populations. Molecular Ecology, 22 (4). pp. 1158-1170.

Hanson, N.N., Wurster, C.M., and Todd, C.D. (2013) Reconstructing marine life-history strategies of wild Atlantic salmon from the stable isotope composition of otoliths. Marine Ecology Progress Series, 475. pp. 249-266.

Heupel, Michelle R., Simpfendorfer, Colin A., Olsen, Esben M., and Moland, Even (2012) Consistent movement traits indicative of innate behavior in neonate sharks. Journal of Experimental Marine Biology and Ecology, 432-433. pp. 131-137.

Harrison, Hugo B. (2012) Genetic parentage analysis as a tool for measuring larval connectivity in a network of marine reserves. PhD thesis, James Cook University.

Hughes, Terry P., Baird, Andrew H., Dinsdale, Elizabeth A., Moltschaniwskyj, Natalie A., Pratchett, Morgan S., Tanner, Jason E., and Willis, Bette L. (2012) Assembly rules of reef corals are flexible along a steep climatic gradient. Current Biology, 22 (8). pp. 736-741.

Hobbs, Jean-Paul A., Jones, Geoffrey P., Munday, Philip L., Connolly, Sean R., and Srinivasan, Maya (2012) Biogeography and the structure of coral reef fish communities on isolated islands. Journal of Biogeography, 39 (1). pp. 130-139.

Harry, A.V., Morgan, J.A.T., Ovenden, J.R., Tobin, A.J., Welch, D.J., and Simpfendorfer, C.A. (2012) Comparison of the reproductive ecology of two sympatric blacktip sharks (Carcharhinus limbatus and Carcharhinus tilstoni) off north-eastern Australia with species identification inferred from vertebral counts. Journal of Fish Biology, 81 (4). pp. 1-9.

Howard, William R., Nash, Merinda, Anthony, Kenneth, Schmutter, Katherine, Bostock, Helen, Bromhead, Donald, Byrne, Maria, Currie, Kim, Diaz-Pulido, Guillermo, Eggins, Stephen, Ellwood, Michael, Eyre, Bradley, Haese, Ralf, Hallegraeff, Gustaaf, Hill, Katy, Hurd, Catriona, Law, Cliff, Lenton, Andrew, Matear, Richard, McNeil, Ben, McCulloch, Malcolm, Muller, Marius N., Munday, Philip, Opdyke, Bradley, Pandolfi, John M., Richards, Russell, Roberts, Donna, Russell, Bayden D., Smith, Abigail M., Tilbrook, Bronte, Waite, Anya, and Williamson, Jane (2012) Ocean acidification. In: Poloczanska, E.S., Hobday, A.J., and Richardson, A.J., (eds.) A Marine Climate Change Impacts and Adaptation Report Card for Australia. CSIRO Marine and Atmospheric Research, Brisbane, QLD, pp. 113-150.

Hussey, N.E., MacNeil, M.A., Olin, J. A., McMeans, B. C., Kinney, Michael, Chapman, D. D., and Fisk, A. T. (2012) Stable isotopes and elasmobranchs: tissue types, methods, applications and assumptions. Journal of Fish Biology, 80 (5). pp. 1449-1484.

Hsu, Chia-Min, Keshavmurthy, Shashank, Denis, Vianney, Kuo, Chao-Yang, Wang, Jih-Terng, Meng, Pei-Jie, and Chen, Chaolun Allen (2012) Temporal and Spatial Variations in spatial variations in symbiont communities of catch bowl coral Isopora palifera (Scleractinia: Acroporidae) on reefs in Kenting National Park, Taiwan. Zoological Studies, 51 (8). pp. 1343-1353.

Hoey, Andrew, Bellwood, David R., and Barnett, Adam (2012) To feed or to breed: morphological constraints of mouthbrooding in coral reef cardinalfishes. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1737). pp. 2426-2432.

Haapkylä, Jessica (2011) Dynamics and drivers of coral disease on Indo-Pacific reefs. PhD thesis, James Cook University.

Hemery, L.G., Galton-Fenzi, B., Améziane, N., Riddle, M.J., Rintoul, S.R., Beaman, R.J., Post, A.L., and Eléaume, M. (2011) Predicting habitat preferences for Anthometrina adriani (Echinodermata) on the East Antarctic continental shelf. Marine Ecology Progress Series, 441. pp. 105-116.

Hoogenboom, M.O., Connolly, S.R., and Anthony, K.R.N. (2011) Biotic and abiotic correlates of tissue quality for common scleractinian corals. Marine Ecology Progress Series, 438. pp. 119-128.

Hobbs, J-P. A., Jones, G.P., and Munday, P.L. (2011) Extinction risk in endemic marine fishes. Conservation Biology, 25 (5). pp. 1053-1055.

Hsieh, Hernyi J., Chen, Koa-Song, Lin , Yihan I., Huang , Yuanchao A., Baird, Andrew H., Tsai , Wan-Sen, Su, Wei-Cheng, and Chen, Chaolun A. (2011) Establishment of a No-take area (NTA) could not guarantee the preservation of coral communities in Chinwan Inner Bay, Penghu, Taiwan. Zoological Studies, 50 (4). pp. 443-453.

Heupel, Michelle R., and Simpfendorfer, Colin A. (2011) Estuarine nursery areas provide a low-mortality environment for young bull sharks Carcharhinus leucas. Marine Ecology Progress Series, 433. pp. 237-244.

Heupel, Michelle R., Knip, Danielle M., de Lestang, Paul, Allsop, Quentin A., and Grace, Blair S. (2011) Short-term movement of barramundi in a seasonally closed freshwater habitat. Aquatic Biology, 12 (2). pp. 147-155.

Hobbs, Jean-Paul A. (2011) Reef fishes on isolated islands: community structure, endemism and extinction. PhD thesis, James Cook University.

Holmes, Thomas H., and McCormick, Mark I. (2011) Response across a gradient: behavioural reactions of newly settled fish to predation cues. Animal Behaviour, 81 (3). pp. 543-550.

Hoey, Andrew S., and Bellwood, David R. (2011) Suppression of herbivory by macroalgal density: a critical feedback on coral reefs? Ecology Letters, 14 (3). pp. 267-273.

Huang, Y.-C.A., Hsieh, H.J., Huang, S.-C., Meng, P.-J., Chen, Y.-S., Keshavmurthy, S., Nozawa, Y., and Chen, C.A. (2011) Nutrient enrichment caused by marine cage culture and its influence on subtropical coral communities in turbid waters. Marine Ecology Progress Series, 423. pp. 83-93.

Haapkylä, Jessica, Unsworth, Richard K.F., Flavell, Mike, Bourne, David G., Schaffelke, Britta, and Willis, Bette L. (2011) Seasonal rainfall and runoff promote coral disease on an inshore reef. PLoS ONE, 6 (2). pp. 1-10.

Hughes, Terry (2011) The future of marine governance. Solutions, 2 (1). pp. 1-3.

Huang, Danwei, Licuanan, Wilfredo Y., Baird, Andrew H. , and Fukami, Hironobu (2011) Cleaning up the 'Bigmessidae': molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae. BMC Evolutionary Biology, 11. pp. 1-13.

Herler, Juergen, Munday, Philip L., and Hernaman, Vanessa (2011) Gobies on coral reefs. In: Patzner, Robert A., Van Tassel, James L., Kovacic, Marcelo, and Kapoor, B.G., (eds.) The Biology of Gobies. Science Publishers, Boca Raton, FL, pp. 493-529.

Hoey, Andrew, Pratchett, Morgan, and Cvitanovic, Christopher (2011) High macroalgal cover and low coral recruitment undermines the potential resilience of the world's southernmost coral reef assemblages. PLoS ONE, 6 (10). e25824.

Hughes, T.P., Bellwood, D.R., Baird, A.H., Brodie, J., Bruno, J.F., and Pandolfi, J.M. (2011) Shifting base-lines, declining coral cover, and the erosion of reef resilience: comment on Sweatman et al. (2011). Coral Reefs, 30 (3). pp. 653-660.

Hoegh-Guldberg, Ove, Andréfouët, Serge, Fabricius, Katharina E., Diaz-Pulido, Guillermo, Lough, Janice M., Marshall, Paul A., and Pratchett, Morgan S. (2011) Vulnerability of coral reefs in the tropical Pacific to climate change. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, Noumea, New Caledonia, pp. 251-296.

Hughes, Terry P., Graham, Nicholas A.J., Jackson, Jeremy B.C., Mumby, Peter J., and Steneck, Robert S. (2010) Rising to the challenge of sustaining coral reef resilience. Trends in Ecology & Evolution, 25 (11). pp. 633-642.

Hobbs, J.-P. A., and McDonald, C.A. (2010) Increased seawater temperature and decreased dissolved oxygen triggers fish kill at the Cocos (Keeling) Islands, Indian Ocean. Journal of Fish Biology, 77 (6). pp. 1219-1229.

Hanson, N.N., Wurster, C.M., EIMF, , and Todd, C.D. (2010) Comparison of secondary ion mass spectrometry and micromilling/continuous flow isotope ratio mass spectrometry techniques used to acquire intra-otolith δ18O values of wild Atlantic salmon (Salmo salar). Rapid Communications in Mass Spectrometry, 24 (17). pp. 2491-2498.

Hoey, A.S., and Bellwood, D.R. (2010) Cross-shelf variation in browsing intensity on the Great Barrier Reef. Coral Reefs, 29 (2). pp. 499-508.

Hutchinson, N., and Rhodes, K.L. (2010) Home range estimates for squaretail coralgrouper, Plectropomus areolatus (Rüppell 1830). Coral Reefs, 29 (2). pp. 511-519.

Hoey, Andrew Scott (2010) The ecosystem role of macroalgal browsing fishes on coral reefs. PhD thesis, James Cook University.

Hutchinson, Neil, Hunt, Taylor, and Morris, Liz (2010) Seagrass and Reef Program for Port Phillip Bay: temperate reefs literature review. Report. Victorian Department of Primary Industries, Melbourne, VIC, Australia.

Hobbs, Jean-Paul A., Ayling, Anthony, Choat, J. Howard, Gilligan, Justin J., McDonald, Christian A., Neilson, Joseph, and Newman, Stephen J. (2010) New records of marine fishes illustrate the biogeographic importance of Christmas Island, Indian Ocean. Zootaxa, 2422. pp. 63-68.

Hoey, A.S., and Bellwood, D.R. (2010) Damselfish territories as a refuge for macroalgae on coral reefs. Coral Reefs, 29 (1). pp. 107-118.

Hanafy, M.H., Aamer, M.A., Habib, M., Rouphael, Anthony B., and Baird, Andrew H. (2010) Synchronous reproduction of corals in the Red Sea. Coral Reefs, 29 (1). pp. 119-124.

Hobbs, Jean-Paul, and Frisch, Ashley J. (2010) Coral disease in the Indian Ocean: taxonomic susceptibility, spatial distribution and the role of host density on the prevalence of white syndrome. Diseases of Aquatic Organisms, 89 (1). pp. 1-8.

Halford, Andrew Robert (2010) Disturbance effects on tropical reef fish assemblages at large spatial and temporal scales. PhD thesis, James Cook University.

Holmes, Thomas H., and McCormick, Mark I. (2010) Size-selectivity of predatory reef fish on juvenile prey. Marine Ecology Progress Series, 399. pp. 273-283.

Hoey, Andrew, and Bellwood, David (2010) Among-habitat variation in herbivory on Sargassum spp. on a mid-shelf reef in the northern Great Barrier Reef. Marine Biology, 157 (1). pp. 189-200.

Hamann, M., Godfrey, M.H., Seminoff, J.A., Arthur, K., Barata, P.C.R., Bjorndal, K.A., Bolten, A.B., Broderick, A.C., Campbell, L.M., Carreras, C., Casale, P., Chaloupka, M., Chan, S.K.F, Coyne, M.S., Crowder, L.B., Diez, C.E., Dutton, P.H., Epperly, S.P., FitzSimmons, N.N., Formia, A., Girondot, M., Hays, G.C., Cheng, I.J., Kaska, Y., Lewison, R., Mortimer, J.A., Nichols, W.J., Reina, R.D., Shanker, K., Spotila, J.R., Tomás, J., Wallace, B.P., Work, T.M., Zbinden, J., and Godley, B.J. (2010) Global research priorities for sea turtles: informing management and conservation in the 21st century. Endangered Species Research, 11 (3). pp. 245-269.

Hobbs, Jean-Paul A,, Jones, G.P., and Munday, P.L. (2010) Rarity and extinction risk in coral reef angelfishes on isolated islands: interrelationships among abundance, geographic range size and specialisation. Coral Reefs, 29 (1). pp. 1-11.

Hazevoet, Cornelis J., Monteiro, Vanda, López, Pedro, Varo, Nuria, Torda, Gergely, Berrow, Simon, and Gravanita, Barbara (2010) Recent data on whales and dolphins (Mammalia: Cetacea) from the Cape Verde Islands, including records of four taxa new to the archipelago. Zoologia Caboverdiana, 1 (2). pp. 75-99.

Hoey, A.S. (2010) Size matters: macroalgal height influences the feeding response of coral reef herbivores. Marine Ecology Progress Series, 411. pp. 299-302.

Holmes, Thomas H., and McCormick, Mark I. (2010) Smell, learn and live: the role of chemical alarm cues in predator learning during early life history in a marine fish. Behavioural Processes, 83 (3). pp. 299-305.

Haapkylä, J., Melbourne-Thomas, J., Flavell, M., and Willis, B.L. (2010) Spatiotemporal patterns of coral disease prevalence on Heron Island, Great Barrier Reef, Australia. Coral Reefs, 29 (4). pp. 1035-1045.

Herdiana, Yudi, Campbell, Stuart, and Baird, Andrew (2010) Systematic marine conservation planning: towards a marine representative areas network in Nanggruh Aceh Darussalam, Indonesia. In: Proceedings of the 11th International Coral Reef Symposium, pp. 1112-1115. From: 11th International Coral Reef Symposium, 07 - 11 July 2008, Fort Lauderdale, FL, USA.

Hoey, Andrew S., and Bellwood, David R. (2009) Limited functional redundancy in a high diversity system: single species dominates key ecological process on coral reefs. Ecosystems, 12 (8). pp. 1316-1328.

Hobbs, J-P.A., Frisch, A.J., Hamanaka, T., McDonald, C.A., Gilligan, J.J., and Neilson, J. (2009) Seasonal aggregation of juvenile whale sharks (Rhincodon typus) at Christmas Island, Indian Ocean. Coral Reefs, 28 (3). p. 577.

Hughes, A. Randall, Williams, Susan L., Duarte, Carlos M., Heck Jr, Kenneth L., and Waycott, Michelle (2009) Associations of concern: declining seagrasses and threatened dependent species. Frontiers in Ecology and the Environment, 7 (5). pp. 242-246.

Hobbs, Jean-Paul A., Frisch, Ashley J., Allen, Gerald R., and van Herwerden, Lynne (2009) Marine hybrid hotspot at Indo-Pacific biogeographic border. Biology Letters, 5 (2). pp. 258-261.

Hoogenboom, Mia O., and Connolly, Sean R. (2009) Defining fundamental niche dimensions of corals: synergistic effects of colony size, light, and flow. Ecology, 90 (3). pp. 767-780.

Howells, E.J., van Oppen, M.J.H., and Willis, B.L. (2009) High genetic differentiation and cross-shelf patterns of genetic diversity among Great Barrier Reef populations of Symbiodinium. Coral Reefs, 28 (1). pp. 215-225.

Holmes, Thomas H., and McCormick, Mark I. (2009) Influence of prey body characteristics and performance on predator selection. Oecologia, 159 (2). pp. 401-413.

Haapkyla, Jessica, Seymour, Adrian S., Barneah, Orit, Brickner, Itzchak, Hennige, Sebastian, Suggett, David, and Smith, David (2009) Association of Waminoa sp. (Acoela) with corals in the Wakatobi Marine Park, South-East Sulawesi, Indonesia. Marine Biology, 156. pp. 1021-1027.

Hanson, N.N., Wurster, C.M., Bird, M.I., and Boyd, I.L. (2009) Intrinsic and extrinsic forcing in life histories: patterns of growth and stable isotopes in male Antarctic fur seal teeth. Marine Ecology Progress Series, 388. pp. 263-272.

Howard, W., de Salas, M, Cheal, A., Lough, J., McKinnon, D., Meekan, M., Sweatman, H., Coleman, M., Chambers, L., Dunlop, N., Church, J., Dowdney, J., Feng, M., Griffiths, S., Hemer, M., Hobday, A., Mapstone, B., Matear, R., Poloczanska, E., Richardson, A., Ridgway, K., Risbey, J., Thompson, P., Thresher, R., Weller, E., Saintilan, N., Wilson, S., Lenanton, R., Hosja, W., Moore, P., Wernberg, T., Marshall, P., Connolly, R., McDonald, J., Hill, K., Congdon, B, Devney, C., Fuentes, M., Graham, N., Hamann, M., Hughes, T., Kingsford, M., Munday, P., Pratchett, M., Sheaves, M., Goodwin, I., Raftos, D., Williamson, J., Beardall, J., Brett, S., Waschka, M., Dann, P., Ward, T., Edgar, G., Swadling, K., Connell, S., Russell, B., Lukoschek, V., Havenhand, J., McGregor, S., Jenkins, G., Campbell, A., Steinberg, P., Anthony, K., Lovelock, C., Skilleter, G., Figueira, W., Davidson, J., Hallegraeff, G., Holbrook, N., Booth, D., Doblin, M., Kendrick, G., Smale, D., Parker, L., and Ross, P. (2009) Marine Climate Change in Australia: impacts and adaptation responses: 2009 report card. Report. National Climate Change Adaptation Research Facility (NCCARF).

Hughes, Terry P. (2009) Seascape patterns and dynamics of coral reefs. In: Levin, Simon A., (ed.) The Princeton Guide to Ecology. Princeton University Press, Princeton, New Jersey, USA, pp. 482-487.

Haapkyla, Jessica, Unsworth, Richard K.F., Seymour, Adrian S., Melbourne-Thomas, Jessica, Flavell, Mike, Willis, Bette L., and Smith, David J. (2009) Spatio-temporal coral disease dynamics in the Wakatobi Marine National Park, South-East Sulawesi, Indonesia. Diseases of Aquatic Organisms, 87 (1-2). pp. 105-115.

Horne, John B., van Herwerden, Lynne, Choat, J. Howard, and Robertson, D.R. (2008) High population connectivity across the Indo-Pacific: congruent lack of phylogeographic structure in three reef fish congeners. Molecular Phylogenetics and Evolution, 49 (2). pp. 629-638.

Heupel, Michelle R., Reiss, Katie. L., Yeiser, Beau G., and Simpfendorfer, Colin A. (2008) Effects of biofouling on performance of moored data logging acoustic receivers. Limnology and Oceanography: Methods, 6. pp. 327-335.

Hoogenboom, Mia O., Connolly, Sean R., and Anthony, Kenneth R.N. (2008) Interactions between morphological and physiological plasticity optimize energy acquisition in corals. Ecology, 89 (4). pp. 1144-1154.

Hoey, A. S., and Bellwood, D. R. (2008) Cross-shelf variation in the role of parrotfishes on the Great Barrier Reef. Coral Reefs, 27 (1). pp. 37-47.

Hamilton, R.J., Adams, S., and Choat, J.H. (2008) Sexual development and reproductive demography of the green humphead parrotfish (Bolbometopon muricatum) in the Solomon Islands. Coral Reefs, 27 (1). pp. 153-163.

Harold, Antony S., Winterbottom, Richard, Munday, Philip L., and Chapman, Robert W. (2008) Phylogenetic relationships of Indo-Pacific coral gobies of the genus Gobiodon (Teleostei: Gobiidae) based on morphological and molecular data. Bulletin of Marine Science, 82 (1). pp. 119-136.

Hueter, Robert E., and Simpfendorfer, Colin A. (2008) Case study: trends in blue shark abundance in the western north Atlantic as determined by a fishery-independent survey. In: Camhi, Merry D., Pikitch, Ellen K., and Babcock, Elizabeth A., (eds.) Sharks of the Open Ocean: biology, fisheries & conservation. Blackwell Publishing, Oxford, UK, pp. 236-241.

Hobbs, J.-P.A, and Salmond, J.K. (2008) Cohabitation of Indian and Pacific Ocean species at Christmas and Cocos (Keeling) Islands. Coral Reefs, 27 (4). p. 933.

Heupel, M.R., Williams, A.J., Welch, D.J., Mapstone, B.D., Ballagh, A., and Simpfendorfer, C.A. (2008) Compilation of information on the interaction of reef sharks with the reef line fishery in the Great Barrier Reef Marine Park: final report to the Great Barrier Reef Marine Park Authority. Report. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia.

Harvell, C.D., Woodley, C., Raymundo, L., and Sato, Y. (2008) Detecting and assessing outbreaks. In: Raymundo, Laurie J., Couch, Courtney S., and Harvell, C. Drew, (eds.) Coral Disease Handbook: guidelines for assessment monitoring and management. Coral Reef Targeted Research and Capacity Building for Management Program, pp. 65-74.

Hughes, T.P. (2008) Human impact on coral reefs. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 85-94.

Heupel, Michelle R., and Simpfendorfer, Colin A. (2008) Movement and distribution of young bull sharks Carcharhinus leucas in a variable estuarine environment. Aquatic Biology, 1. pp. 277-289.

Heatwole, H., and Lukoschek, V. (2008) Reptiles. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 342-348.

Hobbs, J.P., Choat, J.H., Robbins, W.D., Van Herwerden, Lynne, Feary, D.A., and Ayling, Anthony (2008) Unique fish assemblages at world's southernmost oceanic coral reefs, Elizabeth and Middleton Reefs, Tasman Sea, Australia. Coral Reefs, 27 (1). p. 15.

Hoegh-Guldberg, Ove, Hughes, Terry, Marsh, Helene, Pandolfi, John, and Possingham, Hugh (2008) Urgent need for improved protection of the Coral Sea. In: Zethovan, Imogen, (ed.) An Australian Coral Sea Heritage Park. Pew Charitable Trusts, Philadelphia, USA, pp. 11-13.

Hamann, Mark, Jessop, Tim S., and Schäuble, Chloe S. (2007) Fuel use and corticosterone dynamics in hatchling green sea turtles (Chelonia mydas) during natal dispersal. Journal of Experimental Marine Biology and Ecology, 353 (1). pp. 13-21.

Heupel, Michelle (2007) Exiting Terra Ceia Bay: examination of cues stimulating migration from a summer nursery area. In: McCandless, Camilla T., Kohler, Nancy E., and Pratt Jr., Harold L., (eds.) Shark Nursery Grounds of the Gulf of Mexico and the East Coast Waters of the United States. American Fisheries Society, Bethesda MD, pp. 265-280.

Hughes, Terence P., Gunderson, Lance H., Folke, Carl, Baird, Andrew H., Bellwood, David, Berkes, Fikret, Crona, Beatrice, Helfgott, Ariella, Leslie, Heather, Norberg, Jon, Nyström, Marcus, Olsson, Per, Österblom, Henrik, Scheffer, Marten, Schuttenberg, Heidi, Steneck, Robert S., Tengo, Maria, Troell, Max, Walker, Brian, Wilson, James, and Worm, Boris (2007) Adaptive management of the Great Barrier Reef and the Grand Canyon World Heritage Areas. Ambio, 36 (7). pp. 586-592.

Hemmrich, Georg, Miller, David J., and Bosch, Thomas C.G. (2007) The evolution of immunity: a low-life perspective. Trends in Immunology, 28 (10). pp. 449-454.

Hernaman, V., and Munday, P.L. (2007) Evolution of mating systems in coral reef gobies and constraints on mating system plasticity. Coral Reefs, 26 (3). pp. 585-595.

Hoey, J., McCormick, M.I., and Hoey, A.S. (2007) Influence of depth on sex-specific energy allocation patterns in a tropical reef fish. Coral Reefs, 26 (3). pp. 603-613.

Heupel, M.R., and Bennett, M.B. (2007) Estimating abundance of reef-dwelling sharks: a case study of the epaulette Shark, Hemiscyllium ocellatum (Elasmobranchii: Hemiscyllidae). Pacific Science, 61 (3). pp. 383-394.

Heupel, Michelle R., Carlson, John K., and Simpfendorfer, Colin A. (2007) Shark nursery areas: concepts, definition, characterization and assumptions. Marine Ecology Progress Series, 337. pp. 287-297.

Hughes, Terence P., Rodrigues, Maria J., Bellwood, David R., Ceccarelli, Daniela, Hoegh-Guldberg, Ove, McCook, Laurence, Moltschaniwskyj, Natalie, Pratchett, Morgan S., Steneck, Robert S., and Willis, Bette (2007) Phase shifts, herbivory, and the resilience of coral reefs to climate change. Current Biology, 17 (4). pp. 360-365.

Hughes, Terry P., Bellwood, David R., Folke, Carl S., McCook, Laurence J., and Pandolfi, John M. (2007) No-take areas, herbivory and coral reef resilience. Trends in Ecology & Evolution, 22 (1). pp. 1-3.

Hutchinson, Neil, Davies, Mark S., Ng, Jasmine S.S., and Williams, Gray A. (2007) Trail following behaviour in relation to pedal mucus production in the intertidal gastropod Monodonta labio (Linnaeus). Journal of Experimental Marine Biology and Ecology, 349 (2). pp. 313-322.

Huggett, Megan J., Williamson, Jane E., de Nys, Rocky, Kjelleberg, Staffan, and Steinberg, Peter D. (2006) Larval settlement of the common Australian sea urchin Heliocidaris erythrogramma in response to bacteria from the surface of coralline algae. Oecologia, 149 (4). pp. 604-619.

Hoogenboom, Mia O., Anthony, Kenneth R.N., and Connolly, Sean R. (2006) Energetic cost of photoinhibition in corals. Marine Ecology Progress Series, 313. pp. 1-12.

Hutchinson, Neil, Nagarkar, Sanjay, Aitchison, Jonathan C., and Williams, Gray A. (2006) Microspatial variation in marine biofilm abundance on intertidal rock surfaces. Aquatic Microbial Ecology, 42 (2). pp. 187-197.

Heupel, Michelle R., Simpfendorfer, Colin A., Collins, Angela B., and Tyminski, John P. (2006) Residency and movement patterns of bonnethead sharks, Sphyrna tiburo, in a large Florida estuary. Environmental Biology of Fishes, 76. pp. 47-67.

Holley, David K., Lawler, Ivan R., and Gales, Nicholas J. (2006) Summer survey of dugong distribution and abundance in Shark Bay reveals additional key habitat area. Wildlife Research, 33 (3). pp. 243-250.

Hixon, Mark A., and Jones, Geoffrey P. (2005) Competition, predation, and density-dependent mortality in demersal marine fishes. Ecology, 86 (11). pp. 2847-2859.

Hughes, Terence P., Bellwood, David R., Folke, Carl, Steneck, Robert S., and Wilson, James (2005) New paradigms for supporting the resilience of marine ecosystems. Trends in Ecology and Evolution, 20 (7). pp. 380-386.

Hernaman, V., and Munday, P.L. (2005) Life-history characteristics of coral reef gobies. I. Growth and life-span. Marine Ecology Progress Series, 290. pp. 207-221.

Hernaman, V., and Munday, P.L. (2005) Life-history characteristics of coral reef gobies. II. Mortality rate, mating system and timing of maturation. Marine Ecology Progress Series, 290. pp. 223-237.

Heupel, M. R., and Simpfendorfer, C. A. (2005) Quantitative analysis of aggregation behaviour in juvenile blacktip sharks. Marine Biology, 147 (5). pp. 1239-1249.

Harrington, Lindsay, Fabricius, Katharina, Eaglesham, Geoff, and Negri, Andrew (2005) Synergistic effects of diuron and sedimentation on photosynthesis and survival of crustose coralline algae. Marine Pollution Bulletin, 51 (1-4). pp. 415-427.

Hobbs, Jean-Paul A., Munday, Philip L., and Jones, Geoffrey P. (2004) Social induction of maturation and sex determination in a coral reef fish. Proceedings of the Royal Society of London Series B: biological sciences, 271 (1553). pp. 2109-2114.

Heupel, Michelle R., Simpfendorfer, Colin A., and Hueter, Robert E. (2004) Estimation of shark home ranges using passive monitoring techniques. Environmental Biology of Fishes, 71 (2). pp. 135-142.

Hobbs, J.-P., and Munday, P.L. (2004) Intraspecific competition controls spatial distribution and social organisation of the coral-dwelling goby Gobiodon histrio. Marine Ecology Progress Series, 278. pp. 253-259.

Hoey, Andrew S., and McCormick, Mark I. (2004) Selective predation for low body condition at the larval-juvenile transition of a coral reef fish. Oecologia, 139 (1). pp. 23-29.

Hodgson, Amanda Jane (2004) Dugong behaviour and responses to human influences. PhD thesis, James Cook University.

Harrington, Lindsay Mortan (2004) Ecology of crustose coralline algae; interactions with scleractinian corals and responses to environmental conditions. PhD thesis, James Cook University.

Hueter, R.E., Heupel, M.R., Heist, E.J., and Keeney, D.B. (2004) The implications of philopatry in sharks for the management of shark fisheries. Journal of Northwest Atlantic Fishery Science , 35. pp. 239-247.

Hughes, T.P., Baird, A.H., Bellwood, D.R., Connolly, S.R., Folke, C., Grosberg, R., Hoegh-Guldberg, O., Jackson, J.B.C., Kleypas, J., Lough, J.M., Marshall, P., Nyström, M., Palumbi, S.R., Pandolfi, J.M., Rosen, B., and Roughgarden, J. (2003) Response to Causes of coral reef degradation [Aronson et al. (2003) Causes of coral reef degradation]. Science, 302 (5650). pp. 1503-1504.

Harding, Jeffery A., Almany, Glenn, Houck, Lynne D., and Hixon, Mark A. (2003) Experimental analysis of monogamy in the Caribbean cleaner goby, Gobiosoma evelynae. Animal Behaviour, 65 (5). pp. 865-874.

Hughes, Terry (2003) Biogeographic comparisons of coral faunas. Oceanus, 29 (3-4). pp. 291-301.

Heupel, M.R., Simpfendorfer, C.A., and Hueter, R.E. (2003) Running before the storm: blacktip sharks respond to falling barometric pressure associated with Tropical Storm Gabrielle. Journal of Fish Biology, 63 (5). pp. 1357-1363.

Hoegh-Guldberg, Ove, Jones, Ross J, Ward, Selina, and Loh, William K (2002) Is coral bleaching really adaptive? Nature, 415 (6872). pp. 601-602.

Hughes, Terry P., Bellwood, David R., and Connolly, Sean R. (2002) Biodiversity hotspots, centres of endemicity, and the conservation of coral reefs. Ecology Letters, 5 (6). pp. 775-784.

Haine, Olivia S., Ridd, Peter V., and Rowe, Richard J. (2001) Range of electrosensory detection of prey by Carcharhinus melanopterus and Himantura granulata. Marine and Freshwater Research, 52 (3). pp. 291-296.

Horne, Michelle L. (2001) A new seahorse species (Syngnathidae: Hippocampus) from the Great Barrier Reef. Records of the Australian Museum, 53 (2). pp. 243-246.

Hughes, Terence P., and Tanner, Jason E. (2000) Recruitment failure, life histories, and long-term decline of Caribbean corals. Ecology, 81 (8). pp. 2250-2263.

Hughes, T. P., Baird, A. H., Dinsdale, E. A., Moltschaniwskyj, N. A., Pratchett, M. S., Tanner, J. E., and Willis, B. L. (2000) Supply-side ecology works both ways: the link between benthic adults, fecundity, and larval recruits. Ecology, 81 (8). pp. 2241-2249.

Hughes, Terry P. (2000) Geology and ecology of coral reefs: book review of "Reef Evolution" by Rachel Wood, 1999, Oxford University Press. Trends in Ecology & Evolution, 15 (3). p. 125.

Hughes, T.P., Cornell, H.V., Caley, M.J., Karlson, R.H., Wallace, C.C., and Wolstenholme, J. (2000) Local and regional patterns in the community structure of corals. In: Abstracts of the Ninth International Coral Reef Symposium, p. 5. From: 9th International Coral Reef Symposium: World Coral Reefs in the New Millenium, 23-27 October 2000, Bali, Indonesia.

Hernaman, V., Munday, P.L., and Schläppy, M. (2000) Validation of otolith growth-increment periodicity in tropical gobies. Marine Biology, 137 (4). pp. 715-726.

Hughes, T.P., Baird, A.H., Dinsdale, E.A., Moltschaniwskyj, Natalie, Pratchett, M.S., Tanner, J.E., and Willis, B.L. (1999) Patterns of recruitment and abundance of corals along the Great Barrier Reef. Nature, 397. pp. 59-63.

Hughes, Terry, Szmant, Alina M., Steneck, Robert, Carpenter, Robert, and Miller, Steven (1999) Algal blooms on coral reefs: what are the causes? Limnology and Oceanography, 44 (6). pp. 1583-1586.

Hughes, T.P., and Connell, J.H. (1999) Multiple stressors on coral reefs: a long-term perspective. Limnology and Oceanography, 44 (3). pp. 932-940.

Hughes, T.P. (1999) Off-reef transport of coral fragments at Lizard Island, Australia. Marine Geology, 157 (1-2). pp. 1-6.

Hall, Vicki R (1998) Injury and regeneration of reef-crest corals at Lizard Island, Great Barrier Reef, Australia. PhD thesis, James Cook University.

Hilomen, Vincent Velarde (1997) Inter- and intra-habitat movement patterns and population dynamics of small reef fishes of commercial and recreational significance. PhD thesis, James Cook University of North Queensland.

Hughes, Terence P. (1996) Demographic approaches to community dynamics: a coral reef example. Ecology, 77 (7). pp. 2256-2260.

Hall, V.R., and Hughes, T.P. (1996) Reproductive strategies of modular organisms: comparative studies of reef-building corals. Ecology, 77 (3). pp. 950-963.

Hodgson, Gregor, Ogden, John C., and Hughes, Terrence P. (1994) Coral-reef catastrophe. Science, 266 (5193). pp. 1930-1933.

Hunt, Marina J. (1994) Effects of enhanced climate change and sea level rise on shallow-water reef corals: an experimantal analysis of coral demographic and photophysiological responses to depth changes. PhD thesis, James Cook University of North Queensland.

Hoedt, Frank Edward (1994) A comparative study of the habitats, growth and reproduction of eight species of tropical anchovy from Cleveland and Bowling Green Bays, North Queensland. PhD thesis, James Cook University.

Hughes, Terrence P. (1994) Catastrophes, phase-shifts, and large-scale degradation of a Caribbean coral-reef. Science, 265 (5178). pp. 1547-1551.

Hughes, Terrence P. (1993) Coral reef degradation: a long-term study of human and natural impacts. In: Ginsburg, Robert N., (ed.) Proceedings of the Colloquium on Global Aspects of Coral Reefs: health, hazards and history. University of Miami Press, Miami, Florida, USA, pp. 208-213.

Hughes, Terry (1993) Preface. Coral Reefs, 12 (3-4). p. 115.

Hughes, Terence P., Ayre, David, and Connell, Joseph H. (1992) The evolutionary ecology of corals. Trends in Ecology and Evolution, 7 (9). pp. 292-295.

Hughes, Terence P. (1990) Recruitment limitation, mortality, and population regulation in open systems: a case-study. Ecology, 71 (1). pp. 12-20.

Hughes, Terence P. (1989) Community structure and diversity of coral reefs: the role of history. Ecology, 70 (1). pp. 275-279.

Heyward, Andrew John (1987) Genetic systems and hereditary structures of reef corals. PhD thesis, James Cook University.

Hughes, Terence P. (1987) Skeletal density and growth form of corals. Marine Ecology Progress Series, 35 (3). pp. 259-266.

Hughes, Terence P., Reed, Daniel C., and Boyle, Mary-Jo (1987) Herbivory on coral reefs: community structure following mass mortalities of sea urchins. Journal of Experimental Marine Biology and Ecology, 113 (1). pp. 39-59.

Hughes, Terence P., and Connell, Joseph H. (1987) Population dynamics based on size or age? A reef-coral analysis. American Naturalist, 129 (6). pp. 818-829.

Heyward, A.J., and Babcock, R.C. (1986) Self- and cross-fertilization in scleractinian corals. Marine Biology, 90 (2). pp. 191-195.

Hughes, T.P., Keller, B.D., Jackson, J.B.C., and Boyle, M.J. (1985) Mass mortality of the echinoid Diadema antillarum Philippi in Jamaica. Bulletin of Marine Science, 36. pp. 377-384.

Hughes, T.P., and Jackson, J.B.C. (1985) Population dynamics and life histories of foliaceeous corals. Ecological Monographs, 55 (2). pp. 141-166.

Harrison, Peter L., Babcock, Russell C., Bull, Gordon D., Oliver, James K., Wallace, Carden C., and Willis, Bette L. (1984) Mass spawning in tropical reef corals. Science, 223 (4641). pp. 1186-1189.

Hughes, Terence P. (1984) Population dynamics based on individual size rather than age: a general model with a reef coral example. American Naturalist, 123 (6). pp. 778-795.

Harriott, V.J. (1983) Reproductive ecology of four scleratinian species at Lizard Island, Great Barrier Reef. Coral Reefs, 2 (1). pp. 9-18.

Harriott, V.J. (1983) Reproductive seasonality, settlement, and post-settlement mortality of Pocillopora damicornis (Linnaeus), at Lizard Island, Great Barrier Reef. Coral Reefs, 2 (3). pp. 151-157.

Hughes, Terry, and Jackson, Jeremy (1980) Do corals lie about their age: some demographic consequences of partial mortality, fission, and fusion. Science, 209 (4457). pp. 713-715.

I

Isdale, Peter James (1981) Geographical variation in the growth rate of the hermatypic coral Porites in the Great Barrier Reef Province, Australia. PhD thesis, James Cook University.

J

Jensen, Michael P., Bell, Ian, Limpus, Colin J., Hamann, Mark, Ambar, Stephen, Whap, Terrence, David, Charles, and FitzSimmons, Nancy N. (2016) Spatial and temporal genetic variation among size classes of green turtles (Chelonia mydas) provides information on oceanic dispersal and population dynamics. Marine Ecology Progress Series, 543. pp. 241-256.

Jankowski, M.W., Gardiner, N.R., and Jones, G.P. (2015) Depth and reef profile: effects on the distribution and abundance of coral reef fishes. Environmental Biology of Fishes, 98 (5). pp. 1373-1386.

Jankowski, M.W., Graham, N.A.J., and Jones, G.P. (2015) Depth gradients in diversity, distribution and habitat specialisation in coral reef fishes: implications for the depth-refuge hypothesis. Marine Ecology Progress Series, 540. pp. 203-215.

Jarvis, Jessie C., and Moore, Kenneth A. (2015) Effects of seed source, sediment type, and burial depth on mixed-annual and perennial Zostera marina L. seed germination and seedling establishment. Estuaries and Coasts, 38 (3). pp. 964-978.

Johansen, J.L., Pratchett, M.S., Messmer, V., Coker, D.J., Tobin, A.J., and Hoey, A.S. (2015) Large predatory coral trout species unlikely to meet increasing energetic demands in a warming ocean. Scientific Reports, 5. pp. 1-8.

Jones, Geoffrey P. (2015) Mission impossible: unlocking the secrets of coral reef fish dispersal. In: Mora, Camilo, (ed.) Ecology of Fishes on Coral Reefs. Cambridge University Press, Cambridge, UK, pp. 16-27.

Johansen, Jacob L., Steffensen, John F., and Jones, Geoffrey P. (2015) Winter temperatures decrease swimming performance and limit distributions of tropical damselfishes. Conservation Physiology, 3 (1). pp. 1-12.

Januchowski-Hartley, Fraser A., Cinner, Joshua E., and Graham, Nicholas A.J. (2014) Fishery benefits from behavioural modification of fishes in periodically harvested fisheries closures. Aquatic Conservation: marine and freshwater ecosystems , 24 (6). pp. 777-790.

Jarvis, Jessie C., Moore, Kenneth A., and Kenworthy, W. Judson (2014) Persistence of Zostera marina L. (eelgrass) seeds in the sediment seed bank. Journal of Experimental Marine Biology and Ecology, 459. pp. 126-136.

Johansen, J.L., Messmer, V., Coker, D.J., Hoey, A.S., and Pratchett, M.S. (2014) Increasing ocean temperatures reduce activity patterns of a large commercially important coral reef fish. Global Change Biology, 20 (4). pp. 1067-1074.

Jarvis, Jessie C., Brush, Mark J., and Moore, Kenneth A. (2014) Modeling loss and recovery of Zostera marina beds in the Chesapeake Bay: the role of seedlings and seed-bank viability. Aquatic Botany, 113. pp. 32-45.

Johansen, Jacob L. (2014) Quantifying water flow within aquatic ecosystems using load cell sensors: a profile of currents experienced by coral reef organisms around Lizard Island, Great Barrier Reef, Australia. PLoS ONE, 9 (1). pp. 1-9.

Johansson, C.L., van de Leemput, I.A., Depczynski, M., Hoey, A.S., and Bellwood, D.R. (2013) Key herbivores reveal limited functional redundancy on inshore coral reefs. Coral Reefs, 32 (4). pp. 963-972.

Johansen, J.L., and Jones, G.P. (2013) Sediment-induced turbidity impairs foraging performance and prey choice of planktivorous coral reef fishes. Ecological Applications, 23 (6). pp. 1504-1517.

Johansson, C.L., Bellwood, D.R., Depczynski, M., and Hoey, A.S. (2013) The distribution of the sea urchin Echinometra mathaei (de Blainville) and its predators on Ningaloo Reef, Western Australia: the implications for top-down control in an intact reef system. Journal of Experimental Marine Biology and Ecology, 442. pp. 39-46.

Jones, G.P. (2013) Ecology of rocky reef fish of northeastern New Zealand: 50 years on. New Zealand Journal of Marine and Freshwater Research, 47 (3). pp. 334-359.

Johansson, Charlotte Lina (2012) A functional analysis of herbivory on Ningaloo Reef, Australia. PhD thesis, James Cook University.

Johansen, Jacob L. (2012) Energetics of habitat use in planktivorous coral reef fishes: does specialization confer sensitivity to changing environmental conditions? PhD thesis, James Cook University.

Jarvis, Jessie C., Moore, Kenneth, and Kenworthy, W. Judson (2012) Characterization and ecological implication of ­eelgrass life history strategies near the species' southern limit in the western North Atlantic. Marine Ecology Progress Series, 444. pp. 43-56.

Johansson, C. L., Bellwood, D. R., and Depczynski, M. (2012) The importance of live coral for small-sized herbivorous reef fishes in physically challenging environments. Marine and Freshwater Research, 63 (8). pp. 672-679.

Johansson, C.L., Bellwood, D.R., and Depczynski, M. (2010) Sea urchins, macroalgae and coral reef decline: a functional evaluation of an intact reef system, Ningaloo, Western Australia. Marine Ecology Progress Series, 414. pp. 65-74.

Jarvis, Jessie C. (2010) Vertical Accretion Rates in Coastal Louisiana: a review of the scientific literature. Report. U.S. Army Engineer Research and Development Center, Vicksburg, MS, USA.

Jarvis, Jessie C., and Moore, Kenneth A. (2010) The role of seedlings and seed bank viability in the recovery of Chesapeake Bay, USA, Zostera marina populations following a large-scale decline. Hydrobiologia, 649 (1). pp. 55-68.

Jones, G.P., Almany, G.R., Russ, G.R., Sale, P.F., Steneck, R.S., Van Oppen, M.J.H., and Willis, B.L. (2009) Larval retention and connectivity among populations of corals and reef fishes: history, advances and challenges. Coral Reefs, 28 (2). pp. 307-325.

Jones, G.P., Russ, G.R., Sale, P.F., and Steneck, R.S. (2009) Theme section on “Larval connectivity, resilience and the future of coral reefs”. Coral Reefs, 28 (2). pp. 303-305.

Jones, A.M., Cantin, N.E., Berkelmans, R., Sinclair, B., and Negri, A.P. (2008) A 3D modeling method to calculate the surface areas of coral branches. Coral Reefs, 27 (3). pp. 521-526.

Johnston, Ross, and Sheaves, Marcus (2008) Cross-channel distribution of small fish in tropical and subtropical coastal wetlands is trophic-, taxonomic-, and wetland depth-dependent. Marine Ecology Progress Series, 357. pp. 255-270.

Jones, David, Jerry, Dean, McCormick, Mark, and Bay, Line (2008) Development of nine microsatellite markers for Pomacentrus amboinensis. Molecular Ecology Resources, 8 (6). pp. 1332-1334.

Johnston, Ross, and Sheaves, Marcus (2007) Small fish and crustaceans demonstrate a preference for particular small-scale habitats when mangrove forests are not accessible. Journal of Experimental Marine Biology and Ecology, 353 (2). pp. 164-179.

Johnston, R., Sheaves, M., and Molony, B. (2007) Are distributions of fishes in tropical estuaries influenced by turbidity over small spatial scales? Journal of Fish Biology, 71 (3 ). pp. 657-671.

Jones, Geoffrey P., Srinivasan, Maya, and Almany, Glenn R. (2007) Population connectivity and conservation of marine biodiversity. Oceanography, 20 (3). pp. 100-111.

Job, Suresh, and Bellwood, David R. (2007) Ultraviolet photosensitivity and feeding in larval and juvenile coral reef fishes. Marine Biology, 151 (2). pp. 495-503.

Jupiter, Stacy D., Potts, Donald C., Phinn, Stuart R., and Duke, Norman C. (2007) Natural and anthropogenic changes to mangrove distributions in the Pioneer River Estuary (Queensland, Australia). Wetlands Ecology and Management, 15 (1). pp. 51-62.

Jones, Geoffrey P., Santana, Lara, McCook, Laurence J., and McCormick, Mark I. (2006) Resource use and impact of three herbivorous damselfishes on coral reef communities. Marine Ecology Progress Series, 328. pp. 215-224.

Jackson, Jeremy B.C., Ogden, John C., Pandolfi, John M., Baron, Nancy, Bradbury, Rodger H., Guzman, Hector M., Hughes, Terry, Kappel, Carrie V., Micheli, Fiorenza, Possingham, Hugh P., and Sala, Enric (2005) Reassessing U.S. coral reefs. Science, 308 (5729). pp. 1740-1742.

Jones, Geoffrey P., Planes, Serge, and Thorrold, Simon R. (2005) Coral reef fish larvae settle close to home. Current Biology, 15 (14). pp. 1314-1318.

Jones, Geoffrey P., McCormick, Mark I., Srinivasan, Maya, and Eagle, Janelle V. (2004) Coral decline threatens fish biodiversity in marine reserves. Proceedings of the National Academy of Sciences, 101 (21). pp. 8251-8253.

Jompa, Jamaluddin, and McCook, Laurence J. (2003) Contrasting effects of turf algae on corals: massive Porites spp. are unaffected by mixed-species turfs, but killed by the red alga Anotrichium tenue. Marine Ecology Progress Series, 258. pp. 79-86.

Jompa, Jamaluddin, and McCook, Laurence J. (2002) Effects of competition and herbivory on interactions between a hard coral and a brown alga. Journal of Experimental Marine Biology and Ecology, 271 (1). pp. 25-39.

Jones, Geoffrey P., and McCormick, Mark I. (2002) Numerical and energetic processes in the ecology of coral reef fishes. In: Sale, Peter S., (ed.) Coral Reef Fishes: dynamic and diversity in a complex ecosystem. Elsevier, San Diego, CA, USA, pp. 221-238.

Jompa, Jamaluddin, and McCook, Laurence J. (2002) The effects of nutrients and herbivory on competition between a hard coral (Porites cylindrica) and a brown alga (Lobophora variegata). Limnology and Oceanography, 47 (2). pp. 527-534.

Jackson, Jeremy B. C., Kirby, Michael X., Berger, Wolfgang H., Bjorndal, Karen A., Botsford, Louis W., Bourque, Bruce J., Bradbury, Roger H., Cooke, Richard, Erlandson, Jon, Estes, James A., Hughes, Terence P., Kidwell, Susan, Lange, Carina B., Lenihan, Hunter S., Pandolfi, John M., Peterson, Charles H., Steneck, Robert S., Tegner, Mia J., and Warner, Robert R. (2001) Historical overfishing and the recent collapse of coastal ecosystems. Science, 293 (5530). pp. 629-637.

Jompa, Jamaluddin (2001) Interactions between macroalgae and scleractinian corals in the context of reef degradation. PhD thesis, James Cook University.

Jones, R.J., and Hoegh-Guldberg, O. (2001) Diurnal changes in the photochemical efficiency of the symbiotic dinoflagellates (Dinophyceae) of corals: photoprotection, photoinactivation and the relationship to coral bleaching. Plant, Cell & Environment, 24 (1). pp. 89-99.

Job, Suresh D., and Shand, Julia (2001) Spectral sensitivity of larval and juvenile coral reef fishes: implications for feeding in a variable light environment. Marine Ecology-Progress Series, 214. pp. 267-277.

Job, Suresh D., and Bellwood, David R. (2000) Light sensitivity in larval fishes: implications for vertical zonation in the pelagic zone. Limnology and Oceanography, 45 (2). pp. 362-371.

Jackson, George David (1991) Age, growth and population dynamics of tropical squid and sepioid populations in waters off Townsville, North Queensland, Australia. PhD thesis, James Cook University.

Jones, G.P., Kaly, U.L., and Clements, K. (1991) Preliminary records of the coral reef fishes of Tuvalu. South Pacific Journal of Natural Science, 11. pp. 40-57.

Jackson, George David (1990) Age and growth of the tropical nearshore loliginid squid Sepioteuthis lessoniana determined from statolith growth-ring analysis. Fishery Bulletin, 88 (1). pp. 113-118.

Jackson, George David (1990) The use of tetracycline staining techniques to determine statolith growth ring periodicity in the tropical loliginid squids Loliolus noctiluca and Loligo chinensis. The Veliger, 33 (4). pp. 389-393.

Jackson, George David (1989) The use of statolith microstructures to analyze life history events in the small tropical cephalopod Idiosepius pycmaeus. Fishery Bulletin, 87 (2). pp. 265-272.

Jackson, Jeremy B.C., and Hughes, Terence P. (1985) Adaptive strategies of coral reef invertebrates: coral reef environments that are regularly disturbed by storms and by predation often favor the very organisms most susceptible to damage by these processes. American Scientist, 73 (3). pp. 265-274.

K

Kerry, James Timothy (2015) The role of tabular structure in the ecology of large reef fishes. PhD thesis, James Cook University.

Kerry, J.T., and Bellwood, D.R. (2015) The functional role of tabular structures for large reef fishes: avoiding predators or solar irradiance? Coral Reefs, 34 (2). pp. 693-702.

Kerry, J.T., and Bellwood, D.R. (2015) Do tabular corals constitute keystone structures for fishes on coral reefs? Coral Reefs, 34 (1). pp. 41-50.

Keith, Sally A., Woolsey, E.S., Madin, J.S., Byrne, M., and Baird, A.H. (2015) Differential establishment potential of species predicts a shift in coral assemblage structure across a biogeographic barrier. Ecography, 38 (12). pp. 1225-1234.

Kulbicki, Michel, Parravicini, Valeriano, and Mouillot, David (2015) Patterns and processes in reef fish body size. In: Mora, Camilo, (ed.) Ecology of Fishes on Coral Reefs. Cambridge University Press, Cambridge, UK, pp. 104-115.

Kramer, Michael J., Bellwood, Orpha, Fulton, Christopher J., and Bellwood, David R. (2015) Refining the invertivore: diversity and specialisation in fish predation on coral reef crustaceans. Marine Biology, 162 (9). pp. 1779-1786.

Killen, Shaun S., Mitchell, Matthew D., Rummer, Jodie L., Chivers, Douglas P., Ferrari, Maud C.O., Meekan, Mark G., and McCormick, Mark I. (2014) Aerobic scope predicts dominance during early life in a tropical damselfish. Functional Ecology, 28 (6). pp. 1367-1376.

Kohli, Gurjeet S., Murray, Shauna A., Neilan, Brett A., Rhodes, Lesley L., Harwood, D. Tim, Smith, Kirsty F., Meyer, Lauren, Capper, Angela, Brett, Steve, and Hallegraeff, Gustaaf M. (2014) High abundance of the potentially maitotoxic dinoflagellate Gambierdiscus carpenteri in temperate waters of New South Wales, Australia. Harmful Algae, 39. pp. 134-145.

Kramer, M.J., Bellwood, D.R., and Bellwood, O. (2014) Benthic Crustacea on coral reefs: a quantitative survey. Marine Ecology Progress Series, 511. pp. 105-116.

Kramer, M.J., Bellwood, D.R., and Bellwood, O. (2014) Large‐scale spatial variation in epilithic algal matrix cryptofaunal assemblages on the Great Barrier Reef. Marine Biology, 161 (9). pp. 2183-2190.

Keshavmurthy, Shashank, Meng, Pei-Jie, Wang, Jih-Terng, Kuo, Chao-Yang, Yang, Sung-Yin, Hsu, Chia-Min, Gan, Chai-Hsia, Dai, Chang-Feng, and Chen, Chaolun Allen (2014) Can resistant coral-Symbiodinium associations enable coral communities to survive climate change? A study of a site exposed to long-termhot water input. PeerJ, 2. pp. 1-28.

Kingsford, M.J., Finn, M.D., O'Callaghan, M.D., Atema, J., and Gerlach, G. (2014) Planktonic larval duration, age and growth of Ostorhinchus doederleini (Pisces: Apogonidae) on the southern Great Barrier Reef, Australia. Marine Biology, 161 (2). pp. 245-259.

Katz, Sefano M., Pollock, F. Joseph, Bourne, D.G., and Willis, Bette L. (2014) Crown-of-thorns starfish predation and physical injuries promote brown band disease on corals. Coral Reefs, 33 (3). pp. 705-716.

Keith, Sally A., Kerswell, Ailsa P., and Connolly, Sean R. (2014) Global diversity of marine macroalgae: environmental conditions explain less variation in the tropics. Global Ecology and Biogeography, 23 (5). pp. 517-529.

Kingsford, Michael J., and Mooney, Christopher J. (2014) The ecology of box jellyfishes (Cubozoa). In: Pitt, Kylie A., and Lucas, Cathy H., (eds.) Jellyfish Blooms. Springer, Dordrecht, The Netherlands, pp. 267-302.

Kessel, S.T., Cooke, S.J., Heupel, M.R., Hussey, N.E., Simpfendorfer, C.A., Vagle, S., and Fisk, A.T. (2014) A review of detection range testing in aquatic passive acoustic telemetry studies. Reviews in Fish Biology and Fisheries, 24 (1). pp. 199-218.

Komyakova, Valeriya, Munday, Philip L., and Jones, Geoffrey P. (2013) Relative importance of coral cover, habitat complexity and diversity in determining the structure of reef fish communities. PLoS ONE, 8 (12). pp. 1-12.

Kulbicki, Michel, Parravicini, Valeriano, Bellwood, David R., Arias-Gonzàlez, Ernesto, Chabanet, Pascale, Floeter, Sergio R., Friedlander, Alan, McPherson, Jana, Myers, Robert E., Vigliola, Laurent, and Mouillot, David (2013) Global biogeography of reef fishes: a hierarchical quantitative delineation of regions. PLoS ONE, 8 (12). pp. 1-11.

Knight, Jon M., Griffin, Lachlan, Dale, Pat E.R., and Sheaves, Marcus (2013) Short-term dissolved oxygen patterns in sub-tropical mangroves. Estuarine, Coastal and Shelf Science, 131. pp. 290-296.

Kelaher, Brendan P., Van Den Broek, James, York, Paul H., Bishop, Melanie J., and Booth, David J. (2013) Positive responses of a seagrass ecosystem to experimental nutrient enrichment. Marine Ecology Progress Series, 487. pp. 15-25.

Kramer, M.J., Bellwood, O., and Bellwood, D.R. (2013) The trophic importance of algal turfs for coral reef fishes: the crustacean link. Coral Reefs, 32 (2). pp. 575-583.

Kerr, Alexander M. (2013) Holothuria (Semperothuria) roseomaculata n. sp. (Aspidochirotida: Holothuriidae), a coral-reef inhabiting sea cucumber from the western Pacific Ocean. Zootaxa, 3641 (4). pp. 384-394.

Keshavmurthy, Shashank, Yang, Sung-Yin, Alamaru, Ada, Chuang, Yoo-Yang, Pichon, Michel, Obura, David, Fontana, Silvia, De Palmas, Stephane, Stefani, Fabrizio, Benzoni, Francesca, MacDonald, Angus, Noreen, Annika M.E., Chen, Chienshun, Wallace, Carden C., Pillay, Ruby Moothein, Denis, Vianney, Amri, Affendi Yang, Reimer, James D., Mezaki, Takuma, Sheppard, Charles, Loya, Yossi, Abelson, Avidor, Mohammed, Mohammed Suleiman, Baker, Andrew C., Mostafavi, Pargol Ghavam, Suharsono, Budiyanto A., and Chen, Chaolun Allen (2013) DNA barcoding reveals the coral "laboratory-rat", Stylophora pistillata encompasses multiple identities. Scientific Reports, 3. pp. 1-7.

Kramer, M.J., Bellwood, D.R., and Bellwood, O. (2013) Emergent fauna from hard surfaces on the Great Barrier Reef, Australia. Marine and Freshwater Research, 64 (8). pp. 687-691.

Kingsford, Michael J. (2013) Paradigms for planktonic assemblages: 50 years of contributions from the Leigh Marine Laboratory, Northland, New Zealand. New Zealand Journal of Marine and Freshwater Research, 47 (3). pp. 294-312.

Kuo, Chao-yang, Yuen, Yeong Shyan, Meng, Pei-Jie , Ho, Ping-Ho , Wang, Jih-Terng, Liu, Pi-Jen, Chang, Yang-Chi, Dai, Chang-Feng , Fan, Tung-Yung , Lin, Hsing-Juh, Baird, Andrew Hamilton, and Chen, Chaolun Allen (2012) Recurrent disturbances and the degradation of hard coral communities in Taiwan. PLoS ONE, 7 (8). e44364- .

Knip, Danielle M., Heupel, Michelle R., and Simpfendorfer, Colin A. (2012) Mortality rates for two shark species occupying a shared coastal environment. Fisheries Research, 125-126. pp. 184-189.

Kingsford, M.J., Seymour, J.E., and O'Callaghan, M.D. (2012) Abundance patterns of cubozoans on and near the Great Barrier Reef. Hydrobiologia, 690 (1). pp. 257-268.

Kramer, M.J., Bellwood, D.R., and Bellwood, O. (2012) Cryptofauna of the epilithic algal matrix on an inshore coral reef, Great Barrier Reef. Coral Reefs, 31 (4). pp. 1007-1015.

Knip, D.M., Heupel, M.R., and Simpfendorfer, C.A. (2012) Habitat use and spatial segregation of adult spottail sharks Carcharhinus sorrah in tropical nearshore waters. Journal of Fish Biology, 80 (4). pp. 767-784.

Knip, Danielle M., Heupel, Michelle R., and Simpfendorfer, Colin A. (2012) To roam or to home: site fidelity in a tropical coastal shark. Marine Biology, 159 (8). pp. 1647-1657.

Kerry, J.T., and Bellwood, D.R. (2012) The effect of coral morphology on shelter selection by coral reef fishes. Coral Reefs, 31 (2). pp. 415-424.

Knip, Danielle Melissa (2011) Spatial ecology of mobile predators in a nearshore tropical environment and its implication for marine protected areas. PhD thesis, James Cook University.

Konow, Nicolai, and Bellwood, David R. (2011) Evolution of high trophic diversity based on limited functional disparity in the feeding apparatus of marine angelfishes (f. Pomacanthidae). PLoS ONE, 6 (9). pp. 1-11.

Kinney, Michael J. (2011) The communal nursery area paradigm revisited: niche overlap versus niche separation among juvenile shark species of Cleveland Bay. PhD thesis, James Cook University.

Karlson, Ronald H., Connolly, Sean R., and Hughes, Terence P. (2011) Spatial variance in abundance and occupancy of corals across broad geographic scales. Ecology, 92 (6). pp. 1282-1291.

Knip, Danielle M., Heupel, Michelle R., Simpfendorfer, Colin A., Tobin, Andrew J., and Moloney, James (2011) Wet-season effects on the distribution of juvenile pigeye sharks, Carcharhinus amboinensis, in tropical nearshore waters. Marine and Freshwater Research, 62 (6). pp. 658-667.

Kayal, Mohsen, Lenihan, Hunter S, Pau, Cedric, Penin, Lucie, and Adjeroud, Mehdi (2011) Associational refuges among corals mediate impacts of a crown-of-thorns starfish Acanthaster planci outbreak. Indirect positive interactions in communities. Coral Reefs, 30 (3). pp. 827-837.

Knip, Danielle M., Heupel, Michelle R., Simpfendorfer, Colin A., Tobin, Andrew J., and Moloney, James (2011) Ontogenetic shifts in movement and habitat use of juvenile pigeye sharks Carcharhinus amboinensis in a tropical nearshore region. Marine Ecology Progress Series, 425. pp. 233-246.

Koehn, John D., Hobday, Alistair J., Pratchett, Morgan S., and Gillanders, Bronwyn M. (2011) Climate change and Australian marine and freshwater environments, fishes and fisheries: synthesis and options for adaptation. Marine and Freshwater Research, 62 (9). pp. 1148-1164.

Keith, Sally, Herbert, Roger J.H., Norton, Paul A., Hawkins, Stephen J., and Newton, Adrian C. (2011) Individualistic species limitations of climate-induced range expansions generated by meso-scale dispersal barriers. Diversity and Distributions, 17 (2). pp. 275-286.

Krajewski, João Paulo, Floeter, Sergio R., Jones, Geoffrey P., and Leite, Fosca P.P (2011) Patterns of variation in behaviour within and among reef fish species on an isolated tropical island: influence of exposure and substratum. Journal of the Marine Biological Association of the United Kingdom, 91 (Special Issue 6). pp. 1359-1368.

Koubbi, Philippe, Ozouf-Costaz, Catherine, Goarant, Anne, Moteki, Masato, Hulley, Percy-Alexander, Causse, Romain, Dettai, Agnès, Duhamel, Guy, Pruvost, Patrice, Tavernier, Eric, Post, Alexandra L., Beaman, Robin J., Rintoul, Stephen R., Hirawake, Toru, Hirano, Diasuke, Ishimaru, Takashi, Riddle, Martin, and Hosie, Graham (2010) Estimating the biodiversity of the East Antarctic shelf and oceanic zone for ecoregionalisation: example of the ichthyofauna of the CEAMARC (Collaborative East Antarctic Marine Census) CAML surveys. Polar Science, 4 (2). pp. 115-133.

Knip, Danielle M., Heupel, Michelle R., and Simpfendorfer, Colin A. (2010) Sharks in nearshore environments: models, importance, and consequences. Marine Ecology Progress Series, 402. pp. 1-11.

Kingsford, Michael J., and Carlson, Ian J. (2010) Patterns of distribution and movement of fishes, Ophthalmolepis lineolatus and Hypoplectrodes maccullochi, on temperate rocky reefs of south eastern Australia. Environmental Biology of Fishes, 88 (2). pp. 105-118.

Krajewski, João Paulo (2009) How do follower reef fishes find nuclear fishes? Environmental Biology of Fishes, 86 (3). pp. 379-387.

Kosnik, Mathew, Hua, Quan, Kaufman, Darrell S., and Wust, Raphael A. (2009) Taphonomic bias and time-averaging in tropical molluscan death assemblages: differential shell half-lives in Great Barrier Reef sediment. Paleobiology, 35 (4). pp. 565-586.

Kroon, F.J., Munday, P.L., and Westcott, D.A. (2009) Equivalent whole-body concentrations of 11-ketotestosterone in female and male coral goby (Gobiodon erythrospilus), a bi-directional sex-changing fish. Journal of Fish Biology, 75 (3). pp. 685-692.

Kinney, Michael John, and Simpfendorfer, Colin Ashley (2009) Reassessing the value of nursery areas to shark conservation and management. Conservation Letters, 2 (2). pp. 53-60.

Kingsford, Michael J., Hughes, Julian M., and Patterson, Heather M. (2009) Otolith chemistry of the non-dispersing reef fish Acanthochromis polyacanthus: cross-shelf patterns from the central Great Barrier Reef. Marine Ecology Progress Series, 377. pp. 279-288.

Komyakova, Valeriya (2009) Habitat characteristics as determinants of the local diversity and structure of coral reef fish communities. Masters (Research) thesis, James Cook University.

Krajewski, J.P., Bonaldo, R.M., Sazima, C., and Sazima, I. (2009) Octopus mimicking its follower reef fish. Journal of Natural History, 43 (3). pp. 185-190.

Kerr, Alexander M., Baird, Andrew, Bhalla, Ravi S. , and Srinivas, V. (2009) Reply to ‘Using remote sensing to assess the protective role of coastal woody vegetation against tsunami waves’. International Journal of Remote Sensing, 30 (14). - .

Kingsford, Michael J., Patterson, Heather M., and Flood, Matthew J. (2008) The influence of elemental chemistry on the widths of otolith increments in the neon damselfish (Pomacentrus coelestis). Fishery Bulletin, 106 (2). pp. 135-142.

Karlson, Ronald H., Cornell, Howard V., and Hughes, Terence P. (2007) Aggregation influences coral species richness at multiple spatial scales. Ecology, 88 (1). pp. 170-177.

Kelaher, Brendan P., Castilla, Juan Carlos, Prado, Luis, York, Paul, Schwindt, Evangelina, and Bortolus, Alejandro (2007) Spatial variation in molluscan assemblages from coralline turfs of Argentinean Patagonia. Journal of Molluscan Studies, 73 (2). pp. 139-146.

Kerswell, Ailsa Palmer (2006) Biogeography and macroecology of benthic marine algae. PhD thesis, James Cook University.

Kerswell, Ailsa P. (2006) Global biodiversity patterns of benthic marine algae. Ecology, 87 (10). pp. 2479-2488.

Konow, N., Fitzpatrick, R., and Barnet, A. (2006) Adult emperor angelfish (Pomacanthus imperator) clean giant sunfishes (Mola mola) at Nusa Lambongan, Indonesia. Coral Reefs, 25 (2). p. 208.

Kaneko, Hitomi, and Lawler, Ivan Robert (2006) Can near infrared spectroscopy be used to improve assessment of marine mammal diets via fecal analysis? Marine Mammal Science, 22 (2). pp. 261-275.

Kerr, Alexander M. (2005) Molecular and morphological supertree of stony corals (Anthozoa: Scleractinia) using matrix representation parsimony. Biological Reviews, 80 (4). pp. 543-558.

Kroon, Frederiecke J., Munday, Philip L., Westcott, David A., Hobbs, Jean-Paul A., and Liley, N. Robin (2005) Aromatase pathway mediates sex change in each direction. Proceedings of the Royal Society of London Series B, Biological Sciences, 272 (1570). pp. 1399-1405.

Kerr, Alexander M., Janies, Daniel A., Clouse, Ronald M., Samyn, Yves, Kuszak, Jeni, and Kim, Junhyong (2005) Molecular phylogeny of coral-reef Sea Cucumbers (Holothuriidae: Aspidochirotida) based on 16S Mitochondrial Ribosomal DNA Sequence. Marine Biotechnology, 7 (1). pp. 53-60.

Kingsford, Michael J., and Hughes, Julian M. (2005) Patterns of growth, mortality, and size of the tropical damselfish Acanthochromis polyacanthus across the continental shelf of the Great Barrier Reef. Fishery Bulletin, 103 (4). pp. 561-573.

Klanten, Selma O., Van Herwerden, Lynne, and Choat, J. Howard (2003) Acquiring reef fish DNA sequences from formalin-fixed museum specimens. Bulletin of Marine Science, 73 (3). pp. 771-776.

Kritzer, Jacob P. (2002) Stock structure, mortality and growth of the decorated goby, Istigobius decoratus (Gobiidae), at Lizard Island, Great Barrier Reef. Environmental Biology of Fishes, 63 (2). pp. 211-216.

Kritzer, Jacob P. (2002) Variation in the population biology of stripey bass Lutjanus carponotatus within and between two island groups on the Great Barrier Reef. Marine Ecology Progress Series, 243. pp. 191-207.

Kingsford, Michael (2002) The distribution patterns of exploited girellid, kyphosid and sparid fishes on temperate rocky reefs in New South Wales, Australia. Fisheries Science, 68 (Supplement I). pp. 131-134.

Kritzer, J.P., Davies, C.R., and Mapstone, B.D. (2001) Characterizing fish populations: effects of sample size and population structure on the precision of demographic parameter estimates. Canadian Journal of Fisheries and Aquatic Sciences, 58 (8). pp. 1557-1568.

Koh, Esther G. L., and Sweatman, Hugh (2000) Chemical warfare among scleractinians: bioactive natural products from Tubastraea faulkneri Wells kill larvae of potential competitors. Journal of Experimental Marine Biology and Ecology, 251 (2). pp. 141-160.

Kavanagh, Kathryn D. (2000) Larval brooding in the marine damselfish Acanthochromis polyacanthus (Pomacentridae) is correlated with highly divergent morphology, ontogeny and life-history traits. Bulletin of Marine Science, 66 (2). pp. 321-337.

Kingsford, Michael J., Pitt, Kylie A., and Gillanders, Bronwyn M. (2000) Management of jellyfish fisheries, with special reference to the O. Rhizostomeae. Oceanography and Marine Biology: an annual review, 38. pp. 85-156.

Karlson, Ronald H., Hughes, Terence P., and Karlson, Susan R. (1996) Density-dependent dynamics of soft coral aggregations: the significance of clonal growth and form. Ecology, 77 (5). pp. 1592-1599.

Kettle, Brett Thomas (1990) Variations in biometric and physiological parameters of Acanthaster planci (L.) (Echinodermata; Asteroidea) during the course of a high density outbreak. PhD thesis, James Cook University.

Kettle, B.T., and Lucas, J.S. (1987) Biometric relationships between organ indices, fecundity, oxygen consumption and body size in Acanthaster planci (L.) (Echinodermata; Asteroidea). Bulletin of Marine Science, 41 (2). pp. 541-555.

L

Last, K.S., Hendrick, V.J., Beveridge, C.M., Roberts, D.A., and Wilding, T.A. (2016) Lethal and sub-lethal responses of the biogenic reef forming polychaete Sabellaria alveolata to aqueous chlorine and temperature. Marine Environmental Research, 117. pp. 44-53.

Leahy, Susannah M., Russ, Garry R., and Abesamis, Rene A. (2016) Primacy of bottom-up effects on a butterflyfish assemblage. Marine and Freshwater Research. (In Press)

Loffler, Zoe, Bellwood, David R., and Hoey, Andrew S. (2015) Among-habitat algal selectivity by browsing herbivores on an inshore coral reef. Coral Reefs, 34 (2). pp. 597-605.

Lewison, Rebecca, Hobday, Alistair J., Maxwell, Sara, Hazen, Elliott, Hartog, Jason R., Dunn, Daniel C., Briscoe, Dana, Fossette, Sabrina, O'Keefe, Catherine E., Barnes, Michele, Abecassis, Melanie, Bograd, Steven, Benthony, N. David, Bailey, Helen, Wiley, David, Andrews, Samantha, Hazen, Lucie, and Crowder, Larry B. (2015) Dynamic ocean management: identifying the critical ingredients of dynamic approaches to ocean resource management. BioScience, 65 (5). pp. 486-498.

Lédée, Elodie J.I., Heupel, Michelle, Tobin, Andrew J., Knip, Danielle M., and Simpfendorfer, Colin A. (2015) A comparison between traditional kernel-based methods and network analysis: an example from two nearshore shark species. Animal Behaviour, 103. pp. 17-28.

Loffler, Z., Bellwood, D.R., and Hoey, A.S. (2015) Associations among coral reef macroalgae influence feeding by herbivorous fishes. Coral Reefs, 34 (1). pp. 51-55.

Lönnstedt, Oona M., and McCormick, Mark I. (2015) Damsel in distress: captured damselfish prey emit chemical cues that attract secondary predators and improve escape chances. Proceedings of the Royal Society of London Series B, Biological Sciences, 282 (1818). p. 52038.

Lefèvre, C.D., and Bellwood, D.R. (2015) Disturbance and recolonisation by small reef fishes: the role of local movement versus recruitment. Marine Ecology Progress Series, 537. pp. 205-215.

Leahy, Susannah M., Russ, Garry R., and Abesamis, Rene A. (2015) Pelagic larval duration and settlement size of a reef fish are spatially consistent, but post-settlement growth varies at the reef scale. Coral Reefs, 34 (4). pp. 1283-1296.

Lema, Kimberley A., Willis, Bette L., and Bourne, David G. (2014) Amplicon pyrosequencing reveals spatial and temporal consistency in diazotroph assemblages of the Acropora millepora microbiome. Environmental Microbiology, 16 (10). pp. 3345-3359.

Lo, Eugenia Y.Y., Duke, Norman C., and Sun, Mei (2014) Phylogeographic pattern of Rhizophora (Rhizophoraceae) reveals the importance of both vicariance and long-distance oceanic dispersal to modern mangrove distribution. BMC Evolutionary Biology, 14. pp. 1-15.

Lobato, Fabio L., Barneche, Diego R., Siqueira, Alexandre C., Liedke, Ana M.R., Lindner, Alberto, Pie, Marcio R., Bellwood, David R., and Floeter, Sergio R. (2014) Diet and diversification in the evolution of coral reef fishes. PLoS ONE, 9 (7). pp. 1-11.

Llopiz, Joel K., Cowen, Robert K., Hauff, Martha J., Ji, Rubao, Munday, Philip L., Muhling, Barbara A., Peck, Myron A., Richardson, David E., Sogard, Susan, and Sponaugle, Su (2014) Early life history and fisheries oceanography: new questions in a changing world. Oceanography, 27 (4). pp. 26-41.

Lönnstedt, Oona M., and Frisch, Ashley J. (2014) Habitat bleaching disrupts threat responses and persistence in anemonefish. Marine Ecology Progress Series, 517. pp. 265-270.

Lönnstedt, Oona M., McCormick, Mark I., Chivers, Douglas P., and Ferrari, Maud C.O. (2014) Habitat degradation is threatening reef replenishment by making fish fearless. Journal of Animal Ecology, 83 (5). pp. 1178-1185.

Lawton, Rebecca J., Pratchett, Morgan S., and Delbeek, J. Charles (2014) Harvesting of butterflyfishes for aquarium and artisanal fisheries. In: Pratchett, Morgan S., Berumen, Michael L., and Kapoor, B.G., (eds.) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA, pp. 269-291.

Lema, Kimberley A., Bourne, David G., and Willis, Bette L. (2014) Onset and establishment of diazotrophs and other bacterial associates in the early life history stages of the coral Acropora millepora. Molecular Ecology, 23 (19). pp. 4682-4695.

Lucon-Xiccato, Tyrone, Nati, Julie J.H., Blasco, Felipe Rocco, Johansen, Jacob L., Steffensen, John F., and Domenici, Paolo (2014) Severe hypoxia impairs lateralization in a marine teleost fish. Journal of Experimental Biology, 217 (23). pp. 4115-4118.

Lienart, Govinda D.H., Mitchell, Matthew D., Ferrari, Maud C.O., and McCormick, Mark I. (2014) Temperature and food availability affect risk assessment in an ectotherm. Animal Behaviour, 89. pp. 199-204.

Lamb, Joleah B. (2013) Influence of marine-based industries on coral health and disease. PhD thesis, James Cook University.

Lönnstedt, Oona Margareta (2013) Predator-prey interactions and the importance of sensory cues in a changing world. PhD thesis, James Cook university.

Lacroix, Geneviève, Maes, Gregory E., Bolle, Loes J., and Volckaert, Filip A.M. (2013) Modelling dispersal dynamics of the early life stages of a marine flatfish (Solea solea L.). Journal of Sea Research, 84. pp. 13-25.

Lönnstedt, Oona M., Munday, Philip L., McCormick, Mark I., Ferrari, Maud C.O., and Chivers, Douglas P. (2013) Ocean acidification and responses to predators: can sensory redundancy reduce the apparent impacts of elevated CO2 on fish? Ecology and Evolution, 3 (10). pp. 3565-3575.

Leduc, Antoine O.H.C., Munday, Philip L., Brown, Grant E., and Ferrari, Maud C.O, (2013) Effects of acidification on olfactory-mediated behaviour in freshwater and marine ecosystems: a synthesis. Philosophical Transactions of the Royal Society B: Biological Sciences, 368 (1627). pp. 1-14.

Leahy, Susannah M., Kingsford, Michael J., and Steinberg, Craig R. (2013) Do clouds save the Great Barrier Reef? Satellite imagery elucidates the cloud-SST relationship at the local scale. PLoS ONE, 8 (7). pp. 1-12.

Lukoschek, Vimoksalehi, Beger, Maria, Ceccarelli, Daniela, Richards, Zoe, and Pratchett, Morgan (2013) Enigmatic declines of Australia's sea snakes from a biodiversity hotspot. Biological Conservation, 166. pp. 191-202.

Lonnstedt, Oona M., McCormick, Mark I., and Chivers, Douglas P. (2013) Predator-induced changes in the growth of eyes and false eyespots. Scientific Reports, 3. pp. 1-5.

Lukoschek, Vimoksalehi, Cross, Peter, Torda, Gergely, Zimmerman, Rachel, and Willis, Bette L. (2013) The importance of coral larval recruitment for the recovery of reefs impacted by Cyclone Yasi in the central Great Barrier Reef. PLoS ONE, 8 (6). pp. 1-11.

Lawton, Rebecca J., and Pratchett, Morgan S. (2012) Influence of dietary specialization and resource availability on geographical variation in abundance of butterflyfish. Ecology and Evolution, 2 (7). pp. 1347-1361.

Lawton, Rebecca J., Cole, Andrew J., Berumen, Michael L., and Pratchett, Morgan S. (2012) Geographic variation in resource use by specialist versus generalist butterflyfishes. Ecography, 35 (6). pp. 566-576.

Lönnstedt, Oona M., McCormick, Mark I., Meekan, Mark G., Ferrari, Maud C.O., and Chivers, Douglas P. (2012) Learn and live: predator experience and feeding history determines prey behaviour and survival. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1736). pp. 2091-2098.

Lukoschek, Vimoksalehi, and Shine, Richard (2012) Sea snakes rarely venture far from home. Ecology and Evolution, 2 (6). pp. 1113-1121.

Lönnstedt, Oona M., McCormick, Mark I., and Chivers, Douglas P. (2012) Well-informed foraging: damage-released chemical cues of injured prey signal quality and size to predators. Oecologia, 168 (3). pp. 651-658.

Lawton, Rebecca J., Pratchett, Morgan S., and Berumen, Michael L. (2012) The use of specialisation indices to predict vulnerability of coral-feeding butterflyfishes to environmental change. Oikos, 121 (2). pp. 191-200.

Lönnstedt, Oona I., McCormick, Mark I., and Chivers, Douglas P. (2012) Degraded environments alter prey risk assessment. Ecology and Evolution, 3 (1). pp. 38-47.

Littman, Raechel, Willis, Bette L., and Bourne, David G. (2011) Metagenomic analysis of the coral holobiont during a natural bleaching event on the Great Barrier Reef. Environmental Microbiology Reports, 3 (6). pp. 651-660.

Lawton, Rebecca Joy (2011) Geographic variation in ecology of coral feeding butterflyfishes and resilience to large scale disturbances. PhD thesis, James Cook University.

Leggat, William, Seneca, Francois, Wasmund, Kenneth, Ukani, Lubna, Yellowlees, David, and Ainsworth, Tracy D. (2011) Differential responses of the coral host and their algal symbiont to thermal stress. PLoS ONE, 6 (10). pp. 1-11.

Linares, C., Pratchett, M.S., and Coker, D.J. (2011) Recolonisation of Acropora hyacinthus following climate-induced coral bleaching on the Great Barrier Reef. Marine Ecology Progress Series, 438. pp. 97-104.

Leggat, William, Yellowlees, David, and Medina, Monica (2011) Recent progress in Symbiodinium transcriptomics. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 120-125.

Lönnstedt, O.M., and McCormick, M.I. (2011) Growth history and intrinsic factors influence risk assessment at a critical life transition for a fish. Coral Reefs, 30 (3). pp. 805-812.

Lönnstedt, Oona M., and McCormick, Mark I. (2011) Chemical alarm cues inform prey of predation threat: the importance of ontogeny and concentration in a coral reef fish. Animal Behaviour, 82 (2). pp. 213-218.

Leis, Jeffrey M., Van Herwerden, Lynne, and Patterson, Heather (2011) Estimating connectivity in marine fish populations: what works best? In: Gibson, R.N., Atkinson, R.J.A., and Gordon, J.D.M., (eds.) Oceanography and Marine Biology: An Annual Review. Oceanography and Marine Biology: An Annual Review, 49 . CRC Press, Boca Raton, FL, USA, pp. 193-234.

Leis, Jeffrey, Siebeck, Ulrike, and Dixson, Danielle (2011) How Nemo finds home: the neuroecology of dispersal and of population connectivity in larvae of marine fishes. Integrative and Comparative Biology, 51 (5). pp. 826-843.

Le Grand, Helen M, and Fabricius, Katharina (2011) Relationship of internal macrobioeroder densities in living massive Porites to turbidity and chlorophyll on the Australian Great Barrier Reef. Coral Reefs, 30 (1). pp. 97-107.

Littman, Raechel (2011) The dynamics of bacterial populations associated with corals and the possible role of bacterial pathogens in coral bleaching. PhD thesis, James Cook University.

Lin, Mei-Fang, Luzon, Katrina S., Licuanan, Wilfredo Y., Ablan-Lagman, Maria Carmen, and Chen, Chaolun A. (2011) Seventy-four universal primers for characterizing the complete mitochondrial genomes of scleractinian corals (Cnidaria; Anthozoa). Zoological Studies, 50 (4). pp. 513-524.

Lefèvre, Carine D., and Bellwood, David R. (2011) Temporal variation in coral reef ecosystem processes: herbivory of macroalgae by fishes. Marine Ecology Progress Series, 422. pp. 239-251.

Lawton, R.J., Wing, S.R., and Lewis, A.M. (2010) Evidence for discrete subpopulations of sea perch (Helicolenus ercoides) across four fjords in Fiordland, New Zealand. New Zealand Journal of Marine and Freshwater Research, 44 (4). pp. 309-322.

Littman, Raechel A., Bourne, David G., and Willis, Bette L. (2010) Responses of coral-associated bacterial communities to heat stress differ with Symbiodinium type on the same coral host. Molecular Ecology, 19 (9). pp. 1978-1990.

Lefevre, Carine, and Bellwood, David (2010) Seasonality and dynamics in coral reef macroalgae: variation in condition and susceptibility to herbivory. Marine Biology, 157 (5). pp. 955-965.

Luter, Heidi M., and Duckworth, Alan R. (2010) Influence of size and spatial competition on the bioactivity of coral reef sponges. Biochemical Systematics and Ecology, 38 (2). pp. 146-153.

Luter, Heidi M., Whalan, Stephen, and Webster, Nicole S. (2010) Prevalence of tissue necrosis and brown spot lesions in a common marine sponge. Marine and Freshwater Research, 61 (4). pp. 484-489.

Lemberget, T., McCormick, M.I., and Wilson, D.T. (2009) Environmental influences on the replenishment of lizardfish (family Synodontidae) in Caribbean Panama. Coral Reefs, 28 (3). pp. 737-750.

Littman, Raechel A., Willis, Bette L., Pfeffer, Christian, and Bourne, David G. (2009) Diversities of coral-associated bacteria differ with location, but not species, for three acroporid corals on the Great Barrier Reef. FEMS Microbiology Ecology, 68 (2). pp. 152-163.

Leis, Jeffrey M., Piola, Richard F., Hay, Amanda C., Wen, Colin, and Kan, Kun-Ping (2009) Ontogeny of behaviour relevant to dispersal and connectivity in the larvae of two non-reef demersal, tropical fish species. Marine and Freshwater Research, 60 (3). pp. 211-223.

Lemberget, Tove, and McCormick, Mark I. (2009) Replenishment success linked to fluctuating asymmetry in larval fish. Oecologia, 159 (1). pp. 83-93.

Littman, Raechel A., Willis, Bette L., and Bourne, David G. (2009) Bacterial communities of juvenile corals infected with different Symbiodinium (dinoflagellate) clades. Marine Ecology Progress Series, 389. pp. 45-59.

Lokrantz, J., Nyström, M., Thyresson, M., and Johansson, C. (2008) The non-linear relationship between body-size and function in parrotfishes. Coral Reefs, 27 (4). pp. 967-974.

Linke, S., Norris, R.H., and Pressey, R.L. (2008) Irreplaceability of river networks: towards catchment-based conservation planning. Journal of Applied Ecology, 45 (5). pp. 1486-1495.

Littman, Raechel A., van Oppen, Madeleine J.H., and Willis, Bette L. (2008) Methods for sampling free-living Symbiodinium (zooxanthellae) and their distribution and abundance at Lizard Island (Great Barrier Reef). Journal of Experimental Marine Biology and Ecology, 364 (1). pp. 48-53.

Limbourn, Andrew, Jones, Geoffrey, Munday, Philip, and Srinivasan, Maya (2007) Niche shifts and local competition between two coral reef fishes at their geographic boundary. Marine and Freshwater Research, 58 (12). pp. 1120-1129.

Leggat, William, Hoegh-Guldberg, Ove, Dove, Sophie, and Yellowlees, David (2007) Analysis of an EST library from the dinoflagellate (Symbiodinium sp.) symbiont of reef-building corals. Journal of Phycology, 43 (5). pp. 1010-1021.

Ledlie, M., Graham, N. A. J., Bythell, J. C., Wilson, S. K., Jennings, S., Polunin, N. V. C., and Hardcastle, J. (2007) Phase shifts and the role of herbivory in the resilience of coral reefs. Coral Reefs, 26 (3). pp. 641-653.

Lou, Dong C., Mapstone, Bruce D., Russ, Garry R., Begg, Gavin A., and Davies, Campbell R. (2007) Using otolith weight–age relationships to predict age based metrics of coral reef fish populations across different temporal scales. Fisheries Research, 83 (2-3). pp. 216-227.

Luter, Heidi M., Duckworth, Alan R., and Syms, Craig (2007) Cytotoxic and anti-microbial activity of the sponge Iotrochota sp. as a function of size and spatial competitors. Marine Biology Research, 3 (5). pp. 312-318.

Leggat, W., Ainsworth, T.D., Dove, S., and Hoegh-Guldberg, O. (2006) Aerial exposure influences bleaching patterns. Coral Reefs, 25 (3). p. 452.

Larson, Johan K., and McCormick, Mark I. (2005) The role of chemical alarm signals in facilitating learned recognition of novel chemical cues in a coral reef fish. Animal Behaviour, 69 (1). pp. 51-57.

Little, Angela F., van Oppen, Madeleine J.H., and Willis, Bette (2004) Flexibility in algal endosymbioses shapes growth in reef corals. Science, 304 (5676). pp. 1492-1494.

Laman Trip, Elisabeth Daniele (2004) A multi-scale analysis of population dynamics and sexual size dimorphism in a widely distributed coral reef fish family (Acanthuridae). Masters (Research) thesis, James Cook University.

Lecchini, David, Adjeroud, Mehdi, Pratchett, Morgan S., Cadoret, Laurence, and Galzin, René (2003) Spatial structure of coral reef fish communities in the Ryukyu Islands, southern Japan. Oceanologica Acta, 26. pp. 537-547.

Leis, Jeffrey M., and McCormick, Mark I. (2002) The biology, behavior, and ecology of the pelagic, larval stage of coral reef fishes. In: Sale, Peter F., (ed.) Coral Reef Fishes: dynamic and diversity in a complex ecosystem. Elsevier, San Diego, CA, USA, pp. 171-199.

Lukoschek, Vimoksalehi, and McCormick, Mark I. (2001) Ontogeny of diet changes in a tropical benthic carnivorous fish, Parupeneus barberinus (Mullidae): relationship between foraging behaviour, habitat use, jaw size, and prey selection. Marine Biology, 138 (6). pp. 1099-1113.

Lheknim, Vachira (1995) An evaluation of the relative nursery value of sandy shore surf zones and estuary mouths in tropical North Queensland, Australia. PhD thesis, James Cook University of North Queensland.

Ludvianto, Bayu (1992) A study on the biology of Osangularia cf. venusta (Brady): an epiphytic foraminifera on the intertidal seagrass Halodule uninervis in Shelly Bay, Townsville, North Queensland. PhD thesis, James Cook University of North Queensland.

Lovelock, Catherine Ellen (1991) Adaptation of tropical mangroves to high solar radiation. PhD thesis, James Cook University.

Liston, Peter Wallace (1990) Spatial variability and covariability of chlorophyll and zooplankton on the Great Barrier Reef. PhD thesis, James Cook University.

M

Madin, Joshua S., Hoogenboom, Mia O., Connolly, Sean R., Darling, Emily S., Falster, Daniel S., Huang, Danwei, Keith, Sally A., Mizerek, Toni, Pandolfi, John M., Putnam, Hollie M., and Baird, Andrew H. (2016) A trait-based approach to advance coral reef science. Trends in Ecology & Evolution, 31 (6). pp. 419-428.

McLeod, Ian M., and Clark, Timothy D. (2016) Limited capacity for faster digestion in larval coral reef fish at an elevated temperature. PLoS ONE, 11 (5). pp. 1-13.

Montanari, Stefano R., Hobbs, Jean-Paul A., Pratchett, Morgan S., and Van Herwerden, Lynne (2016) The importance of ecological and behavioural data in studies of hybridisation among marine fishes. Reviews in Fish Biology and Fisheries, 26 (2). pp. 181-198. (In Press)

Munday, Philip L., Watson, Sue-Ann, Parsons, Darren M., King, Alicia, Barr, Neill G., McLeod, Ian M., Allan, Bridie J.M., and Pether, Steve M.J. (2016) Effects of elevated CO2 on early life history development of the yellowtail kingfish, Seriola lalandi, a large pelagic fish. ICES Journal of Marine Science, 73 (3). pp. 641-649.

Magris, Rafael A., Treml, Eric A., Pressey, Robert L., and Weeks, Rebecca (2016) Integrating multiple species connectivity and habitat quality into conservation planning for coral reefs. Ecography, 28. 001-016. (In Press)

McNeil, Mardi A., Webster, Jody M., Beaman, Robin J., and Graham, Trevor L. (2016) New constraints on the spatial distribution and morphology of the Halimeda bioherms of the Great Barrier Reef, Australia. Coral Reefs. (In Press)

Mackenzie, Jock R., Duke, Norman C., and Wood, Apanie L. (2016) The Shoreline Video Assessment Method (S-VAM): using dynamic hyperlapse image acquisition to evaluate shoreline mangrove forest structure, values, degradation and threats. Marine Pollution Bulletin, 109 (2). pp. 751-763. (In Press)

McDuie, Fiona , and Congdon, Bradley C. (2016) Trans-equatorial migration and non-breeding habitat of tropical shearwaters: implications for modelling pelagic important bird areas. Marine Ecology Progress Series, 550. pp. 219-234.

Munroe, S.E.M., Simpfendorfer, C.A., and Heupel, M.R. (2016) Variation in blacktip shark movement patterns in a tropical coastal bay. Environmental Biology of Fishes, 99 (4). pp. 377-389.

Mohamed, A.R., Cumbo, V., Harii, S., Shinzato, C., Chan, C.X., Ragan, M.A., Bourne, D.G., Willis, B.L., Ball, E.E., Satoh, N., and Miller, D.J. (2016) The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome. Molecular Ecology, 25 (13). pp. 3127-3141.

McKinnon, A. David, Doyle, Jason, Duggan, Samantha, Logan, Murray, Lønborg, Christian, and Brinkman, Richard (2015) Zooplankton growth, respiration and grazing on the Australian margins of the tropical Indian and Pacific Oceans. PLoS ONE, 10 (10).

Momigliano, Paolo, Harcourt, Robert, Robbins, William D., and Stow, Adam (2015) Connectivity in grey reef sharks (Carcharhinus amblyrhynchos) determined using empirical and simulated genetic data. Scientific Reports, 5.

Maynard, Jeffrey, van Hooidonk, Ruben, Eakin, C. Mark, Puotinen, Marjetta, Garren, Melissa, Williams, Gareth, Heron, Scott F., Lamb, Joleah, Weil, Ernesto, Willis, Bette, and Harvell, C. Drew (2015) Projections of climate conditions that increase coral disease susceptibility and pathogen abundance and virulence. Nature Climate Change, 5 (7). pp. 688-695.

Miller, G.M., Kroon, F.J., Metcalfe, S., and Munday, P.L. (2015) Temperature is the evil twin: effects of increased temperature and ocean acidification on reproduction in a reef fish. Ecological Applications, 25 (3). pp. 603-620.

Munroe, Samantha E.M., Heupel, Michelle R., Fisk, Aaron T., and Simpfendorfer, Colin A. (2015) Geographic and temporal variation in the trophic ecology of a small-bodied shark: evidence of resilience to environmental change. Canadian Journal of Fisheries and Aquatic Sciences, 72 (3). pp. 343-351.

Matley, J.K., Heupel, M.R., and Simpfendorfer, C.A. (2015) Depth and space use of leopard coralgrouper Plectropomus leopardus using passive acoustic tracking. Marine Ecology Progress Series, 521. pp. 201-216.

McKinnon, A.D., Duggan, S., Holliday, D., and Brinkman, R. (2015) Plankton community structure and connectivity in the Kimberley-Browse region of NW Australia. Estuarine, Coastal and Shelf Science , 153. pp. 156-167.

Munday, Philip L. (2015) Evolutionary ecology: survival of the fittest. Nature Climate Change, 5. pp. 102-103.

Munroe, Samantha Elizabeth Mitchell (2015) Habitat and dietary selectivity of nearshore shark populations. PhD thesis, James Cook University.

McDuie, Fiona, Weeks, Scarla J., Miller, Mark G.R., and Congdon, Bradley C. (2015) Breeding tropical shearwaters use distant foraging sites when self-provisioning. Marine Ornithology, 43. pp. 123-129.

McKenna, Skye, Jarvis, Jessie, Sankey, Tonia, Reason, Carissa, Coles, Robert, and Rasheed, Michael (2015) Declines of seagrasses in a tropical harbour, North Queensland, Australia, are not the result of a single event. Journal of Biosciences, 40 (2). pp. 389-398.

McAllister, Jaime D., Barnett, Adam, Lyle, Jeremy M., and Semmens, Jayson M. (2015) Examining the functional role of current area closures used for the conservation of an overexploited and highly mobile fishery species. ICES Journal of Marine Science, 72 (8). pp. 2234-2244.

Matley, Jordan K., Fisk, Aaron T., and Dick, Terry A. (2015) Foraging ecology of ringed seals (Pusa hispida), beluga whales (Delphinapterus leucas) and narwhals (Monodon monoceros) in the Canadian High Arctic determined by stomach content and stable isotope analysis. Polar Research, 34. pp. 1-11.

McLeod, I.M., McCormick, M.I., Munday, P.L., Clark, T.D., Wenger, A.S., Brooker, R.M., Takahashi, M., and Jones, G.P. (2015) Latitudinal variation in larval development of coral reef fishes: implications of a warming ocean. Marine Ecology Progress Series, 521. pp. 129-141.

Mitchell, Matthew D., Chivers, Douglas P., McCormick, Mark I., and Ferrari, Maud C.O. (2015) Learning to distinguish between predators and non-predators: understanding the critical role of diet cues and predator odours in generalisation. Scientific Reports, 5. pp. 1-10.

Mazel, Florent, Renaud, Julien, Guilhaumon, François, Mouillot, David, Gravel, Dominique, and Thuiller, Wilfried (2015) Mammalian phylogenetic diversity-area relationships at a continental scale. Ecology, 96 (10). pp. 2814-2822.

MacNeil, M. Aaron, and Connolly, Sean R. (2015) Multi-scale patterns and processes in reef fish abundance. In: Mora, Camilo, (ed.) Ecology of Fishes on Coral Reefs. Cambridge University Press, Cambridge, UK, pp. 116-124.

Munroe, S.E.M., Heupel, M.R., Fisk, A.T., Logan, M., and Simpfendorfer, C.A. (2015) Regional movement patterns of a small-bodied shark revealed by stable-isotope analysis. Journal of Fish Biology, 86 (5). pp. 1567-1586.

Munday, Philip L. (2014) Transgenerational acclimation of fishes to climate change and ocean acidification. F1000 Prime Reports, 6. pp. 1-7.

Mouillot, David, Villéger, Sébastien, Parravicini, Valeriano, Kulbicki, Michel, Ernesto Arias-González, Jesus, Bender, Mariana, Chabanet, Pascale, Floeter, Sergio R., Friedlander, Alan, Vigliola, Laurent, and Bellwood, David R. (2014) Functional over-redundancy and high functional vulnerability in global fish faunas on tropical reefs. Proceedings of the National Academy of Sciences of the United States of America, 111 (38). pp. 13757-13762.

Munday, Philip L., Cheal, Alistair J., Dixson, Danielle L., Rummer, Jodie L., and Fabricius, Katharina E. (2014) Behavioural impairment in reef fishes caused by ocean acidification at CO2 seeps. Nature Climate Change, 4. pp. 487-492.

Miller, Gabrielle May (2014) Intergenerational effects of climate change on a coral reef fish, Amphiprion melanopus. PhD thesis, James Cook University.

Mooney, Christopher James (2014) Statoliths of cubozoan jellyfishes: their utility to discriminate taxa and elucidate population ecology. PhD thesis, James Cook University.

McLeod, Ian Michael (2014) Effects of ocean warming on the larval development of coral reef fishes. PhD thesis, James Cook University.

McNamara, M.K.A., Miller, T.L., and Cribb, T.H. (2014) Evidence for extensive cryptic speciation in trematodes of butterflyfishes (Chaetodontidae) of the tropical Indo-West Pacific. International Journal for Parasitology, 44 (1). pp. 37-48.

Moore, Brad R., and Simpfendorfer, Colin A. (2014) Assessing connectivity of a tropical estuarine teleost through otolith elemental profiles. Marine Ecology Progress Series, 501. pp. 225-238.

McClanahan, Tim R., Ateweberhan, Mebrahtu, Darling, Emily S., Graham, Nicholas A.J., and Muthiga, Nyawira (2014) Biogeography and change among regional coral communities across the Western Indian Ocean. PLoS ONE, 9 (4). pp. 1-9.

McClanahan, Timothy R., Graham, Nicholas A.J., and Darling, Emily S. (2014) Coral reefs in a crystal ball: predicting the future from the vulnerability of corals and reef fishes to multiple stressors. Current Opinion in Environmental Sustainability, 7. pp. 59-64.

Munroe, S.E.M., Simpfendorfer, Colin, and Heupel, M.R. (2014) Defining shark ecological specialisation: concepts, context, and examples. Reviews in Fish Biology and Fisheries, 24 (1). pp. 317-331.

McLean, Montana F., Simpfendorfer, Colin A., Heupel, Michelle R., Dadswell, Michael J., and Stokesbury, Michael J.W. (2014) Diversity of behavioural patterns displayed by a summer feeding aggregation of Atlantic sturgeon in the intertidal region of Minas Basin, Bay of Fundy, Canada. Marine Ecology Progress Series, 496. pp. 59-69.

Marsh, H.D. (2014) Family Dugongidae (Dugong). In: Wilson, Don E., and Mittermeier, Russell A., (eds.) Handbook of the Mammals of the World: volume 4: sea mammals. Lynx Edicions, Barcelona, Spain, pp. 564-573.

Munroe, S.E.M., Simpfendorfer, C.A., and Heupel, M.R. (2014) Habitat and space use of an abundant nearshore shark, Rhizoprionodon taylori. Marine and Freshwater Research, 65 (11). pp. 959-968.

Madin, Joshua S., Baird, Andrew H., Dornelas, Maria, and Connolly, Sean R. (2014) Mechanical vulnerability explains size-dependent mortality of reef corals. Ecology Letters, 17 (8). pp. 1008-1015.

McLeod, I.M., Parsons, D.M., Morrison, M.A., Van Dijken, S.G., and Taylor, R.B. (2014) Mussel reefs on soft sediments: a severely reduced but important habitat for macroinvertebrates and fishes in New Zealand. New Zealand Journal of Marine and Freshwater Research, 48 (1). pp. 48-59.

Munday, Philip L., Watson, Sue-Ann, Chung, Wen-Sung, Marshall, N. Justin, and Nilsson, Göran (2014) Response to 'The importance of accurate CO2 dosing and measurement in ocean acidification studies'. Journal of Experimental Biology, 217. pp. 1828-1829.

Manassa, R.P., McCormick, M.I., Dixson, D.L., Ferrari, M.C.O., and Chivers, D.P. (2014) Social learning of predators by coral reef fish: does observer number influence acquisition of information? Behavioral Ecology and Sociobiology, 68 (8). pp. 1237-1244.

Madsen, Alisha, Madin, Joshua S., Tan, Chun-Hong, and Baird, Andrew H. (2014) The reproductive biology of the scleractinian coral Plesiastrea versipora in Sydney Harbour, Australia. Sexuality and Early Development in Aquatic Organisms, 1 (1). pp. 25-33.

Munday, Philip L., Warner, Robert R., Monro, Keyne, Pandolfi, John M., and Marshall, Dustin J. (2013) Predicting evolutionary responses to climate change in the sea. Ecology Letters, 16 (12). pp. 1488-1500.

Mouillot, David, De Bortoli, Julien, Leprieur, Fabien, Parravicini, Valeriano, Kulbicki, Michel, and Bellwood, David R. (2013) The challenge of delineating biogeographical regions: nestedness matters for Indo-Pacific coral reef fishes. Journal of Biogeography, 40 (12). pp. 2228-2237.

Miller, Terrence L., Small, Hamish J., Peemoeller, Bhae-Jin, Gibbs, David A., and Shields, Jeffrey D. (2013) Experimental infections of Orchitophrya stellarum (Scuticociliata) in American blue crabs (Callinectes sapidus) and fiddler crabs (Uca minax). Journal of Invertebrate Pathology, 114 (3). pp. 346-355.

Matley, Jordan K., Fisk, Aaron T., and Dick, Terry A. (2013) The foraging ecology of Arctic cod (Boreogadus saida) during open water (July–August) in Allen Bay, Arctic Canada. Marine Biology, 160 (11). pp. 2993-3004.

Manassa, R.P., Dixson, D.L., McCormick, M.I., and Chivers, D.P. (2013) Coral reef fish incorporate multiple sources of visual and chemical information to mediate predation risk. Animal Behaviour, 86 (4). pp. 717-722.

Miller, Gabrielle M., Watson, Sue-Ann, McCormick, Mark I., and Munday, Philip L. (2013) Increased CO₂ stimulates reproduction in a coral reef fish. Global Change Biology, 19 (10). pp. 3037-3045.

Munday, Philip L., Pratchett, Morgan S., Dixson, Danielle L., Donelson, Jennifer M., Endo, Geoff G.K., Reynolds, Adam D., and Knuckey, Richard (2013) Elevated CO2 affects the behavior of an ecologically and economically important coral reef fish. Marine Biology, 160 (8). pp. 2137-2144.

Magris, R.A., Mills, M., Fuentes, M.M.P.B., and Pressey, R.L. (2013) Analysis of progress towards a comprehensive system of Marine Protected Areas in Brazil. Natureza & Conservacao, 11 (1). pp. 81-87.

Mouritsen, Henrik, Atema, Jelle, Kingsford, Michael J., and Gerlach, Gabriele (2013) Sun compass orientation helps coral reef fish larvae return to their natal reef. PLoS ONE, 8 (6). pp. 1-16.

MacIntosh, Hugh (2013) Competition and coexistence in tropical Australian shipworms. PhD thesis, James Cook University.

Manassa, R.P., and McCormick, M.I. (2013) Social learning improves survivorship at a life-history transition. Oecologia, 171 (4). pp. 845-852.

Messmer, V., Pratchett, M.S., and Clark, T.D. (2013) Capacity for regeneration in crown-of-thorns starfish, Acanthaster planci. Coral Reefs, 32 (2). p. 461.

McLeod, Ian M., Rummer, Jodie L., Clark, Timothy D., Jones, Geoffrey P., McCormick, Mark I., Wenger, Amelia S., and Munday, Philip L. (2013) Climate change and the performance of larval coral reef fishes: the interaction between temperature and food availability. Conservation Physiology, 1 (1). pp. 1-12.

Manassa, R.P., McCormick, M.I., Chivers, D.P., and Ferrari, M.C.O. (2013) Social learning of predators in the dark: understanding the role of visual, chemical and mechanical information. Proceedings of the Royal Society of London Series B, Biological Sciences, 280 (1765). pp. 1-8.

Manassa, R.P., McCormick, M.I., and Chivers, D.P. (2013) Socially acquired predator recognition in complex ecosystems. Behavioral Ecology and Sociobiology, 67 (7). pp. 1033-1040.

Munday, Philip L., McCormick, Mark I., Meekan, Mark, Dixson, Danielle L., Watson, Sue-Ann, Chivers, Douglas P., and Ferrari, Maud C.O. (2012) Selective mortality associated with variation in CO2 tolerance in a marine fish. Ocean Acidification, 1 (1). pp. 1-5.

McCormick, Mark I. (2012) Lethal effects of habitat degradation on fishes through changing competitive advantage. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1744). pp. 3899-3904.

Manassa, R.P., and McCormick, M.I. (2012) Risk assessment via predator diet cues in a coral reef goby. Journal of Experimental Marine Biology and Ecology, 426-427. pp. 48-52.

McCormack, Catherine, Chartrand, Katie, and Rasheed, Michael (2012) Impacts of a large-scale flood event on sub-tropical intertidal seagrass meadows. In: Coast to Coast 2012: living on the edge: program and abstract book, p. 73. From: Coast to Coast 2012: Living on the Edge, 17-21 September 2012, Brisbane, QLD, Australia.

Macintosh, Hugh, De Nys, Rocky, and Whalan, Stephen (2012) Shipworms as a model for competition and coexistence in specialized habitats. Marine Ecology Progress Series, 461. pp. 95-105.

Manassa, R.P., and McCormick, M.I. (2012) Social learning and acquired recognition of a predator by a marine fish. Animal Cognition, 15 (4). pp. 559-565.

Mooney, C. J., and Kingsford, M. J. (2012) Sources and movements of Chironex fleckeri medusae using statolith elemental chemistry. Hydrobiologia, 690 (1). pp. 269-277.

Mitchell, Matthew David (2012) The role of chemical alarm cues in risk assessment and predator recognition in coral reef fishes. PhD thesis, James Cook University.

Moya, A., Huisman, L., Ball, E.E., Hayward, D.C., Grasso, L.C., Chua, C.M., Woo, H.N., Gattuso , J.-P, Forêt, S., and Miller, D.J. (2012) Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2-driven acidification during the initiation of calcification. Molecular Ecology, 21 (10). pp. 2440-2454.

Muller, Erinn M., Raymundo, Laurie J., Willis, Bette L., Haapkylä, Jessica, Yusuf, Syafyudin, Wilson, Joanne R., and Harvell, Drew C. (2012) Coral health and disease in the Spermonde Archipelago and Wakatobi, Sulawesi. Journal of Indonesian Coral Reefs, 1 (3). pp. 147-159.

Montanari, Stefano, Van Herwerden, Lynne, Pratchett, Morgan, Hobbs, Jean-Paul, and Fugedi, Anneli (2012) Reef fish hybridization: lessons learnt from butterflyfishes (genus Chaetodon). Ecology and Evolution, 2 (2). pp. 310-328.

McCowan, Dominique M., Pratchett, Morgan S., and Baird, Andrew H. (2012) Bleaching susceptibility and mortality among corals with differing growth forms. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-6. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Madin, Joshua S., Hughes, Terry P., and Connolly, Sean R. (2012) Calcification, storm damage and population resilience of tabular corals under climate change. PLoS ONE, 7 (10). pp. 1-10.

Mitchell, Matthew D., Cowman, Peter F., and McCormick, Mark I. (2012) Chemical alarm cues are conserved within the coral reef fish family Pomacentridae. PLoS ONE, 7 (10). pp. 1-7.

Messmer, Vanessa, Jones, Geoffrey, Munday, Philip, and Planes, Serge (2012) Concordance between genetic and species diversity in coral reef fishes across the pacific ocean biodiversity gradient. Evolution, 66 (12). pp. 3902-3917.

Minello, Thomas J., Rozas, Lawrence P., and Baker, Ronald (2012) Geographic variability in salt marsh flooding patterns may affect nursery value for fishery species. Estuaries and Coasts, 35 (2). pp. 501-514.

Munday, Philip L., McCormick, Mark I., and Nilsson, Göran E. (2012) Impact of global warming and rising CO₂ levels on coral reef fishes: what hope for the future? The Journal of Experimental Biology, 215. pp. 3865-3873.

Madin, Joshua S., Hoogenboom, Mia O., and Connolly, Sean R. (2012) Integrating physiological and biomechanical drivers of population growth over environmental gradients on coral reefs. The Journal of Experimental Biology, 215 (6). pp. 968-976.

McCormick, Mark I., and Weaver, Christine J. (2012) It pays to be pushy: intracohort interference competition between two reef fishes. PLoS ONE, 7 (8). pp. 1-12.

Malerba, Martino E., Connolly, Sean R., and Heimann, Kirsten (2012) Nitrate–nitrite dynamics and phytoplankton growth: formulation and experimental evaluation of a dynamic model. Limnology and Oceanography, 57 (5). pp. 1555-1571.

Maddams, Jessica Claire, and McCormick, Mark Ian (2012) Not all offspring are created equal: variation in larval characteristics in a serially spawning damselfish. PLoS ONE, 7 (11). pp. 1-10.

Moore, B.R., Welch, D.J., Newman, S.J., and Lester, R.J.G. (2012) Parasites as indicators of movement and population connectivity of a non-diadromous, tropical estuarine teleost: king threadfin Polydactylus macrochir. Journal of Fish Biology, 81 (1). pp. 230-252.

Miller, Gabrielle M., Watson, Sue-Ann, Donelson, Jennifer M., McCormick, Mark I., and Munday, Philip L. (2012) Parental environment mediates impacts of increased carbon dioxide on a coral reef fish. Nature Climate Change, 2. pp. 858-861.

Munday, Philip L., Cheal, Alistair J., Graham, Nicholas A.J., Meekan, Mark, Pratchett, Morgan S., Sheaves, Marcus, Sweatman, Hugh, and Wilson, Shaun K. (2012) Tropical coastal fish. In: Ploczanska, E.S., Hobday, A.J., and Richardson, A.J., (eds.) A Marine Climate Change Impacts and Adaptation Report Card for Australia. CSIRO Marine and Atmospheric Research, Brisbane, QLD, Australia, pp. 281-306.

McClounan, S., and Seymour, J. (2012) Venom and cnidome ontogeny of the cubomedusae Chironex fleckeri. Toxicon, 60 (8). pp. 1335-1341.

Messmer, Vanessa, Jones, Geoffrey P., Munday, Philip L., Holbrook, Sally J., Schmitt, Russell J., and Brooks, Andrew J. (2011) Habitat biodiversity as a determinant of fish community structure on coral reefs. Ecology, 92 (12). pp. 2285-2298.

Moore, Bradley Roland (2011) Movement, connectivity and population structure of a large, non-diadromous, tropical estuarine teleost. PhD thesis, James Cook University.

Muchlisin, Z.A., Baird, Andrew H., Nayaya, Ahmad, Musman, Musri, Mudatsir, , Sugito, , and Alvisyahrin, Teuku (2011) Proceeding of Annual International Conference Syiah Kuala University 2011. Syiah Kuala University Press, Banda Aceh, Indonesia.

McClanahan, Tim R., and Cinner, Joshua E. (2011) Adapting to a changing environment: confronting the consequences of climate change. Oxford University Press, New York, NY, USA.

Mouillot, David, Albouy, Camille, Guilhaumon, François, Lasram, Frida Ben Rais, Coll, Marta, Devictor, Vincent, Meynard, Christine N., Pauly, Daniel, Tomasini, Jean Antoine, Troussellier, Marc, Velez, Laure, Watson, Reg, Douzery, Emmanuel J.P., and Mouquet, Nicolas (2011) Protected and threatened components of fish biodiversity in the Mediterranean Sea. Current Biology, 21 (12). pp. 1044-1050.

Mora, Camilo, Aburto-Oropeza, Octavio, Ayala Bocos, Arturo, Ayotte, Paula M., Banks, Stuart, Bauman, Andrew G., Beger, Maria, Bessudo, Sandra, Booth, David J., Brokovich, Eran, Brooks, Andrew, Chabanet, Pascal, Cinner, Joshua E., Cortés, Jorge, Cruz-Motta, Juan J., Cupul Magaña, Amilcar, DeMartini, Eward E., Edgar, Graham J., Feary, David A., Ferse, Sebastian C.A., Friedlander, Alan M., Gaston, Kevin J., Gough, Charlotte, Graham, Nicholas A.J., Green, Alison, Guzman, Hector, Hardt, Marah, Kulbicki, Michel, Letourneur, Yves, López Pérez, Andres, Loreau, Michel, Loya, Yossi, Martinez, Camilo, Mascareñas-Osorio, Ismael, Morove, Tau, Nadon, Marc-Olivier, Nakamura, Yohei, Paredes, Gustavo, Polunin, Nicholas V.C., Pratchett, Morgan S., Reyes Bonilla, Héctor, Rivera, Fernando, Sala, Enric, Sandin, Stuart A., Soler, German, Stuart-Smith, Rick, Tessier, Emmanuel, Tittensor, Derek P., Tupper, Mark, Usseglio, Paolo, Vigliola, Laurent, Wantiez, Laurent, Williams, Ivor, Wilson, Shaun K., and Zapata, Fernando A. (2011) Global human footprint on the linkage between biodiversity and ecosystem functioning in reef fishes. PLoS Biology, 9 (4). pp. 1-9.

Mills, Morena, Rasch, Ron, Siebeck, Ulrike E., and Collin, Shaun P. (2011) Exogenous material in the inner ear of the adult Port Jackson shark, Heterodontus portusjacksoni (Elasmbranchii). The Anatomical Record, 294 (3). pp. 373-378.

Munday, Philip L., Gagliano, Monica, Donelson, Jennifer M., Dixson, Danielle, and Thorrold, Simon (2011) Ocean acidification does not affect the early life history development of a tropical marine fish. Marine Ecology Progress Series, 423. pp. 211-221.

Maynard, J.A., Anthony, K.R.N., Harvell, C.D., Burgman, M.A., Beeden, R., Sweatman, H., Heron, S.F., Lamb, J.B., and Willis, B.L. (2011) Predicting outbreaks of a climate-driven coral disease in the Great Barrier Reef. Coral Reefs, 30 (2). pp. 485-495.

McCowan, Dominique M., Pratchett, Morgan, Paley, Allison, Seeley, Michelle, and Baird, Andrew (2011) A comparison of two methods of obtaining densities of zooxanthellae in Acropora millepora. Galaxea, Journal of Coral Reef Studies, 13. pp. 29-34.

Mydlarz, Laura D., and Palmer, Caroline V. (2011) The presence of multiple phenoloxidases in Caribbean reef-building corals. Comparative Biochemistry and Physiology, Part A, 159 (4). pp. 372-378.

Munk, Peter, Hansen, Michael M., Maes, Gregory E., Nielsen, Torkel G., Castonguay, Martin, Riemann, Lasse, Sparholt, Henrik, Als, Thomas D., Aarestrup, Kim, Andersen, Nikolaj G., and Bachler, Mirjam (2010) Oceanic fronts in the Sargasso Sea control the early life and drift of Atlantic eels. Proceedings of the Royal Society of London Series B, Biological Sciences, 277 (1700). pp. 3593-3599.

MacNeil, M. Aaron, Graham, Nicholas A.J., Cinner, Joshua E., Dulvy, Nicholas K., Loring, Philip A., Jennings, Simon, Polunin, Nicholas V., Fisk, Aaron T., and McClanahan, Tim R. (2010) Transitional states in marine fisheries: adapting to predicted global change. Proceedings of the Royal Society of London Series B, Biological Sciences, 365 (1558). pp. 3753-3763.

Magnusson, Marie, Heimann, Kirsten, Quayle, Pamela, and Negri, Andrew P. (2010) Additive toxicity of herbicide mixtures and comparative sensitivity of tropical benthic microalgae. Marine Pollution Bulletin, 60 (11). pp. 1978-1987.

McCormick, Mark I., and Meekan, Mark G. (2010) The importance of attitude: the influence of behaviour on survival at an ontogenetic boundary. Marine Ecology Progress Series, 407. pp. 173-185.

McCormick, Mark I., Ryen, Christopher A., Munday, Philip L., and Walker, Stefan P.W. (2010) Differing mechanisms underlie sexual size-dimorphism in two populations of a sex-changing fish. PLoS ONE, 5 (5). 1- 8.

Messmer, Vanessa (2010) From genes to ecosystems: patterns, processes and consequences of declining biodiversity in coral reef fish communities. PhD thesis, James Cook University.

Meekan, Mark G., von Kuerthy, Corinna, Mccormick, Mark I., and Radford, Ben (2010) Behavioural mediation of the costs and benefits of fast growth in a marine fish. Animal Behaviour, 79 (4). pp. 803-809.

McCormick, M.I., Moore, J.A.Y., and Munday, P.L. (2010) Influence of habitat degradation on fish replenishment. Coral Reefs, 29 (3). pp. 537-546.

McClanahan, T.R., Sebastian, C. Ruiz, Cinner, J., Maina, J., Wilson, S., and Graham, N.A.J. (2010) Managing fishing gear to encourage ecosystem-based management of coral reefs fisheries. In: Proceedings of the 11th International Coral Reef Symposium, pp. 1012-1016. From: 11th International Coral Reef Symposium, 07 - 11 July 2008, Fort Lauderdale, FL, USA.

Munday, Philip L., Dixson, Danielle L., McCormick, Mark I., Meekan, Mark, Ferrari, Maud C.O., and Chivers, Douglas P. (2010) Replenishment of fish populations is threatened by ocean acidification. Proceedings of the National Academy of Sciences of the United States of America, 107 (29). pp. 12930-12934.

McMahon, K.M., and Waycott, M. (2009) New record for Halophila decipiens Ostenfeld in Kenya based on morphological and molecular evidence. Aquatic Botany, 91 (4). pp. 318-320.

McCormick, Mark I. (2009) Behaviourally Mediated Phenotypic Selection in a Disturbed Coral Reef Environment. PLoS ONE, 4 (9). p. 7096.

Munday, Philip L., Donelson, Jennifer M., Dixson, Danielle L. , and Endo, Geoff G.K. (2009) Effects of ocean acidification on the early life history of a tropical marine fish. Proceedings of the Royal Society of London Series B, Biological Sciences, 276 (1671). pp. 3275-3283.

Munday, Philip L., Crawley, Natalie, and Nilsson, Göran E. (2009) Interacting effects of elevated temperature and ocean acidification on the aerobic performance of coral reef fishes. Marine Ecology Progress Series, 388. pp. 235-242.

Mieog, Jos C., Olsen, Jeanine L., Berkelmans, Ray, Bleuler-Martinez, Silvia A., Willis, Bette L., and van Oppen, Madeleine J.H. (2009) The roles and interactions of symbiont, host and environment in defining coral fitness. PLoS ONE, 4 (7). p. 6364.

Munday, P.L., Leis, J.M., Lough, J.M., Paris, C.B., Kingsford, M.J., Berumen, M.L., and Lambrechts, J. (2009) Climate change and coral reef connectivity. Coral Reefs, 28 (2). pp. 379-395.

McClanahan, T.R., Cinner, J.E., Graham, N.A.J., Daw, T.M., Maina, J., Stead, S.M., Wamukota, A., Brown, K., Venus, V., and Polunin, N.V.C. (2009) Identifying reefs of hope and hopeful actions: contextualizing environmental, ecological, and social parameters to respond effectively to climate change. Conservation Biology, 23 (3). pp. 662-671.

McCook, L.J., Almany, G.R., Berumen, M.L., Day, J.C., Green, A.L., Jones, G.P., Leis, J.M., Planes, S., Russ, G.R., Sale, P.F., and Thorrold, S.R. (2009) Management under uncertainty: guide-lines for incorporating connectivity into the protection of coral reefs. Coral Reefs, 28 (2). pp. 353-366.

Maes, G.E., van Vo, B., Crivelli, A.J., and Volckaert, F.A.M. (2009) Morphological and genetic seasonal dynamics of European eel Anguilla anguilla recruitment in southern France. Journal of Fish Biology, 74 (9). pp. 2047-2068.

Meyer, Eli, Aglyamova, Galina V., Wang, Shi, Buchanan-Carter, Jade, Abrego, David, Colbourne, John K., Willis, Bette L., and Matz, Mikhail V. (2009) Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx. BMC Genomics, 10 (219). pp. 1-18.

McCormick, Mark I. (2009) Indirect effects of heterospecific interactions on progeny size through maternal stress. Oikos, 118 (5). pp. 744-752.

Magnusson, Marie (2009) Effects of priority herbicides and their breakdown products on tropical, estuarine microalgae of the Great Barrier Reef Lagoon. PhD thesis, James Cook University.

Munday, Philip L., Dixson, Danielle L., Donelson, Jennifer M., Jones, Geoffrey P., Pratchett, Morgan S., Devitsina, Galina V., and Døving, Kjell B. (2009) Ocean acidification impairs olfactory discrimination and homing ability of a marine fish. Proceedings of the National Academy of Sciences of the United States of America, 106 (6). pp. 1848-1852.

MacNeil, M. Aaron, Graham, Nicholas A.J., Polunin, Nicholas V.C., Kulbicki, Michel, Galzin, Rene, Harmelin-Vivien, Mireille, and Rushton, Steven P. (2009) Hierarchical drivers of reef-fish metacommunity structure. Ecology, 90 (1). pp. 252-264.

McCormick, M.I., and Gagliano, M. (2009) Carry-over effects - the importance of a good start. In: Proceedings of the 11th International Coral Reef Symposium, Ft. Lauderdale, Florida, July 2008. From: 11th International Coral Reef Symposium 2008, 07 July - 11 July 2008, Fort Lauderdale, FL, USA.

McClanahan, T.R., Weil, E., Cortés, J., Baird, A.H., and Ateweberhan, M. (2009) Consequences of coral bleaching for sessile reef organisms. In: van Oppen , M. J. H. , and Lough, J. M. , (eds.) Coral Bleaching: patterns, processes, causes and consequences. Ecological Studies, 205 . Springer, Berlin, Germany, pp. 121-138.

Meyer, Eli, Davies, Sarah, Wang, Shi, Willis, Bette L., Abrego, David, Juenger, Thomas E., and Matz, Mikhail V. (2009) Genetic variation in responses to a settlement cue and elevated temperature in the reef-building coral Acropora millepora. Marine Ecology Progress Series, 392. pp. 81-92.

Munday, P. L., Ryen, C.A., McCormick, M. I., and Walker, S.P.W. (2009) Growth acceleration, behaviour and otolith check marks associated with sex change in the wrasse Halichoeres miniatus. Coral Reefs, 28 (3). pp. 623-634.

Munday, Philip L., Cheal, Alistair J., Graham, Nicholas A.J., Meekan, Mark, Pratchett, Morgan S., Sheaves, Marcus, Sweatman, Hugh, and Wilson, Shaun K. (2009) Tropical coastal fish. In: Poloczanska, E.S., Hobday, A.J., and Richardson, A.J., (eds.) Marine Climate Change Impacts and Adaptation Report Card for Australia 2009. National Climate Change Adaptation Research Plans Publication 05/09 . National Climate Change Adaptation Research Plans, - .

Miller-Sims, V.C., Gerlach, G., Kingsford, M.J., and Atema, J. (2008) Dispersal in the spiny damselfish, Acanthochromis polyacanthus, a coral reef fish species without a larval pelagic stage. Molecular Ecology, 17 (23). pp. 5036-5048.

MacNeil, M.A., Graham, N.A.J., Conroy, M.J., Fonnesbeck, C.J., Polunin, N.V.C., Rushton, S.P., Chabanet, P., and McClanahan, T.R. (2008) Detection heterogeneity in underwater visual-census data. Journal of Fish Biology, 73 (7). pp. 1748-1763.

Madin, Joshua S., O'Donnell, Michael J., and Connolly, Sean R. (2008) Climate-mediated mechanical changes to post-disturbance coral assemblages. Biology Letters, 4 (5). pp. 490-493.

Munday, Philip L., Jones, Geoffrey P., Pratchett, Morgan S., and Williams, Ashley J. (2008) Climate change and the future for coral reef fishes. Fish and Fisheries, 9 (3). pp. 261-285.

Mapleston, Amos, Welch, David, Begg, Gavin A., McLennan, Mark, Mayer, David, and Brown, Ian (2008) Effect of changes in hook pattern and size on catch rate, hooking location, injury and bleeding for a number of tropical reef fish species. Fisheries Research, 91 (2-3). pp. 203-211.

McCormick, Mark I., and Larson, Johan K. (2008) Effect of hunger on the response to, and the production of, chemical alarm cues in a coral reef fish. Animal Behaviour, 75 (6). pp. 1973-1980.

Milione, Michael, and Zeng, Chaoshu (2008) The effects of temperature and salinity on population growth and egg hatching success of the tropical calanoid copepod, Acartia sinjiensis. Aquaculture, 275 (1-4). pp. 116-123.

Maynard, Jeff A., Turner, Peter, Anthony, Kenneth R.N., Baird, Andrew H., Berkelmans, Ray, Eakin, C. Mark, Johnson, Johanna, Marshall, Paul A., Packer, Gareck R., Rea, Anthony, and Willis, Bette L. (2008) ReefTemp: an interactive monitoring system for coral bleaching using high-resolution SST and improved stress predictors. Geophysical Research Letters, 35. pp. 1-5.

McCormick, M. I., and Manassa, R. (2008) Predation risk assessment by olfactory and visual cues in a coral reef fish. Coral Reefs, 27 (1). pp. 105-113.

Munday, P. L., Kingsford, M.J., O'Callaghan, M., and Donelson, J.M. (2008) Elevated temperature restricts growth potential of the coral reef fish Acanthochromis polyacanthus. Coral Reefs, 27 (4). pp. 927-931.

Meynecke, J-O., Lee, S.Y., and Duke, N.C. (2008) Linking spatial metrics and fish catch reveals the importance of coastal wetland connectivity to inshore fisheries in Queensland, Australia. Biological Conservation, 141 (4). pp. 981-996.

Maynard, J.A., Baird, A.H., and Pratchett, M.S. (2008) Revisiting the Cassandra syndrome; the changing climate of coral reef research. Coral Reefs, 27. pp. 745-749.

Morote, Elvira, Olivar, M. Pilar, Pankhurst, Patricia M., Villate, Fernando, and Uriarte, Ibon (2008) Trophic ecology of bullet tuna Auxis rochei larvae and ontogeny of feeding-related organs. Marine Ecology Progress Series, 353. pp. 243-254.

Mantyka, Chrystal S., and Bellwood, David R. (2007) Macroalgal grazing selectivity among herbivorous coral reef fishes. Marine Ecology Progress Series, 352. pp. 177-185.

Myers, Trina, Atkinson, Ian, and Maynard, Jeff (2007) The Semantic Reef: an eco-informatics approach for modelling coral bleaching within the Great Barrier Reef. In: Proceedings of ERE Environmental Research Event: global problems, local solutions. From: 11th Annual Environmental Postgraduate Conference - Environmental Research Event, 2-5 Dec 2007, Cairns, QLD, Australia.

McCormick, M.I., and Larson, J.K. (2007) Field verification of the use of chemical alarm cues in a coral reef fish. Coral Reefs, 26 (3). pp. 571-576.

McClanahan, T.R., Ateweberhan, M., Sebastian, C. Ruiz, Graham, N. A. J., Wilson, S., Bruggemann, J., and Guillaume, M. (2007) Predictability of coral bleaching from synoptic satellite and in situ temperature observations. Coral Reefs, 26 (3). pp. 695-701.

Mantyka, C.S., and Bellwood, D.R. (2007) Direct evaluation of macroalgal removal by herbivorous coral reef fishes. Coral Reefs, 26 (2). pp. 435-442.

McCormick, Mark I., and Meekan, Mark G. (2007) Social facilitation of selective mortality. Ecology, 88 (6). pp. 1562-1570.

McClanahan, Tim R., Graham, Nicholas A.J., Calnan, Jacqulyn M., and MacNeil, M. Aaron (2007) Towards pristine biomass: reef fish recovery in coral reef marine protected areas in Kenya. Ecological Applications, 17 (4). pp. 1055-1067.

McClanahan , T.R., Ateweberhan, M., Graham, N. A. J., Wilson, S.K., Sebastian, C. Ruiz, Guillaume, M.M.M., and Bruggemann, J.H. (2007) Western Indian Ocean coral communities: bleaching responses and susceptibility to extinction. Marine Ecology Progress Series, 337. pp. 1-13.

Meynecke, Jan-Olaf, Lee, Shing Yip, Duke, Norman C., and Warnken, Jan (2007) Relationships between estuarine habitats and coastal fisheries in Queensland, Australia. Bulletin of Marine Science, 80 (3). pp. 773-793.

Mangubhai, S., Harris, A., and Graham, N.A.J. (2007) Synchronous daytime spawning of the solitary coral Fungia danai (Fungiidae) in the Chagos Archipelago, central Indian Ocean. Coral Reefs, 26 (1). p. 15.

Maes, Gregory E., and Volckaert, Filip A.M. (2007) Challenges for genetic research in European eel management. ICES Journal of Marine Science, 64 (7). pp. 1463-1471.

McCook, Laurence J., Folke, Carl, Hughes, Terry, Nyström, Magnus, Obura, David, and Salm, Rodney (2007) Ecological resilience, climate change, and the Great Barrier Reef. In: Johnson, Joanna E., and Marshall, Paul A., (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority, Townsville, Qld, Australia, pp. 75-96.

Munday, Philip L., Jones, Geoffrey P., Sheaves, Marcus, Williams, Ashley, and Goby, Gillian (2007) Vulnerability of fishes of the Great Barrier Reef to climate change. In: Johnson, Johanna E., and Marshall, Paul A., (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority and Australian Greenhouse Office, Townsville, QLD, Australia, pp. 357-391.

McClanahan, T.R., Graham, N.A.J., Maina, J., Chabanet, P., Bruggemann, J.H., and Polunin, N.V.C. (2007) The influence of instantaneous variation on estimates of coral reef fish populations and communities. Marine Ecology Progress Series, 340. pp. 221-234.

McCormick, Mark I. (2007) A little stress goes a long way: parental stress and population replenishment. In: Connell, Sean D., and Gillanders, Bronwyn M., (eds.) Marine Ecology. Oxford University Press, South Melbourne, VIC, Australia, p. 353.

Munday, Philip L., White, J. Wilson, and Warner, Robert R. (2006) A social basis for the development of primary males in a sex-changing fish. Proceedings of the Royal Society of London Series B: biological sciences, 273 (1603). pp. 2845-2851.

Marriott, Ross J., and Mapstone, Bruce D. (2006) Consequences of inappropriate criteria for accepting age estimates from otoliths, with a case study for a long-lived tropical reef fish. Canadian Journal of Fisheries and Aquatic Sciences, 63 (10). pp. 2259-2274.

McCormick, Mark (2006) Distress a normal part of life for a damsel. Australasian Science, 27. pp. 29-31.

Munday, Philip L., Cardoni, Adrian M., and Syms, Craig (2006) Cooperative growth regulation in coral dwelling fishes. Biology Letters, 2 (3). pp. 355-358.

Marriott, Ross J., and Mapstone, Bruce D. (2006) Geographic influences on and the accuracy and precision of age estimates for the red bass, Lutjanus bohar (Forsskal 1775): a large tropical reef fish. Fisheries Research, 80 (2-3). pp. 322-328.

Muehlig-Hofmann, Annette, Veitayaki, Joeli, Polunin, Nicholas V.C., Stead, Selina, and Graham, Nicholas (2006) Community-based marine resource management in Fiji – from yesterday to tomorrow. In: Proceedings of the 10th International Coral Reef Symposium 2004 (1), pp. 1259-1266. From: 10th International Coral Reef Symposium 2004, 28 June - 2 July 2004, Okinawa, Japan.

Munday, Philip L., Buston, Peter M., and Warner, Robert R. (2006) Diversity and flexibility of sex-change strategies in animals. Trends in Ecology and Evolution, 21 (2). pp. 89-95.

Meynecke, Jan-Olaf, Lee, Shing Yip, Duke, Norman, and Warnken, Jan (2006) Effect of rainfall as a component of climate change on estuarine fish production in Queensland, Australia. Estuarine, Coastal and Shelf Science , 69 (3-4). pp. 491-504.

McAuley, Rory B., Simpfendorfer, Colin A., Hyndes, Glenn .A., Allison, Rick R., Chidlow, Justin A., Newman, Stephen J., and Lenanton, Rod C.J. (2006) Validated age and growth of the sandbar shark, Carcharhinus plumbeus (Nardo, 1827) in the waters of Western Australia. Environmental Biology of Fishes, 77. pp. 385-400.

Miller-Sims, Vanessa, Delaney, Martha, Atema, Jelle, Kingsford, Michael, and Gerlach, Gabriele (2005) DNA microsatellites in Acanthochromis polyacanthus. Molecular Ecology Resources, 5 (4). pp. 841-843.

McCormack, Catherine (2005) Ecological Assessment of the Queensland Coral Fishery: a report to the Australian Government Department of the Environment and Heritage on the ecologically sustainable management of the Queensland Coral Fishery. Report. Queensland Department of Primary Industries and Fisheries, Brisbane, QLD, Australia.

Miller, Dean Kevin (2005) Towards sustainable wildlife tourism experiences for certified scuba divers on coral reefs. PhD thesis, James Cook University.

Messmer, Vanessa, Jones, Geoffrey P., van Herwerden, Lynne, and Munday, Philip L. (2005) Genetic and ecological characterisation of colour dimorphism in a coral reef fish. Environmental Biology of Fishes, 74 (2). pp. 175-183.

Moland, Even, Eagle, Janelle V., and Jones, Geoffrey P. (2005) Ecology and evolution of mimicry in coral reef fishes. In: Gibson, R.N., Atkinson, R.J.A., and Gordon, J.D.M., (eds.) Oceanography and Marine Biology: an annual review. Taylor & Francis, Boca Raton, FL, USA, pp. 455-482.

McClanahan, T.R., and Graham, N. A. J. (2005) Recovery trajectories of coral reef fish assemblages within Kenyan marine protected areas. Marine Ecology Progress Series, 294. pp. 241-248.

Marsh, Helene, De'Ath, Glenn, Gribble, Neil, and Lane, Baden (2005) Historical marine population estimates: triggers or targets for conservation? The dugong case study. Ecological Applications, 15 (2). pp. 481-492.

Madin, Joshua S. (2005) Mechanical limitations of reef corals during hydrodynamic disturbances. Coral Reefs, 24 (4). pp. 630-635.

Messmer, Vanessa, van Herwerden, Lynne, Munday, Philip L., and Jones, Geoffrey P. (2005) Phylogeography of colour polymorphism in the coral reef fish Pseudochromis fuscus, from Papua New Guinea and the Great Barrier Reef. Coral Reefs, 24. pp. 392-402.

Moothien Pillay, Ruby , Willis, Bette, and Terashima, Hiroaki (2005) Trends in the density of zooxanthellae in Acropora millepora (Ehrenberg, 1834) at the Palm Island Group, Great Barrier Reef, Australia. Symbiosis, 38. pp. 209-226.

Mellors, Jane, Waycott, Michelle, and Marsh, Helene (2005) Variation in biogeochemical parameters across intertidal seagrass meadows in the central Great Barrier Reef region. Marine Pollution Bulletin, 51 (1). pp. 335-342.

Munday, Philip L. (2004) Habitat loss, resource specialization, and extinction on coral reefs. Global Change Biology, 10 (10). pp. 1642-1647.

Miller-Sims, Vanessa, Atema, Jelle, Kingsford, Michael J., and Gerlach, Gabrielle (2004) Characterization and isolation of DNA microsatellite primers in the cardinalfish (Apogon doederleini). Molecular Ecology Resources, 4 (3). pp. 336-338.

Munday, Philip L., van Herwerden, Lynne, and Dudgeon, Christine L. (2004) Evidence for sympatric speciation by host shift in the sea. Current Biology, 14 (16). pp. 1498-1504.

Moland, Even, and Jones, Geoffrey P. (2004) Experimental confirmation of aggressive mimicry by a coral reef fish. Oecologia, 140 (4). pp. 676-683.

McCormick, Mark I., and Hoey, Andrew S. (2004) Larval growth history determines juvenile growth and survival in a tropical marine fish. Oikos, 106 (2). pp. 225-242.

Munday, Philip L. (2004) Competitive coexistence of coral-dwelling fishes: the lottery hypothesis revisited. Ecology, 85 (3). pp. 623-628.

Munday, Philip L., Parker, Alyson L., Choat, J. Howard, and Gust, Nick (2004) Sex-specific growth effects in protogynous hermaphrodites. Canadian Journal of Fisheries and Aquatic Sciences, 61 (3). pp. 323-327.

Madin, Joshua Simon (2004) A mechanistic approach to understanding and predicting hydrodynamic disturbance on coral reefs. PhD thesis, James Cook University.

Munday, Philip L., Eyre, Peter J., and Jones, Geoffrey P. (2003) Ecological mechanisms for coexistence of colour polymorphism in a coral-reef fish: an experimental evaluation. Oecologia, 137 (4). pp. 519-526.

Munday, P.L., Schubert, M., Baggio, J.A., Jones, G.P., Caley, M.J., and Grutter, A.S. (2003) Skin toxins and external parasitism of coral-dwelling gobies. Journal of Fish Biology, 62 (4). pp. 976-981.

Mellors, Jane Elizabeth (2003) Sediment and nutrient dynamics in coastal intertidal seagrass of north eastern tropical Australia. PhD thesis, James Cook University.

Marsh, Helene, Arnold, Peter , Freeman, Milton, Haynes, David, Laist, David, Read, Andrew , Reynolds, John , and Kasuya, Toshio (2003) Strategies for conserving marine mammals. In: Gales, Nick, Hindell, Mark, and Kirkwood, Roger, (eds.) Marine Mammals: fisheries, tourism and management issues. CSIRO Publishing, Collingwood, VIC, Australia, pp. 1-19.

Macia, A, Abrantes, K.G.S., and Paula, J. (2003) Thorn fish Terapon jarbua (Forskål) predation on juvenile white shrimp Penaeus indicus H. Milne Edwards and brown shrimp Metapenaeus monoceros (Fabricius): the effect of turbidity, prey density, substrate type and pneumatophore density. Journal of Experimental Marine Biology and Ecology, 291 (1). pp. 29-56.

Marsh, Helene, Penrose, Helen, and Eros, Carole (2003) A future for the dugong. In: Gales, Nick, Hindell, Mark, and Kirkwood, Roger, (eds.) Marine Mammals: fisheries, tourism and management issues. CSIRO Publishing, Collingwood, VIC, Australia, pp. 383-399.

Marnane, Michael John (2001) The trophic role of cardinalfishes (family Apogonidae) on coral reefs. PhD thesis, James Cook University.

Meekan, M.G., Ackerman, J.L., and Wellington, G.M. (2001) Demography and age structures of coral reef damselfishes in the tropical eastern Pacific Ocean. Marine Ecology-Progress Series, 212. pp. 223-232.

Molony, Brett W., and Sheaves, Marcus J. (2001) Challenges of external insemination in a tropical sparid fish, Acanthopagrus berda. Environmental Biology of Fishes, 61 (1). pp. 65-71.

McCook, L.J., Jompa, J., and Diaz-Pulido, G. (2001) Competition between corals and algae on coral reefs: a review of evidence and mechanisms. Coral Reefs, 19 (4). pp. 400-417.

Munday, Philip L. (2001) Fitness consequences of habitat use and competition among coral-dwelling fishes. Oecologia, 128 (4). pp. 585-593.

Michalek-Wagner, K., and Willis, B.L. (2001) Impacts of bleaching on the soft coral Lobophytum compactum. I. Fecundity, fertilization and offspring viability. Coral Reefs, 19 (3). pp. 231-239.

Michalek-Wagner, K., and Willis, B.L. (2001) Impacts of bleaching on the soft coral Lobophytum compactum. II. Biochemical changes in adults and their eggs. Coral Reefs, 19 (3). pp. 240-246.

Munday, Philip L., Jones, Geoffrey P., and Caley, M. Julian (2001) Interspecific competition and coexistence in a guild of coral-dwelling fishes. Ecology, 82 (8). pp. 2177-2189.

Michalek-Wagner, K. (2001) Seasonal and sex-specific variations in levels of photo-protecting mycosporine-like amino acids (MAAs) in soft corals. Marine Biology, 139 (4). pp. 651-660.

Michalek-Wagner, K., Bourne, D.J., and Bowden, B.F. (2001) The effects of different strains of zooxanthellae on the secondary-metabolite chemistry and development of the soft-coral host Lobophytum compactum. Marine Biology, 138 (4). pp. 753-760.

Marnane, M.J. (2000) Site fidelity and homing behaviour in coral reef cardinalfishes. Journal of Fish Biology, 57 (6). pp. 1590-1600.

Marshall, P.A., and Baird, A.H. (2000) Bleaching of corals on the Great Barrier Reef: differential susceptibilities among taxa. Coral Reefs, 19 (2). pp. 155-163.

Munday, Philip L. (2000) Changing sex. Nature Australia, 26 (11). pp. 51-60.

Michalek-Wagner, Kirsten, and Bowden, Bruce F. (2000) Effects of bleaching on secondary metabolite chemistry of alcyonacean soft corals. Journal of Chemical Ecology, 26 (7). pp. 1543-1562.

Munday, Philip L. (2000) Interactions between habitat use and patterns of abundance in coral-dwelling fishes of the genus Gobiodon. Environmental Biology of Fishes, 58 (4). pp. 355-369.

Moltschaniwskyj, Natalie A., and Semmens, Jayson M. (2000) Limited use of stored energy reserves for reproduction by the tropical loliginid squid Photololigo sp. Journal of Zoology, 251 (3). pp. 307-313.

McCauley, R.D., and Cato, D.H. (2000) Patterns of fish calling in a nearshore environment in the Great Barrier Reef. Philosophical Transactions of the Royal Society of London Series B-Biological SciencesPhilosophical Transactions of the Royal Society of London Series, 355. pp. 1289-1293.

Michalek-Wagner, Kirsten (1999) The chemical ecology of the soft coral-zooxanthellae association and its signficance to the bleaching process. PhD thesis, James Cook University.

Molony, B.W., and Sheaves, M.J. (1998) Otolith increment widths and lipid contents during starvation and recovery feeding in adult Ambassis vachelli (Richardson). Journal of Experimental Marine Biology and Ecology, 221. pp. 257-276.

Molony, Brett W., and Sheaves, Marcus J. (1998) Variations in condition and body constitution in a tropical estuarine fish with year-round recruitment. Mangroves and Salt Marshes , 2 (3). pp. 177-185.

Manthachitra, Vipoosit (1996) Reef fish assemblages on near-shore coral reefs: the effects of habitat structure, degradation and rehabilitation. PhD thesis, James Cook University of North Queensland.

Moltschaniwskyj, N.A., and Doherty, P.J. (1995) Cross-shelf distribution patterns of tropical juvenile cephalopods sampled with light-traps. Marine and Freshwater Research, 46 (4). pp. 707-714.

Musso, Barbara Maria (1994) Internal bioerosion of in situ living and dead corals on the Great Barrier Reef. PhD thesis, James Cook University of North Queensland.

Moltschaniwskyj, Natalie Ann (1994) Dynamics of growth and development in tropical loliginid squid Photololigo species. PhD thesis, James Cook University of North Queensland.

Moltschaniwskyj, Natalie A., and Doherty, Peter J. (1994) Distribution and abundance of two juvenile tropical Photololigo species (Cephalopoda: Loliginidae) in the central Great Barrier Reef Lagoon. Fishery Bulletin, 92 (2). pp. 302-312.

Martin-Smith, Keith Michael (1993) Abundance of mobile epifauna: The role of habitat complexity and predation by fishes. Journal of Experimental Marine Biology and Ecology, 174 (2). pp. 243-260.

Martin-Smith, Keith (1993) The phenology of four species of Sargassum at Magnetic Island, Australia. Botanica Marina, 36 (4). pp. 327-334.

Mingoa, Sylvia Suzanne M. (1990) The influence of environmental factors on juvenile Tridacna gigas. PhD thesis, James Cook University of North Queensland.

Mingoa, S. Suzanne M. (1988) Photoadaptation in juvenile Tridacna gigas. In: Copland, J.W., and Lucas, J.S., (eds.) Giant Clams in Asia and the Pacific. ACIAR Monograph Series, 9 . Australian Centre for International Agricultural Research, Canberra, ACT, Australia, pp. 145-150.

Meek, Susan Denise (1982) Structure, growth and regeneration in the astrocoeniid scleractinian coral, Acropora formosa. PhD thesis, James Cook University.

Muffley, Richard S. (1981) Benthic fauna of a tropical sandy shore in the Townsville region. Masters (Research) thesis, James Cook University.

N

Nay, Tiffany J., Johansen, Jacob L., Habary, Adam, Steffensen, John F., and Rummer, Jodie L. (2015) Behavioural thermoregulation in a temperature-sensitive coral reef fish, the five-lined cardinalfish (Cheilodipterus quinquelineatus). Coral Reefs, 34 (4). pp. 1261-1265.

Nagelkerken, Ivan, Sheaves, Marcus, Baker, Ronald, and Connolly, Rod M. (2015) The seascape nursery: a novel spatial approach to identify and manage nurseries for coastal marine fauna. Fish and Fisheries, 16 (2). pp. 362-371.

Nash, Kirsty L., Allen, Craig, Barichievy, Chris, Nyström, Magnus, Sundstrom, Shana, and Graham, Nicholas A.J. (2014) Habitat structure and body size distributions: cross-ecosystem comparison for taxa with determinate and indeterminate growth. Oikos, 123 (8). pp. 971-983.

Nash, Kirsty L. (2014) Assessment of scale dependent function in reef fish, and application to the evaluation of coral reef resilience. PhD thesis, James Cook University.

Noble, Mae M., Pratchett, Morgan S., Coker, Darren J., Cvitanovic, Christopher, and Fulton, Christopher J. (2014) Foraging in corallivorous butterflyfish varies with wave exposure. Coral Reefs, 33 (2). pp. 351-361.

Nash, Kirsty L., Graham, Nicholas A.J., and Bellwood, David R. (2013) Fish foraging patterns, vulnerability to fishing, and implications for the management of ecosystem function across scale. Ecological Applications, 23 (7). pp. 1632-1644.

Nash, Kirsty L., Graham, Nicholas A.J., Wilson, Shaun K., and Bellwood, David R. (2013) Cross-scale habitat structure drives fish body size distributions on coral reefs. Ecosystems, 16 (3). pp. 478-490.

Nicolet, K.J., Hoogenboom, M.O., Gardiner, N.M., Pratchett, M.S., and Willis, B.L. (2013) The corallivorous invertebrate Drupella aids in transmission of brown band disease on the Great Barrier Reef. Coral Reefs, 32 (2). pp. 585-595.

Nash, Kirsty L., Graham, Nicholas A.J., Januchowski-Hartley, Fraser A., and Bellwood, David R. (2012) Influence of habitat condition and competition on foraging behaviour of parrotfishes. Marine Ecology Progress Series, 457. pp. 113-124.

Noonan, Sam H.C., Jones, Geoffrey P., and Pratchett, Morgan S. (2012) Coral size, health and structural complexity: effects on the ecology of a coral reef damselfish. Marine Ecology Progress Series, 456. pp. 127-137.

Nesa, Badrun, Baird, Andrew H., Harii, Saki, Yakovleva, Irina, and Hidaka, Michio (2012) Algal symbionts increase DNA damage in coral planulae exposed to sunlight. Zoological Studies, 51 (1). pp. 12-17.

Nowicki, Jessica P., Miller, Gabrielle M., and Munday, Philip L. (2012) Interactive effects of elevated temperature and CO2 on foraging behavior of juvenile coral reef fish. Journal of Experimental Marine Biology and Ecology, 412. pp. 46-51.

Nilsson, Göran, Dixson, Danielle L., Domenici, Paolo, McCormick, Mark I., Sørensen, Christina, Watson, Sue-Ann, and Munday, Philip L. (2012) Near-future carbon dioxide levels alter fish behaviour by interfering with neurotransmitter function. Nature Climate Change, 2. pp. 201-204.

Nishikawa, Jun, Fitzpatrick, Richard, Reimer, James D., Beaman, Robin J., Yamamoto, Hiroyuki, and Lindsay, Dhugal J. (2011) In situ observation of Denise's pygmy seahorse Hippocampus denise associated with a gorgonian coral Annella reticulata at Osprey Reef, Australia. Galaxea, Journal of Coral Reef Studies, 13 (1). pp. 25-26.

Nilsson, Göran E., Östlund-Nilsson, Sara, and Munday, Philip L. (2010) Effects of elevated temperature on coral reef fishes: loss of hypoxia tolerance and inability to acclimate. Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 156 (4). pp. 389-393.

Nagelkerken, I., Van der Velde, G., Wartenbergh, S.L.J., Nugues, M.M., and Pratchett, M.S. (2009) Cryptic dietary components reduce dietary overlap among sympatric butterflyfishes (Chaetodontidae). Journal of Fish Biology, 75 (6). pp. 1123-1143.

Nilsson, Göran E., Crawley, Natalie, Lunde, Ida G., and Munday, Philip L. (2009) Elevated temperature reduces the respiratory scope of coral reef fishes. Global Change Biology, 15 (6). pp. 1405-1412.

Nilsson, G.E., Hobbs, J.P.A., Östlund-Nilsson, S., and Munday, P.L. (2007) Hypoxia tolerance and air-breathing ability correlate with habitat preference in coral-dwelling fishes. Coral Reefs, 26 (2). pp. 241-248.

Nylund, G.M., Gribben, P.E., de Nys, Rocky, Steinberg, P.D., and Pavia, H. (2007) Surface chemistry versus whole-cell extracts: antifouling tests with seaweed metabolites. Marine Ecology Progress Series, 329. pp. 73-84.

Nardi, Kim, Newman, Stephen J., Moran, Michael J., and Jones, Geoffrey P. (2006) Vital demographic statistics and management of the baldchin groper (Choerodon rubescens) from the Houtman Abrolhos Islands. Marine and Freshwater Research, 57 (5). pp. 485-496.

Nilsson, Goran E., Hobbs, Jean-Paul, Munday, Philip L., and Ostlund-Nilsson, Sara (2004) Coward or braveheart: extreme habitat fidelity through hypoxia tolerance in a coral-dwelling goby. Journal of Experimental Biology, 207 (1). pp. 33-39.

Neil, Kerry M. (2001) Microhabitat segregation of co-existing gastropod species. The Veliger, 44 (3). pp. 294-300.

Newman, Stephen John (1995) Spatial variability in the distribution, abundance, growth, mortality and age structures of tropical snappers (Pisces: Lutjanidae) in the Central Great Barrier Reef, Australia. PhD thesis, James Cook University.

Nelson, Victoria Mary (1994) Demographic processes and spatial heterogeneity in community structure and dynamics of corals on the reef crest. PhD thesis, James Cook University of North Queensland.

O

Olsen, Esben Moland, Heupel, Michelle R., Simpfendorfer, Colin A., and Moland, Even (2012) Harvest selection on Atlantic cod behavioral traits: implications for spatial management. Ecology and Evolution, 2 (7). pp. 1549-1562.

Olin, Jill A., Hussey, Nigel E., Fritts, Mark, Heupel, Michelle R., Simpfendorfer, Colin A., Poulakis, Gregg R., and Fisk, Aaron T. (2011) Maternal meddling in neonatal sharks: implications for interpreting stable isotopes in young animals. Rapid Communications in Mass Spectrometry, 25 (8). pp. 1008-1016.

O'Shea, Owen R,, Kingsford, Michael J., and Seymour, Jamie (2010) Tide-related periodicity of manta rays and sharks to cleaning stations on a coral reef. Marine and Freshwater Research, 61 (1). pp. 65-73.

Olsson, Per, Folke, Carl, and Hughes, Terry P. (2008) Navigating the transition to ecosystem-based management of the Great Barrier Reef, Australia. National Academy of Sciences. Proceedings, 105 (28). pp. 9489-9494.

Orth, Robert J., Carruthers, Tim J.B., Short, Frederick T., Dennison, William C., Duarte, Carlos M., Fourqurean, James W., Heck Jr, Kenneth L., Hughes, A. Randall, Kendrick, Gary A., Kenworthy, W. Judson, Olyarnik, Suzanne, Waycott, Michelle, and Williams, Susan L. (2006) A global crisis for seagrass ecosystems. BioScience, 56 (12). pp. 987-996.

Olivier, Frédérique, Ridd, Michael, and Klumpp, David (2002) The use of transplanted cultured tropical oysters (Saccostrea commercialis) to monitor Cd levels in North Queensland coastal waters (Australia). Marine Pollution Bulletin, 44 (10). pp. 1051-1062.

Omundsen, S.L., Sheaves, M.J., and Molony, B.W. (2000) Temporal population dynamics of the swarming shrimp, Acetes sibogae australis, in a tropical near-shore system. Marine and Freshwater Research, 51 (3). pp. 249-254.

Okaji, Ken (1996) Feeding ecology in the early life stages of the crown-of-thorns starfish, Acanthaster planci (L.). PhD thesis, James Cook University.

P

Przeslawski, Rachel, Alvarez, Belinda, Kool, Johnathan, Bridge, Tom, Caley, M. Julian, and Nichol, Scott (2015) Implications of sponge biodiversity patterns for the management of a marine reserve in Northern Australia. PLoS ONE, 10. pp. 1-20.

Pisapia, Chiara, Sweet, Michael, Sweatman, Hugh, and Pratchett, Morgan Stuart (2015) Geographically conserved rates of background mortality among common reef‐building corals in Lhaviyani Atoll, Maldives, versus northern Great Barrier Reef, Australia. Marine Biology, 162 (8). pp. 1579-1586.

Pratchett, M.S., Blowes, S.A., Coker, D., Kubacki, E., Nowicki, J., and Hoey, A.S. (2015) Indirect benefits of high coral cover for non-corallivorous butterflyfishes. Coral Reefs, 34 (2). pp. 665-672.

Pollock, F. Joseph, Krediet, Cory J., Garren, Melissa, Stocker, Roman, Winn, Karina, Wilson, Bryan, Huete-Stauffer, Carla, Willis, Bette L., and Bourne, David G. (2015) Visualization of coral host-pathogen interactions using a stable GFP-labeled Vibrio coralliilyticus strain. Coral Reefs, 34 (2). pp. 655-662.

Pisapia, Chiara (2015) Spatial, temporal and taxonomic variation in the incidence of partial mortality among reef-building corals. PhD thesis, James Cook University.

Poulos, Davina E., and McCormick, Mark I. (2015) Asymmetries in body condition and order of arrival influence competitive ability and survival in a coral reef fish. Oecologia, 179 (3). pp. 719-728.

Pernice, M., Schliep, M., Szabo, M., Rasheed, M., Bryant, C., York, P., Chartrand, K., Petrou, K., and Ralph, P. (2015) Development of a molecular biology tool kit to monitor dredging-related light stress in the seagrass Zostera muelleri ssp. capricorni in Port Curtis. Report. TropWATER, Cairns, QLD, Australia.

Pratchett, Morgan S., Wilson, Shaun K., and Munday, Philip L. (2015) Effects of climate change on coral reef fishes. In: Mora, Camilo, (ed.) Ecology of Fishes on Coral Reefs. Cambridge University Press, Cambridge, UK, pp. 127-134.

Perry, Chris T., Murphy, Gary N., Graham, Nicholas A.J., Wilson, Shaun K., Januchowski-Hartley, Fraser A., and East, Holly K. (2015) Remote coral reefs can sustain high growth potential and may match future sea-level trends. Scientific Reports, 5. pp. 1-8.

Pratchett, Morgan S., Anderson, Kristen D., Hoogenboom, Mia O., Windman, Elizabeth, Baird, Andrew H., Pandolfi, John M., Edmunds, Peter J., and Lough, Janice M. (2015) Spatial, temporal and taxonomic variation in coral growth: implications for the structure and function of coral reef ecosystems. Oceanography and Marine Biology, 53. pp. 215-295.

Pratchett, Morgan S., Hoey, Andrew S., Cvitanovic, Christopher, Hobbs, Jean-Paul, and Fulton, Christopher J. (2014) Abundance, diversity, and feeding behavior of coral reef butterflyfishes at Lord Howe Island. Ecology and Evolution, 4 (18). pp. 3612-3625.

Pollock, F. Joseph, Lamb, Joleah B., Field, Stuart N., Heron, Scott F., Schaffelke, Britta, Shedrawi, George, Bourne, David G., and Willis, Bette L. (2014) Sediment and turbidity associated with offshore dredging increase coral disease prevalence on nearby reefs. PLoS ONE, 9 (7). pp. 1-9.

Pujolar, J.M., Jacobsen, M.W., Als, T.D., Frydenberg, J., Munch, K., Jónsson, B., Jian, J.B., Cheng, L., Maes, G.E., Bernatchez, L., and Hansen, M.M. (2014) Genome-wide single-generation signatures of local selection in the panmictic European eel. Molecular Ecology, 23 (10). pp. 2514-2528.

Poulos, Davina E., and McCormick, Mark I. (2014) Who wins in the battle for space? The importance of priority, behavioural history and size. Animal Behaviour, 90. pp. 305-314.

Paley, Allison Susanna (2014) Colour polymorphism and its role in stress tolerance in the coral Acropora millepora on the Great Barrier Reef. PhD thesis, James Cook University.

Pratchett, Morgan S., Berumen, Michael L., and Kapoor, B.G. (2014) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA.

Pratchett, Morgan S., Chong-Seng, Karen M., Feary, David A., Hoey, Andrew S., Fulton, Christopher J., Nowicki, Jessica P., Dewan, Adam K., Walker, Stefan P.W., and Berumen, Michael L. (2014) Butterflyfishes as a model group for reef fish ecology: important and emerging research topics. In: Pratchett , Morgan S., Berumen , Michael L., and Kapoor , B.G., (eds.) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA, pp. 310-333.

Pratchett, Morgan S. (2014) Feeding preferences and dietary specialisation among obligate coral-feeding butterflyfishes. In: Pratchett, Morgan S., Berumen, Michael L., and Kapoor, B.G., (eds.) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA, pp. 140-179.

Palacios, M.M., Muñoz, C.G., and Zapata, F.A. (2014) Fish corallivory on a pocilloporid reef and experimental coral responses to predation. Coral Reefs, 33 (3). pp. 625-636.

Pisapia, Chiara, Anderson, Kristen, and Pratchett, Morgan S. (2014) Intraspecific variation in physiological condition of reef-building corals associated with differential levels of chronic disturbance. PLoS ONE, 9 (3). pp. 1-8.

Pratchett, Morgan S., Caballes, Ciemon F., Rivera-Posada, Jairo A., and Sweatman, Hugh P.A. (2014) Limits to understanding and managing outbreaks of crown-of-thorns starfish (Acanthaster spp.). Oceanography and Marine Biology, 52. pp. 133-200.

Pellissier, Loïc, Leprieur, Fabien, Parravicini, Valeriano, Cowman, Peter F., Kulbicki, Michel, Litsios, Glenn, Olsen, Steffen M., Wisz, Mary S., Bellwood, David R., and Mouillot, David (2014) Quaternary coral reef refugia preserved fish diversity. Science, 344 (6187). pp. 1016-1019.

Parsons, D.M., Sim-Smith, C.J., Cryer, M., Francis, M.P., Hartill, B., Jones, E.G., Le Port, A., Lowe, M., McKenzie, J., Morrison, M., Paul, L.J., Radford, C., Ross, P.M., Spong, K.T., Trnski, T., Usmar, N., Walsh, C., and Zeldis, J. (2014) Snapper (Chrysophrys auratus): a review of life history and key vulnerabilities in New Zealand. New Zealand Journal of Marine and Freshwater Research, 48 (2). pp. 256-283.

Paris, Claire B., Atema, Jelle, Irisson, Jean-Olivier, Kingsford, Michael, Gerlach, Gabriele, and Guigand, Cedric M. (2013) Reef odor: a wake up call for navigation in reef fish larvae. PLoS ONE, 8 (8). pp. 1-8.

Ponton, D., Carassou, L., Raillard, S., and Borsa, P. (2013) Geometric morphometrics as a tool for identifying emperor fish (Lethrinidae) larvae and juveniles. Journal of Fish Biology, 83 (1). pp. 14-27.

Poulakis, Gregg R., Stevens, Philip W., Timmers, Amy A., Stafford, Christopher J., and Simpfendorfer, Colin A. (2013) Movements of juvenile endangered smalltooth sawfish, Pristis pectinata, in an estuarine river system: use of non-main-stem river habitats and lagged responses to freshwater inflow-related changes. Environmental Biology of Fishes, 96 (6). pp. 763-778.

Pereira, P.H.C., and Ferreira, B.P. (2013) Effects of life phase and schooling patterns on the foraging behaviour of coral-reef fishes from the genus Haemulon. Journal of Fish Biology, 82 (4). pp. 1226-1238.

Pratchett, M.S., Graham, N.A.J., and Cole, A.J. (2013) Specialist corallivores dominate butterflyfish assemblages in coral-dominated reef habitats. Journal of Fish Biology, 82 (4). pp. 1177-1191.

Pereira, Pedro H.C., Feitosa, João L.L., Medeiros, Diego V., and Ferreira, Beatrice P. (2013) Reef fishes foraging facilitation behavior: increasing the access to a food resource. Acta Ethologica, 16 (1). pp. 53-56.

Pratchett, M.S., Pisapia, C., and Sheppard, C.R.C. (2013) Background mortality rates for recovering populations of Acropora cytherea in the Chagos Archipelago, central Indian Ocean. Marine Environmental Research, 86. pp. 29-34.

Pratchett, Morgan S., McCowan, Dominique, Maynard, Jeffrey A., and Heron, Scott (2013) Changes in bleaching susceptibility among corals subject to ocean warming and recurrent bleaching in Moorea, French Polynesia. PLoS ONE, 8 (7). pp. 1-10.

Pollock, F.J., Katz, S.M., Bourne, D.G., and Willis, B.L. (2013) Cymo melanodactylus crabs slow progression of white syndrome lesions on corals. Coral Reefs, 32 (1). pp. 43-48.

Pratchett, Morgan S., Hoey, Andrew S., Feary, David A., Bauman, Andrew G., Burt, John A., and Riegl, Bernhard M. (2013) Functional composition of Chaetodon butterflyfishes at a peripheral and extreme coral reef location, the Persian Gulf. Marine Pollution Bulletin, 72 (2). pp. 333-341.

Parravicini, V., Kulbicki, M., Bellwood, D.R., Friedlander, A.M., Arias-Gonzalez, J.E., Chabanet, P., Floeter, S.R, Myers, R., Vigliola, L., D'Agata, S., and Mouillot, D. (2013) Global patterns and predictors of tropical reef fish species richness. Ecography, 36 (12). pp. 1254-1262.

Puill-Stephan, E., Willis, B.L., Abrego, D., Raina, J-B., and van Oppen, M.J.H. (2012) Allorecognition maturation in the broadcast-spawning coral Acropora millepora. Coral Reefs, 31 (4). pp. 1019-1028.

Palmer, C. V., Graham, E., and Baird, A. H. (2012) Immunity through early development of coral larvae. Developmental and Comparative Immunology, 38 (2). 395-399.

Palmer, C.V., Bythell, J.C., and Willis, B.L. (2012) Enzyme activity demonstrates multiple pathways of innate immunity in Indo-Pacific anthozoans. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1743). pp. 3879-3887.

Pratchett, Morgan S., Coker, Darren J., Jones, Geoffrey P., and Munday, Philip L. (2012) Specialization in habitat use by coral reef damselfishes and their susceptibility to habitat loss. Ecology and Evolution, 2 (9). pp. 2168-2180.

Pratchett, Morgan S., Bay, Line K., Coker, Darren J., Cole, Andrew J., and Lawton, Rebecca J. (2012) Effects of coral bleaching on coral habitats and associated fishes. In: Lunney, Daniel, and Hutchings, Pat, (eds.) Wildlife and Climate Change: towards robust conservation strategies for Australian fauna. RZS Forum Series . Royal Zoological Society New South Wales, Sydney, NSW, pp. 59-67.

Pisapia, C., Hennige, S.J., Haapkylä, J., Matteucci, R., and Smith, D.J. (2012) Morphological changes in polyp structure of massive coral species in clear and turbid waters. Bulletin of Marine Science, 88 (1). pp. 183-191.

Paley, Allison S., and Bay, Line K. (2012) Bleaching condition varies among Acropora millepora color morphs. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Pisapia, Chiara, Cole, Andrew J., and Pratchett, Morgan S. (2012) Changing feeding preferences of butterflyfishes following coral bleaching. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Pratchett, Morgan, Hoey, Andrew, Coker, Darren, and Gardiner, Naomi (2012) Interdependence between reef fishes and scleractinian corals. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Pereira, Pedro H.C., Feitosa, João L.L., Chaves, Laís C.T., and de Araújo, Maria E. (2012) Reef fish foraging associations: "nuclear-follower" behavior or an ephemeral interaction? In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Palmer, C.V., and Traylor-Knowles, N. (2012) Towards an integrated network of coral immune mechanisms. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1745). pp. 4106-4114.

Pandolfi, John, Connolly, Sean, Marshall, Dustin J., and Cohern, Anne L. (2011) The future of coral reefs - a response. Science, 334 (6062). pp. 1495-1496.

Pollock, F. Joseph, Morris, Pamela J., Willis, Bette L., and Bourne, David G. (2011) The urgent need for robust coral disease diagnostics. PLoS Pathogens, 7 (10). pp. 1-10.

Palmer, C.V., Bythell, J.C., and Willis, B.L. (2011) A comparative study of phenoloxidase activity in diseased and bleached colonies of the coral Acropora millepora. Developmental and Comparative Immunology, 35 (10). pp. 1098-1101.

Pankhurst, Ned, and Munday, Philip (2011) Effects of climate change on fish reproduction and early life history stages. Marine and Freshwater Research, 62 (9). pp. 1015-1026.

Palmer, Caroline V., Traylor-Knowles, Nikki G., Willis, Bette L., and Bythell, John C. (2011) Corals use similar immune cells and wound-healing processes as those of higher organisms. PLoS ONE, 6 (8). pp. 1-11.

Pratchett, Morgan S., Hoey, Andrew S., Wilson, Shaun K., Messmer, Vanessa, and Graham, Nicholas A.J. (2011) Changes in biodiversity and functioning of reef fish assemblages following coral bleaching and coral loss. Diversity, 3 (3). pp. 424-452.

Prado, Patricia, Collier, Catherine J., Romero, Javier, and Alcoverro, Teresa (2011) Distinctive types of leaf tissue damage influence nutrient supply to growing tissues within seagrass shoots. Marine Biology, 158 (7). pp. 1473-1482.

Penin, Lucie, Michonneau, François, Carroll, Andrew, and Adjeroud, Mehdi (2011) Effects of predators and grazers exclusion on early post-settlement coral mortality. Hydrobiologia, 663 (1). pp. 259-264.

Pratchett, M.S., Trapon, M., Berumen, M.L., and Chong-Seng, K. (2011) Recent disturbances augment community shifts in coral assemblages in Moorea, French Polynesia. Coral Reefs, 30 (1). pp. 183-193.

Post, Alexandra L., Beaman, Robin J., O'Brien, Philip E., Eléaume, Marc, and Riddle, Martin J. (2011) Community structure and benthic habitats across the George V Shelf, East Antarctica: trends through space and time. Deep-sea Research. Part II: topical studies in oceanography, 58 (1-2). pp. 105-118.

Pratchett, Morgan S., Bay, Line, Gehrke, Peter C., Koehn, John D., Osborne, Kate, Pressey, Robert L., Sweatman, Hugh P.A., and Wachenfeld, David (2011) Contribution of climate change to degradation and loss of critical fish habitats in Australian marine and freshwater environments. Marine and Freshwater Research, 62 (9). pp. 1062-1081.

Palmer, Caroline V., McGinty, Elizabeth S., Cummings, David J., Smith, Stephanie M., Bartels, Erich, and Mydlarz, Laura D. (2011) Patterns of coral ecological immunology: variation in the responses of Caribbean corals to elevated temperature and a pathogen elicitor. Journal of Experimental Biology, 214 (24). pp. 4240-4249.

Pratchett, Morgan S., Munday, Philip L., Graham, Nicholas A.J., Kronen, Mecki, Pinca, Silvia, Friedman, Kim, Brewer, Tom D., Bell, Johann D., Wilson, Shaun K., Cinner, Joshua E., Kinch, Jeff P., Lawton, Rebecca J., Williams, Ashley J., Chapman, Lindsay, Magron, Franck, and Webb, Arthur (2011) Vulnerability of coastal fisheries in the tropical Pacific to climate change. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, New Caledonia, pp. 493-576.

Pratchett, M.S., Graham, N.A.J., Sheppard, C.R.C., and Mayes, B. (2010) Are infestations of Cymo melanodactylus killing Acropora cytherea in the Chagos archipelago? Coral Reefs, 29 (4). p. 941.

Pollnac, Richard, Christie, Patrick, Cinner, Joshua E., Dalton, Tracey, Daw, Tim M., Forrester, Graham E., Graham, Nicholas A.J., and McClanahan, Timothy R. (2010) Marine reserves as linked social–ecological systems. Proceedings of the National Academy of Sciences, 107 (43). pp. 18262-18265.

Price, Samantha A., Wainwright, Peter C., Bellwood, David R., Kazancioglu, Erem, Collar, David C., and Near, Thomas J. (2010) Functional innovations and morphological diversification in parrotfish. Evolution, 64 (10). pp. 3057-3068.

Pratchett, M.S. (2010) Changes in coral assemblages during an outbreak of Acanthaster planci at Lizard Island, northern Great Barrier Reef (1995-1999). Coral Reefs, 29 (3). pp. 717-725.

Puill-Stephan, Eneour (2010) Chimerism and allorecognition in the broadcast spawning coral Acropora millepora on the Great Barrier Reef. PhD thesis, James Cook University.

Pollock, F. Joseph, Morris, Pamela J., Willis, Bette L., and Bourne, David G. (2010) Detection and quantification of the coral pathogen vibrio coralliilyticus by real-time PCR with TaqMan fluorescent probes. Applied and Environmental Microbiology, 76 (15). pp. 5282-5286.

Penin, Lucie, Michonneau, François, Baird, Andrew H., Connolly, Sean R., Pratchett, Morgan S., Kayal, Mohsen, and Adjeroud, Mehdi (2010) Early post-settlement mortality and the structure of coral assemblages. Marine Ecology Progress Series, 408. pp. 55-64.

Palmer, Caroline V., Bythell, John C., and Willis, Bette L. (2010) Levels of immunity parameters underpin bleaching and disease susceptibility of reef corals. FASEB Journal, 24 (6). pp. 1935-1946.

Polidoro, Beth A., Carpenter, Kent E., Collins, Lorna, Duke, Norman C., Ellison, Aaron M., Ellison, Joanna C., Farnsworth, Elizabeth J., Fernando, Edwino S., Kathiresan, Kandasamy, Koedam, Nico E., Livingstone, Suzanne, Miyagi, Toyohiko, Moore, Gregg E., Nam, Vien Ngoc, Ong, Jin Eong, Primavera, Jurgenne H., Salmo, Severino G., Sanciangco, Jonnell C., Sukardjo, Sukristijono, Wang, Yamin, and Hong Yong, Jean Wan (2010) The loss of species: mangrove extinction risk and geographic areas of global concern. PLoS ONE, 5 (4). pp. 1-10.

Pollock, F. Joseph, Wilson, Bryan, Johnson, Wesley R., Morris, Pamela J., Willis, Bette L., and Bourne, David G. (2010) Phylogeny of the coral pathogen Vibrio coralliilyticus. Environmental Microbiology Reports, 2 (1). pp. 172-178.

Pratchett, M.S., Schenk, T.J., Baine, M., Syms, C., and Baird, A.H. (2009) Selective coral mortality associated with outbreaks of Acanthaster planci L. in Bootless Bay, Papua New Guinea. Marine Environmental Research, 67 (4-5). pp. 230-236.

Planes, Serge, Jones, Geoffrey P., and Thorrold, Simon R. (2009) Larval dispersal connects fish populations in a network of marine protected areas. Proceedings of the National Academy of Sciences, 106 (14). pp. 5693-5697.

Palmer, Caroline V., Roth, Melissa S., and Gates, Ruth D. (2009) Red fluorescent protein responsible for pigmentation in Trematode-infected Porites compressa tissues. Biological Bulletin, 216 (1). pp. 68-74.

Paris, C.B., Aldana-Aranda, D., Perez-Perez, M., and Kool, J. (2009) Connectivity of Queen conch, Strombus gigas, populations from Mexico. In: Proceedings of the 11th International Coral Reef Symposium, pp. 439-443. From: 11th International Coral Reef Symposium, 7-11 July 2008, Fort Lauderdale, Florida, USA.

Pratchett, M.S., Wilson, S.K., Graham, N.A.J., Munday, P.L., Jones, G.P., and Polunin, N.V.C. (2009) Coral bleaching and consequences for motile reef organisms: past, present and uncertain future effects. In: van Oppen, M.J.H., and Lough, J.M., (eds.) Coral Bleaching: patterns, processes, causes and consequences. Ecological Studies, 205 . Springer, Germany, pp. 139-158.

Palmer, Caroline V., Modi, Chintan K., and Mydlarz, Laura D. (2009) Coral fluorescent proteins as antioxidants. PLoS ONE, 4 (10). p. 7298.

Peplow, L.M., Kingsford, M.J., Seymour, J.E., and Van Oppen, M.J.H. (2009) Eight microsatellite loci for the Irukandji syndrome-causing carybdeid jellyfish, Carukia barnesi (Cubozoa, Cnidaria). Molecular Ecology Resources, 9. pp. 670-672.

Page, Cathie A., Baker, David M., Harvell, C Drew, Golbuu, Yimnang, Raymundo, Laurie, Neale, Stephen J., Rosell, Kathryn B., Rypien, Krystal L., Andras, Jason P., and Willis, Bette L. (2009) Influence of marine reserves on coral disease prevalence. Diseases of Aquatic Organisms, 87 (1-2). pp. 135-150.

Pratchett, M.S., Baird, A.H., McCowan, D.M., Coker, D.J., Cole, A.J., and Wilson, S.K. (2009) Protracted declines in coral cover and fish abundance following climate-induced coral bleaching on the Great Barrier Reef. In: Proceedings of the 11th Coral Reef Symposium, 1042- 1046. From: 11th International Coral Reef Symposium, 7 July - 11 July 2008, Fort Lauderdale, Florida, USA.

Palmer, Caroline V., Mydlarz, Laura D., and Willis, Bette L. (2008) Evidence of an inflammatory-like response in non-normally pigmented tissues of two scleractinian corals. Proceedings of the Royal Society of London Series B, Biological Sciences, 275 (1652). pp. 2687-2693.

Pratchett, M.S., and Berumen, M.L. (2008) Interspecific variation in distributions and diets of coral reef butterflyfishes (Teleostei: Chaetodontidae). Journal of Fish Biology, 73 (7). pp. 1730-1747.

Phelan, M.J., Gribble, N.A., and Garrett, R.N. (2008) Fishery biology and management of Protonibea diacanthus (Sciaenidae) aggregations in far Northern Cape York Peninsula waters. Continental Shelf Research, 28 (16). pp. 2143-2151.

Preite, Carrie (2008) Phytoplankton dynamics of riverine water holes in the dry tropics of north Queensland, Australia. PhD thesis, James Cook University.

Page, C.A., and Willis, B.L. (2008) Epidemiology of skeletal eroding band on the Great Barrier Reef and the role of injury in the initiation of this widespread coral disease. Coral Reefs, 27 (2). pp. 257-272.

Penfold, Rose, Grutter, Alexandra S., Kuris, Armand M., McCormick, Mark I., and Jones, Cornor M. (2008) Interactions between juvenile marine fish and gnathiid isopods: predation versus micropredation. Marine Ecology Progress Series, 357. pp. 111-119.

Peck, Darren R., Bancroft, Wesley J. , and Congdon, Bradley C. (2008) Morphological and molecular variation within an ocean basin in wedge-tailed shearwaters (Puffinus pacificus). Marine Biology, 153 (6). pp. 1113-1125.

Purkis, S.J., Graham, N.A.J., and Riegl, B.M. (2008) Predictability of reef fish diversity and abundance using remote sensing data in Diego Garcia (Chagos Archipelago). Coral Reefs, 27 (1). pp. 167-178.

Prado, Patricia, Collier, Catherine J., and Lavery, Paul S. (2008) 13C and 15N translocation within and among shoots in two Posidonia species from Western Australia. Marine Ecology Progress Series, 361. pp. 69-82.

Pratchett, Morgan S., Munday, Philip L., Wilson, Shaun K., Graham, Nicholas A.J., Cinner, Joshua E., Bellwood, David R., Jones, Geoffrey P., Polunin, Nicholas V.C., and McClanahan, Tim R. (2008) Effects of climate-induced coral bleaching on coral-reef fishes - ecological and economic consequences. Oceanography and Marine Biology: an annual review, 46. pp. 251-296.

Pratchett, M.S., Berumen, M.L., Marnane, M.J., Eagle, J.V., and Pratchett, D.J. (2008) Habitat associations of juvenile versus adult butterflyfishes. Coral Reefs, 27. pp. 541-551.

Pitt, Kylie A., Kingsford, Michael, Rissik, David, and Koop, Klaus (2007) Jellyfish modify the response of planktonic assemblages to nutrient pulses. Marine Ecology Progress Series, 351. pp. 1-13.

Patterson, Heather M., and Swearer, Stephen E. (2007) Long-distance dispersal and local retention of larvae as mechanisms of recruitment in an island population of a coral reef fish. Austral Ecology, 32 (2). pp. 122-130.

Penin, Lucie, Adjeroud, Mehdi, Pratchett, Morgan S., and Hughes, Terence P. (2007) Spatial distribution of juvenile and adult corals around Moorea (French Polynesia): implications for population regulation. Bulletin of Marine Science, 80 (2). pp. 379-390.

Pratchett, Morgan S. (2007) Feeding preferences of Acanthaster planci (Echinodermata: Asteroidea) under controlled conditions of food availability. Pacific Science, 61 (1). pp. 113-120.

Pratchett, Morgan S. (2007) Dietary selection by coral-feeding butterflyfishes (Chaetodontidae) on the Great Barrier Reef, Australia. Raffles Bulletin of Zoology: Supplement Series, 14. pp. 171-176.

Pujolar, J.M., Maes, G.E., and Volckaert, F.A.M. (2007) Genetic and morphometric heterogeneity among recruits of the European eel, Anguilla anguilla. Bulletin of Marine Science, 81 (2). pp. 297-308.

Pratchett, M.S., Wilson, S.K., and Baird, A.H. (2006) Declines in the abundance of Chaetodon butterflyfishes following extensive coral depletion. Journal of Fish Biology, 69 (5). pp. 1269-1280.

Paul, Nicholas A., de Nys, Rocky, and Steinberg, Peter D. (2006) Seaweed-herbivore interactions at a small scale: direct tests of feeding deterrence by filamentous algae. Marine Ecology Progress Series, 323. pp. 1-9.

Peverall, S.C., McPherson, G.R., Garret, R.N., and Gribble, N.A. (2006) New records of the River Shake Glyphis (Carcharhinidae) reported from Cape York Peninsula, northern Australia. Zootaxa, 1233. pp. 53-68.

Peck, Darren R., and Congdon, Bradley C. (2006) Sex-specific chick provisioning and diving behaviour in the wedge-tailed shearwater Puffinus pacificus. Journal of Avian Biology, 37 (3). pp. 245-251.

Page, Cathie, and Willis, Bette (2006) Distribution, host range and large-scale spatial variability in black band disease prevalence on the Great Barrier Reef, Australia. Diseases of Aquatic Organisms, 69 (1). pp. 41-51.

Pratchett, Morgan S., Pradjakusuma, Oki. A., and Jones, Geoffrey P. (2006) Is there a reproductive basis to solitary living versus pair-formation in coral reef fishes? Coral Reefs, 25 (1). pp. 85-92.

Paul, N.A., de Nys, Rocky, and Steinberg, P.D. (2006) Chemical defence against bacteria in the red alga Asparagopsis armata: linking structure with function. Marine Ecology Progress Series, 306. pp. 87-101.

Plathong, S., Chanmethakul, T., Suwonno, V., Buaphet, P., Baird, A.H., Chen, C.A., and Soontornpitakkool, S. (2006) Daytime gamete release from the reef-building coral, Pavona sp., in the Gulf of Thailand. Coral Reefs, 25 (1). p. 72.

Pollock, Kenneth H., Marsh, Helene D., Lawler, Ivan R., and Alldredge, Matthew W. (2006) Estimating animal abundance in heterogeneous environments: an application to aerial surveys for dugongs. Journal of Wildlife Management, 70 (1). pp. 255-262.

Pecl, Gretta T., and Moltschaniwskyj, Natalie A. (2006) Life history of a short-lived squid (Sepioteuthis australis): resource allocation as a function of size, growth, maturation, and hatching season. ICES Journal of Marine Science, 63 (6). pp. 995-1004.

Peck, Darren R., Erwin, Carol A., and Congdon, Bradley C. (2006) Variation in egg-size in the Wedge-tailed Shearwater (Puffinus pacificus). Emu: austral ornithology, 106 (3). pp. 227-231.

Pratchett, Morgan S. (2005) Dietary overlap among coral-feeding butterflyfishes (Chaetodontidae) at Lizard Island, northern Great Barrier Reef. Marine Biology, 148. pp. 373-382.

Pratchett, Morgan S. (2005) Dynamics of an outbreak population of Acanthaster planci at Lizard Island, northern Great Barrier Reef (1995–1999). Coral Reefs, 24 (3). pp. 453-462.

Patterson, Heather M., and Kingsford, Michael J. (2005) Elemental signatures of Acanthochromis polyacanthus otoliths from the Great Barrier Reef have significant temporal, spatial, and between-brood variation. Coral Reefs, 24 (3). pp. 360-369.

Peck, Darren R., and Congdon, Bradley C. (2005) Colony-specific foraging behaviour and co-ordinated divergence of chick development in the wedge-tailed shearwater Puffinus pacificus. Marine Ecology Progress Series, 299. pp. 289-296.

Parra, Guido J. (2005) Behavioural ecology of Irrawaddy, Orcaella brevirostris (Owen in Gray, 1866), and Indo-Pacific humpback dolphins, Sousa chinensis (Osbeck, 1765), in northeast Queensland, Australia : a comparative study. PhD thesis, James Cook University.

Phelan, Michael John (2005) Indigenous subsistence fishing at Injinoo Aboriginal Community, northern Cape York Peninsula. Masters (Research) thesis, James Cook University.

Peck, Darren R., Smithers, Brian V., Krockenberger, Andrew K., and Congdon, Bradley C. (2004) Sea surface temperature constrains wedge-tailed shearwater foraging success within breeding seasons. Marine Ecology Progress Series, 281. pp. 259-266.

Pratchett, M.S., Wilson, S.K., Berumen, M.L., and McCormick, M.I. (2004) Sublethal effects of coral bleaching on an obligate coral feeding butterflyfish. Coral Reefs, 23 (3). pp. 352-356.

Pitt, Kylie A, Koop, Klaus, Rissik, David, and Kingsford, M.J. (2004) The ecology of scyphozoan jellyfish in Lake Illawarra. Wetlands (Australia), 21 (2). pp. 115-123.

Pecl, Gretta (2004) The in situ relationships between season of hatching, growth and condition in the southern calamary, Sepioteuthis australis. Marine and Freshwater Research, 55 (4). pp. 429-438.

Patterson, Heather M., Kingsford, Michael J., and McCulloch, Malcolm T. (2004) The influence of oceanic and lagoonal plume waters on otolith chemistry. Canadian Journal of Fisheries and Aquatic Sciences, 61 (6). pp. 898-904.

Patterson, Heather M., Kingsford, Michael J., and McCulloch, Malcolm T. (2004) Elemental signatures of Pomacentrus coelestis otoliths at multiple spatial scales on the Great Barrier Reef, Australia. Marine Ecology Progress Series, 270. pp. 229-239.

Pandolfi, John M., Bradbury, Roger H., Sala, Enric, Hughes, Terrence P., Bjorndal, Karen A., Cooke, Richard G., McArdle, Deborah, McClenachan, Loren, Newman, Marah J.H., Paredes, Gustavo, Warner, Robert R., and Jackson, Jeremy B.C. (2003) Response to Causes of coral reef degradation [Aronson et al. (2003) Causes of coral reef degradation]. Science, 302 (5650). pp. 1502-1503.

Pitt, Kylie A., and Kingsford, Michael J. (2003) Recruitment and growth of medusae of the schyphozoan jellyfish, Catostylus mosaicus. Marine and Freshwater Research, 54 (2). pp. 117-125.

Platten, J. R., Tibbetts, I. R., and Sheaves, M. J. (2002) The influence of increased line-fishing mortality on the sex ratio and age of sex reversal of the venus tusk fish. Journal of Fish Biology, 60 (2). pp. 301-318.

Pratchett, M.S., Baird, A.H., and Marquis, C.P. (2002) Comparative palatability among eggs of mass-spawning corals. In: Proceedings of the Ninth International Coral Reef Symposium (1), pp. 391-394. From: World Coral Reefs in the New Millenium: bridging research and management for sustainable development, 23-27 October 2000, Bali, Indonesia.

Pratchett, Morgan S. (2001) Dynamics of outbreak populations of crown-of-thorns starfish (Acanthaster planci L.), and their effects on coral reef ecosystems. PhD thesis, James Cook University.

Pratchett, M.S., Gust, N., Goby, G., and Klanten, S.O. (2001) Consumption of coral propagules represents a significant trophic link between corals and reef fish. Coral Reefs, 20 (1). pp. 13-17.

Pratchett, Morgan S. (2001) Influence of coral symbionts on feeding preferences of crown-of-thorns starfish Acanthaster planci in the western Pacific. Marine Ecology-Progress Series, 214. pp. 111-119.

Parra Vergara, Guido J., and Corkeron, Peter J. (2001) Feasibility of using photo-identification techniques to study the Irrawaddy dolphin, Orcaella brevirostris (Owen in Gray 1866). Aquatic Mammals, 27 (1). pp. 45-49.

Pecl, G. (2001) Flexible reproductive strategies in tropical and temperate Sepioteuthis squids. Marine Biology, 138 (1). pp. 93-101.

Purcell, S.W., and Bellwood, D.R. (2001) Spatial patterns of epilithic algal and detrital resources on a windward coral reef. Coral Reefs, 20 (2). pp. 117-125.

Pratchett, M., Vytopil, E., and Parks, P. (2000) Coral crabs influence the feeding patterns of crown-of-thorns starfish. Coral Reefs, 19 (1). p. 36.

Purcell, Steven W. (2000) Association of epilithic algae with sediment distribution on a windward reef in the Northern Great Barrier Reef, Australia. Bulletin of Marine Science, 66 (1). pp. 199-214.

Pratchett, Morgan (1999) An infectious disease in crown-of-thorns starfish on the Great Barrier Reef. Coral Reefs, 18. p. 272.

Pitt, Joanna Maria (1997) The feeding ecology of rabbitfish (Siganidae) at Green Island reef: ontogenetic and interspecific differences in diet, morphology and habitat utilisation. PhD thesis, James Cook University of North Queensland.

Purcell, Steven William (1997) The role of sediments in epilithic algal communities on coral reefs. PhD thesis, James Cook University.

Perez, Orpha Salatandre (1985) Studies on the biology of the Indo-Pacific sandy shore crab, Matuta lunaris Forskål (Brachyura: Calappidae). Masters (Research) thesis, James Cook University.

R

Rueger, T., Gardiner, N.M., and Jones, G.P. (2016) Homing is not for everyone: displaced cardinalfish find a new place to live. Journal of Fish Biology. pp. 1-7. (In Press)

Roberts, May B., Jones, Geoffrey P., McCormick, Mark I., Munday, Philip L., Neale, Stephen, Thorrold, Simon, Robitzch, Vanessa S.N., and Berumen, Michael L. (2016) Homogeneity of coral reef communities across 8 degrees of latitude in the Saudi Arabian Red Sea. Marine Pollution Bulletin, 105 (2). pp. 558-565.

Rossi, Tullio, Nagelkerken, Ivan, Simpson, Stephen D., Pistevos, Jennifer C.A., Watson, Sue-Ann, Merillet, Laurene, Fraser, Peter, Munday, Philip L., and Connell, Sean D. (2015) Ocean acidification boosts larval fish development but reduces the window of opportunity for successful settlement. Proceedings of the Royal Society of London Series B, Biological Sciences, 282 (1821). pp. 1-9.

Ricart, Aurora M., York, Paul H., Rasheed, Michael A., Pérez, Marta, Romero, Javier, Bryant, Catherine V., and Macreadie, Peter I. (2015) Variability of sedimentary organic carbon in patchy seagrass landscapes. Marine Pollution Bulletin, 100 (1). pp. 476-482.

Roche, R.C., Pratchett, M.S., Carr, P., Turner, J.R., Wagner, D., Head, C., and Sheppard, C.R.C (2015) Localized outbreaks of Acanthaster planci at an isolated and unpopulated reef atoll in the Chagos Archipelago. Marine Biology, 162 (8). pp. 1695-1704.

Rizzari, Justin R. (2015) Trophic impact of large predators on coral reefs and management implications. PhD thesis, James Cook University.

Rizzari, Justin R., Bergseth, Brock J., and Frisch, Ashley J. (2015) Impact of conservation areas on trophic interactions between apex predators and herbivores on coral reefs. Conservation Biology, 29 (2). pp. 418-429.

Roberts, T.E., Moloney, J.M., Sweatman, H.P.A., and Bridge, T.C.L. (2015) Benthic community composition on submerged reefs in the central Great Barrier Reef. Coral Reefs, 34 (2). pp. 569-580.

Rocker, Melissa M., Noonan, Sam, Humphrey, Craig, Moya, Aurelie, Willis, Bette L., and Bay, Line K. (2015) Expression of calcification and metabolism-related genes in response to elevated pCO(2) and temperature in the reef-building coral Acropora millepora. Marine Genomics, 24 (Part 3). pp. 313-318.

Ramasamy, Ryan A., Allan, Bridie J.M., and McCormick, Mark I. (2015) Plasticity of escape responses: prior predator experience enhances escape performance in a coral reef fish. PLoS ONE, 10 (8). pp. 1-9.

Rueger, Theresa, Harrison, Hugo B., Jones, Geoffrey P., Mansour, Hicham, and Berumen, Michael L. (2015) Resolving genealogical relationships in the Pyjama cardinalfish, Sphaeramia nematoptera (Apogonidae) with 23 novel microsatellite markers. Conservation Genetics Resources, 7 (3). pp. 623-626.

Russ, Garry R., Questel, Sarah-Lee A., Rizzari, Justin R., and Alcala, Angel C. (2015) The parrotfish-coral relationship: refuting the ubiquity of a prevailing paradigm. Marine Biology, 162 (10). pp. 2029-2045.

Rasheed, Michael A., McKenna, Skye A., Carter, Alexandra B., and Coles, Robert G. (2014) Contrasting recovery of shallow and deep water seagrass communities following climate associated losses in tropical north Queensland, Australia. Marine Pollution Bulletin, 83. pp. 491-499.

Rizzari, J.R., and Lönnstedt, O.M. (2014) Cooperative hunting and gregarious behaviour in the zebra lionfish, Dendrochirus zebra. Marine Biodiversity, 44 (4). pp. 467-468.

Rizzari, Justin R., Frisch, Ashley J., and Magnenat, Katalin A. (2014) Diversity, abundance, and distribution of reef sharks on outer-shelf reefs of the Great Barrier Reef, Australia. Marine Biology, 161 (12). pp. 2847-2855.

Rizzari, Justin R., Frisch, Ashley J., and Connolly, Sean R. (2014) How robust are estimates of coral reef shark depletion? Biological Conservation, 176. pp. 39-47.

Rizzari, Justin R., Frisch, Ashley J., Hoey, Andrew S., and McCormick, Mark I. (2014) Not worth the risk: apex predators suppress herbivory on coral reefs. Oikos, 123 (7). pp. 829-836.

Roche, D.G., Taylor, M.K., Binning, S.A., Johansen, J.L., Domenici, P., and Steffensen, J.F. (2014) Unsteady flow affects swimming energetics in a labriform fish (Cymatogaster aggregata). Journal of Experimental Biology, 217. pp. 414-422.

Raina, Jean-Baptiste, Tapiolas, Dianne M., Foret, Sylvain, Lutz, Adrian, Abrego, David, Ceh, Janja, Seneca, Francois O., Clode, Peta L., Bourne, David G., Willis, Bette L., and Motti, Cherie A. (2013) DMSP biosynthesis by an animal and its role in coral thermal stress response. Nature, 502 (7473). pp. 677-691.

Roy, Alexandra-Sophie, Frisch, Ashley J., Syms, Craig, Thorrold, Simon R., and Jones, Geoffrey P. (2013) Retention of a transgenerational marker (137Barium) in tissues of adult female anemonefish and assessment of physiological stress. Environmental Biology of Fishes, 96 (4). pp. 459-466.

Rasher, Douglas B., Hoey, Andrew S., and Hay, Mark E. (2013) Consumer diversity interacts with prey defenses to drive ecosystem function. Ecology, 94 (6). pp. 1347-1358.

Rummer, Jodie L., Stecyk, Jonathan A.W., Couturier, Christine, Watson, Sue-Ann, Nilsson, Göran E., and Munday, Philip L. (2013) Elevated CO₂ enhances aerobic scope of a coral reef fish. Conservation Physiology, 1 (1). pp. 1-7.

Renema, Willem, Beaman, Robin J., and Webster, Jody M. (2013) Mixing of relict and modern tests of larger benthic foraminifera on the Great Barrier Reef shelf margin. Marine Micropaleontology, 101. pp. 68-75.

Rivera-Posada, Jairo, Owens, Leigh, Caballes, Ciemon F., and Pratchett, Morgan (2012) The role of protein extracts in the induction of disease in Acanthaster planci. Journal of Experimental Marine Biology and Ecology, 429. pp. 1-6.

Rasheed, Michael A., McCormack, Cath, Chartrand, Katie, Ralph, Peter, Thomas, Ross, and Coles, Robert (2012) Measuring the dynamics and thresholds of tropical deepwater seagrasses. In: Proceedings of the 10th International Seagrass Biology Workshop, p. 26. From: 10th International Seagrass Biology Workshop, 25-30 November 2012, Armação dos Búzios, Brazil.

Rudi, Edi, Campbell, Stuart J., Hoey, Andrew S., Fadli, Nur, Linkie, Matthew, and Baird, Andrew H. (2012) The Coral Triangle Initiative: What are we missing? A case study from Aceh. Oryx, 46 (4). 482-485.

Rivera Posada, Jairo A. (2012) Pathogenesis of crown-of-thorns starfish (Acanthaster planci L). PhD thesis, James Cook University.

Rawlinson, Kate A., and Stella, Jessica (2012) Discovery of the corallivorous polyclad flatworm, Amakusaplana acroporae, on the Great Barrier Reef, Australia - the first report from the wild. PLoS One, 7 (8). pp. 1-6.

Ruiz-Morenol, Diego, Willis, Bette L., Page, A. Cathie, Weil, Ernesto, Cróquer, Aldo, Vargas-Angel, Bernardo, Jordan-Garza, Adán Guillermo, Jordán-Dahlgren, Eric, Raymundo, Laurie, and Harvell, C. Drew (2012) Global coral disease prevalence associated with sea temperature anomalies and local factors. Diseases of Aquatic Organisms, 100 (3). pp. 249-261.

Rivera-Posada, J.A., Pratchett, M., Cano-Gómez, A., Arango-Gómez, J.D., and Owens, L. (2011) Injection of Acanthaster planci with thiosulfate-citrate-bile-sucrose agar (TCBS). I. Disease induction. Diseases of Aquatic Organisms, 97 (2). pp. 85-94.

Rivera-Posada, J.A., Pratchett, M., Cano-Gómez, A., Arango-Gómez, J.D., and Owens, L. (2011) Refined identification of Vibrio bacterial flora from Acanthasther planci based on biochemical profiling and analysis of housekeeping genes. Diseases of Aquatic Organisms, 96 (2). pp. 113-123.

Rasheed, Michael A., and Unsworth, Richard K.F. (2011) Long-term climate-associated dynamics of a tropical seagrass meadow: implications for the future. Marine Ecology Progress Series, 422. pp. 93-103.

Russ, Garry R., and Alcala, Angel C. (2011) Enhanced biodiversity beyond marine reserve boundaries: the cup spillith over. Ecological Applications, 21 (1). pp. 241-250.

Rivera Posada, J.A., Pratchett, M., and Owens, L. (2011) Injection of Acanthaster planci with thiosulfate-citrate-bile-sucrose agar (TCBS). II. Histopathological changes. Diseases of Aquatic Organisms, 97 (2). pp. 95-102.

Riemann, Lasse, Alfredsson, Hanna, Hansen, Michael M., Als, Thomas D., Nielsen, Torkel G., Munk, Peter, Aarestrup, Kim, Maes, Gregory E., Sparholt, Henrik, Petersen, Michael I., Bachler, Mirjam, and Castonguay, Martin (2010) Qualitative assessment of the diet of European eel larvae in the Sargasso Sea resolved by DNA barcoding. Biology Letters, 6 (6). pp. 819-822.

Russ, Garry R., and Alcala, Angel C. (2010) Decadal-scale rebuilding of predator biomass in Philippine marine reserves. Oecologia, 163 (4). pp. 1103-1106.

Raina, Jean-Baptiste, Dinsdale, Elizabeth A., Willis, Bette L., and Bourne, David G. (2010) Do the organic sulfur compounds DMSP and DMS drive coral microbial associations? Trends in Microbiology, 18 (3). pp. 101-108.

Rosser, N. L. , and Baird, A.H. (2010) Multi-specific coral spawning in spring and autumn in far north-western Australia. In: Proceedings of the 11th International Coral Reef Symposium, pp. 366-370. From: 11th International Coral Reef Symposium, 7 - 11 July 2008, Fort Lauderdale, FL, USA.

Raina, Jean-Baptiste, Tapiolas, Dianne, Willis, Bette L., and Bourne, David G. (2009) Coral-associated bacteria and their role in the biogeochemical cycling of sulfur. Applied and Environmental Microbiology, 75 (11). pp. 3492-3501.

Raeymaekers, Joost A.M., Maes, Gregory E., Geldof, Sarah, Hontis, Ingrid, Nackaerts, Kris, and Volckaert, Filip A.M. (2008) Modeling genetic connectivity in sticklebacks as a guideline for river restoration. Evolutionary Applications, 1 (3). pp. 475-488.

Russ, Garry R., Cheal, Alistair J., Dolman, Andrew M., Emslie, Michael J., Evans, Richard D., Miller, Ian, Sweatman, Hugh, and Williamson, David H. (2008) Rapid increase in fish numbers follows creation of world's largest marine reserve network. Current Biology, 18 (12). pp. 514-515.

Roy, Alexandra-Sophie (2008) Trans-generational marking of clownfish larvae via maternal transmission of stable isotopes. Masters (Research) thesis, James Cook University.

Rasheed, Michael A., Dew, Kara R., McKenzie, Len J., Coles, Robert G., Kerville, Simon P., and Campbell, Stuart J. (2008) Productivity, carbon assimilation and intra-annual change in tropical reef platform seagrass communities of the Torres Strait, north-eastern Australia. Continental Shelf Research, 28 (16). pp. 2292-2303.

Richards, Zoe T., van Oppen, Madeleine J.H., Wallace, Carden C., Willis, Bette L., and Miller, David J. (2008) Some rare Indo-Pacific coral species are probable hybrids. Public Library of Science ONE , 3 (9). pp. 1-8.

Raymundo, L., Work, T., Bruckner, A., and Willis, B. (2008) A decision tree for describing coral lesions in the field. In: Raymundo, Laurie J., Couch, Courtney S., and Harvell, C. Drew, (eds.) Coral Disease Handbook: guidelines for assessment monitoring and management. Coral Reef Targeted Research and Capacity Building for Management Program, St Lucia, QLD, Australia, pp. 17-32.

Ryen, Christopher (2007) Sex-specific growth dynamics in protogynous hermaphrodites. Masters (Research) thesis, James Cook University.

Robbins, William D., Hisano, Mizue, Connolly, Sean R., and Choat, J. Howard (2006) Ongoing collapse of coral-reef shark populations. Current Biology, 16 (23). pp. 2314-2319.

Roberts, David A., Poore, Alistair G.B., and Johnston, Emma L. (2006) Ecological consequences of copper contamination in macroalgae: effects on epifauna and associated herbivores. Environmental Toxicology and Chemistry, 25 (9). pp. 2470-2479.

Rummer, J.L., Regan, M., and Brauner, C.J. (2006) Characterization of the hemoglobin and red blood cell system in the copper rockfish, Sebastes caurinus. Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 143 (Suppl 4). S74-S74.

Rummer, J.L., Machala, A.M., Grant, A., Balfrey, S.K., Higgs, D.A., Devlin, R., Schulte, P.M., and Brauner, C.J. (2006) A swimmer's diet: substituting dietary lipids and the resulting effects on swimming performance in Chinook salmon (Oncorhynchus tshawytscha). Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 143 (Suppl 4). S72-S72.

Roberts, David, and Poore, Alistair (2006) Habitat configuration affects colonisation of epifauna in a marine algal bed. Biological Conservation, 127 (1). pp. 18-26.

Russ, Garry R., Stockwell, Brian, and Alcala, Angel C. (2005) Inferring versus measuring rates of recovery in no-take marine reserves. Marine Ecology Progress Series, 292. pp. 1-12.

Rotmann, Sandra (2004) Tissue thickness as a tool to monitor the stress response of massive porites corals to turbidity impact on Lihir Island, Papua New Guinea. PhD thesis, James Cook University.

Rodriguez-Lanetty, Mauricio, Krupp, Dave A., and Weis, Virginia M. (2004) Distinct ITS types of Symbiodinium in Clade C correlate with cnidarian/dinoflagellate specificity during onset of symbiosis. Marine Ecology Progress Series, 275. pp. 97-102.

Russ, Garry R., Alcala, Angel C., Maypa, Aileen P., Calumpong, Hilconida P., and White, Alan T. (2004) Marine reserve benefits local fisheries. Ecological Applications, 14 (2). pp. 597-606.

Russ, Garry R., and Alcala, Angel C. (2004) Marine reserves: long-term protection is required for full recovery of predatory fish populations. Oecologia, 138 (4). pp. 622-627.

Rasheed, Michael (2004) Recovery and succession in a multi-species tropical seagrass meadow following experimental disturbance: the role of sexual and asexual reproduction. Journal of Experimental Marine Biology and Ecology, 310 (1). pp. 13-45.

Rodriguez-Lanetty, Mauricio, Marquez, Luis Miguel, and Losada, Freddy (2003) Changes in gorgonian morphology along a depth gradient at Isla Alcatraz, San Sebastian National Park, Venezuela. Bulletin of Marine Science, 72 (3). pp. 1019-1023.

Rogers, Cary N., de Nys, Rocky, and Steinberg, Peter D. (2003) Ecology of the sea hare Aplysia parvula (Opisthobranchia) in New South Wales, Australia. Molluscan Research, 23 (3). pp. 185-198.

Round, Frank E., and Alexander, Christopher G. (2002) Licmosoma: a new diatom genus growing on barnacle cirri. Diatom Research, 17 (2). pp. 319-326.

Rasheed, Michael A. (1999) Recovery of experimentally created gaps within a tropical Zostera capricorni (Aschers.) seagrass meadow, Queensland Australia. Journal of Experimental Marine Biology and Ecology, 235 (2). pp. 183-200.

Rasmussen, Cecily Ellen (1994) Anthropogenic disturbance of environmental signals retained in massive corals. PhD thesis, James Cook University.

Reid, David Gordon (1984) The systematics and ecology of the mangrove-dwelling Littoraria species (Gastropoda: Littorinidae) in the Indo-Pacific. PhD thesis, James Cook University.

S

Serrano, Oscar, Lavery, Paul S., Duarte, Carlos M., Kendrick, Gary A., Calafat, Antoni, York, Paul H., Steven, Andy, and Macreadie, Peter I. (2016) Can mud (silt and clay) concentration be used to predict soil organic carbon content within seagrass ecosystems? Biogeosciences, 13. pp. 4915-4926.

Smith, Timothy M., York, Paul H., Macreadie, Peter I., Keough, Michael J., Ross, D. Jeff, and Sherman, Craig D.H. (2016) Spatial variation in reproductive effort of a southern Australian seagrass. Marine Environmental Research, 120. pp. 214-224.

Sheaves, Marcus (2016) Simple processes drive unpredictable differences in estuarine fish assemblages: baselines for understanding site-specific ecological and anthropogenic impacts. Estuarine, Coastal and Shelf Science , 170. pp. 61-69.

Smith, Timothy M., York, Paul H., Macreadie, Peter I., Keough, Michael J., Ross, D. Jeff, and Sherman, Craig D.H. (2016) Recovery pathways from small scale disturbance in a temperate Australian seagrass. Marine Ecology Progress Series, 542. pp. 97-108.

Simpson, Stephen D., Radford, Andrew N., Nedelec, Sophie L., Ferrari, Maud C.O., Chivers, Douglas P., McCormick, Mark I., and Meekan, Mark G. (2016) Anthropogenic noise increases fish mortality by predation. Nature Communications, 7. pp. 1-7.

Sun, D., Cheney, K.L., Werminghausen, J., McClure, E.C., Meekan, M.G., McCormick, M.I., Cribb, T.H., and Grutter, A.S. (2016) Cleaner wrasse influence habitat selection of young damselfish. Coral Reefs, 35 (2). pp. 427-436.

Sih, Tiffany L., and Kingsford, Michael J. (2016) Near-reef elemental signals in the otoliths of settling Pomacentrus amboinensis (Pomacentridae). Coral Reefs, 35 (1). pp. 303-315.

Sheaves, M., Baker, R., McLeod, I., Abrantes, K., Wani, J., and Barnett, A. (2016) The conservation status of Niugini black bass: a world-renowned sport fish with an uncertain future. Fisheries Management and Ecology. pp. 1-10. (In Press)

Scott, A., and Baird, A.H. (2015) Trying to find Nemo: low abundance of sea anemones and anemonefishes on central and southern mid-shelf reefs in the Great Barrier Reef. Marine Biodiversity, 45 (2). pp. 327-331.

Scheffer, M., Barrett, S., Carpenter, S.R., Folke, C., Green, A.J., Holmgren, M., Hughes, T.P., Kosten, S., van de Leemput, I.A., Nepstad, D.C., van Nes, E.H., Peeters, E.T.H.M., and Walker, B. (2015) Creating a safe operating space for iconic ecosystems. Science, 347 (6228). pp. 1317-1319.

Sheaves, Marcus, Baker, Ronald, Nagelkerken, Ivan, and Connolly, Rod M. (2015) True value of estuarine and coastal nurseries for fish: incorporating complexity and dynamics. Estuaries and Coasts, 38 (2). pp. 401-414.

Stewart, Michael James, Stewart, Praphaporn, and Rivera-Posada, Jairo (2015) De novo assembly of the transcriptome of Acanthaster plancitestes. Molecular Ecology Resources, 15 (4). pp. 953-966.

Streit, Robert P., Hoey, Andrew S., and Bellwood, David R. (2015) Feeding characteristics reveal functional distinctions among browsing herbivorous fishes on coral reefs. Coral Reefs, 34 (4). pp. 1037-1047.

Sutaria, Dipani, Panicker, Divya, Jog, Ketki, Sule, Mihir, Muralidharan, Rahul, and Bopardikar, Isha (2015) Humpback dolphins (Genus Sousa) in India: an overview of status and conservation issues. Advances in Marine Biology, 72. pp. 229-256.

Schmitt, Klaus, and Duke, Norman C. (2015) Mangrove management, assessment and monitoring. In: Pancel, Laslo, and Köhl, Michael, (eds.) Tropical Forestry Handbook. Springer, Berlin, Germany, pp. 1-29.

Stehfest, Kilian M., Patterson, Toby A., Barnett, Adam, and Semmens, Jayson M. (2015) Markov models and network analysis reveal sex-specific differences in the space-use of a coastal apex predator. Oikos, 124 (3). pp. 307-318.

Saenz-agudelo, Pablo, Jones, Geoffrey P., Thorrold, Simon R., and Planes, Serge (2015) Mothers matter: contribution to local replenishment is linked to female size, mate replacement and fecundity in a fish metapopulation. Marine Biology, 162 (1). pp. 3-14.

Sun, Derek, Cheney, Karen L., Werminghausen, Johanna, Meekan, Mark G., McCormick, Mark I., Cribb, Thomas H., and Grutter, Alexandra S. (2015) Presence of cleaner wrasse increases the recruitment of damselfishes to coral reefs. Biology Letters, 11 (8). pp. 1-5.

Simpfendorfer, Colin A., and Wetherbee, Bradley (2015) Shark and ray life history. Marine and Freshwater Research, 66 (4). I-II.

Silva Leal, Isabela Carolina, de Araújo, Maria Elisabeth, da Cunha, Simone Rabelo, and Cipresso Pereira, Pedro Henrique (2015) The influence of fire-coral colony size and agonistic behaviour of territorial damselfish on associated coral reef fish communities. Marine Environmental Research, 108. pp. 45-54.

Salmo III, Severino G., Lovelock, Catherine E., and Duke, Norman C. (2014) Assessment of vegetation and soil conditions in restored mangroves interrupted by severe tropical typhoon 'Chan-hom' in the Philippines. Hydrobiologia, 733 (1). pp. 85-102.

Sheaves, Marcus, Brookes, Justin, Coles, Robert, Freckelton, Marnie, Groves, Paul, Johnston, Ross, and Wingberg, Pia (2014) Repair and revitalisation of Australia's tropical estuaries and coastal wetlands: opportunities and constraints for the reinstatement of lost function and productivity. Marine Policy, 47. pp. 23-38.

Stella, J.S, Munday, P.L., Walker, S.P.W., Pratchett, M.S., and Jones, G.P. (2014) From cooperation to combat: adverse effect of thermal stress in a symbiotic coral-crustacean community. Oecologia, 174 (4). pp. 1187-1195.

Sørensen, Christina, Munday, Philip L., and Nilsson, Göran E. (2014) Aerobic vs. anaerobic scope: sibling species of fish indicate that temperature dependence of hypoxia tolerance can predict future survival. Global Change Biology, 20 (3). pp. 724-729.

Sheaves, Marcus, Abrantes, Kátya G., and Johnston, Ross (2014) Deluge Inlet, a pristine small tropical estuary in north-eastern Australia. In: Wolanski, Eric, (ed.) Estuaries of Australia in 2050 and Beyond. Estuaries of the World . Springer, Dordrecht, The Netherlands, pp. 261-275.

Stieglitz, Thomas (2014) Groundwater-ocean interaction and its effects on coastal ecological processes: are there groundwater-dependant ecosystems in the coastal zone? In: Abstracts from Goldschmidt 2014, p. 2385. From: Goldschmidt 2014 Conference, 8-13 June 2014 , Sacramento, CA, USA.

Schlaff, Audrey M., Heupel, Michelle R., and Simpfendorfer, Colin A. (2014) Influence of environmental factors on shark and ray movement, behaviour and habitat use: a review. Reviews in Fish Biology and Fisheries, 24 (4). pp. 1089-1103.

Sheaves, Marcus, Sheaves, Janine, Stegemann, Krista, and Molony, Brett (2014) Resource partitioning and habitat-specific dietary plasticity of two estuarine sparid fishes increase food web complexity. Marine and Freshwater Research, 65 (2). pp. 114-123.

Sato, Yui, Willis, Bette L., and Bourne, David G. (2013) Pyrosequencing-based profiling of archaeal and bacterial 16S rRNA genes identifies a novel archaeon associated with black band disease in corals. Environmental Microbiology, 15 (11). pp. 2994-3007.

Stegemann, Krista Elizabeth (2013) Spatio-temporal patterns of faunal distribution along a near-pristine estuarine edge environment. Masters (Research) thesis, James Cook University.

Silva Leal, Isabela Carolina, Cipresso Pereira, Pedro Herique, and de Araújo, Maria Elisabeth (2013) Coral reef fish association and behaviour on the fire coral Millepora spp. in north-east Brazil. Journal of the Marine Biological Association of the United Kingdom, 93 (6). pp. 1703-1711.

Shaw, Emily C., Munday, Philip L., and McNeil, Ben I. (2013) The role of CO₂ variability and exposure time for biological impacts of ocean acidification. Geophysical Research Letters, 40 (17). pp. 4685-4688.

Stieglitz, Thomas (2013) Habitat engineering by decadal-scale bioturbation around shipwrecks on the Great Barrier Reef mid-shelf. Marine Ecology Progress Series, 477. pp. 29-40.

Sheaves, Marcus (2013) Mangrove fish assemblages and ecological equivalence: reply to Castellanos-Galindo & Krumme (2013). Marine Ecology Progress Series, 474. pp. 303-304.

Sheaves, Marcus, Johnston, Ross, Johnson, Ashlee, Baker, Ronald, and Connolly, Rod M. (2013) Nursery function drives temporal patterns in fish assemblage structure in four tropical estuaries. Estuaries and Coasts, 36 (5). pp. 893-905.

Salmo, Severino G., Lovelock, Catherine, and Duke, Norman C. (2013) Vegetation and soil characteristics as indicators of restoration trajectories in restored mangroves. Hydrobiologia, 720 (1). pp. 1-18.

Schmidt-Roach, Sebastian, Miller, Karen J., Woolsey, Erika, Gerlach, Gabriele, and Baird, Andrew H. (2012) Broadcast spawning by Pocillopora species on the Great Barrier Reef. PLoS ONE, 7 (12). e50847.

Sun, D., Blomberg, S.P., Cribb, T.H., McCormick, M.I., and Grutter, A.S. (2012) The effects of parasites on the early life stages of a damselfish. Coral Reefs, 31 (4). pp. 1065-1075.

Smith , Timoth M., Jenkins, Gregory P., and Hutchinson, Neil (2012) Seagrass edge effects on fish assemblages in deep and shallow habitats. Estuarine, Coastal and Shelf Science , 115. pp. 291-299.

Sprenger, Dennis, Dingemanse, Niels J., Dochtermann, Ned A., Theobald, Jennifer, and Walker, Stefan P.W. (2012) Aggressive females become aggressive males in a sex-changing reef fish. Ecology Letters, 15 (9). pp. 986-992.

Sheaves, Marcus (2012) Ecosystem equivalence and the ability to generalise: insights from global consistencies in mangrove fish assemblages. Marine Ecology Progress Series, 461. pp. 137-149.

Sato, Yui (2012) Ecology and microbiology of black band disease: new insights into the etiology of an old coral disease. PhD thesis, James Cook University.

Simpfendorfer, Colin A., and Heupel, Michelle R. (2012) Assessing habitat use and movement. In: Carrier, Jeffrey C., Musick, John A., and Heithaus, Michael R., (eds.) Biology of Sharks and Their Relatives. CRC Marine Biology Series . CRC Press, London, UK, pp. 579-601.

Sheppard, C.R.C., Ateweberhan, M., Bowen, B.W., Carr, P., Chen, C.A., Clubbe, C., Craig, M.T., Ebinghaus, R., Eble, J., Fitzsimmons, N., Gaither, M.R., Gan, C-H., Gollock, M., Guzman, N., Graham, N.A.J., Harris, A., Jones, R., Keshavmurthy, S., Koldewey, H., Lundin, C.G., Mortimer, J.A., Obura, D., Pfeiffer, M., Price, A.R.G., Purkis, S., Raines, P., Readman, J.W., Riegl, B., Rogers, A., Schleyer, M., Seaward, M.R.D., Sheppard, A.L.S., Tamelander, J., Turner, J.R., Visram, S., Vogler, C., Vogt, S., Wolschke, H., Yang, J. M-C., Yang, S-Y., and Yesson, C. (2012) Reefs and islands of the Chagos Archipelago, Indian Ocean: why it is the world's largest no-take marine protected area. Aquatic Conservation: marine and freshwater ecosystems , 22 (2). pp. 232-261.

Saggiomo, Silvia L.A., and Seymour, Jamie E. (2012) Cardiotoxic effects of venom fractions from the Australian box jellyfish Chironex fleckeri on human myocardiocytes. Toxicon, 60 (3). pp. 391-395.

Stella, Jessica (2012) Evidence of corallivory by the keyhole limpet Diodora galeata. Coral Reefs, 31 (2). p. 579.

Sheaves, Marcus, Johnston, Ross, and Connolly, Rod M. (2012) Fish assemblages as indicators of estuary ecosystem health. Wetlands Ecology and Management, 20 (6). pp. 477-490.

Sheaves, Marcus, Johnston, Ross, Connolly, Rod M., and Baker, Ronald (2012) Importance of estuarine mangroves to juvenile banana prawns. Estuarine, Coastal and Shelf Science , 114. pp. 208-219.

Saenz-Agudelo, Pablo, Jones, Geoffrey P., Thorrold, Simon R., and Planes, Serge (2012) Patterns and persistence of larval retention and connectivity in a marine fish metapopulation. Molecular Ecology, 21 (19). pp. 4695-4705.

Simpfendorfer, Colin A., Olsen, Esben M., Heupel, Michelle, and Moland, Even (2012) Three-dimensional kernel utilization distributions improve estimates of space use in aquatic animals. Canadian Journal of Fisheries and Aquatic Sciences, 69 (3). pp. 565-572.

Stieglitz, Thomas C. (2012) The Yongala's "Halo of Holes" - systematic bioturbation close to a shipwreck. In: Harris, Peter T., and Baker, Elaine K., (eds.) Seafloor Geomorphology as Benthic Habitat: GeoHAB atlas of seafloor geomorphic features and benthic habitats. Elsevier, London, pp. 277-287.

Saunders, Richard J., Fowler, Anthony J., and Gillanders, Bronwyn M. (2012) The use of food resources by 0+ snapper, Chrysophrys auratus, from northern Spencer Gulf, South Australia. Marine and Freshwater Research, 63 (8). pp. 680-686.

Simpson, Stephen D, Munday, Philip, Wittenrich, Matthew, Manassa, Rachel, Dixson, Danielle, Gagliano, Monica, and Yan, Hong Y (2011) Ocean acidification erodes crucial auditory behaviour in a marine fish. Biology Letters, 7 (6). pp. 917-920.

Saenz-Agudelo, Pablo, Jones, Geoffrey P., Thorrold, Simon R., and Planes, Serge (2011) Connectivity dominates larval replenishment in a coastal reef fish metapopulation. Proceedings of the Royal Society of London Series B, Biological Sciences, 278 (1720). pp. 2954-2961.

Stella, J.S., Munday, P.L., and Jones, G.P. (2011) Effects of coral bleaching on the obligate coral-dwelling crab Trapezia cymodoce. Coral Reefs, 30 (3). pp. 719-727.

Sato, Y., Bourne, D.G., and Willis, B.L. (2011) Effects of temperature and light on the progression of black band disease on the reef coral, Montipora hispida. Coral Reefs, 30 (3). pp. 753-761.

Stella, Jessica S., Pratchett, Morgan S., Hutchings, Pat A., and Jones, Geoffrey P. (2011) Coral-associated invertebrates: diversity, ecology importance and vulnerability to disturbance. Oceanography and Marine Biology: an annual review, 49. pp. 43-104.

Saenz-Agudelo, Pablo (2011) Estimating connectivity in coral reef fish populations: a tool for understanding stability and resilience of marine ecosystems. PhD thesis, James Cook University.

Souter, P., Bay, L.K., Andreakis, N., Császár, N., Seneca, F.O., and van Oppen, M.J.H. (2011) A multilocus, temperature stress-related gene expression profile assay in Acropora millepora, a dominant reef-building coral. Molecular Ecology Resources, 11 (2). pp. 328-334.

Simpfendorfer, Colin A., Yeiser, Beau G., Wiley, Tonya R., Poulakis, Gregg R., Stevens, Philip W., and Heupel, Michelle R. (2011) Environmental influences on the spatial ecology of juvenile smalltooth sawfish (Pristis pectinata): results from acoustic monitoring. PLoS One, 6 (2). pp. 1-12.

Saenz-Agudelo, P., Jones, G.P., Thorrold, S.R., and Planes, S. (2011) Detrimental effects of host anemone bleaching on anemonefish populations. Coral Reefs, 30 (2). pp. 497-506.

Scaps, P, and Haapkyla, J (2011) Focal white spots on Porites spp. from the north Andaman Sea, Western Thailand and the Wakatobi Marine National Park, Indonesia. Galaxea, Journal of Coral Reef Studies, 13. pp. 3-4.

Sale, Peter F., Feary, David, Burt, John A., Bauman, Andrew G., Cavalcante, Geórgenes H., Drouillard, Kenneth G., Kjerfve, Björn, Marquis, Elise, Trick, Charles G., Usseglio, Paolo, and Van Lavieren, Hanneke (2011) The growing need for sustainable ecological management of marine communities of the Persian Gulf. Ambio, 40 (1). pp. 4-17.

Sheppard, James K., Marsh, Helene, Jones, Rhondda E., and Lawler, Ivan R. (2010) Dugong habitat use in relation to seagrass nutrients, tides, and diel cycles. Marine Mammal Science, 26 (4). pp. 855-879.

Sheaves, Marcus, Johnston, Ross, and Connolly, Rod M. (2010) Temporal dynamics of fish assemblages of natural and artificial tropical estuaries. Marine Ecology Progress Series, 410. pp. 143-157.

Sabetian, Armagan (2010) Parrotfish fisheries and population dynamics: a case-study from Solomon Islands. PhD thesis, James Cook University.

Sheaves, Marcus, and Johnston, Ross (2010) Implications of spatial variability of fish assemblages for monitoring of Australia’s tropical estuaries. Aquatic Conservation: marine and freshwater ecosystems , 20 (3). pp. 348-356.

Sato, Yui, Willis, Bette L., and Bourne, David G. (2010) Successional changes in bacterial communities during the development of black band disease on the reef coral, Montipora hispida. ISME Journal, 4 (2). pp. 203-214.

Salmo, Severino G., and Duke, Norman C. (2010) Establishing mollusk colonization and assemblage patterns in planted mangrove stands of different ages in Lingayen Gulf, Philippines. Wetlands Ecology and Management, 18 (6). pp. 745-754.

Souter, P., Willis, B.L., Bay, L.K., Caley, M.J., Muirhead, A., and van Oppen, M.J.H. (2010) Location and disturbance affect population genetic structure in four coral species of the genus Acropora on the Great Barrier Reef. Marine Ecology Progress Series, 416. pp. 35-45.

Sale, P.F., Van Lavieren, H., Ablan Lagman, M.C., Atema, J., Butler, M., Fauvelot, C., Hogan, J.D., Jones, G.P., Lindeman, K.C., Paris, C.B., Steneck, R., and Stewart, H.L. (2010) Preserving Reef Connectivity: a Handbook for Marine Protected Area Managers. Report. Coral Reef Targeted Research &Capacity Building for Management Project (CRTR).

Stella, J.S., Jones, G.P., and Pratchett, M.S. (2010) Variation in the structure of epifaunal invertebrate assemblages among coral hosts. Coral Reefs, 29 (4). pp. 957-973.

Sato, Yui, Bourne, David G., and Willis, Bette L. (2009) Dynamics of seasonal outbreaks of black band disease in an assemblage of Montipora species at Pelorus Island (Great Barrier Reef, Australia). Proceedings of the Royal Society of London Series B, 276. pp. 2795-2803.

Sheaves, Marcus, and Johnston, Ross (2009) Ecological drivers of spatial variability among fish fauna of 21 tropical Australian estuaries. Marine Ecology Progress Series, 385. pp. 245-260.

Steneck, R.S., Paris, C.B., Arnold, S.N., Ablan-Lagman, M.C., Alcala, A.C., Butler, M.J., McCook, L.J., Russ, G.R., and Sale, P.F. (2009) Thinking and managing outside the box: coalescing connectivity networks to build region-wide resilience in coral reef ecosystems. Coral Reefs, 28 (2). pp. 367-378.

Saenz-Agudelo, P., Jones, G.P., Thorrold, S.R., and Planes, S. (2009) Estimating connectivity in marine populations: an empirical evaluation of assignment tests and parentage analysis under different gene flow scenarios. Molecular Ecology, 18 (8). pp. 1765-1776.

Sussman, Meir, Mieog, Jos C., Doyle, Jason R., Victor, Steven, Willis, Bette L., and Bourne, David G. (2009) Vibrio Zinc-Metalloprotease causes photoinactivation of coral endosymbionts and coral tissue lesions. PLoS ONE, 4 (2). p. 4511.

Sheppard, James K., Jones, Rhondda E., Marsh, Helene, and Lawler, Ivan R . (2009) Effects of tidal and diel cycles on dugong habitat use. Journal of Wildlife Management, 73 (1). pp. 45-59.

Sheaves, Marcus (2009) Consequences of ecological connectivity: the coastal ecosystem mosaic. Marine Ecology Progress Series, 391. pp. 107-115.

Simpfendorfer, Colin A., and Kyne, Peter M. (2009) Limited potential to recover from overfishing raises concerns for deep-sea sharks, rays and chimaeras. Environmental Conservation, 36. pp. 97-103.

Sheaves, Marcus, Duc, Nguyen Huu , and Khoa, Nguyen Xuan (2008) Ecological attributes of a tropical river basin vulnerable to the impacts of clustered hydropower developments. Marine and Freshwater Research, 59 (11). pp. 971-986.

Steneck, Robert H., Bustamante, Rodrigo H., Dayton, Paul K., Jones, Geoffrey P., and Hobday, Alistair J. (2008) Current status and future trends in kelp forest ecosystems. In: Polunin, Nicholas V.C., (ed.) Aquatic Ecosystems: trends and global prospects. Cambridge University Press, Cambridge, UK, pp. 226-241.

Sofonia, Jeremy J., and Anthony, Kenneth R.N. (2008) High-sediment tolerance in the reef coral Turbinaria mesenterina from the inner Great Barrier Reef lagoon (Australia). Estuarine, Coastal and Shelf Science , 78 (4). pp. 748-752.

Sussman, Meir, Willis, Bette L., Victor, Steven, and Bourne, David G. (2008) Coral pathogens identified for white syndrome (WS) epizootics in the Indo-Pacific. Public Library of Science ONE , 3 (6). pp. 1-14.

Sheaves, Marcus, and Johnston, Ross (2008) Influence of marine and freshwater connectivity on the dynamics of subtropical estuarine wetland fish metapopulations. Marine Ecology Progress Series, 357. pp. 225-243.

Simpfendorfer, Colin Ashley, Heupel, Michelle RaNae, and Collins, Angela B. (2008) Variation in the performance of acoustic receivers and its implication for positioning algorithms in a riverine setting. Canadian Journal of Fisheries and Aquatic Sciences, 65 (3). pp. 482-492.

Scheffer, Marten, van Nes, Egbert H., Holmgren, Milena, and Hughes, Terry (2008) Pulse-driven loss of top-down control: the critical-rate hypothesis. Ecosystems, 11 (2). pp. 226-237.

Srinivas, V. , Baird, Andrew, Kerr, Alexander, and Ram, Sunita (2008) Coastal Bio-shields and their Putative Role During Large Weather Related Disturbance Events IN: Bhalla, R.S, Ram, Sunita and Srinivas, V. (eds) Studies on Vulnerability and Habitat Restoration along the Coromandel Coast. Report Section. FERAL, UNDP-UNTRS, Pondicherry, India .

Simpfendorfer, C. A., Poulakis, G. R., O'Donnell, P. M, and Wiley, T. R. (2008) Growth rates of juvenile smalltooth sawfish Pristis pectinata Latham in the western Atlantic. Journal of Fish Biology, 72 (3). pp. 711-723.

Sheppard, James K. (2008) The spatial ecology of dugongs: applications to conservation management. PhD thesis, James Cook University.

Short, F., Carruthers, T., Dennison, W., and Waycott, M. (2007) Global seagrass distribution and diversity: a bioregional model. Journal of Experimental Marine Biology and Ecology, 350 (1-2). pp. 3-20.

Sheaves, Marcus, Johnston, Ross, and Abrantes, Kátya (2007) Fish fauna of dry tropical and subtropical estuarine floodplain wetlands. Marine and Freshwater Research, 58 (10). pp. 931-943.

Sheaves, Marcus, Abrantes, Katya, and Johnston, Ross (2007) Nursery ground value of an endangered wetland to juvenile shrimps. Wetlands Ecology and Management, 15 (4). pp. 311-327.

Sampey, A., McKinnon, A.D., Meekan, M.G., and McCormick, M.I. (2007) Glimpse into guts: overview of the feeding of larvae of tropical shorefishes. Marine Ecology Progress Series, 339. pp. 243-257.

Sheaves, Marcus, Connolly, Rod, and Johnston, Ross (2007) Assessment of Techniques for Determining the Health of Tropical Estuarine Ecosystems. Report. Marine and Tropical Sciences Research Facility, Cairns. (Unpublished)

Sheaves, Marcus, Johnston, Ross, Molony, Brett, and Shephard, Greg (2007) The effect of impoundments on the structure and function of fish fauna in a highly regulated dry tropics estuary. Estuaries and Coasts, 30 (3). pp. 507-517.

Sheppard, James K., Lawler, Ivan R ., and Marsh, Helene (2007) Seagrass as pasture for seacows: landscape-level dugong habitat evaluation. Estuarine, Coastal and Shelf Science , 71 (1-2). pp. 117-132.

Sheaves, Marcus, Brodie, Jon, Brooke, Brendan, Dale, Pat, Lovelock, Catherine, Waycott, Michelle, Gehrke, Peter, Johnston, Ross, and Baker, Ronald (2007) Vulnerability of coastal and estuarine habitats in the GBR to climate change. In: Johnson, Johanna E., and Marshall, Paul A., (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority and the Australian Greenhouse Office, Townsville, QLD, Australia, pp. 593-620.

Smith-Keune, C., Jerry, D.R., Evans, B.S., McCormick, M.I., Munday, P.L., and Jones, G.P. (2006) Development and characterization of eight new microsatellite markers for the haremic sandperch, Parapercis cylindrica (family Pinguipedidae). Molecular Ecology Resources, 6 (4). pp. 1036-1038.

Srinivasan, M., and Jones, G.P. (2006) Extended breeding and recruitment periods of fishes on a low latitude coral reef. Coral Reefs, 25 (4). pp. 673-682.

Sheaves, Marcus (2006) Is the timing of spawning in sparid fishes a response to sea temperature regimes? Coral Reefs, 25 (4). pp. 655-669.

Srinivasan, Maya (2006) Recruitment in time and space: the dynamics and distributions of reef fish populations on a low latitude coral reef. PhD thesis, James Cook University.

Scardino, Andrew J. (2006) Biomimetic fouling control. PhD thesis, James Cook University.

Sheaves, Marcus, Baker, Ronnie, and Johnston, Ross (2006) Marine nurseries and effective juvenile habitats: an alternative view. Marine Ecology Progress Series , 318. pp. 303-306.

Sheaves, Marcus, Collins, John, Houston, Wayne, Dale, Pat, Revill, Andrew, Johnston, Ross, and Abrantes, Katya (2006) Contribution of floodplain wetland pools to the ecological functioning of the Fitzroy River Estuary. Report. Cooperative Research Centre for Coastal Zone, Estuary and Waterway Management, Brisbane, QLD, Australia.

Salih, Anya, Cox, Guy, Szymczak, Ron, Coles, Steve, Baird, Andrew, Dunstan, Andy, Cocco, Giordana, Mills, Jacqui, and Larkum, Anthony (2006) The role of host-based color and fluorescent pigments in photoprotection and in reducing bleaching stress in corals. In: Proceedings of 10th International Coral Reef Symposium, pp. 746-756. From: 10th International Coral Reef Symposium, 28 June - 2 July, 2004, Okinawa, Japan.

Sheaves, Marcus (2006) Scale-dependent variation in composition of fish fauna among sandy tropical estuarine embayments. Marine Ecology Progress Series, 310. pp. 173-184.

Sampey, Alison (2006) Distributions and diets of the larvae of tropical shorefishes near the northwest cape of Australia. Masters (Research) thesis, James Cook University.

Smyth, Danielle J., Glanfield, Amber, McManus, Donald P., Hacker, Elke, Blair, David, Anderson, Greg J., and Jones, Malcolm K. (2006) Two Isoforms of a Divalent Metal Transporter (DMT1) in Schistosoma mansoni Suggest a Surface-associated Pathway for Iron Absorption in Schistosomes. Journal of Biological Chemistry, 281 (4). pp. 2242-2248.

Selig, Elizabeth R., Harvell, C. Drew, Bruno, John F., Willis, Bette L., Page, Cathie A., Casey, Kenneth S., and Sweatman, Hugh (2006) Analyzing the relationship between ocean temperature anomalies and coral disease outbreaks at broad spatial scales. In: Phinney, Jonathan T., Hoegh-Guldberg, Ove, Kleypas, Joanie, Skirving, William, and Strong, A.l., (eds.) Coral Reefs and Climate Change: Science and Management. Coastal and Estuarine Studies 61 . American Geophysical Union, Washington, DC, pp. 111-128.

Sims, David W., Wearmouth, Victoria J., Southall, Emily J., Hill, Jaqueline M., Moore, Pippa, Rawlinson, Kate, Hutchinson, Neil, Budd, Georgina C., Righton, Dave, Metcalfe, Julian, Nash, Jon, and Morritt, David (2006) Hunt warm, rest cool: bioenergetic strategy underlying diel vertical migration of a benthic shark. Journal of Animal Ecology, 75 (1). pp. 176-190.

Sofonia, Jeremy (2006) Sediment responses of corals from inshore reefs, Great Barrier Reef, Australia. Masters (Research) thesis, James Cook University.

Stead, S.M., Daw, T., Graham, N.A.J., Gray, T.S., Polunin, N.V.C., Robinson, J., and McClanahan, T.R. (2006) Trends in climate change, coastal governance, coral reef ecology and socio-economic variation in the Seychelles. In: World Martitime Technology Conference 2006 (1). From: World Maritime Technology Conference, 08 March 2006, Westminster, London, UK.

Smith, Luke Darren (2005) Resilience and recovery of coral communities on an isolated reef system in Western Australia following a catastrophic mortality event. PhD thesis, James Cook University.

Schaffelke, Britta, and Deane, David (2005) Desiccation tolerance of the introduced marine green alga Codium fragile ssp. Tomentosoides - clues for likely transport vectors. Biological Invasions, 7 (4). pp. 577-587.

Simpfendorfer, Colin A. (2005) Threatened fishes of the world: Pristis pectinata Latham, 1794 (Pristidae). Environmental Biology of Fishes, 73 (1). p. 20.

Sale, Peter F., Cowen, Robert K., Danilowicz, Bret S., Jones, Geoffrey P., Kritzer, Jacob P., Lindeman, Kenyon C., Planes, Serge, Polunin, Nicholas V.C., Russ, Garry R., Sadovy, Yvonne J., and Steneck, Robert S. (2005) Critical science gaps impede use of no-take fishery reserves. Trends in Ecology & Evolution, 20 (2). pp. 74-80.

Simpfendorfer, Colin A., Freitas, Garin G., Wiley, Tonya R., and Heupel, Michelle R. (2005) Distribution and habitat partitioning of immature bull sharks (Carcharhinus leucas) in a southwest Florida estuary. Estuaries, 28 (1). pp. 76-83.

Sheaves, Marcus (2005) Nature and consequences of biological connectivity in mangroves systems. Marine Ecology Progress Series, 302. pp. 293-305.

Sims, D.W., Southall, E.J., Waermouth, V.J., Hutchinson, N., Budd, G.C., and Morritt, D. (2005) Refuging behaviour in the nursehound Scyliorhinus stellaris (Chondrichthyes: Elasmobranchii): preliminary evidence from acoustic telemetry. Journal of the Marine Biological Association of the United Kingdom, 85. pp. 1137-1140.

Schaffelke, Britta, Mellors, Jane, and Duke, Norman C. (2005) Water quality in the Great Barrier Reef region: responses of mangrove, seagrass and macroalgal communities. Marine Pollution Bulletin, 51 (1-4). pp. 279-296.

Smith, Shawn, and McCormick, Mark I. (2004) Efficacy of passive integrated transponder tags to determine spawning-site visitations by a tropical fish. Coral Reefs, 23 (4). pp. 570-577.

Schaffelke, Britta, Heimann, Kirsten, Marshall, Paul A, and Ayling, A.M. (2004) Blooms of Chrysocystis fragilis on the Great Barrier Reef. Coral Reefs, 23 (4). p. 514.

Sampey, A., Meekan, M.G., Carleton, J.H., McKinnon, A.D., and McCormick, M.I. (2004) Temporal patterns in distributions of tropical fish larvae on the North West Shelf of Australia. Marine and Freshwater Research, 55 (5). pp. 473-487.

Swanson, Rebecca L., Williamson, Jane E., de Nys, Rocky, Kumar, Naresh, Bucknall, Martin P., and Steinberg, Peter D. (2004) Induction of settlement of larvae of the sea urchin Holopneustes purpurascens by histamine from a host alga. Biological Bulletin, 206 (3). pp. 161-172.

Syms, Craig, and Jones, Geoffrey P. (2004) Habitat structure, disturbance and the composition of sand-dwelling goby assemblages in a coral reef lagoon. Marine Ecology Progress Series, 268. pp. 221-230.

Schubert, Melissa, Munday, Philip L., Caley, M. Julian, Jones, Geoffrey P., and Llewellyn, Lyndon E. (2003) The toxicity of skin secretions from coral-dwelling gobies and their potential role as a predator deterrent. Environmental Biology of Fishes, 67 (2). pp. 359-367.

Saveh Doroudi, Mehdi S., and Southgate, Paul C. (2003) Embryonic and larval development of Pinctada margaritifera (Linnaeus, 1758). Molluscan Research, 23 (2). pp. 101-107.

Si, Aung, Bellwood, O., and Alexander, C.G. (2002) Evidence for filter-feeding by the wood-boring isopod, Sphaeroma terebrans (Crustacea: Peracarida). Journal of Zoology, 256 (4). pp. 463-471.

Sheaves, Marcus (2001) Are there really few piscivorous fishes in shallow estuarine habitats? Marine Ecology-Progress Series, 222. pp. 279-290.

Stewart, B.D., and Jones, G.P. (2001) Associations between the abundance of piscivorous fishes and their prey on coral reefs: implications for prey-fish mortality. Marine Biology, 138 (2). pp. 383-397.

Schulz, Melissa K., and Alexander, C.G. (2001) Aggressive behaviour of Caprella Scaura Typica Mayer, 1890. (Crustacea: Amphipoda). Marine and Freshwater Behaviour and Physiology, 34 (3). pp. 181-187.

Sheaves, Marcus, and Molony, Brett (2001) Coherent patterns of abundance and size of a tropical snapper in dynamic estuary systems. Wetlands Ecology and Management, 9 (5). pp. 429-439.

Syms, Craig, and Jones, Geoffrey P. (2001) Soft corals exert no direct effects on coral reef fish assemblages. Oecologia, 127 (4). pp. 560-571.

St John, Jill, Russ, Gary R., Brown, Ian W., and Squire, Lyle C. (2001) The diet of the large coral reef serranid Plectropomus leopardus in two fishing zones on the Great Barrier Reef, Australia. Fishery Bulletin, 99 (1). pp. 180-192.

Sheaves, Marcus, and Molony, Brett (2000) Short-circuit in the mangrove food chain. Marine Ecology Progress Series, 199. pp. 97-109.

Stewart, Bryce D., and Beukers, Joanne S. (2000) Baited technique improves censuses of cryptic fish in complex habitats. Marine Ecology-Progress Series, 197. pp. 259-272.

Samoilys, Melita Anne (2000) Reproductive dynamics of an exploited serranid on the Great Barrier Reef. PhD thesis, James Cook University.

Semmens, Jayson M., and Moltschaniwskyj, Natalie A. (2000) An examination of variable growth in the loliginid squid Sepioteuthis lessoniana: a whole animal and reductionist approach. Marine Ecology-Progress Series, 193. pp. 135-141.

Samoilys, Melita A., and Roelofs, Anthony (2000) Defining the reproductive biology of a large serranid Plectropomus leopardus. Report. CRC Reef Research Centre, Townsville, QLD, Australia.

Samoilys, Melita A., and Carlos, Gary (2000) Determining methods of underwater visual census for estimating the abundance of coral reef fishes. Environmental Biology of Fishes, 57 (3). pp. 289-304.

Syms, Craig, and Jones, Geoffrey P. (2000) Disturbance, habitat structure, and the dynamics of a coral-reef fish community. Ecology, 81 (10). pp. 2714-2729.

Si, Aung, Alexander, C.G., and Bellwood, O. (2000) Habitat partitioning by two wood-boring invertebrates in a mangrove system in tropical Australia. Journal of the Marine Biological Association of the United Kingdom, 80 (6). pp. 1131-1132.

Stobart, Ben (2000) A taxonomic reappraisal of Montipora digitata based on genetic and morphometric evidence. Zoological Studies, 39 (3). pp. 179-190.

Stump, R.J.W., and Lucas, J.S. (1999) Age estimation and patterns of growth in Acanthaster planci: a reply to Souter et al. (1997). Marine and Freshwater Research, 50 (1). pp. 71-72.

Sheaves, M.J., Molony, B.W., and Tobin, A.J. (1999) Spawning migrations and local movements of a tropical sparid fish. Marine Biology, 133 (1). pp. 123-128.

Smith, L.D., and Hughes, T.P. (1999) An experimental assessment of survival, re-attachment and fecundity of coral fragments. Journal of Experimental Marine Biology and Ecology, 235 (1). pp. 147-164.

Steele, Mark A., Forrester, Graham E., and Almany, Glenn R. (1998) Influences of predators and conspecifics on recruitment of a tropical and a temperate reef fish. Marine Ecology Progress Series, 172. pp. 115-125.

Syms, Craig (1998) Habitat association, disturbance dynamics, and the role of spatial scale in structuring coral reef fish assemblages. PhD thesis, James Cook University.

Syms, Craig, and Jones, Geoff (1998) Community assembly of fish on small patch reefs: direct vs indirect disturbance. In: Jones, G.P., Doherty, P.J., Mapstone, B.D., and Howlett, L., (eds.) ReeFish '95: recruitment and population dynamics of coral reef fishes. CRC Reef Research Centre, Townsville, QLD, Australia, pp. 238-251.

Sheaves, Marcus (1998) Spatial patterns in estuarine fish faunas in tropical Queensland: a reflection of interaction between long-term physical and biological processes? Marine and Freshwater Research, 49 (1). pp. 31-40.

Samoilys, Melita A. (1997) Periodicity of spawning aggregations of coral trout Plectropomus leopardus (Pisces: Serranidae) on the northern Great Barrier Reef. Marine Ecology Progress Series, 160. pp. 149-159.

Sheaves, Marcus (1996) Do spatial differences in the abundance of two serranid fishes in estuaries of tropical Australia reflect long-term salinity patterns? Marine Ecology Progress Series, 137. pp. 39-49.

Sheaves, M.J. (1996) Habitat-specific distributions of some fishes in a tropical estuary. Marine and Freshwater Research, 47 (6). pp. 827-830.

Sheaves, Marcus John (1995) Estuaries as juvenile habitats for lutjanid and serranid fishes in tropical northeastern Australia. PhD thesis, James Cook University.

Sheaves, Marcus John (1995) Effect of design modifications and soak time variations on Antillean-Z fish trap performance in a tropical estuary. Bulletin of Marine Science, 56 (2). pp. 475-489.

Sheaves, Marcus (1995) Large lutjanid and serranid fishes in tropical estuaries: are they adults or juveniles? Marine Ecology Progress Series, 129. pp. 31-40.

Sheaves, M.J. (1993) Patterns of movement of some fishes within an estuary in Tropical Australia. Australian Journal of Marine and Freshwater Research, 44 (6). pp. 867-880.

Sheaves, M.J. (1992) Patterns of distribution and abundance of fishes in different habitats of a mangrove-lined tropical estuary, as determined by fish trapping. Australian Journal of Marine and Freshwater Research, 43 (6). pp. 1461-1479.

Shelley, Colin Charles (1989) Growth, sclerochronology and development of the Tridacnidae, with particular reference to Hippopus hippopus. PhD thesis, James Cook University of North Queensland.

Sutton, D.C., and Clements, K.D. (1988) Aerobic, heterotrophic gastrointestinal microflora of tropical marine fishes. In: Proceedings of the 6th International Coral Reef Symposium (3), pp. 185-190. From: 6th International Coral Reef Symposium, 8-12 August 1988, Townsville, QLD, Australia.

Shelley, C.C. (1988) Growth rates of Hippopus hippopus from Orpheus Island, Great Barrier Reef. In: Copland, J.W., and Lucas, J.S., (eds.) Giant Clams in Asia and the Pacific. ACIAR Monograph Series, 9 . Australian Centre for International Agricultural Research, Canberra, ACT, Australia, pp. 207-212.

Spenceley, Anthony Phillip (1980) The geomorphological and zonational development of mangrove swamps in the Townsville area, North Queensland. PhD thesis, James Cook University.

T

Tol, Samantha J., Coles, Rob G., and Congdon, Bradley C. (2016) Dugong dugon feeding in tropical Australian seagrass meadows: implications for conservation planning. PeerJ, 4.

Thomson, Alexandra C.G., York, Paul H., Smith, Tim M., Sherman, Craig D.H., Booth, David J., Keough, Michael J., Ross, D. Jeff, and Macreadie, Peter I. (2016) Response to "Comment on 'Seagrass viviparous propagules as a potential long-distance dispersal mechanism' by A. C. G. Thomson et al". Estuaries and Coasts, 39. pp. 875-876.

Thomas, Christopher J., Bridge, Thomas C.L., Figueiredo, Joana, Deleersnijder, Eric, and Hanert, Emmanuel (2015) Connectivity between submerged and near-sea-surface coral reefs: can submerged reef populations act as refuges? Diversity and Distributions, 21 (10). pp. 1254-1266.

Taylor, Brett M., Lindfield, Steven J., and Choat, J. Howard (2015) Hierarchical and scale-dependent effects of fishing pressure and environment on the structure and size distribution of parrotfish communities. Ecography, 38. pp. 520-530.

Thomson, Alexandra C.G., York, Paul H., Smith, Timothy M., Sherman, Craig D.H., Booth, David J., Keough, Michael J., Ross, D. Jeff, and Macreadie, Peter I. (2015) Seagrass viviparous propagules as a potential long-distance dispersal mechanism. Estuaries and Coasts, 38. pp. 927-940.

Tobin, Andrew J., Mapleston, Amos, Harry, Alastair V., and Espinoza, Mario (2014) Big fish in shallow water; use of an intertidal surf-zone habitat by large-bodied teleosts and elasmobranchs in tropical northern Australia. Environmental Biology of Fishes, 97 (7). pp. 821-838.

Trave, Claudia, and Sheaves, Marcus (2014) Bimini Islands: a characterization of the two major nursery areas; status and perspectives. SpringerPlus, 3. pp. 1-9.

Trave, Claudia, and Sheaves, Marcus (2014) Ecotone analysis: assessing the impact of vehicle transit on saltmarsh crab population and ecosystem. SpringerPlus, 3 (1). pp. 1-9.

Torda, G., Lundgren, P., Willis, B.L., and van Oppen, M.J.H. (2013) Genetic assignment of recruits reveals short- and long-distance larval dispersal in Pocillopora damicornis on the Great Barrier Reef. Molecular Ecology, 22 (23). pp. 5821-5834.

Trapon, M.L., Pratchett, M.S., Hoey, A.S., and Baird, A.H. (2013) Influence of fish grazing and sedimentation on the early post-settlement survival of the tabular coral Acropora cytherea. Coral Reefs, 32 (4). pp. 1051-1059.

Trapon, Melanie Lea (2013) Variation in early post-settlement growth and mortality of scleractinian corals. PhD thesis, James Cook University.

Thibaut, Loïc M., and Connolly, Sean R. (2013) Understanding diversity–stability relationships: towards a unified model of portfolio effects. Ecology Letters, 16 (2). pp. 140-150.

Trapon, M.L., Pratchett, M.S., Adjeroud, M., Hoey, A.S., and Baird, A.H. (2013) Post-settlement growth and mortality rates of juvenile scleractinian corals in Moorea, French Polynesia versus Trunk Reef, Australia. Marine Ecology Progress Series, 488. pp. 157-170.

Torda, G., Lundgren, P., Willis, B. L., and van Oppen, M.J.H. (2013) Revisiting the connectivity puzzle of the common coral Pocillopora damicornis. Molecular Ecology, 22 (23). pp. 5805-5820.

Torda, Gergely, Schmidt-Roach, Sebastian, Peplow, Lesa M., Lundgren, Petra, and van Oppen, Madeleine J.H. (2013) A rapid genetic assay for the identification of the most common Pocillopora damicornis genetic lineages on the Great Barrier Reef. PLoS One, 8 (3). pp. 1-5.

Thuiller, Wilfried, Münkenmüller, Tamara, Lavergne, Sébastien, Mouillot, David, Mouquet, Nicolas, Schiffers, Katja, and Gravel, Dominique (2013) A road map for integrating eco-evolutionary processes into biodiversity models. Ecology Letters, 16 (S1). pp. 94-105.

Torda, Gergely (2012) Genetic assessment of population structure and the origin of recruits in brooding corals: understanding population connectivity on the Great Barrier Reef on various timescales. PhD thesis, James Cook University.

Templeman, Michelle A., and Kingsford, Michael J. (2012) Variation in soft tissue chemistry among scyphozoan and cubozoan jellyfishes from the Great Barrier Reef, Australia. Hydrobiologia, 690 (1). pp. 279-290.

Thibaut, Loïc M., Connolly, Sean R., and Sweatman, Hugh P.A. (2012) Diversity and stability of herbivorous fishes on coral reefs. Ecology, 93 (4). pp. 891-901.

Takahashi, Miwa, McCormick, Mark, Munday, Philip, and Jones, Geoffrey (2012) Influence of seasonal and latitudinal temperature variation on early life-history traits of a coral reef fish. Marine and Freshwater Research, 63. pp. 856-864.

Taylor, Brett, McIlwain, Jennifer L., and Kerr, Alexander (2012) Marine reserves and reproductive biomass: a case study of a heavily targeted reef fish. PLoS One, 7 (6). pp. 1-16.

Tan, James C.H., Pratchett, Morgan S., Bay, Line K., and Baird, Andrew H. (2012) Massive coral mortality following a large flood event. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-4. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Trapon, Mélanie L., Pratchett, Morgan S., and Penin, Lucie (2011) Comparative effects of different disturbances in coral reef habitats in Moorea, French Polynesia. Journal of Marine Biology, 2011. pp. 1-11.

Taylor, Helen, and Rasheed, Michael (2011) Impacts of a fuel oil spill on seagrass meadows in a subtropical port, Gladstone, Australia: the value of long-term marine habitat monitoring in high risk areas. Marine Pollution Bulletin, 63 (5-12). pp. 431-437.

Thomson, D.P., and Frisch, A.J. (2010) Extraordinarily high coral cover on a nearshore, high-latitude reef in south-west Australia. Coral Reefs, 29 (4). pp. 923-927.

Torda, Gergely, Suárez, Pedro López, and Jurado, Luís Felipe López (2010) First records of Fraser’s Dolphin Lagenodelphis hosei for the Cape Verde Islands. Zoologia Caboverdiana, 1 (1). pp. 71-73.

Trip, Elisabeth L., Choat, J. Howard, Wilson, David T., and Robertson, D. Ross (2008) Inter-oceanic analysis of demographic variati