Items where Subject is "06 BIOLOGICAL SCIENCES > 0602 Ecology > 060205 Marine and Estuarine Ecology (incl Marine Ichthyology)"

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Al Moajil-Cole, Grace (2019) Exploring the role of microbes in coral-algal interactions on the inshore Great Barrier Reef. Masters (Research) thesis, James Cook University.

Anderson, Kristen Deanna (2016) Temporal and spatial variation in the growth of branching corals. PhD thesis, James Cook University.

Albouy, Camille, Leprieur, Fabien, Le Loc'h, François, Mouquet, Nicolas, Meynard, Christine N., Douzery, Emmanuel J.P., and Mouillot, David (2015) Projected impacts of climate warming on the functional and phylogenetic components of coastal Mediterranean fish biodiversity. Ecography, 38 (7). pp. 681-689.

Abrantes, Kátya G., Barnett, Adam, Baker, Ronald, and Sheaves, Marcus (2015) Habitat-specific food webs and trophic interactions supporting coastal-dependent fishery species: an Australian case study. Reviews in Fish Biology and Fisheries, 25 (2). pp. 337-363.

Anderson, Kristen D., Heron, Scott F., and Pratchett, Morgan S. (2015) Species-specific declines in the linear extension of branching corals at a subtropical reef, Lord Howe Island. Coral Reefs, 34 (2). pp. 479-490.

Allan, Bridie J.M., Domenici, Paolo, Munday, Philip L., and McCormick, Mark I. (2015) Feeling the heat: the effect of acute temperature changes on predator–prey interactions in coral reef fish. Conservation Physiology, 3 (1). cov011. pp. 1-8.

Abrantes, Kátya G., Johnston, Ross, Connolly, Rod M., and Sheaves, Marcus (2015) Importance of mangrove carbon for aquatic food webs in wet–dry tropical estuaries. Estuaries and Coasts, 38 (1). pp. 383-399.

Atherton, Jennifer Ann, and McCormick, Mark Ian (2015) Active in the sac: damselfish embryos use innate recognition of odours to learn predation risk before hatching. Animal Behaviour, 103. pp. 1-6.

Andrews, Allen H., Choat, John H., Hamilton, Richard J., and DeMartini, Edward E. (2015) Refined bomb radiocarbon dating of two iconic fishes of the Great Barrier Reef. Marine and Freshwater Research, 66 (4). pp. 305-316.

Ainsworth, Tracy D., Krause, Lutz, Bridge, Thomas, Torda, Gergely, Raina, Jean-Baptiste, Zakrzewski, Martha, Gates, Ruth D., Padilla-Gamino, Jacqueline L., Spalding, Heather L., Smith, Celia, Woolsey, Erika S., Bourne, David G., Bongaerts, Pim, Hoegh-Guldberg, Ove, and Leggat, Bill (2015) The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts. ISME Journal: multidisciplinary journal of microbial ecology, 9. pp. 2261-2274.

Allan, Bridie Jean Marie (2015) The effects of climate change on predator-prey interactions in coral reef fish. PhD thesis, James Cook University.

Augé, A.A., Chilvers, B.L., Moore, A.B., and Davis, L.S. (2014) Importance of studying foraging site fidelity for spatial conservation measures in a mobile predator. Animal Conservation, 17 (1). pp. 61-71.

Allan, Bridie J.M., Miller, Gabrielle M., McCormick, Mark I., Domenici, Paolo, and Munday, Philip L. (2014) Parental effects improve escape performance of juvenile reef fish in a high-CO(2) world. Proceedings of the Royal Society of London Series B, Biological Sciences, 281 (1777). 20132179. pp. 1-7.

Arakaki, Seiji, Hutchinson, Neil, and Tokeshi, Mutsunori (2014) Foraging ecology of a large opportunistic predator (adult Lateolabrax latus) on a temperate-subtropical rocky shore. Coastal Ecosystems, 1. pp. 14-27.

Adkins, Merritt Elizabeth (2014) Large bodied fish communities and drivers of use in the shallow waters of a coastal habitat mosaic. Masters (Research) thesis, James Cook University.

Abrantes, Kátya G., Barnett, Adam, and Bouillon, Steven (2014) Stable isotope-based community metrics as a tool to identify patterns in food web structure in east African estuaries. Functional Ecology, 28 (1). pp. 270-282.

Arrigoni, Roberto, Richards, Zoe T., Chen, Chaolun Allen, Baird, Andrew H., and Benzoni, Francesca (2014) Taxonomy and phylogenetic relationships of the coral genera Australomussa and Parascolymia (Scleractinia, Lobophylliidae). Contributions to Zoology, 83 (3). pp. 195-215.

Anderson, Kristen D., and Pratchett, Morgan S. (2014) Variation in size-frequency distributions of branching corals between a tropical versus sub-tropical reef. Marine Ecology Progress Series, 502. pp. 117-128.

Almany, Glenn R., Hamilton, Richard J., Bode, Michael, Matawai, Manuai, Potuku, Tapas, Saenz-Agudelo, Pablo, Planes, Serge, Berumen, Michael L., Rhodes, Kevin L., Thorrold, Simon R., Russ, Garry R., and Jones, Geoffrey P. (2013) Dispersal of grouper larvae drives local resource sharing in a coral reef fishery. Current Biology, 23 (7). pp. 626-630.

Albright, Rebecca, and Mason, Benjamin (2013) Projected near-future levels of temperature and pCO2 reduce coral fertilization success. PLoS ONE, 8 (2). e56468. pp. 1-8.

Abrantes, Kátya, Barnett, Adam, Marwick, Trent R., and Bouillon, Steven (2013) Importance of terrestrial subsidies for estuarine food webs in contrasting East African catchments. Ecosphere, 4 (1). 14. pp. 1-33.

Albert, Simon, Love, Mark, and Brewer, Tom D. (2013) Contrasts in social and ecological assessments of coral reef health in Melanesia. Pacific Science, 67 (3). pp. 409-424.

Allan, Bridie J.M., Domenici, Paolo, McCormick, Mark I., Watson, Sue-Ann, and Munday, Philip L. (2013) Elevated CO2 affects predator-prey interactions through altered performance. PLoS One, 8 (3). e58520. pp. 1-7.

Andrello, Marco, Mouillot, David, Beuvier, Jonathan, Albouy, Camille, Thuiller, Wilfried, and Manel, Stéphanie (2013) Low connectivity between Mediterranean marine protected areas: a biophysical modeling approach for the dusky grouper Epinephelus marginatus. PLoS ONE, 8 (7). e68564. pp. 1-15.

Albouy, Camille, Guilhaumon, François, Leprieur, Fabien, Lasram, Frida Ben Rais, Somot, Samuel, Aznar, Roland, Velez, Laure, Le Loc'h, Francois, and Mouillot, David (2013) Projected climate change and the changing biogeography of coastal Mediterranean fishes. Journal of Biogeography, 40 (3). pp. 534-547.

Abrego, David, Willis, Bette L., and van Oppen, Madeleine J.H. (2012) Impact of light and temperature on the uptake of algal symbionts by coral juveniles. PLoS ONE, 7 (11). e50311. pp. 1-9.

Abrantes, Kátya G., Semmens, Jayson M., Lyle, Jeremy M., and Nichols, Peter D. (2012) Normalisation models for accounting for fat content in stable isotope measurements in salmonid muscle tissue. Marine Biology, 159 (1). pp. 57-64.

Anderson, Kristen, Pratchett, Morgan, and Baird, Andrew (2012) Summer growth rates of corals at Lord Howe Island, Australia. In: Proceedings of the 12th International Coral Reef Symposium. 4C_1. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Aragones, Lemnuel V., Lawler, Ivan, Marsh, Helene, Domning, Daryl, and Hodgson, Amanda (2012) The role of sirenians in aquatic ecosystems. In: Hines, Ellen M., Reynolds III, John E., Aragones, Lemnuel V., Mignucci-Giannoni, Antonio A., and Marmotel, Miriam, (eds.) Sirenian Conservation. University Press of Florida, Florida USA, pp. 4-11.

Aswani, Shankar, Christie, Patrick, Muthiga, Nyawira A., Mahon, Robin, Primavera, Jurgenne H., Cramer, Lori A., Granek, Elise F., Kennedy, Chris J., Wolanski, Eric, and Hacker, Sally (2012) The way forward with ecosystem-based management in tropical contexts: reconciling with existing management systems. Marine Policy, 36 (1). pp. 1-10.

Ainsworth, T.D., Wasmund, K., Ukani, L., Seneca, F., Yellowlees, D., Miller, D., and Leggat, W. (2011) Defining the tipping point. A complex cellular life/death balance in corals in response to stress. Scientific Report, 1. 160. pp. 1-9.

Ateweberhan, M., McClanahan, T.R., Graham, N.A.J., and Sheppard, C.R.C. (2011) Episodic heterogeneous decline and recovery of coral cover in the Indian Ocean. Coral Reefs, 30 (3). pp. 739-752.

Aeby, Greta S., Williams, Gareth J., Franklin, Erik C., Haapkyla, Jessica, Harvell, C. Drew, Neale, Stephen, Page, Cathie A., Raymundo, Laurie, Vargas-Ángel, Bernardo, Willis, Bette L., Work, Thierry M., and Davy, Simon K. (2011) Growth anomalies on the coral genera Acropora and Porites are strongly associated with host density and human population size across the Indo-Pacific. PLoS ONE, 6 (2). e16887. pp. 1-9.

Aeby, G.S., Bourne, D.G., Wilson, B., and Work, T.M. (2011) Coral diversity and the severity of disease outbreaks: a cross-regional comparison of Acropora White Syndrome in a species-rich region (American Samoa) with a species-poor region (Northwestern Hawaiian Islands). Journal of Marine Biology, 2011. 490198.

Abrantes, Kátya Gisela, Lyle, Jeremy Martin, Nichols, Peter D., and Semmens, Jayson Mark (2011) Do exotic salmonids feed on native fauna after escaping from aquaculture cages in Tasmania, Australia? Canadian Journal of Fisheries and Aquatic Sciences, 68 (9). pp. 1539-1551.

Abrantes, Kátya G., and Barnett, Adam (2011) Intrapopulation variations in diet and habitat use in a marine apex predator, the broadnose sevengill shark Notorynchus cepedianus. Marine Ecology Progress Series, 442. pp. 133-148.

Abesamis, Rene A. (2011) Replenishment and connectivity of reef fish populations in the central Philippines. PhD thesis, James Cook University.

Abesamis, R.A., and Russ, G.R. (2010) Patterns of recruitment of coral reef fishes in a monsoonal environment. Coral Reefs, 29 (4). pp. 911-921.

Abrantes, Kátya Gisela, and Sheaves, Marcus (2010) Importance of freshwater flow in terrestrial–aquatic energetic connectivity in intermittently connected estuaries of tropical Australia. Marine Biology, 157 (9). pp. 2071-2086.

Alva-Campbell, Yvette, Floeter, Sergio R., Robertson, D. Ross, Bellwood, David R., and Bernardi, Giacomo (2010) Molecular phylogenetics and evolution of Holacanthus angelfishes (Pomacanthidae). Molecular Phylogenetics and Evolution, 56 (1). pp. 456-461.

Aswani, Shankar, and Sabetian, Armagan (2010) Implications of urbanization for artisanal parrotfish fisheries in the Western Solomon Islands. Conservation Biology, 24 (2). pp. 520-530.

Ardiwijaya, Rizya, Baird, Andrew, Kartawijaya, Tasrif, and Campbell, Stuart (2010) Changes in reef fish biomass in Karimunjawa National Park: a test of the effectiveness of government gazetted marine parks in Indonesia. In: Proceedings of the 11th International Coral Reef Symposium. pp. 1064-1068. From: 11th International Coral Reef Symposium, 07 - 11 July 2008, Fort Lauderdale, FL, USA.

Adjeroud, M., Fernandez, J.M., Carroll, A.G., Harrison, P.L., and Penin, L. (2010) Spatial patterns and recruitment processes of coral assemblages among contrasting environmental conditions in the southwestern lagoon of New Caledonia. Marine Pollution Bulletin, 61 (7-12). pp. 375-386.

Abrantes, Kátya, and Sheaves, Marcus (2010) Use of a δ13C–δ15N relationship to determine animal trophic positions in a tropical Australian estuarine wetland. Austral Ecology, 35 (1). pp. 96-103.

Adjeroud, M., Michonneau, F, Edmunds, P.J., Chancerelle, Y., Lison de Loma, T., Penin, L., Thibaut, L., Vidal-Dupiol, J., Salvat, B., and Galzin, R. (2009) Recurrent disturbances, recovery trajectories, and resilience of coral assemblages on a South Central Pacific reef. Coral Reefs, 28 (3). pp. 775-780.

Abrantes, Kátya, and Sheaves, Marcus (2009) Sources of nutrition supporting juvenile penaeid prawns in an Australian dry tropics estuary. Marine and Freshwater Research, 60 (9). pp. 949-959.

Abrego, David A., van Oppen, Madeleine J.H., and Willis, Bette L. (2009) Onset of algal endosymbiont specificity varies among closely related species of Acropora corals during early ontogeny. Molecular Ecology, 18 (16). pp. 3532-3543.

Almany, G.R., Connolly, S.R., Heath, D.D., Hogan, J.D., Jones, G.P., McCook, L.J., Mills, M., Pressey, R.L., and Williamson, D.H. (2009) Connectivity, biodiversity conservation and the design of marine reserve networks for coral reefs. Coral Reefs, 28 (2). pp. 339-351.

Abrantes, Kátya, and Sheaves, Marcus (2009) Food web structure in a near-pristine mangrove area of the Australian Wet Tropics. Estuarine, Coastal and Shelf Science, 82 (4). pp. 597-607.

Adams, Lisa M., Cumbo, Vivian, and Takabayashi, Misaki (2009) Exposure to sediment enhances primary acquisition of Symbiodinium by asymbiotic coral larvae. Marine Ecology Progress Series, 377. pp. 179-156.

Abrego, David, van Oppen, Madeleine J.H., and Willis, Bette L. (2009) Highly infectious symbiont dominates initial uptake in coral juveniles. Molecular Ecology, 18. pp. 3518-3531.

Abrantes, Katya, and Sheaves, Marcus (2008) Incorporation of terrestrial wetland material into aquatic food webs in a tropical estuarine wetland. Estuarine, Coastal and Shelf Science , 80 (3). pp. 401-412.

Abrego, David, Ulstrup, Karin E., Willis, Bette L., and van Oppen, Madeleine J.H. (2008) Species-specific interactions between algal endosymbionts and coral hosts define their bleaching response to heat and light stress. Proceedings of the Royal Society of London Series B, Biological Sciences, 275 (1648). pp. 2273-2282.

Al-Habsi, S. H., Sweeting, C. J., Polunin, N. V. C., and Graham, Nicholas (2008) δ15N and δ13C elucidation of size structured food webs in a Western Arabian Sea demersal trawl assemblage. Marine Ecology Progress Series, 353. pp. 55-63.

Anthony, Shelley L., and Thomas, Séverine (2008) Coral Husbandry and Long-Term Coral Survival in the Coral Reef Exhibit at Reef HQ Aquarium, Townsville, Australia. Report. Burgers' Zoo, Arnhem, Netherlands.

Anthony, S.L., Page, C.A., Bourne, D.G., and Willis, B.L. (2008) Newly characterized distinct phases of the coral disease 'atramentous necrosis' on the Great Barrier Reef. Diseases of Aquatic Organisms, 81 (3). pp. 255-259.

Abrego, David (2008) Temporal and environmental influences on the early establishment and maintenance of coral-symbiodinium symbioses. PhD thesis, James Cook University.

Abrantes, Kátya Gisela dos Santos (2008) Trophic structure and the importance of terrestrial wetland producers for aquatic food webs in tropical Australian estuaries. PhD thesis, James Cook University.

Arvedlund, M., Munday, P.L., and Takemura, A. (2007) The morphology and ultrastructure of the peripheral olfactory organ in newly metamorphosed coral-dwelling gobies, Paragobiodon xanthosomus Bleeker (Gobiidae, Teleostei). Tissue and Cell, 39 (5). pp. 335-342.

Adjeroud, Mehdi, Pratchett, Morgan, Kospartov, Marie, Lejeusne, Christophe, and Penin, Lucie (2007) Small-scale variability in the size structure of scleractinian corals around Moorea, French Polynesia: patterns across depths and locations. Hydrobiologia, 589 (1). pp. 117-126.

Almany, Glenn R., Peacock, Lisa F., Syms, Craig, McCormick, Mark I., and Jones, Geoffrey P. (2007) Predators target rare prey in coral reef fish assemblages. Oecologia, 152 (4). pp. 751-761.

Anthony, K.R.N., and Kerswell, A.P. (2007) Coral mortality following extreme low tides and high solar radiation. Marine Biology, 151 (5). pp. 1623-1631.

Almany, Glenn R. , Berumen, Michael L., Thorrold, Simon R., Planes, Serge, and Jones, Geoffrey P. (2007) Local replenishment of coral reef fish populations in a marine reserve. Science, 316 (5825). pp. 742-744.

Anthony, Kenneth R.N., Connolly, Sean R., and Hoegh-Guldberg, Ove (2007) Bleaching, energetics, and coral mortality risk: Effects of temperature, light, and sediment regime. Limnology and Oceanography, 52 (2). pp. 716-726.

Anderson, J.L., Laurel, B.J., and Brown, J.A. (2007) Diel changes in behaviour and habitat use by age-O Atlantic cod (Gadus morhua L.) in the laboratory and field. Journal of Experimental Marine Biology and Ecology, 351 (1-2). pp. 267-275.

Aragones, Lemnuel V., Lawler, Ivan R., Foley, William J., and Marsh, Helene (2006) Dugong grazing and turtle cropping: grazing optimization in tropical seagrass systems? Oecologia, 149 (4). pp. 635-647.

Andrefouet, S., Ouillon, S., Brinkman, R., Falter, J., Douillet, P., Wolk, F., Smith, R., Garen, P., Martinez, E., Laurent, V., Lo, C., Remoissenet, G., Scourzic, B., Gilbert, A., Deleersnijder, E., Steinberg, C., Choukroun, S., and Buestel, D. (2006) Review of solutions for 3D hydrodynamic modeling applied to aquaculture in South Pacific atoll lagoons. Marine Pollution Bulletin, 52 (10). pp. 1138-1155.

Alcala, AngelC., and Russ, Garry R. (2006) No-take Marine Reserves and Reef Fisheries Management in the Philippines: a new people power revolution. Ambio, 35 (5). pp. 245-254.

Abesamis, Rene A., Alcala, Angel C., and Russ, Garry R. (2006) How much does the fishery at Apo Island benefit from spillover of adult fish from the adjacent marine reserve? Fishery Bulletin, 104 (3). pp. 360-375.

Abesamis, Rene, Russ, Garry, and Alcala, Angel (2006) Gradients of abundance of fish across no-take marine reserve boundaries: evidence from Philippine coral reefs. Aquatic Conservation: marine and freshwater ecosystems , 16 (4). pp. 349-371.

Almany, Glenn R., and Webster, Michael S. (2006) The predation gauntlet: early post-settlement mortality in reef fishes. Coral Reefs, 25 (1). pp. 19-22.

Abesamis, Rene A., and Russ, Garry R. (2005) Density-dependent spillover from a marine reserve: long-term evidence. Ecological Applications, 15 (5). pp. 1798-1812.

Arthur, Rohan, Done, Terence J., and Marsh, Helene (2005) Benthic recovery four years after an El Niño-induced coral mass mortality in the Lakshadweep atolls. Current Science, 89 (4). pp. 694-699.

Annese, Danielle M., and Kingsford, Michael J. (2005) Distribution, movements and diet of nocturnal fishes on temperate reefs. Environmental Biology of Fishes, 72 (2). pp. 161-174.

Alcala, Angel C., Russ, Garry R., Maypa, Aileen P., and Calumpong, Hilconida C. (2005) A long-term, spatially replicated experimental test of the effect of marine reserves on local fish yields. Canadian Journal of Fisheries and Aquatic Sciences, 62 (1). pp. 98-108.

Anthony, K.R.N., Hoogenboom, M. O., and Connolly, S.R. (2005) Adaptive variation in coral geometry and the optimization of internal colony light climates. Functional Ecology, 19 (1). pp. 17-26.

Andre, Jessica, Gyuris, Emma, and Lawler, Ivan R. (2005) Comparison of the diets of sympatric dugongs and green turtles on the Orman Reefs, Torres Strait, Australia. Wildlife Research, 32 (1). pp. 53-62.

Abesamis, Rene A. (2005) Patterns and mechanisms of spillover from marine reserves. Masters (Research) thesis, James Cook University.

Anthony, Kenneth R. N., and Connolly, Sean R. (2004) Environmental limits to growth: physiological niche boundaries of corals along turbidity - light gradients. Oecologia, 141 (3). pp. 373-384.

Almany, Glenn R. (2004) Does increased habitat complexity reduce predation and competition in coral reef fish assemblages? Oikos, 106 (2). pp. 275-284.

Ackerman, John L., Bellwood, David R., and Brown, James H. (2004) The contribution of small individuals to density-body size relationships: examination of energetic equivalence in reef fishes. Oecologia, 139 (4). pp. 568-571.

Almany, Glenn R (2004) Differential effects of habitat complexity, predators and competitors on abundance of juvenile and adult coral reef fishes. Oecologia, 141 (1). pp. 105-113.

Ackerman, J. L. (2004) Geographic variation in size at age of the coral reef fish, Thalassoma lunare (family: Labridae) : a contribution to life history theory. PhD thesis, James Cook University.

Almany, Glenn R., and Webster, Michael S. (2004) Odd species out as predators reduce diversity of coral-reef fishes. Ecology, 85 (11). pp. 2933-2937.

Abdulla, Ameer (2004) Predator-prey interactions in coral reef fish : the implications of predation risk on the behavior and growth of prey. PhD thesis, James Cook University.

Almany, Glenn R (2004) Priority effects in coral reef fish communities of the Great Barrier Reef. Ecology, 85 (10). pp. 2872-2880.

Anthony, Kenneth R.N., and Hoegh-Guldberg, Ove (2003) Kinetics of photoacclimation in corals. Oecologia, 134 (1). pp. 23-31.

Adams, S. (2003) Morphological ontogeny of the gonad of three plectropomid species through sex differentiation and transition. Journal of Fish Biology, 63 (1). pp. 22-36.

Almany, Glenn R (2003) Priority effects in coral reef fish communities. Ecology, 84 (7). pp. 1920-1935.

Ackerman, J.L., and Bellwood, D.R. (2002) Comparative efficiency of clove oil and rotenone for sampling tropical reef fish assemblages. Journal of Fish Biology, 60 (4). pp. 893-901.

Adams, S., and Williams, A.J. (2001) A preliminary test of the transitional growth spurt hypothesis using the protogynous coral trout Plectropomus maculatus. Journal of Fish Biology, 59 (1). pp. 183-185.

Ackerman, John L., and Bellwood, David R. (2000) Reef fish assemblages: a re-evaluation using enclosed rotenone stations. Marine Ecology-Progress Series, 206. pp. 227-237.

Ayre, David J., and Hughes, Terence P. (2000) Genotypic diversity and gene flow in brooding and spawning corals along the Great Barrier Reef, Australia. Evolution, 54 (5). pp. 1590-1605.

Anthony, Kenneth R.N., and Fabricius, Katharina E. (2000) Shifting roles of heterotrophy and autotrophy in coral energetics under varying turbidity. Journal of Experimental Marine Biology and Ecology, 252 (2). pp. 221-253.

Adams, S., Mapstone, B.D., Russ, G.R., and Davies, C.R. (2000) Geographic variation in the sex ratio, sex specific size, and age structure of Plectropomus leopardus (Serranidae) between reefs open and closed to fishing on the Great Barrier Reef. Canadian Journal of Fisheries and Aquatic Sciences, 57 (7). pp. 1448-1458.

Anthony, K.R.N. (2000) Enhanced particle-feeding capacity of corals on turbid reefs (Great Barrier Reef, Australia). Coral Reefs, 19 (1). pp. 59-67.

Arvedlund, Michael, Bundgaard, Ingvar, and Nielsen, Lis E. (2000) Host imprinting in anemonefishes (Pisces: Pomacentridae): does it dictate spawning site preferences? Environmental Biology of Fishes, 58 (2). pp. 203-213.

Aragones, Lemnuel, and Marsh, Helene (2000) Impact of dugong grazing and turtle cropping on tropical seagrass communities. Pacific Conservation Biology, 5 (4). pp. 277-288.

Arvedlund, Michael, Larsen, Kim, and Winsor, Heather (2000) The embryonic development of the olfactory system in Amphiprion melanopus (Perciformes: Pomacentridae) related to the host imprinting hypothesis. Journal of the Marine Biological Association of the United Kingdom, 80 (6). pp. 1103-1109.

Anthony, Kenneth R.N. (1999) A tank system for studying benthic aquatic organisms at predictable levels of turbidity and sedimentation: case study examining coral growth. Limnology and Oceanography, 44 (6). pp. 1415-1422.

Anthony, Kenneth R.N. (1999) Coral suspension feeding on fine particulate matter. Journal of Experimental Marine Biology and Ecology, 232 (1). pp. 85-106.

Arvedlund, Michael, McCormick, Mark I., Fautin, Daphne G., and Bildsøe, Mogens (1999) Host recognition and possible imprinting in the anemonefish Amphiprion melanopus (Pisces: Pomacentridae). Marine Ecology Progress Series, 188. pp. 207-218.

Anthony, Kenneth Roald Nies (1999) Sediment: stress factor or food source for reef corals. PhD thesis, James Cook University.

Ayre, David J., Hughes, Terence P., and Standish, Rachel J. (1997) Genetic differentiation, reproductive mode, and gene flow in the brooding coral pocillopora damicornis along the Great Barrier Reef, Australia. Marine Ecology Progress Series, 159. pp. 175-187.

Aragones, Lemnuel V. (1996) Dugongs and green turtles: grazers in the tropical seagrass ecosystem. PhD thesis, James Cook University of North Queensland.

B

Bradley, Michael (2019) Context dependence in the habitat relationships of coastal and marine fishes. PhD thesis, James Cook University.

Bierwagen, Stacy L. (2019) Functional roles of reef sharks on the Great Barrier Reef. PhD thesis, James Cook University.

Barbosa Martins, Ana Paula (2019) Refining the ecological role of stingrays in coral reef ecosystems. PhD thesis, James Cook University.

Brandl, Simon J., Morais, Renato A., Casey, Jordan M., Parravicini, Valeriano, Tornabene, Luke, Goatley, Christopher H.R., Côté, Isabelle M., Baldwin, Carole C., Schiettekatte, Nina M.D., and Bellwood, David R. (2019) Response to comment on "Demographic dynamics of the smallest marine vertebrates fuel coral reef ecosystem functioning". Science, 366 (6472). eaaz1301.

Burrows, Damien, Purandare, Jemma, Bay, Line, Cook, Nathan, Koopman, Danielle, Long, Suzanne, Lundgren, Petra, Mead, David, Morris, Sheriden, Newlands, Maxine, Roth, Christian, Wachenfeld, David, Smith, Adam K., and McLeod, Ian M. (2019) Symposium report: Great Barrier Reef restoration symposium, 2018. Ecological Management and Restoration, 20 (2). pp. 175-178.

Boström‐Einarsson, Lisa, Ceccarelli, Daniela, Babcock, Russell C., Bayraktarov, Elisa, Cook, Nathan, Harrison, Peter, Hein, Margaux, Shaver, Elizabeth, Smith, Adam, Stewart-Sinclair, Phoebe J., Vardi, Tali, and McLeod, Ian M. (2018) Coral restoration in a changing world - a global synthesis of methods and techniques. Report. Reef and Rainforest Research Centre Ltd, Cairns.

Bostrom Einarsson, Lisa (2018) Dead enough? The thorny issue of culling crown-of-thorns starfish using vinegar injections. A reply to Dumas et al. The chaotic history of using vinegar injections to control Acanthaster spp. populations, Ocean & Coastal management, 2018, Volume 165, Page number 434–435. Ocean & Coastal Management, 165. pp. 436-437.

Buelow, Christina Amy (2017) Integrated assessment of ecosystem connectivity and functioning: coastal forest avifauna of northeast Australia. PhD thesis, James Cook University.

Brandl, Simon Johannes (2016) Functional niche partitioning in herbivorous coral reef fishes. PhD thesis, James Cook University.

Boström Einarsson, Lisa (2016) Habitat degradation and competition for resources in coral reef fishes. PhD thesis, James Cook University.

Barros, Breno, Sakai, Yoichi, Pereira, Pedro H.C., Gasset, Eric, Buchet, Vincent, Maamaatuaiahutapu, Moana, Ready, Jonathan S., Oliveira, Yrlan, Giarrizzo, Tommaso, and Vallinoto, Marcelo (2015) Comparative allometric growth of the mimetic ephippid reef fishes Chaetodipterus faber and Platax orbicularis. PLoS ONE, 10 (12). e0143838.

Baker, Linda, Edwards, Will, and Pike, David A. (2015) Sea turtle rehabilitation success increases with body size and differs among species. Endangered Species Research, 29 (1). pp. 13-21.

Bellwood, David R., Goatley, Christopher H.R., Bellwood, Orpha, Delbarre, Daniel J., and Friedman, Matt (2015) The rise of jaw protrusion in spiny-rayed fishes closes the gap on elusive prey. Current Biology, 25 (20). pp. 2696-2700.

Brandl, Simon J., and Bellwood, David R. (2015) Coordinated vigilance provides evidence for direct reciprocity in coral reef fishes. Scientific Reports, 5. 14556.

Bouwmeester, Jessica, Benzoni, Francesca, Baird, Andrew H., and Berumen, Michael L. (2015) Cyphastrea kausti sp n. (Cnidaria, Anthozoa, Scleractinia), a new species of reef coral from the Red Sea. ZooKeys, 496. pp. 1-13.

Boaden, A.E., and Kingsford, M.J. (2015) Predators drive community structure in coral reef fish assemblages. Ecosphere, 6 (4). 46. pp. 1-33.

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Bell, Ian (2013) Algivory in hawksbill turtles: Eretmochelys imbricata food selection within a foraging area on the Northern Great Barrier Reef. Marine Ecology, 34 (1). pp. 43-55.

Bauman, Andrew G., Pratchett, Morgan S., Baird, Andrew H., Riegl, Bernhard, Heron, Scott F., and Feary, David A. (2013) Variation in the size structure of corals is related to environmental extremes in the Persian Gulf. Marine Environmental Research, 84. pp. 43-50.

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Baird, A.H., Pratchett, M.S., Hoey, A.S., Herdiana, Y., and Campbell, S.J. (2013) Acanthaster planci is a major cause of coral mortality in Indonesia. Coral Reefs, 32 (3). pp. 803-812.

Bender, Mariana G., Pie, Marcio R., Rezende, Enrico L., Mouillot, David, and Floeter, Sergio R. (2013) Biogeographic, historical and environmental influences on the taxonomic and functional structure of Atlantic reef fish assemblages. Global Ecology and Biogeography, 22 (11). pp. 1173-1182.

Beck, Emadch (2013) Comparative phylogeography of four Indo-Pacific scarine labrids: an insight into the evolutionary patterns of reef fish. PhD thesis, James Cook University.

Baird, Andrew H., Nakamura, Takashi, and Yamasaki, Hideo (2013) Evolution of thermal thresholds: can corals adapt to projected rates of change in sea surface temperatures? Galaxea, Journal of Coral Reef Studies, 15 (Special Issue). pp. 366-372.

Battaglia, Pietro, Andaloro, Franco, Consoli, Pierpaolo, Esposito, Valentina, Malara, Danilo, Musolino, Simona, Pedà, Cristina, and Romeo, Teresa (2013) Feeding habits of the Atlantic bluefin tuna, Thunnus thynnus (L. 1758), in the central Mediterranean Sea (Strait of Messina). Helgoland Marine Research, 67 (1). pp. 97-107.

Bradbury, Dominique (2013) Inter- and intra- specific variation in bleaching susceptibility among scleractinian corals. PhD thesis, James Cook University.

Barnett, Adam, Yick, Jonah L., Abrantes, Kátya G., and Awruch, Cynthia A. (2013) Trophic ecology of an abundant predator and its relationship with fisheries. Marine Ecology Progress Series, 494. pp. 241-248.

Bauman, Andrew Geoffrey (2013) The ecology and dynamics of coral reef communities in an extreme reef environment: the southern Persian Gulf. PhD thesis, James Cook University.

Berumen, M.L., Hoey, A.S., Bass, W.H., Bouwmeester, J., Catania, D., Cochran, J.E.M., Khalil, M.T., Miyake, S., Mughal, M.R., Spaet, J.L.Y., and Saenz-Agudelo, P. (2013) The status of coral reef ecology research in the Red Sea. Coral Reefs, 32 (3). pp. 737-748.

Basset, Alberto, Barbone, Enrico, Elliott, Michael, Li, Bai-Lian, Jorgensen, Sven Eric, Lucena-Moya, Paloma, Pardo, Isabel, and Mouillot, David (2013) A unifying approach to understanding transitional waters: fundamental properties emerging from ecotone ecosystems. Estuarine, Coastal and Shelf Science , 132. pp. 5-16.

Baird, Andrew, Sommer, Brigitte, and Madin, Joshua (2012) Pole-ward range expansion of Acropora spp. along the east coast of Australia. Coral Reefs, 31 (4). p. 1063.

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Bellwood, David R., Baird, Andrew H., Depczynski, Martial, González-Cabello, Alonso, Hoey, Andrew S., Lefevre, Carine D., and Tanner, Jennifer K. (2012) Coral recovery may not herald the return of fishes on damaged coral reefs. Oecologia, 170 (2). 1- 7.

Boaden, A.E., and Kingsford, M.J. (2012) Diel behaviour and trophic ecology of Scolopsis bilineatus (Nemipteridae). Coral Reefs, 31 (3). pp. 871-883.

Berkstrom, Charlotte, Jones, Geoffrey P., McCormick, Mark I., and Srinivasan, Maya (2012) Ecological versatility and its importance for the distribution and abundance of coral reef wrasses. Marine Ecology Progress Series, 461. pp. 151-163.

Barnett, A., Braccini, J.M., Awruch, C.A., and Ebert, D.A. (2012) An overview on the role of Hexanchiformes in marine ecosystems: biology, ecology and conservation status of a primitive order of modern sharks. Journal of Fish Biology, 80 (5). pp. 966-990.

Berumen, M.L., Trip, E.D.L., Pratchett, M.S., and Choat, J.H. (2012) Differences in demographic traits of four butterflyfish species between two reefs of the Great Barrier Reef separated by 1,200 km. Coral Reefs, 31 (1). pp. 169-177.

Bonaldo, R.M., Welsh, J.Q., and Bellwood, D.R. (2012) Spatial and temporal variation in coral predation by parrotfishes on the GBR: evidence from an inshore reef. Coral Reefs, 31 (1). pp. 263-272.

Bonin, M.C. (2012) Specializing on vulnerable habitat: Acropora selectivity among damselfish recruits and the risk of bleaching-induced habitat loss. Coral Reefs, 31 (1). pp. 287-297.

Baird, Andrew H., Campbell, Stuart J., Fadli, Nur, Hoey, Andrew S., and Rudi, Edi (2012) The shallow water hard corals of Pulau Weh, Aceh Province, Indonesia. Aquaculture, Aquarium, Conservation and Legislation, 5 (1). pp. 23-28.

Bell, Ian, and Pike, David A. (2012) Somatic growth rates of hawksbill turtles Eretmochelys imbricata in a northern Great Barrier Reef foraging area. Marine Ecology Progress Series, 446. pp. 275-283.

Berumen, Michael L., Almany, Glenn R., Planes, Serge, Jones, Geoffrey P., Saenz-Agudelo, Pablo, and Thorrold, Simon R. (2012) Persistence of self-recruitment and patterns of larval connectivity in a marine protected area network. Ecology and Evolution, 2 (2). pp. 444-452.

Bannister, R.J., Battershill, C.N., and de Nys, R. (2012) Suspended sediment grain size and mineralogy across the continental shelf of the Great Barrier Reef: impacts on the physiology of a coral reef sponge. Continental Shelf Research, 32. pp. 86-95.

Beeden, Roger, Maynard, Jeffrey A., Marshall, Paul A., Heron, Scott F., and Willis, Bette L. (2012) A framework for responding to coral disease outbreaks that facilitates adaptive management. Environmental Management, 49 (1). pp. 1-13.

Barnes, Lachlan, Bellwood, David R., Sheaves, Marcus, and Tanner, Jennifer K. (2012) The use of clear-water non-estuarine mangroves by reef fishes on the Great Barrier Reef. Marine Biology, 159 (1). pp. 211-220.

Bridge, T., Scott, A., and Steinberg, D. (2012) Abundance and diversity of anemonefishes and their host sea anemones at two mesophotic sites on the Great Barrier Reef, Australia. Coral Reefs, 31 (4). pp. 1057-1062.

Beltran, Victor H., Dunlap, Walter C., and Long, Paul F. (2012) Comparison of the photosynthetic bleaching response of four coral species common to the central GBR. In: Proceedings of the 12th International Coral Reef Symposium. 9A_3. pp. 1-6. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Busilacchi, S., Williams, A.J., Russ, G.R., and Begg, G.A. (2012) Complexity of applying minimum legal sizes (MLS) of retention in an indigenous coral reef fishery. Fisheries Management and Ecology.

Baird, Andrew H., Emslie, Michael J., and Lewis, Andrew R. (2012) Extended periods of coral recruitment on the Great Barrier Reef. In: Proceedings of the 12th International Coral Reef Symposium. 12A_1. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Bell, Ian Philip (2012) The Hawksbill turtle, Eretmochelys imbricate, (Linnaeus 1766): ecological insights of a resident population in the Northern Great Barrier Reef, Queensland, Australia. PhD thesis, James Cook University.

Briffa, Mark, de la Haye, Kate, and Munday, Philip L. (2012) High CO2 and marine animal behaviour: potential mechanisms and ecological consequences. Marine Pollution Bulletin, 64 (8). pp. 1519-1528.

Bell, Ian, Schwarzkopf, Lin, and Manicom, Carryn (2012) High survivorship of an annually decreasing aggregation of hawksbill turtles, Eretmochelys imbricata, found foraging in the northern Great Barrier Reef. Aquatic Conservation: marine and freshwater ecosystems , 22 (5). pp. 673-682.

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Brewer, Thomas D., Cinner, Joshua E., Fisher, Rebecca, Green, Alison, and Wilson, Shaun K. (2012) Market access, population density, and socioeconomic development explain diversity and functional group biomass of coral reef fish assemblages. Global Environmental Change, 22 (2). pp. 399-406.

Bruggemann, J. Henrich, Rodier, Martine, Guillaume, Mireille M.M., Andréfouët, Serge, Arfi, Robert, Cinner, Joshua E., Pichon, Michel, Ramahatatra, Frederic, Rasoamanendrika, Faravavy, Zinke, Jens, and McClanahan, Tim R. (2012) Wicked social–ecological problems forcing unprecedented change on the latitudinal margins of coral reefs: the case of southwest Madagascar. Ecology and Society, 17 (4). 47. pp. 1-17.

Benzoni, Francesca, Pichon, Michel, Dutrieux, Eric, Chaîneau, Claude-Henri, Abdulaziz, Malek, and Al-Thary, Ibrahim (2012) The scleractinian fauna of Yemen: diversity and species distribution patterns. In: Proceedings of the 12th International Coral Reef Symposium. 15A_1. pp. 1-6. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Bell, Ian, and Ariel, Ellen (2011) Dietary shift in green turtles. Seagrass-Watch News, 44. pp. 2-5.

Bongaerts, Pim, Sampayo, Eugenia M., Bridge, Thomas C.L., Ridgway, Tyrone, Vermeulen, Francisca, Englebert, Norbert, Webster, Jody M., and Hoegh-Guldberg, Ove (2011) Symbiodinium diversity in mesophotic coral communities on the Great Barrier Reef: a first assessment. Marine Ecology Progress Series, 439. pp. 117-126.

Brooker, R.M., Munday, P.L., and Jones, G.P. (2011) Coral obligate filefish masquerades as branching coral. Coral Reefs, 30 (3). p. 803.

Ban, Natalie, Adams, Vanessa, Almany, Glenn, Ban, Stephen, Cinner, Joshua, McCook, Laurence, Mills, Morena, Pressey, Bob, and White, Alan (2011) Designing, implementing and managing marine protected areas: emerging trends and opportunities for coral reef nations. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 21-31.

Beer, Nicola A., Wing, Stephen R., and Hu, Yi (2011) Physical versus biological control of element incorporation into biogenic carbonate: an in situ experiment in a New Zealand fjord. Marine Ecology Progress Series, 433. pp. 289-301.

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Bauman, A.G., Baird, A.H., and Cavalcante, G.H. (2011) Coral reproduction in the world's warmest reefs: southern Persian Gulf (Dubai, United Arab Emirates). Coral Reefs, 30 (2). pp. 405-413.

Bellwood, D.R., and Choat, J.H. (2011) Dangerous demographics: the lack of juvenile humphead parrotfishes Bolbometopon muricatum on the Great Barrier Reef. Coral Reefs, 30 (2). pp. 549-554.

Bonaldo, R.M., and Bellwood, D.R. (2011) Spatial variation in the effects of grazing on epilithic algal turfs on the Great Barrier Reef, Australia. Coral Reefs, 30 (2). pp. 381-390.

Barnett, Adam, Abrantes, Kátya G., Stevens, John D., and Semmens, Jayson M. (2011) Site fidelity and sex-specific migration in a mobile apex predator: implications for conservation and ecosystem dynamics. Animal Behaviour, 81 (5). pp. 1039-1048.

Beger, Maria, Babcock, Russ, Booth, David J., Bucher, Daniel, Condie, Scott A., Creese, Bob, Cvitanovic, Christopher, Dalton , Steve J., Harrison, Peter, Hoey, Andrew, Jordan, Alan, Loder, Jennifer, Malcolm, Hamish, Purcell, Steven W., Roelfsma, Chris, Sachs, Patrick , Smith, Stephen D.A., Sommer, Brigitte, Stuart-Smith, Rick, Thomson, Damian, Wallace, Carden C., Zann, Maria, and Pandolfi, John M. (2011) Research challenges to improve the management and conservation of subtropical reefs to tackle climate change threats. Ecological Management and Restoration, 12 (1). e7-e10.

Bennett, S., and Bellwood, D.R. (2011) Latitudinal variation in macroalgal consumption by fishes on the Great Barrier Reef. Marine Ecology Progress Series, 426. pp. 241-252.

Bonaldo, R.M., and Bellwood, D.R. (2011) Parrotfish predation on massive Porites on the Great Barrier Reef. Coral Reefs, 30 (1). pp. 259-269.

Bridge, T.C.L., Done, T.J., Beaman, R.J., Friedman, A., Williams, S.B., Pizarro, O., and Webster, J.M. (2011) Topography, substratum and benthic macrofaunal relationships on a tropical mesophotic shelf margin, central Great Barrier Reef, Australia. Coral Reefs, 30 (1). pp. 143-153.

Bonaldo, R.M., Krajewski, P.J., and Bellwood, D.R. (2011) Relative impact of parrotfish grazing scars on massive Porites corals at Lizard Island, Great Barrier Reef. Marine Ecology Progress Series, 423. pp. 223-233.

Baird, A.H., Blakeway, D.R., Hurley, T.J., and Stoddart , J.A. (2011) Seasonality of coral reproduction in the Dampier Archipelago, northern Western Australia. Marine Biology, 158 (2). pp. 275-285.

Burt, John A., Feary, David A., Bauman, Andrew G., Usseglio, Paolo, Cavalcante, Georgenes H., and Sale, Peter F. (2011) Biogeographic patterns of reef fish community structure in the northeastern Arabian Peninsula. ICES Journal of Marine Science, 68 (9). pp. 1875-1883.

Bonin, Mary C., Almany, Glenn R., and Jones, Geoffrey P. (2011) Contrasting effects of habitat loss and fragmentation on coral-associated reef fishes. Ecology, 92 (7). pp. 1503-1512.

Bouwmeester, Jessica, Berumen, Michael, and Baird, Andrew (2011) Daytime broadcast spawning of Pocillopora verrucosa on coral reefs of the central Red Sea. Galaxea, Journal of Coral Reef Studies, 13. pp. 23-24.

Baker, Ronald, and Minello, Thomas J. (2011) Trade-offs between gear selectivity and logistics when sampling nekton from shallow open water habitats: a gear comparison study. Gulf and Caribbean Research, 23. pp. 37-48.

Bridge, Thomas C.L., Done, Terrence J., Friedman, Ariell, Beaman, Robin J., Williams, Stefan B., Pizzaro, Oscar, and Webster, Jody M. (2011) Variability in mesophotic coral reef communities along the Great Barrier Reef, Australia. Marine Ecology Progress Series, 428. pp. 63-75.

Browne, Nicola (2011) A carbonate and terrigenous sediment budget for inshore turbid reefs on the Great Barrier Reef. PhD thesis, James Cook University.

Berumen, M. L, Walsh, H.J., Raventos, N., Planes, S., Jones, G.P., Starczak, V., and Thorrold, S.R. (2010) Otolith geochemistry does not reflect dispersal history of clownfish larvae. Coral Reefs, 29 (4). pp. 883-891.

Barbosa, M., Dornelas, M., and Magurran, A.E. (2010) Effects of polyandry on male phenotypic diversity. Journal of Evolutionary Biology, 23 (11). pp. 2442-2452.

Babcock, R.C., Shears, N.T., Alcala, A.C., Barrett, N.S., Edgar, G.J., Lafferty, K.D., McClanahan, T.R., and Russ, G.R. (2010) Decadal trends in marine reserves reveal differential rates of change in direct and indirect effects. Proceedings of the National Academy of Sciences of the United States of America, 107 (43). pp. 18256-18261.

Burt, John, Feary, David, Usseglio, Paolo, Bauman, Andrew, and Sale, Peter F. (2010) The influence of wave exposure on coral community development on man-made breakwater reefs, with a comparison to a natural reef. Bulletin of Marine Science, 86 (4). pp. 839-859.

Barnett, Adam, Redd, Kevin S., Frusher, Stewart D., Stevens, John D., and Semmens, Jayson M. (2010) Non-lethal method to obtain stomach samples from a large marine predator and the use of DNA analysis to improve dietary information. Journal of Experimental Marine Biology and Ecology, 393 (1-2). pp. 188-192.

Baker, Ronald, and Minello, Thomas J. (2010) Growth and mortality of juvenile white shrimp Litopenaeus setiferus in a marsh pond. Marine Ecology Progress Series, 413. pp. 95-104.

Baird, Andrew H., Kospartov, Marie C., and Purcell, Steven (2010) Reproductive synchrony in Acropora assemblages on reefs of New Caledonia. Pacific Science, 64 (3). pp. 405-412.

Bennett, S., Vergés, A., and Bellwood, D.R. (2010) Branching coral as a macroalgal refuge in a marginal coral reef system. Coral Reefs, 29 (2). pp. 471-480.

Bannister, R.J., Battershill, C.N., and de Nys, R. (2010) Demographic variability and long-term change in a coral reef sponge along a cross-shelf gradient of the Great Barrier Reef. Marine and Freshwater Research, 61 (4). pp. 389-396.

Barnett, Adam, Stevens, John D., and Yick, Jonah L. (2010) The occurrence of the bluntnose sixgill shark Hexanchus griseus (Hexanchiformes: Hexanchidae) in a river in south-eastern Tasmania. Marine Biodiversity Records, 3. e24. pp. 1-3.

Barba, Jacquelyn (2010) Demography of parrotfish: age, size and reproductive variables. Masters (Research) thesis, James Cook University.

Bondarenko, Olga, Kininmonth, Stuart, and Kingsford, Michael (2010) Deployment of wireless sensor network to study oceanography of coral reefs. International Journal on Advances in Networks and Services, 3 (1 and 2). pp. 92-102.

Bhagooli, R, Baird, Andrew, and Ralph, Peter (2010) Does the coral host protect its algal symbionts from heat and light stresses? In: Proceedings of the 11th International Coral Reef Symposium. pp. 113-117. From: 11th International Coral Reef Symposium, 07 - 11 July 2008, Fort Lauderdale, FL, USA.

Baird, A.H., Bhagooli, R., Nonaka, M., Yakovleva, I., Yamamoto, H.H., Hidaka, M., and Yamasaki, H. (2010) Environmental controls on the establishment and development of algal symbiosis in corals. In: Proceedings of the 11th International Coral Reef Symposium. pp. 108-112. From: 11th International Coral Reef Symposium, 07 - 11 July 2008, Fort Lauderdale, FL, USA.

Braccini, J. Matias, Troynikov, Vladimir S., Walker, Terence I., Mollet, Henry F., Ebert, David A., Barnett, Adam, and Kirby, Nicholas (2010) Incorporating heterogeneity into growth analyses of wild and captive broadnose sevengill sharks Notorynchus cepedianus. Aquatic Biology, 9 (2). pp. 131-138.

Bonin, Mary Catherine (2010) Patterns of microhabitat specialization and the consequences of coral degradation for coral-associated reef fishes. PhD thesis, James Cook University.

Barnett, A., Stevens, J.D., Frusher, S.D., and Semmens, J.M. (2010) Seasonal occurrence and population structure of the broadnose sevengill shark (Notorynchus cepedianus) in coastal habitats of south east Tasmania. Journal of Fish Biology, 77. pp. 1688-1701.

Bonaldo, Roberta Martini (2010) The ecosystem role of parrotfishes on coral reefs. PhD thesis, James Cook University.

Baker, Ron, and Sheaves, Marcus (2009) Overlooked small and juvenile piscivores dominate shallow-water estuarine "refuges" in tropical Australia. Estuarine, Coastal and Shelf Science , 85 (4). pp. 618-626.

Bartlett, C.Y., Manua, C., Cinner, J., Sutton, S., Jimmy, R., South, R., Nilsson, J., and Raina, J. (2009) Comparison of outcomes of permanently closed and periodically harvested coral reef reserves. Conservation Biology, 23 (6). pp. 1475-1484.

Berumen, Michael L., and Almany, Glenn R (2009) External tagging does not affect the feeding behavior of a coral reef fish, Chaetodon vagabundus (Pisces: Chaetodontidae). Environmental Biology of Fishes, 86 (4). pp. 447-450.

Baird, Andrew H., Guest, James R., and Willis, Bette L. (2009) Systematic and biogeographical patterns in the reproductive biology of scleractinian corals. Annual Review of Ecology, Evolution, and Systematics, 40. pp. 551-571.

Bonin, Mary C., Munday, Philip L., McCormick, Mark I., Srinivasan, Maya, and Jones, Geoffrey P. (2009) Coral-dwelling fishes resistant to bleaching but not to mortality of host corals. Marine Ecology Progress Series, 394. pp. 215-222.

Bellwood, David R., and Meyer, Christopher P. (2009) Endemism and evolution in the Coral Triangle: a call for clarity. Journal of Biogeography, 36 (10). pp. 2010-2012.

Baird, Andrew H., Bhalla, Ravinder S. , Kerr, Alexander M., Pelkey, Neil W. , and Srinivas, V. (2009) Do mangroves provide an effective barrier to storm surges? Proceedings of the National Academy of Sciences of the United States of America, 106 (40). E111-E111.

Brown, D.P., Basch, L., Barshis, D., Forsman, Z., Fenner, D., and Goldberg, J. (2009) American Samoa's island of giants: massive Porites colonies at Ta'u island. Coral Reefs, 28 (3). p. 735.

Baker, Ron, and Sheaves, Marcus (2009) Refugees or ravenous predators: detecting predation on new recruits to tropical estuarine nurseries. Wetlands Ecology and Management, 17 (4). pp. 317-330.

Brierley, Andrew S., and Kingsford, Michael J. (2009) Impacts of climate change on marine organisms and ecosystems. Current Biology, 19 (14). R602-R614.

Bay, Line K., Ulstrup, Karin E., Nielsen, H. Bjorn, Jarmer, Hanne, Goffard, Nicolas, Willis, Bette L., Miller, David J., and van Oppen, Madeleine J.H. (2009) Microarray analysis reveals transcriptional plasticity in the reef building coral Acropora millepora. Molecular Ecology, 18 (14). pp. 3062-3075.

Bonaldo, Roberta Martini, and Bellwood, David R. (2009) Dynamics of parrotfish grazing scars. Marine Biology, 156 (4). pp. 771-777.

Bonin, M.C., Srinivasan, M., Almany, G.R., and Jones, G.P. (2009) Interactive effects of interspecifc competition and microhabitat on early post-settlement survival in a coral reef fish. Coral Reefs, 28 (1). pp. 265-274.

Barneche, Diego R., Floeter, S.R., Ceccarelli, D.M., Frensel, D.M.B., Dinslaken, D.F., Mario, H.F.S., and Ferreira, C.E.L. (2009) Feeding macroecology of territorial damselfishes (Perciformes: Pomacentridae). Marine Biology, 156 (3). pp. 289-299.

Baumgartner, Finn A., Motti, Cherie, de Nys, Rocky, and Paul, Nicholas A. (2009) Feeding preferences and host associations of specialist marine herbivores align with quantitative variation in seaweed secondary metabolites. Marine Ecology Progress Series, 396. pp. 1-12.

Baird, Andrew, Birrell, Chico L., Hughes, Terence, McDonald, Abbi, Nojima, Satoshi, Page, Cathie A., Pratchett, Morgan S., and Yamasaki, Hideo (2009) Latitudinal variation in reproductive synchrony in Acropora assemblages: Japan vs. Australia. Galaxea, Journal of Coral Reef Studies, 11 (2). pp. 101-108.

Baird, A.H., and Guest , J.R. (2009) Spawning synchrony in scleractinian corals: comment on Mangubhai & Harrison (2008). Marine Ecology Progress Series, 374. pp. 301-304.

Belmaker, Jonathan, Ziv, Yaron, Shashar, Nadav, and Connolly, Sean R. (2008) Regional variation in the hierarchical partitioning of diversity in coral-dwelling fishes. Ecology, 89 (10). pp. 2829-2840.

Baird, Andrew, and Maynard, Jeffrey A. (2008) Coral adaptation in the face of climate change. Science, 320 (5874). pp. 315-316.

Berumen, Michael L, and Pratchett, Morgan S (2008) Trade-offs associated with dietary specialization in corallivorous butterflyfishes (Chaetodontidae: Chaetodon). Behavioral Ecology and Sociobiology, 62 (6). pp. 989-994.

Boitani, Luigi, Cowling, Richard M., Dublin, Holly T., Mace, Georgina M., Parrish, Jeff, Possingham, Hugh P., Pressey, Robert L., Rondinini, Carlo, and Wilson, Kerrie A. (2008) Change the IUCN protected area categories to reflect biodiversity outcomes. PLoS Biology, 6 (3). pp. 436-438.

Bourne, David G., Boyett, Holly V., Henderson, Meegan E., Muirhead, Andrew, and Willis, Bette L. (2008) Identification of a ciliate (Oligohymenophorea: Scuticociliatia) associated with brown band disease on corals of the Great Barrier Reef. Applied and Environmental Microbiology, 74 (3). pp. 883-888.

Berger, Uta, Rivera-Monroy, Victor H., Doyle, Thomas W., Dahdouh-Guebas, Farid, Duke, Norman C., Fontalvo-Herazo, Martha L., Hildenbrandt, Hanno, Koedam, Nico, Mehlig, Ulf, Piou, Cyril, and Twilley, Robert R. (2008) Advances and limitations of individual-based models to analyze and predict dynamics of mangrove forests: a review. Aquatic Botany, 89 (2). pp. 260-274.

Birrell, Chico L., McCook, Laurence J., Willis, Bette L., and Harrington, Lindsay (2008) Chemical effects of macroalgae on larval settlement of the broadcast spawning coral Acropora millepora. Marine Ecology Progress Series, 362. pp. 129-137.

Birrell, Chico L., McCook, Laurence J., Willis, Bette L., and Diaz-Pulido, Guillermo A. (2008) Effects of benthic algae on the replenishment of corals and the implications for the resilience of coral reefs. Oceanography and Marine Biology: an annual review, 46. pp. 25-63.

Baird, Andrew H., and Kerr, Alexander M. (2008) Landscape analysis and tsunami damage in Aceh: comment on Iverson and Prasad (2007). Landscape Ecology, 23 (1). pp. 3-5.

Bouillon, Steven, Borges, Alberto V., Castañeda-Moya, Edward, Diele, Karen, Dittmar, Thorsten, Duke, Norman C., Kristensen, Erik, Lee, Shing Y., Marchand, Cyril, Middelburg, Jack J., Rivera-Monroy, Victor H., Smith, Thomas, and Twilley, Robert R. (2008) Mangrove production and carbon sinks: a revision of global budget estimates. Global Biogeochemical Cycles, 22 (2). GB2013.

Bellwood, David R., and Fulton, Christopher J. (2008) Sediment-mediated suppression of herbivory on coral reefs: decreasing resilience to rising sea levels and climate change. Limnology and Oceanography, 53 (6). pp. 2695-2701.

Bannister, Raymond (2008) The ecology and feeding biology of the sponge Rhopaloeides odorabile. PhD thesis, James Cook University.

Baker, Ron, and Sheaves, Marcus (2007) Shallow-water refuge paradigm: conflicting evidence from tethering experiments in a tropical estuary. Marine Ecology Progress Series, 349. pp. 13-22.

Baird, Andrew H., Cumbo, Vivian R., Leggat, Bill, and Rodriguez-Lanetty, Mauricio (2007) Fidelity and flexibility in coral symbioses. Marine Ecology Progress Series, 347. pp. 307-309.

Bité, Juanita S., Campbell, Stuart J., McKenzie, Len J., and Coles, Robert G. (2007) Chlorophyll fluorescence measures of seagrasses Halophila ovalis and Zostera capricorni reveal differences in response to experimental shading. Marine Biology, 152 (2). pp. 405-414.

Burgess, Scott C., Kingsford, Michael J., and Black, Kerry P. (2007) Influence of tidal eddies and wind on the distribution of presettlement fishes around One Tree Island, Great Barrier Reef. Marine Ecology Progress Series, 341. pp. 233-242.

Baird, Andrew H., and Kerr, Alexander M. (2007) The dangerous myth of tsunami greenbelts: Response to Stone 2006. Science. p. 1.

Bondarenko, Olga, Kininmonth, Stuart, and Kingsford, Mike (2007) Coral reef sensor network deployment for collecting real time 3-D temperature data with correlation to plankton assemblages. In: Proceedings of International Conference on Sensor Technologies and Applications. pp. 204-209. From: SENSORCOMM 2007: International Conference on Sensor Technologies and Applications, 14-20 October 2007, Valencia, Spain.

Bishop, Melanie J., Kelaher, Brendan P., Alquezar, Ralph, York, Paul H., Ralph, Peter J., and Skilbeck, C. Greg (2007) Trophic cul-de-sac, Pyrazus ebeninus, limits trophic transfer through an estuarine detritus-based food web. Oikos, 116 (3). pp. 427-438.

Bondarenko, Olga, Kininmonth, Stuart, and Kingsford, Michael (2007) Underwater sensor networks, oceanography and plankton assemblages. In: Proceedings of the 2007 International Conference on Intelligent Sensors, Sensor Networks and Information Processing . pp. 657-662. From: International Conference on Intelligent Sensors, Sensor Networks and Information Processing (ISSNIP) 2007, 3-6 December 2007, Melbourne, Vic, Australia.

Balston, Jacqueline Marie (2007) An examination of the impacts of climate variability and climate change on the wild barramundi (Lates calcarifer): a tropical estuarine fishery of north-eastern Queensland, Australia. PhD thesis, James Cook University.

Berumen, Michael L., and Pratchett, Morgan S. (2006) Recovery without resilience: persistent disturbance and long-term shifts in the structure of fish and coral communities at Tiahura Reef, Moorea. Coral Reefs, 25 (4). pp. 647-653.

Baker, Ronald, and Sheaves, Marcus (2006) Visual surveys reveal high densities of large piscivores in shallow estuarine nurseries. Marine Ecology Progress Series, 323. pp. 75-82.

Bellwood, David R, Hoey, Andrew S, Ackerman, John L, and Depczynski, Martial (2006) Coral bleaching, reef fish community phase shifts and the resilience of coral reefs. Global Change Biology, 12 (9). pp. 1587-1594.

Baird, Andrew (2006) Myth of green belts. Samudra Report, 44. pp. 14-19.

Benzie, J.A.H., and Smith-Keune, C. (2006) Microsatellite variation in Australian and Indonesian pearl oyster Pinctada maxima populations. Marine Ecology Progress Series, 314. pp. 197-211.

Bay, L.K., Buechler, K., Gagliano, M., and Caley, M.J. (2006) Intraspecific variation in the pelagic larval duration of tropical reef fishes. Journal of Fish Biology, 68 (4). pp. 1206-1214.

Berkes, F., Hughes, T.P., Steneck, R.S., Wilson, J.A., Bellwood, D.R., Crona, B., Folke, C., Gunderson, L.H., Leslie, H.M., Norberg, J., Nyström, M., Olsson, P., Österblom, H., Scheffer, M., and Worm, B. (2006) Globalization, roving bandits, and marine resources. Science, 311 (5767). pp. 1557-1558.

Baird, A.H., Salih, A., and Trevor-Jones, A. (2006) Fluorescence census techniques for the early detection of coral recruits. Coral Reefs, 25 (1). pp. 73-76.

Blanco-Martin, Bernardo (2006) Dispersal of coral larvae: a modelling perspective on its determinants and implications. PhD thesis, James Cook University.

Berumen, Michael L., and Pratchett, Morgan S. (2006) Effects of resource availability on the competitive behaviour of butterflyfishes (Chaetodontidae). In: Proceedings of the International Coral Reef Symposium. pp. 644-650. From: 10th International Coral Reef Symposium, 28 June - 2 July 2004, Okinawa Convention Cente, Okinawa, Japan.

Berumen, Michael Lee (2006) Influence of resource availability on lifehistory traits in coral-feeding butterflyfishes (Pisces: Chaetodontidae). PhD thesis, James Cook University.

Bendell, Barry E. (2006) Interactions amongst invertebrates, epiphytes, and seagrasses in tropical intertidal meadows. PhD thesis, James Cook University.

Baker, Ronald (2006) Piscivory and the functioning of shallow tropical estuarine nursery grounds. PhD thesis, James Cook University.

Bishop, Melanie J., Kelaher, Brendan P., Smith, Marcus P. Lincoln, York, Paul H., and Booth, David J. (2006) Ratio-dependent response of a temperate Australian estuarine system to sustained nitrogen loading. Oecologia, 149 (4). pp. 701-708.

Boyett, Holly Virginia (2006) The ecology and microbiology of black band disease and brown band syndrome on the Great Barrier Reef. Masters (Research) thesis, James Cook University.

Baird, Andrew H., Campbell, Stuart J., Anggoro, Aji W., Ardiwijaya, Rizya L., Fadli, Nur, Herdiana, Yudi, Kartawijaya, Tasrif, Mahyiddin, Dodent, Mukminin, Ahmad, Pardede, Shinta T., Pratchett, Morgan S., Rudi, Edi, and Siregar, Achis M. (2005) Acehnese reefs in the wake of the Asian tsunami. Current Biology, 15 (21). pp. 1926-1930.

Bergenius, Mikaela A.J., McCormick, Mark I., Meekan, Mark G., and Robertson, D. Ross (2005) Environmental influences on larval duration, growth and magnitude of settlement of a coral reef fish. Marine Biology, 147 (2). pp. 291-300.

Baker, Ronald, and Sheaves, Marcus (2005) Redefining the piscivore assemblage of shallow estuarine nursery habitats. Marine Ecology Progress Series, 291. pp. 197-213.

Browne, J.G., and Kingsford, M.J. (2005) A commensal relationship between the scyphozoan medusae Catostylus mosaicus and the copepod Paramacrochiron maximum. Marine Biology, 146 (6). pp. 1157-1168.

Berumen, Michael L., Pratchett, Morgan S., and McCormick, Mark I. (2005) Within-reef differences in diet and body condition of coral-feeding butterflyfishes (Chaetodontidae). Marine Ecology Progress Series, 287. pp. 217-227.

Brodie, Jon, Fabricius, Katharina, De'ath, Glenn, and Okaji, Ken (2005) Are increased nutrient inputs responsible for more outbreaks of crown-of-thorns starfish? an appraisal of the evidence. Marine Pollution Bulletin, 51 (1-4). pp. 266-278.

Brown, G.D., Wong, H.-F., Hutchinson, N., Lee, S.-C., Chan, B.K.K., and Williams, G.A. (2005) Chemistry and biology of maculalactone A from the marine cyanobacterium Kyrtuthrix maculans. Phytochemistry reviews, 3 (3). pp. 381-400.

Bell, Alicia M., and Duke, Norman C. (2005) Effects of Photosystem II-inhibiting herbicides on mangroves: preliminary toxicology trials. Marine Pollution Bulletin, 51 (1-4). pp. 297-307.

Buechler, Karin (2005) An evaluation of geographic variation in the life history and behaviour of anemonefishes: A common-garden approach. PhD thesis, James Cook University.

Bastidas, C., Fabricius, K.E., and Willis, B.L. (2004) Demographic aspects of the soft coral Sinularia flexibilis leading to local dominance on coral reefs. Hydrobiologia, 530 (1-3). pp. 433-441.

Bellwood, David R., van Herwerden, Lynne, and Konow, Nicolai (2004) Evolution and biogeography of marine angelfishes (Pisces: Pomacanthidae). Molecular Phylogenetics and Evolution, 33 (1). pp. 140-155.

Bellwood, D.R., Hughes, T.P., Folke, C., and Nystrom, M. (2004) Confronting the coral reef crisis. Nature, 429 (6994). pp. 827-833.

Beukers-Stewart, B.D., and Jones, G.P. (2004) The influence of prey abundance on the feeding ecology of two piscivorous species of coral reef fish. Journal of Experimental Marine Biology and Ecology, 299 (2). pp. 155-184.

Baird, A.H., Babcock, R.C., and Mundy, C.P. (2003) Habitat selection by larvae influences the depth distribution of six common coral species. Marine Ecology Progress Series, 252. pp. 289-293.

Bean, K., Mapstone, B.D., Davies, C.R., Murchie, C.D., and Williams, A.J. (2003) Gonad development and evidence of protogyny in the red-throat emperor on the Great Barrier Reef. Journal of Fish Biology, 62 (2). pp. 299-310.

Birrell, Chico Liam (2003) Influences of benthic algae on coral settlement and post-settlement survival: implications for the recovery of disturbed and degraded reefs. Masters (Research) thesis, James Cook University.

Burrows, Damien Wayne (2003) The role of insect leaf herbivory on the mangroves Avicennia marina and Rhizophora stylosa. PhD thesis, James Cook University.

Bastidas, C., Benzie, J.A.H., and Fabricius, K.E. (2002) Genetic differentiation among populations of the brooding soft coral Clavularia koellikeri on the Great Barrier Reef. Coral Reefs, 21 (3). pp. 233-241.

Bean, Kyi, Jones, Geoffrey P., and Caley, M. Julian (2002) Relationships among distribution, abundance and microhabitat specialisation in a guild of coral reef triggerfish (family Balistidae). Marine Ecology - Progress Series, 233. pp. 263-272.

Baird, Andrew H,, Bellwood, David R., Connell, Joseph H., Cornell, Howard V., Hughes, Terry P., Karlson, Ronald H., and Rosen, Brian R. (2002) Coral reef biodiversity and conservation. Science, 296 (5570). pp. 1026-1028.

Bastidas, Ana Carolina (2002) Population dynamics and genetic structure of locally dominant species on coral reefs: a case study of the soft corals Sinularia flexibilis and Clavularia koellikeri. PhD thesis, James Cook University.

Bay, L.K., Jones, G.P., and McCormick, M.I. (2001) Habitat selection and aggression as determinants of spatial segregation among damselfish on a coral reef. Coral Reefs, 20 (3). pp. 289-298.

Brodie, Gilianne D., Klussmann-Kolb, Annette, and Gosliner, Terrence M. (2001) Anatomy and histology of a new species of Enotepteron (Cephalaspidea: Gastropteridae) from tropical northeastern Australia. The Veliger, 44 (4). pp. 362-369.

Bellwood, David R., and Hughes, Terry P. (2001) Regional-scale assembly rules and biodiversity of coral reefs. Science, 292 (5521). pp. 1532-1534.

Baird, A.H., Sadler, C., and Pitt, M. (2001) Synchronous spawning of Acropora in the Solomon Islands. Coral Reefs, 19 (3). p. 286.

Bastidas, C., Benzie, J.A.H., Uthicke, S., and Fabricius, K. (2001) Genetic differentiation among populations of a broadcast spawning soft coral, Sinularia flexibilis, on the Great Barrier Reef. Marine Biology, 138 (3). pp. 517-525.

Bellwood, D.R., and Wainwright, P.C. (2001) Locomotion in labrid fishes: implications for habitat use and cross-shelf biogeography on the Great Barrier Reef. Coral Reefs, 20 (2). pp. 139-150.

Bellwood, David R., and Fisher, Rebecca (2001) Relative swimming speeds in reef fish larvae. Marine Ecology-Progress Series, 211. pp. 299-303.

Brodie, Gilianne D. (2001) Some comparative histological aspects of the dendrodorid genera Doriopsilla and Dendrodoris (Opisthobranchia: Nudibranchia). Bollettino Malacologico, 37 (5-8). pp. 99-104.

Baird, Andrew H., Pratchett, Morgan S., Gibson, Deborah J., Koziumi, Noriko, and Marquis, Christopher P. (2001) Variable palatability of coral eggs to a planktivorous fish. Marine and Freshwater Research, 52 (6). pp. 865-868.

Baird, Andrew Hamilton (2001) The ecology of coral larvae: settlement patterns, habitat selection and the length of the larval phase. PhD thesis, James Cook University.

Baird, A.H., and Hughes, T.P. (2000) Competitive dominance by tabular corals: an experimental analysis of recruitment and survival of understorey assemblages. Journal of Experimental Marine Biology and Ecology, 251 (1). pp. 117-132.

Baird, A.H., and Babcock, R.C. (2000) Morphological differences among three species of newly settled pocilloporid coral recruits. Coral Reefs, 19 (2). pp. 179-183.

Bigelow, P.R., and Alexander, C.G. (2000) Diatoms on the cirri of tropical barnacles. Journal of the Marine Biological Association of the United Kingdom, 80 (4). pp. 737-738.

Baird, A., Marshall, Paul, and Wolstenholme, Jackie (2000) Mass spawning of Acropora in the coral sea. In: Abstracts of the Ninth International Coral Reef Symposium. p. 95. From: World Coral Reefs in the New Millenium: bridging research and management for sustainable development, 23-27 October 2000, Bali, Indonesia. (Unpublished)

Bellwood, David R., and Randall, John E. (2000) Pseudojuloides severnsi, a new species of wrasse from Indonesia and Sri Lanka (Perciformes: Labridae). Journal of South Asian Natural History, 5 (1). pp. 1-5.

Burns, K.A., Cody, S., Swannell, R.J.P., and Duke, N.C. (1999) Assessing the oil degradation potential of endogenous micro-organisms in tropical marine wetland. Mangroves and Salt Marshes, 3 (2). pp. 67-83.

Bellwood, David R. (1999) Fossil pharyngognath fishes from Monte Bolca, Italy, with a description of a new pomacentrid genus and species. Studi e Ricerche sui Giacimenti Terziari di Bolca, 8. pp. 207-217.

Berkelmans, R., and Willis, B.L. (1999) Seasonal and local spatial patterns in the upper thermal limits of corals on the inshore Central Great Barrier Reef. Coral Reefs, 18 (3). pp. 219-228.

Burns, Kathy, Codi, Susan, Pratt, Catherine, and Duke, Norman (1999) Weathering of hydrocarbons in mangrove sediments: testing the effects of using dispersants to treat oil spills. Organic Geochemistry, 30. pp. 1273-1286.

Baird, Andrew (1999) A large aggregation of Drupella rugosa following the mass bleaching of corals on the Great Barrier Reef. Reef Research, 9 (2). pp. 6-7.

Barlow, Christopher G. (1998) Aspects of the biology of juvenile barramundi Lates calcarifer (Bloch) relevant to production for recreational fisheries and farming, with a note on the proposal to introduce Nile perch Lates niloticus (L.) to Australia. PhD thesis, James Cook University.

Baird, Andrew (1998) Mass bleaching of corals on the Great Barrier Reef. Coral Reefs, 17 (4). p. 376.

Baird, A.H., and Hughes, T.P. (1997) Spatial variation in coral recruitment around Lizard Island, Australia. In: Proceedings of the International Coral Reef Symposium (2) pp. 1207-1210. From: 8th International Coral Reef Symposium, June 24-29 1996, Panama.

Beukers, Joanne S. (1996) The relative roles of recruitment and post-recruitment processes in the regulation of a coral reef damselfish population. PhD thesis, James Cook University.

Belda, Carmelita A. (1994) Inorganic nitrogen and phosphorus nutrition in tridacnid clams and their algal symbionts. PhD thesis, James Cook University of North Queensland.

Butler, Ian Robert Jacques (1994) An investigation into what constitutes lethal wounding in Acanthaster planci and an assessment of the effects of regeneration on gonad production. Masters (Research) thesis, James Cook University of North Queensland.

Belda, C.A., Lucas, J.S., and Yellowlees, D. (1993) Nutrient limitation in the giant clam-zooxanthellae symbiosis: effects of nutrient supplements on growth of the symbiotic partners. Marine Biology, 117 (4). pp. 655-664.

Babcock, R.C., Bull, G.D., Harrison, P.L., Heyward, A.J., Oliver, J.K., Wallace, C.C., and Willis, B.L. (1986) Synchronous spawnings of 105 scleractinian coral species on the Great Barrier Reef. Marine Biology, 90 (3). pp. 79-94.

Babcock, R.C., and Heyward, A.J. (1986) Larval development of certain gamete-spawning scleractinian corals. Coral Reefs, 5 (3). pp. 111-116.

Babcock, R.C. (1985) Growth and mortality in juvenile corals (Goniastrea, Platygyra and Acropora): the first year. In: Proceedings of the Fifth International Coral Reef Congress. pp. 355-360. From: Fifth International Coral Reef Congress, 27 May - 1 June 1985, Tahiti, French Polynesia.

Babcock, Russell C. (1984) Reproduction and distribution of two species of Goniastrea (Scleractinia) from the Great Barrier Reef Province. Coral Reefs, 2 (4). pp. 187-195.

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Cowlishaw, Melissa (2014) Determinants of home range and territory size in coral reef fishes. PhD thesis, James Cook University.

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Caballes, Ciemon F., and Pratchett, Morgan S. (2014) Reproductive biology and early life history of the crown-of-thorns starfish. In: Whitmore, Eric, (ed.) Echinoderms: ecology, habitats and reproductive biology. Marine Biology . Nova Science Publishers, New York, NY, USA, pp. 101-146.

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Cipresso Pereira, Pedro Henrique Cipresso, Moraes, Rodrigo Lima, dos Santos, Marcus Vinicius Bezerra, Lippi, Daniel Lino, Feitosa, João Lucas Leão, and UNSPECIFIED (2014) The influence of multiple factors upon reef fish abundance and species richness in a tropical coral complex. Ichthyological Research, 61 (4). pp. 375-384.

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Cowman, Peter F., and Bellwood, David R. (2013) The historical biogeography of coral reef fishes: global patterns of origination and dispersal. Journal of Biogeography, 40 (2). pp. 209-224.

Chaves, L.T.C., Pereira, P.H.C., and Feitosa, J.L.L. (2013) Coral reef fish association with macroalgal beds on a tropical reef system in North-eastern Brazil. Marine and Freshwater Research, 64 (12). pp. 1101-1111.

Clark, Kathryn E., Capper, Angela, Della Togna, Gina, Paul, Valerie J., Romero, Luz I., Johns, Timothy, Cubilla-Rios, Luis, and Capson, Todd L. (2013) Ecology- and bioassay-guided drug discovery for treatments of tropical parasitic disease: 5α,8α-epidioxycholest-6-en-3β-ol isolated from the mollusk Dolabrifera dolabrifera shows significant activity against Leishmania donovani. Natural Product Communications, 8 (11). pp. 1537-1540.

Chin, Andrew (2013) Hunting porcupines... Sport Diving Magazine, 160. pp. 48-49.

Ceh, Janja, Kilburn, Matt R., Cliff, John B., Raina, Jean-Baptiste, van Keulen, Mike, and Bourne, David G. (2013) Nutrient cycling in early coral life stages: Pocillopora damicornis larvae provide their algal symbiont (Symbiodinium) with nitrogen acquired from bacterial associates. Ecology and Evolution, 3 (8). pp. 2393-2400.

Chin, A., Heupel, M.R., Simpfendorfer, C.A., and Tobin, A.J. (2013) Ontogenetic movements of juvenile blacktip reef sharks: evidence of dispersal and connectivity between coastal habitats and coral reefs. Aquatic Conservation, 23 (3). pp. 468-474.

Chin, A., Tobin, A.J., Heupel, M.R., and Simpfendorfer, C.A. (2013) Population structure and residency patterns of the blacktip reef shark Carcharhinus melanopterus in turbid coastal environments. Journal of Fish Biology, 82 (4). pp. 1192-1210.

Cariglia, Nicoletta, Wilson, Shaun K., Graham, Nicholas A.J., Fisher, Rebecca, Robinson, Jan, Aumeeruddy, Riaz, Quatre, Rodney, and Polunin, Nicholas V.C. (2013) Sea cucumbers in the Seychelles: effects of marine protected areas on high-value species. Aquatic Conservation, 23 (3). pp. 418-428.

Chan, Neil C.S., and Connolly, Sean R. (2013) Sensitivity of coral calcification to ocean acidification: a meta-analysis. Global Change Biology, 19 (1). pp. 282-290.

Coker, Darren J., Walker, Stefan P.W., Munday, Philip L., and Pratchett, Morgan S. (2013) Social group entry rules may limit population resilience to patchy habitat disturbance. Marine Ecology Progress Series, 493. pp. 237-242.

Chang, Mei-Yu, Geffen, Audrey J., Kosler, Jan, Dundas, Siv Hjorth, FishPop Trace Consortium, , and Maes, Gregory E. (2012) The effect of ablation pattern on LA-ICPMS analysis of otolith element composition in hake, Merluccius merluccius. Environmental Biology of Fishes, 95 (4). pp. 509-520.

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Campbell, Stuart, Cinner, Joshua, Ardiwijaya, Rizya, Pardede, Shinta, Kartawijaya, Tasrif, Mukminin, Ahmad, Herdiana, Yudi, Hoey, Andrew S., Pratchett, Morgan, and Baird, Andrew (2012) Avoiding conflicts and protecting coral reefs: Customary management benefits marine habitats and fish biomass. Oryx, 46 (4). 486-494 .

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Coker, Darren J., Pratchett, Morgan S., and Munday, Philip L. (2012) Influence of coral bleaching, coral mortality and conspecific aggression on movement and distribution of coral-dwelling fish. Journal of Experimental Marine Biology and Ecology, 414-415. pp. 62-68.

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Ceh, Janja, Raina, Jean-baptiste, Soo, Rochelle M., van Keulen, Mike, and Bourne, David G. (2012) Coral-bacterial communities before and after a coral mass spawning event on Ningaloo Reef. PLoS One, 7 (5). pp. 1-7.

Carranza, Alvar, Munoz Recio, Araceli, Kitahara, Marcelo, Scarabino, Fabrizio, Ortega, Leonardo, Lopez, Guzman, Franco-Fraguas, Paula, De Mello, Camila, Acosta, Juan, and Fontan, Antia (2012) Deep-water coral reefs from the Uruguayan outer shelf and slope. Marine Biodiversity, 42 (3). pp. 411-414.

Chua, Chia-Miin, Schupp, Peter, Leggat, William, and Baird, Andrew (2012) Effects of ocean acidification on metamorphosis: brooding and spawning larvae. In: Proceedings of the 12th International Coral Reef Symposium. 8D_1. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Carl, C., Poole, A.J., Sexton, B.A., Glenn, F.L., Vucko, M.J., Williams, M.R., Whalan, S., and de Nys, R. (2012) Enhancing the settlement and attachment strength of pediveligers of Mytilus galloprovincialis by changing surface wettability and microtopography. Biofouling, 28 (2). pp. 175-186.

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Connolly, S.R., Lopez-Yglesias, M.A., and Anthony, K.R.N. (2012) Food availability promotes rapid recovery from thermal stress in a scleractinian coral. Coral Reefs, 31 (4). pp. 951-960.

Coker, D.J., Graham, N.A.J., and Pratchett, M.S. (2012) Interactive effects of live coral and structural complexity on the recruitment of reef fishes. Coral Reefs, 31 (4). pp. 919-927.

Caballes, C.F., Schupp, P.J., Pratchett, M.S., and Rivera Posada, J.A. (2012) Interspecific transmission and recovery of TCBS-induced disease between Acanthaster planci and Linckia guildingi. Diseases of Aquatic Organisms, 100 (3). pp. 263-267.

Cetina Heredia, Paulina (2012) Modelling physical and biological drivers of larval retention in reef systems. PhD thesis, James Cook University.

Carpenter, Stephen R., Folk, Carl, Norstrom, Albert, Olsson, Olof, Schultz, Lisen, Agarwal, Bina, Balvanera, Patricia, Campbell, Bruce, Carlos Castilla, Juan, Cramer, Wolfgang, DeFries, Ruth, Eyzaguirre, Pablo, Hughes, Terry P., Polasky, Stephen, Sanusi, Zainal, Scholes, Robert, and Spierenburg, Marja (2012) Program on ecosystem change and society: an international research strategy for integrated social-ecological systems. Current Opinion in Environmental Sustainability, 4 (1). pp. 134-138.

Ceccarelli, D.M., and Williamson, D.H. (2012) Sharks that eat sharks: opportunistic predation by wobbegongs. Coral Reefs, 31 (2). p. 471.

Campbell, Stuart J., Hoey, Andrew S., Maynard, Jeffrey, Kartawijaya, Tasrif, Cinner, Joshua, Graham, Nicholas A.J., and Baird, Andrew (2012) Weak compliance undermines the success of no-take zones in a large government-controlled marine protected area. PLoS ONE, 7 (11). e50074. pp. 1-12.

Chua, Chia-Miin (2012) The effects of ocean acidification and warming on the early life history stages of corals. PhD thesis, James Cook University.

Camus, Thomas (2012) The improvement of copepods intensive culture protocols as live feeds for aquaculture hatcheries. PhD thesis, James Cook University.

Cowman, P.F., and Bellwood, D.R. (2011) Coral reefs as drivers of cladogenesis: expanding coral reefs, cryptic extinction events, and the development of biodiversity hotspots. Journal of Evolutionary Biology, 24 (12). pp. 2543-2562.

Clague, Gillian E., Cheney, Karen L., Goldizen, Anne W., McCormick, Mark I., Waldie, Peter A., and Grutter, Alexandra S. (2011) Long-term cleaner fish presence affects growth of a coral reef fish. Biology Letters, 7 (6). pp. 863-865.

Ceccarelli, D.M., Richards, Z.T., Pratchett, M.S., and Cvitanovic, C. (2011) Rapid increase in coral cover on an isolated coral reef, the Ashmore Reef National Nature Reserve, north-western Australia. Marine and Freshwater Research, 62 (10). pp. 1214-1220.

Cetina-Heredia, Paulina, and Connolly, Sean R. (2011) A simple approximation for larval retention around reefs. Coral Reefs, 30 (3). pp. 593-605.

Causse, Romain, Ozouf-Costaz, Catherine, Koubbi, Philippe, Lamy, Dominique, Eléaume, Marc, Dettaï, Agnès, Duhamel, Guy, Busson, Frédéric, Pruvost, Patrice, Post, Alexandra, Beaman, Robin J., and Riddle, Martin J. (2011) Demersal ichthyofaunal shelf communities from the Dumont d’Urville Sea (East Antarctica). Polar Science, 5 (2). pp. 272-285.

Cripps, Ingrid, Munday, Philip L., and McCormick, Mark I. (2011) Ocean acidification affects prey detection by a predatory reef fish. PLoS One, 6 (7). e22736. pp. 1-7.

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Davis, Benjamin, Johnston, Ross, Baker, Ronnie, and Sheaves, Marcus (2012) Fish utilisation of wetland nurseries with complex hydrological connectivity. PLoS ONE, 7 (11). e49107. pp. 1-11.

Devine, B.M., Munday, P.L., and Jones, G.P. (2012) Rising CO2 concentrations affect settlement behaviour of larval damselfishes. Coral Reefs, 31 (1). pp. 229-238.

Dupont, Sam, Moya, Aurélie, and Bailly, Xavier (2012) Stable photosymbiotic relationship under CO2-induced acidification in the acoel worm Symsagittifera roscoffensis. PLoS ONE, 7 (1). e29568. pp. 1-8.

Donelson, Jennifer M., and Munday, Philip L. (2012) Thermal sensitivity does not determine acclimation capacity for a tropical reef fish. Journal of Animal Ecology, 81 (5). pp. 1126-1131.

Dixson, D.L., Munday, P.L., Pratchett, M., and Jones, G.P. (2011) Ontogenetic changes in responses to settlement cues by anemonefish. Coral Reefs, 30 (4). pp. 903-910.

Dixson, Danielle L., Jones, Geoffrey P., Munday, Philip L., Pratchett, Morgan S., Srinivasan, Maya, Planes, Serge, and Thorrold, Simon R. (2011) Terrestrial chemical cues help coral reef fish larvae locate settlement habitat surrounding islands. Ecology and Evolution, 1 (4). pp. 586-595.

Donelson, Jennifer M., Munday, Philip, Mccormick, Mark I., and Nilsson, Göran E. (2011) Acclimation to predicted ocean warming through developmental plasticity in a tropical reef fish. Global Change Biology, 17 (4). pp. 1712-1719.

Dickens, Luke C., Goatley, Christopher H.R., Tanner, Jennifer K., and Bellwood, David R. (2011) Quantifying relative diver effects in underwater visual censuses. PLoS One, 6 (4). e18965. pp. 1-8.

Donelson, Jennifer Marie (2011) Climate change and the future for coral reef fishes: the potential for acclimation. PhD thesis, James Cook University.

Daw, Tim M., Cinner, Joshua E., McClanahan, Timothy R., Graham, Nicholas A.J., and Wilson, Shaun K. (2011) Design factors and socioeconomic variables associated with ecological responses to fishery closures in the Western Indian Ocean. Coastal Management, 39 (4). pp. 412-424.

Duke, Norman C. (2011) Mangrove islands. In: Hopley, David, (ed.) Encyclopedia of Modern Coral Reefs. Structure, Form and Process. Springer, Dordrecht, The Netherlands, pp. 653-655.

Duke, Norman C. (2011) Mangroves. In: Hopley, David C., (ed.) Encyclopedia of Modern Coral Reefs. Structure, Form and Process. Encyclopedia of Earth Sciences Series . Springer, Dordrecht, The Netherlands, pp. 655-663.

Dixson, Danielle Lynn (2011) Smelling home: the use of olfactory cues for settlement site selection by coral reef fish larvae. PhD thesis, James Cook University.

Devine, Brynn Michelle (2011) The effects of ocean acidification on habitat associations of coral reef fishes. Masters (Research) thesis, James Cook University.

Dale, Patricia E.R., Dale, Michael B., Dowe, David L., Knight, Jon M., Lemckert, Charles J., Low Choy, Darryl C., Sheaves, Marcus J., and Sporne, Ilva (2010) A conceptual model for integrating physical geography research and coastal wetland management, with an Australian example. Progress in Physical Geography, 34 (5). pp. 605-624.

Dixson, Danielle L., Munday, Philip L., and Jones, Geoffrey P. (2010) Ocean acidification disrupts the innate ability of fish to detect predator olfactory cues. Ecology Letters, 13 (1). pp. 68-75.

Donelson, J.M., Munday, P.L., McCormick, M.I., Pankhurst, N.W., and Pankhurst, P.M. (2010) Effects of elevated water temperature and food availability on the reproductive performance of a coral reef fish. Marine Ecology Progress Series, 401. pp. 233-243.

Donelson, Jennifer M., Munday, Philip L., and McCormick, Mark I. (2009) Parental effects on offspring life histories: when are they important? Biology Letters, 5 (2). pp. 262-265.

Diaz-Pulido, Guillermo, McCook, Laurence, Dove, Sophie, Berkelmans, Ray, Roff, George, Kline, David I., Weeks, Scarla, Evans, Richard D., Williamson, David H., and Hoegh-Guldberg, Ove (2009) Doom and boom on a resilient reef: climate change, algal overgrowth and coral recovery. PLoS ONE, 4 (4). - .

Dixson, Danielle L. , Jones, Geoffrey P., Munday, Philip L., Planes, Serge, Pratchett, Morgan S., Srinivasan, Maya, Syms, Craig, and Thorrold, Simon R. (2008) Coral reef fish smell leaves to find island homes. Proceedings of the Royal Society of London Series B, Biological Sciences, 275. pp. 2831-2839.

Dornelas, Maria, and Connolly, Sean (2008) Multiple modes in a coral species abundance distribution. Ecology Letters, 11 (10). pp. 1008-1016.

Devlin, M.J., Barry, J., Mills, D.K., Gowen, R.J., Foden, J., Sivyer, D., and Tett, P. (2008) Relationships between suspended particulate material, light attenuation and Secchi depth in UK marine waters. Estuarine, Coastal and Shelf Science , 79 (3). pp. 429-439.

Donelson, Jennifer M., McCormick, Mark I., and Munday, Philip (2008) Parental condition affects early life-history of a coral reef fish. Journal of Experimental Marine Biology and Ecology, 360 (2). pp. 109-116.

Duke, Norman C. (2008) Conservation and management of mangroves in Australasia. In: Proceedings of the International Conferencea and Exhibition on the Mangroves of Indian and Western Pacific Oceans. pp. 26-38. From: International Conference and Exhibition on the Mangroves of Indian and Western Pacific Oceans, 21-24 August 2006, Kuala Lumpur, Malaysia.

Duke, N.C., and Larkum, A.W.D. (2008) Mangroves and seagrasses. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: Biology, Environment and Management. CSIRO Publishing, Collingwood, VIC, pp. 156-170.

Dinsdale, Elizabeth A., Pantos, Olga, Smriga, Steven, Edwards, Robert A., Angly, Florence, Wegley, Linda, Hatay, Mark, Hall, Dana, Brown, Elysa, Haynes, Matthew, Krause, Lutz, Sala, Enric, Sandin, Stuart A., Thurber, Rebecca Vega, Willis, Bette L., Azam, Farooq, Knowlton, Nancy, and Rohwer, Forest (2008) Microbial ecology for four coral atolls in the Northern Line Islands. PLoS Biology, 3 (2). pp. 1-17.

Diaz-Pulido, G., McCook, L.J., Chin, A., and Davidson, J. (2007) Cyclone promotes rapid colonisation of benthic diatoms in the Great Barrier Reef. Coral Reefs, 26 (4). p. 787.

Dornelas, Maria, Connolly, Sean R., and Hughes, Terrence P. (2006) Coral reef diversity refutes the neutral theory of biodiversity. Nature, 440 (7080). pp. 80-82.

Dove, Sophie, Ortiz, Juan Carlos, Enriquez, Susana, Fine, Maoz, Fisher, Paul, Iglesias-Prieto, Roberto, Thornhill, Dan, and Hoegh-Guldberg, Ove (2006) Response of holosymbiont pigments from the scleractinian coral Montipora monasteriata to short-term heat stress. Limnology and Oceanography, 51 (2). pp. 1149-1158.

Duke, Norman (2006) Australia's Mangroves: an authoritative guide to Australia’s mangrove plants. University of Queensland and Norman C. Duke, Brisbane, QLD, Australia.

Dornelas, Maria Ana Azeredo de (2006) Coral assemblages and neutral theory. PhD thesis, James Cook University.

Duke, Norman C. (2006) Indo-West Pacific stilt mangroves: Rhizophora apiculata, R. mucronata, R. stylosa, R. X annamalai, R. X lamarckii. In: Elevitch, Craig R., (ed.) Traditional Trees of Pacific Islands: their culture, environment, and use. Permanent Agriculture Resources (PAR), Holualoa, Hawaii, pp. 641-660.

Depczynski, Martial (2006) Small cryptic fishes on coral reefs : a new perspective on reef fish ecology and life histories. PhD thesis, James Cook University.

Depczynski, Martial, and Bellwood, David R. (2005) Wave energy and spatial variability in community structure of small cryptic coral reef fishes. Marine Ecology Progress Series, 303. pp. 283-293.

da Silva, Eduardo Teixeira (2005) Cadmium accumulation in the barnacle biomonitor Balanus amphitrite: combining field and laboratory observations with modelling. PhD thesis, James Cook University.

Duke, Norman C., Bell, Alicia M., Pedersen, Dan K., Roelfsema, Chris M., and Bengston Nash, Susan (2005) Herbicides implicated as the cause of severe mangrove dieback in the Mackay region, NE Australia: consequences for marine plant habitats of the GBR World Heritage Area. Marine Pollution Bulletin, 51 (1-4). pp. 308-324.

Devlin, Michelle (2005) Spatial and temporal patterns of flood plumes in the Great Barrier Reef, Australia. PhD thesis, James Cook University.

Dempster, Tim, and Kingsford, Michael J. (2004) Drifting objects as habitat for pelagic juvenile fish off New South Wales, Australia. Marine and Freshwater Research, 55 (7). pp. 675-687.

Davis, K.L.F., Russ, G.R., Williamson, D.H., and Evans, R.D. (2004) Surveillance and poaching on inshore reefs of the Great Barrier Reef Marine Park. Coastal Management, 32 (4). pp. 373-387.

Depczynski, M., and Bellwood, D.R. (2004) Microhabitat utilisation patterns in cryptobenthis coral reef fish communities. Marine Biology, 145 (3). pp. 455-463.

Diaz-Pulido, Guillermo, and McCook, Laurence J (2004) Effects of live coral, epilithic algal communities and substrate type on algal recruitment. Coral Reefs, 23 (2). pp. 225-233.

Dove, Sophie (2004) Scleractinian corals with photoprotective host pigments are hypersensitive to thermal bleaching. Marine Ecology Progress Series, 272. pp. 99-116.

Dartnall, Alan J., Byrne, Maria, Collins, John, and Hart, Michael W. (2003) A new viviparous species of asterinid (Echinodermata, Asteroidea, Asterinidae) and a new genus to accommodate the species of pantropical exiguoid sea stars. Zootaxa, 359. pp. 1-14.

Diaz-Pulido, Guillermo, and McCook, Laurence J. (2003) Relative roles of herbivory and nutrients in the recruitment of coral-reef seaweeds. Ecology, 84 (8). pp. 2026-2033.

Dinsdale, Elizabeth A. (2003) Indicators to assess coral reef conditions: integrating views of society. In: Proceedings of the World Congress on Aquatic Protected Areas 2002. pp. 415-420. From: Aquatic Protected Areas: what works best and how do we know?, August 2002, Cairns, QLD, Australia.

Depczynski, Martial, and Bellwood, David R. (2003) The role of cryptobenthic reef fishes in coral reef trophodynamics. Marine Ecology Progress Series, 256. pp. 183-191.

Duke, Norman, and Watkinson, Andrew J. (2002) Chlorophyll-deficient propagules of Avicennia marina and apparent longer term deterioration of mangrove fitness in oil-polluted sediments. Marine Pollution Bulletin, 44 (11). pp. 1269-1276.

Duke, Norman C. (2002) Sustained high levels of foliar herbivory of the mangrove Rhizophora stylosa by a moth larva Doratifera stenosa (Limacodidae) in north-eastern Australia. Wetlands Ecology and Management, 10 (5). pp. 403-419.

Diaz-Pulido, Guillermo (2002) Algal recruitment and reproduction in the context of reef degradation: interactions with corals, substrates, herbivores and nutrients. PhD thesis, James Cook University.

Devlin, Michelle, Waterhouse, Jane, Taylor, Jeremy, and Brodie, Jon (2001) Flood plumes in the Great Barrier Reef : spatial and temporal patterns in composition and distribution. Report. Great Barrier Reef Marine Park Authority, Townsville, Australia.

Duke, Norman C. (2001) Gap creation and regenerative processes driving diversity and structure of mangrove ecosystems. Wetlands Ecology and Management, 9 (3). pp. 257-269.

Dove, S.G., Hoegh-Guldberg, O., and Ranganathan, S. (2001) Major colour patterns of reef-building corals are due to a family of GFP-like proteins. Coral Reefs, 19 (3). pp. 197-204.

Duke, Norman (2001) Mangrove phenologies and the factors influencing them in the Australasian region. In: De Lacerda, Luiz-Drude, (ed.) Mangrove Ecosystems: Function and Management. Environmental Science . Springer-Verlag, Berlin, Germany, pp. 217-233.

Duke, Norman, and Wolanski, Eric (2001) Muddy coastal waters and depleted mangrove coastlines - depleted seagrass and coral reefs. In: Wolanski, Eric, (ed.) Oceanographic Processes of Coral Reefs: physical and biology links in the Great Barrier Reef. CRC Press, Washington, DC, USA, pp. 77-91.

Duke, Norman C., Burns, Kathryn A., Swannell, Richard P.J., Dalhaus, Otto, and Rupp, Roland J. (2000) Dispersant use and a bioremediation strategy as alternate means of reducing the impact of large oil spills on mangrove biota in Australia: the Gladstone field trials. Marine Pollution Bulletin, 41 (7-12). pp. 403-412.

Dijkstra, Henk, and Southgate, Paul C. (2000) A new living scallop (Bivalvia: Pectinidae) from the south-western Pacific. Molluscan Research, 20 (2). pp. 13-18.

Duke, Norman C., Pinzon, Zuleika S., and Prada, Martha C. (1999) Recovery of tropical mangrove forests following a major oil spill: a study of recruitment and growth, and the benefits of planting. In: Yáñez-Arancibia, A., and Lara-Domínguez, A.L., (eds.) Ecosistemas de Manglar en América Tropical / Mangrove Ecosystems in Tropical America. Instituto de Ecologia, Xalapa, México, pp. 231-254.

Duke, Norman, and Khan, M. Ajmal (1999) Structure and composition of the seaward mangrove forest at Mai Po Marshes Nature Reserve, Hong Kong. In: The mangrove ecosystem of Deep Bay and the Mai Po marshes, Hong Kong : proceedings of the International Workshop on the Mangrove Ecosystem of Deep Bay and the Mai Po Marshes, Hong Kong. pp. 83-104. From: International Workshop on the Mangrove Ecosystem of Deep Bay and the Mai Po Marshes, 3-20 September 1993, Hong Kong.

Duke, Norman, Ball, Marilyn, and Ellison, Joanna (1998) Factors influencing biodiversity and distributional gradients in mangroves. Global Ecology and Biogeography, 7 (1). pp. 27-47.

Duke, N.C., Burns, K.A., Ellison, J.C., Rupp, R.J., and Dalhaus, O. (1998) Effects of oil and dispersed-oil on mature mangroves in field trials at Gladstone. APPEA Journal, 38 (2). pp. 637-645.

Duke, N.C., Burns, K.A., and Dalhaus, O. (1998) Effects of oils and dispersed-oils on mangrove seedlings in planthouse experiments: a preliminary assessment of results two months after oil treatments. APPEA Journal, 38 (2). pp. 631-636.

Duke, N.C., Ellison, J.C., and Burns, K.A. (1998) Surveys of oil spill incidents affecting mangrove habitat in Australia: a preliminary assessment of incidents, impacts on mangroves, and recovery of deforested areas. APPEA Journal, 38 (2). pp. 646-654.

Duke, Norman C., Pinzón, Zulelka S., and Prada, Martha C. (1997) Large scale damage to mangrove forests following two large oil spills in Panama. Biotropica, 29 (1). pp. 2-14.

Duke, Norman (1997) Mangroves in the Great Barrier Reef World Heritage Area: current status, long-term trends, management implications and research. In: Wachenfeld, David, Oliver, Jamie, and Davis, Kim, (eds.) State of the Great Barrier Reef World Heritage Area Workshop. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia, pp. 288-299.

Duke, Norman (1996) Mangrove reforestation in Panama: an evaluation of planting in areas deforested by a large oil spill. In: Field, Colin D., (ed.) Restoration of mangrove ecosystems. International Society for Mangrove Ecosystems ISME & International Tropical Timber Organization ITTO, Okinawa, Japan, pp. 209-232.

Duke, Norman C. (1995) Genetic diversity, distributional barriers and rafting continents - more thoughts on the evolution of mangroves. Hydrobiologia, 295 (1). pp. 167-181.

Duke, Norman C., Pinzon, Zuleika S., and Prada, Martha C. (1994) Los manglares / The swamps. Scientia, 8 (2). pp. 80-98.

Duke, Norman C., and Pinzón M., Zuleika S. (1992) Aging Rhizophora seedlings from leaf scar nodes: a technique for studying recruitment and growth in mangrove forests. Biotropica, 24 (2 Part A). pp. 173-186.

Duke, Norman C. (1992) Mangrove floristics and biogeography. In: Robertson, A.I., and Alongi, D.M., (eds.) Tropical Mangrove Ecosystems. Coastal and Estuarine Studies Series (41). American Geophysical Union, Washington, D.C., pp. 63-100.

de Nys, Rocky (1991) Natural products chemistry and chemical ecology of tropical marine algae. PhD thesis, James Cook University.

Duke, Norman (1991) Nypa in the mangroves of Central America: introduced or relict? Principes, 35 (3). pp. 127-132.

Duke, N.C. (1991) A systematic revision of the mangrove genus Avicennia (Avicenniaceae) in Australasia. Australian Systematic Botany, 4 (2). pp. 299-324.

Duke, N.C. (1990) Morphological variation in the mangrove genus Avicennia in Australasia: systematic and ecological considerations. Australian Systematic Botany, 3 (2). pp. 221-239.

Duke, N.C. (1990) Phenological trends with latitude in the mangrove tree Avicennia marina. Journal of Ecology, 78 (1). pp. 113-133.

Duke, N.C. (1988) Phenologies and litter fall of two mangrove trees, Sonneratia alba Sm. and S. caseolaris (L.) Engl., and their putative hybrid, S. X gulngai N.C. Duke. Australian Journal of Botany, 36 (4). pp. 473-482.

Duke, Norman (1988) An endemic mangrove species, Avicennia integra sp. nov. (Avicenniaceae), in northern Australia. Australian Systematic Botany, 1 (2). pp. 177-180.

Duke, N.C., and Jackes, Betsy R. (1987) A systematic revision of the mangrove genus Sonneratia (Sonneratiaceae) in Australasia. Blumea, 32 (2). pp. 277-302.

Dale, P.E.R., Hulsman, K., Harrison, D., and Congdon, Brad (1986) Distribution of immature stages of Aedes vigilax on a salt marsh in south-eastern Queensland. Australian Journal of Ecology, 11 (3). pp. 269-278.

Duke, N.C., Bunt, J.S., and Williams, W.T. (1984) Observations on the floral and vegetative phenologies of north-eastern Australian mangroves. Australian Journal of Botany, 32 (1). pp. 87-99.

Duke, N.C., Birch, W.R., and Williams, W.T. (1981) Growth rings and rainfall correlations in a mangrove tree of the genus Diospyros (Ebenaceae). Australian Journal of Botany, 29 (2). pp. 135-142.

Duke, N.C., Bunt, J.S., and Williams, W.T. (1981) Mangrove litter fall in north-eastern Australia. 1. Annual totals by component in selected species. Australian Journal of Botany, 29 (5). pp. 547-553.

Duke, N.C., and Bunt, J.S. (1979) The genus Rhizophora (Rhizophoraceae) in north-eastern Australia. Australian Journal of Botany, 27 (5). pp. 657-678.

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Epstein, Hannah Elizabeth (2018) Investigating the drivers of microbial community composition in reef-building corals. PhD thesis, James Cook University.

Eurich, Jacob G. (2018) Processes underlying the fine-scale partitioning and niche diversification in a guild of coral reef damselfishes. PhD thesis, James Cook University.

Emslie, Michael J. (2016) Effects of habitat versus fisheries management on spatio-temperal variation in fish assemblages on the Great Barrier Reef. PhD thesis, James Cook University.

Espinoza, Mario, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2015) Residency patterns and movements of grey reef sharks (Carcharhinus amblyrhynchos) in semi-isolated coral reef habitats. Marine Biology, 162 (2). pp. 343-358.

Espinoza, Mario, Lédée, Elodie J.I., Simpfendorfer, Colin A., Tobin, Andrew J., and Heupel, Michelle R. (2015) Contrasting movements and connectivity of reef-associated sharks using acoustic telemetry: implications for management. Ecological Applications, 25 (8). pp. 2101-2118.

Espinoza, Mario, Munroe, Samantha E.M., Clarke, Tayler M., Fisk, Aaron T., and Wehrtmann, Ingo S. (2015) Feeding ecology of common demersal elasmobranch species in the Pacific coast of Costa Rica inferred from stable isotope and stomach content analyses. Journal of Experimental Marine Biology and Ecology, 470. pp. 12-25.

Espinoza, Mario, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2015) Movement patterns of silvertip sharks (Carcharhinus albimarginatus) on coral reefs. Coral Reefs, 34 (3). pp. 807-821.

Eriksen, Marit Skog, Poppe, Trygve T., McCormick, Mark, Damsgard, Børge, Salte, Ragnar, Braastad, Bjarne O., and Bakken, Morten (2015) Simulated maternal pre-spawning stress affects offspring's attributes in farmed Atlantic salmon Salmo salar (Linnaeus, 1758). Aquaculture Research, 46 (6). pp. 1480-1489.

Espinoza, Mario, Cappo, Mike, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2014) Quantifying shark distribution patterns and species-habitat associations: implications of marine park zoning. PLoS ONE, 9 (9). e106885. pp. 1-17.

Eagle, Janelle V., Baird, Andrew H., Jones, Geoffrey P., and Kingsford, Michael J. (2012) Recruitment hotspots: consistent spatial patterns in the relative abundance of coral recruits at One Tree Island, Australia. Galaxea, Journal of Coral Reef Studies, 14 (1). pp. 5-22.

Emslie, M.J., Logan, M., Ceccarelli, D.M., Cheal, A.J., Hoey, A.S., Miller, I., and Sweatman, H.P.A. (2012) Regional-scale variation in the distribution and abundance of farming damselfishes on Australia's Great Barrier Reef. Marine Biology, 159 (6). pp. 1293-1304.

Eriksen, M.S., Færevik, G., Kittilsen, S., McCormick, M.I., Damsgård, B., Braithwaite, V.A., Braastad, B.O., and Bakken, M. (2011) Stressed mothers - troubled offspring: a study of behavioural maternal effects in farmed Salmo salar. Journal of Fish Biology, 79 (3). pp. 575-586.

Eléaume, Marc, Beaman, Robin J., Griffiths, Huw J., Best, Ben, Riddle, Martin J., Wadley, Victoria, Rintoul, Stephen R., Hemery, Lenaïg G., and Améziane, Nadia (2011) Near-bottom current direction inferred from comatulid crinoid feeding postures on the Terre Adélie and George V shelf, East Antarctica. Deep-sea Research. Part II: topical studies in oceanography, 58 (1-2). pp. 163-169.

Emslie, M.J., Pratchett, M.S., and Cheal, A.J. (2011) Effects of different disturbance types on butterflyfish communities of Australia's Great Barrier Reef. Coral Reefs, 30 (2). pp. 461-471.

Emslie, M.J., Pratchett, M.S., Cheal, A.J., and Osborne, K. (2010) Great Barrier Reef butterflyfish community structure: the role of shelf position and benthic community type. Coral Reefs, 29 (3). pp. 705-715.

Edmunds, Richard C. (2009) Evidence for thermal adaptation among geographically, genetically and thermally distinct populations of the Australian barramundi, Lates calcarifer (Bloch 1790): a multi-level approach. PhD thesis, James Cook University.

Ettinger-Epstein, Piers, and Kingsford, Michael J. (2008) Effects of the El Nino southern oscillation on Turbo torquatus (Gastropoda) and their kelp habitat. Austral Ecology, 33 (5). pp. 594-606.

Evans, R.D. (2008) Assessment of an underwater biopsy probe for collecting teleost fish tissue samples. Marine Ecology Progress Series, 368. pp. 305-308.

Ettinger-Epstein, Piers, Whalan, Steve, Battershill, Christopher N., and de Nys, Rocky (2008) A hierarchy of settlement cues influences larval behaviour in a coral reef sponge. Marine Ecology Progress Series, 365. pp. 103-113.

Ettinger-Epstein, Piers, Whalan, Steve W., Battershill, Christopher N., and de Nys, Rocky (2007) Temperature cues gametogenesis and larval release in a tropical sponge. Marine Biology, 153 (2). pp. 171-178.

Edgar, Graham J., Russ, Garry R., and Babcock, Russ C. (2007) Marine protected areas. In: Connell, Sean D., and Gillanders, Bronwyn M., (eds.) Marine Ecology. Oxford University Press, South Melbourne, VIC, Australia, pp. 533-555.

Ettinger-Epstein, Piers (2006) Natural products and their supply from the tropical sponge Luffariella variabilis. PhD thesis, James Cook University.

Eagle, Janelle Vinita (2006) Recruitment hotspots around a coral reef: the roles of hydrodynamics and habitats. PhD thesis, James Cook University.

Edmunds, Peter J., Gates, Ruth D., Leggat, William, Hoegh-Guldberg, Ove, and Allen-Requa, Laurie (2005) The effect of temperature on the size and population density of dinoflagellates in larvae of the reef coral Porites astreoides. Invertebrate Biology, 124 (3). pp. 185-193.

Eagle, Janelle V., and Jones, Geoffrey P. (2004) Mimicry in coral reef fishes: ecological and behavioural responses of a mimic to its model. Journal of Zoology, 264 (1). pp. 33-43.

Evans, R.D., and Russ, G.R. (2004) Larger biomass of targeted reef fish in the no-take marine reserves on the Great Barrier Reef, Australia. Aquatic Conservation: marine and freshwater ecosystems , 14 (5). pp. 505-519.

Eagle, Janelle V., Jones, Geoffrey P., and McCormick, Mark I. (2001) A multi-scale study of the relationships between habitat use and the distribution and abundance patterns of three coral reef angelfishes (Pomacanthidae). Marine Ecology-Progress Series, 214. pp. 253-265.

Emslie, Michael J., and Jones, Geoffrey P. (2001) Patterns of embryo mortality in a demersally spawning coral reef fish and the role of predatory fishes. Environmental Biology of Fishes, 60 (4). pp. 363-373.

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Fries, Jakob (2019) Measuring productivity of Australian tropical estuaries using standing stock analysis. Masters (Research) thesis, James Cook University.

Ferrari, Maud C.O., McCormick, Mark I., Meekan, Mark G., and Chivers, Douglas P. (2015) Background level of risk and the survival of predator-naive prey: can neophobia compensate for predator naivety in juvenile coral reef fishes? Proceedings of the Royal Society of London Series B, Biological Sciences, 282 (1799). pp. 1-5.

Foster, T., Gilmour, J.P., Chua, C.M., Falter, J.L., and McCulloch, M.T. (2015) Effect of ocean warming and acidification on the early life stages of subtropical Acropora spicifera. Coral Reefs, 34 (4). pp. 1217-1226.

Fabricius, K, Kluibenschedl, A., Harrington, L., Noonan, S., and De'ath, G. (2015) In situ changes of tropical crustose coralline algae along carbon dioxide gradients. Scientific Reports, 5. 9537.

Ferrari, Maud C.O., Munday, Philip L., Rummer, Jodie L., McCormick, Mark I., Corkill, Katherine, Watson, Sue-Ann, Allan, Bridie J.M., Meekan, Mark G., and Chivers, Douglas P. (2015) Interactive effects of ocean acidification and rising sea temperatures alter predation rate and predator selectivity in reef fish communities. Global Change Biology, 21. pp. 1848-1855.

Ferrari, Maud C.O., McCormick, Mark I., Allan, Bridie J.M., Choi, Rebecca, Ramasamy, Ryan A., Johansen, Jacob L., Mitchell, Matthew D., and Chivers, Douglas P. (2015) Living in a risky world: the onset and ontogeny of an integrated antipredator phenotype in a coral reef fish. Scientific Reports, 5. 15537. pp. 1-13.

Fox, Rebecca J., Bellwood, David R., and Jennions, Michael D. (2015) Why pair? Evidence of aggregative mating in a socially monogamous marine fish (Siganus doliatus, Siganidae). Royal Society Open Science, 2. 150252. pp. 1-7.

Ferrari, Maud C.O., McCormick, Mark I., Allan, Bridie J.M., Choi, Rebecca, Ramasamy, Ryan A., and Chivers, Douglas P. (2015) The effects of background risk on behavioural lateralization in a coral reef fish. Functional Ecology, 29 (12). pp. 1553-1559.

Fabricius, K.E, Logan, M., Weeks, S., and Brodie, J. (2014) The effects of river run-off on water clarity across the central Great Barrier Reef. Marine Pollution Bulletin, 84 (1-2). pp. 191-200.

Fox, Rebecca J., and Bellwood, David R. (2014) Herbivores in a small world: network theory highlights vulnerability in the function of herbivory on coral reefs. Functional Ecology, 28 (3). pp. 642-651.

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Hobbs, Jean-Paul A. (2011) Reef fishes on isolated islands: community structure, endemism and extinction. PhD thesis, James Cook University.

Hughes, T.P., Bellwood, D.R., Baird, A.H., Brodie, J., Bruno, J.F., and Pandolfi, J.M. (2011) Shifting base-lines, declining coral cover, and the erosion of reef resilience: comment on Sweatman et al. (2011). Coral Reefs, 30 (3). pp. 653-660.

Hoegh-Guldberg, Ove, Andréfouët, Serge, Fabricius, Katharina E., Diaz-Pulido, Guillermo, Lough, Janice M., Marshall, Paul A., and Pratchett, Morgan S. (2011) Vulnerability of coral reefs in the tropical Pacific to climate change. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, Noumea, New Caledonia, pp. 251-296.

Hughes, Terry P., Graham, Nicholas A.J., Jackson, Jeremy B.C., Mumby, Peter J., and Steneck, Robert S. (2010) Rising to the challenge of sustaining coral reef resilience. Trends in Ecology & Evolution, 25 (11). pp. 633-642.

Hobbs, J.-P. A., and McDonald, C.A. (2010) Increased seawater temperature and decreased dissolved oxygen triggers fish kill at the Cocos (Keeling) Islands, Indian Ocean. Journal of Fish Biology, 77 (6). pp. 1219-1229.

Hanson, N.N., Wurster, C.M., EIMF, , and Todd, C.D. (2010) Comparison of secondary ion mass spectrometry and micromilling/continuous flow isotope ratio mass spectrometry techniques used to acquire intra-otolith δ18O values of wild Atlantic salmon (Salmo salar). Rapid Communications in Mass Spectrometry, 24 (17). pp. 2491-2498.

Hoey, A.S., and Bellwood, D.R. (2010) Cross-shelf variation in browsing intensity on the Great Barrier Reef. Coral Reefs, 29 (2). pp. 499-508.

Hutchinson, N., and Rhodes, K.L. (2010) Home range estimates for squaretail coralgrouper, Plectropomus areolatus (Rüppell 1830). Coral Reefs, 29 (2). pp. 511-519.

Hutchinson, Neil, Hunt, Taylor, and Morris, Liz (2010) Seagrass and Reef Program for Port Phillip Bay: temperate reefs literature review. Report. Victorian Department of Primary Industries, Melbourne, VIC, Australia.

Hobbs, Jean-Paul A., Ayling, Anthony, Choat, J. Howard, Gilligan, Justin J., McDonald, Christian A., Neilson, Joseph, and Newman, Stephen J. (2010) New records of marine fishes illustrate the biogeographic importance of Christmas Island, Indian Ocean. Zootaxa, 2422. pp. 63-68.

Hoey, A.S., and Bellwood, D.R. (2010) Damselfish territories as a refuge for macroalgae on coral reefs. Coral Reefs, 29 (1). pp. 107-118.

Hanafy, M.H., Aamer, M.A., Habib, M., Rouphael, Anthony B., and Baird, Andrew H. (2010) Synchronous reproduction of corals in the Red Sea. Coral Reefs, 29 (1). pp. 119-124.

Hobbs, Jean-Paul, and Frisch, Ashley J. (2010) Coral disease in the Indian Ocean: taxonomic susceptibility, spatial distribution and the role of host density on the prevalence of white syndrome. Diseases of Aquatic Organisms, 89 (1). pp. 1-8.

Holmes, Thomas H., and McCormick, Mark I. (2010) Size-selectivity of predatory reef fish on juvenile prey. Marine Ecology Progress Series, 399. pp. 273-283.

Hoey, Andrew, and Bellwood, David (2010) Among-habitat variation in herbivory on Sargassum spp. on a mid-shelf reef in the northern Great Barrier Reef. Marine Biology, 157 (1). pp. 189-200.

Halford, Andrew Robert (2010) Disturbance effects on tropical reef fish assemblages at large spatial and temporal scales. PhD thesis, James Cook University.

Hamann, M., Godfrey, M.H., Seminoff, J.A., Arthur, K., Barata, P.C.R., Bjorndal, K.A., Bolten, A.B., Broderick, A.C., Campbell, L.M., Carreras, C., Casale, P., Chaloupka, M., Chan, S.K.F, Coyne, M.S., Crowder, L.B., Diez, C.E., Dutton, P.H., Epperly, S.P., FitzSimmons, N.N., Formia, A., Girondot, M., Hays, G.C., Cheng, I.J., Kaska, Y., Lewison, R., Mortimer, J.A., Nichols, W.J., Reina, R.D., Shanker, K., Spotila, J.R., Tomás, J., Wallace, B.P., Work, T.M., Zbinden, J., and Godley, B.J. (2010) Global research priorities for sea turtles: informing management and conservation in the 21st century. Endangered Species Research, 11 (3). pp. 245-269.

Hobbs, Jean-Paul A,, Jones, G.P., and Munday, P.L. (2010) Rarity and extinction risk in coral reef angelfishes on isolated islands: interrelationships among abundance, geographic range size and specialisation. Coral Reefs, 29 (1). pp. 1-11.

Hazevoet, Cornelis J., Monteiro, Vanda, López, Pedro, Varo, Nuria, Torda, Gergely, Berrow, Simon, and Gravanita, Barbara (2010) Recent data on whales and dolphins (Mammalia: Cetacea) from the Cape Verde Islands, including records of four taxa new to the archipelago. Zoologia Caboverdiana, 1 (2). pp. 75-99.

Hoey, A.S. (2010) Size matters: macroalgal height influences the feeding response of coral reef herbivores. Marine Ecology Progress Series, 411. pp. 299-302.

Holmes, Thomas H., and McCormick, Mark I. (2010) Smell, learn and live: the role of chemical alarm cues in predator learning during early life history in a marine fish. Behavioural Processes, 83 (3). pp. 299-305.

Haapkylä, J., Melbourne-Thomas, J., Flavell, M., and Willis, B.L. (2010) Spatiotemporal patterns of coral disease prevalence on Heron Island, Great Barrier Reef, Australia. Coral Reefs, 29 (4). pp. 1035-1045.

Herdiana, Yudi, Campbell, Stuart, and Baird, Andrew (2010) Systematic marine conservation planning: towards a marine representative areas network in Nanggruh Aceh Darussalam, Indonesia. In: Proceedings of the 11th International Coral Reef Symposium. pp. 1112-1115. From: 11th International Coral Reef Symposium, 07 - 11 July 2008, Fort Lauderdale, FL, USA.

Hoey, Andrew Scott (2010) The ecosystem role of macroalgal browsing fishes on coral reefs. PhD thesis, James Cook University.

Hoey, Andrew S., and Bellwood, David R. (2009) Limited functional redundancy in a high diversity system: single species dominates key ecological process on coral reefs. Ecosystems, 12 (8). pp. 1316-1328.

Hobbs, J-P.A., Frisch, A.J., Hamanaka, T., McDonald, C.A., Gilligan, J.J., and Neilson, J. (2009) Seasonal aggregation of juvenile whale sharks (Rhincodon typus) at Christmas Island, Indian Ocean. Coral Reefs, 28 (3). p. 577.

Hughes, A. Randall, Williams, Susan L., Duarte, Carlos M., Heck Jr, Kenneth L., and Waycott, Michelle (2009) Associations of concern: declining seagrasses and threatened dependent species. Frontiers in Ecology and the Environment, 7 (5). pp. 242-246.

Hobbs, Jean-Paul A., Frisch, Ashley J., Allen, Gerald R., and van Herwerden, Lynne (2009) Marine hybrid hotspot at Indo-Pacific biogeographic border. Biology Letters, 5 (2). pp. 258-261.

Hoogenboom, Mia O., and Connolly, Sean R. (2009) Defining fundamental niche dimensions of corals: synergistic effects of colony size, light, and flow. Ecology, 90 (3). pp. 767-780.

Howells, E.J., van Oppen, M.J.H., and Willis, B.L. (2009) High genetic differentiation and cross-shelf patterns of genetic diversity among Great Barrier Reef populations of Symbiodinium. Coral Reefs, 28 (1). pp. 215-225.

Holmes, Thomas H., and McCormick, Mark I. (2009) Influence of prey body characteristics and performance on predator selection. Oecologia, 159 (2). pp. 401-413.

Haapkyla, Jessica, Seymour, Adrian S., Barneah, Orit, Brickner, Itzchak, Hennige, Sebastian, Suggett, David, and Smith, David (2009) Association of Waminoa sp. (Acoela) with corals in the Wakatobi Marine Park, South-East Sulawesi, Indonesia. Marine Biology, 156. pp. 1021-1027.

Hanson, N.N., Wurster, C.M., Bird, M.I., and Boyd, I.L. (2009) Intrinsic and extrinsic forcing in life histories: patterns of growth and stable isotopes in male Antarctic fur seal teeth. Marine Ecology Progress Series, 388. pp. 263-272.

Howard, W., de Salas, M, Cheal, A., Lough, J., McKinnon, D., Meekan, M., Sweatman, H., Coleman, M., Chambers, L., Dunlop, N., Church, J., Dowdney, J., Feng, M., Griffiths, S., Hemer, M., Hobday, A., Mapstone, B., Matear, R., Poloczanska, E., Richardson, A., Ridgway, K., Risbey, J., Thompson, P., Thresher, R., Weller, E., Saintilan, N., Wilson, S., Lenanton, R., Hosja, W., Moore, P., Wernberg, T., Marshall, P., Connolly, R., McDonald, J., Hill, K., Congdon, B, Devney, C., Fuentes, M., Graham, N., Hamann, M., Hughes, T., Kingsford, M., Munday, P., Pratchett, M., Sheaves, M., Goodwin, I., Raftos, D., Williamson, J., Beardall, J., Brett, S., Waschka, M., Dann, P., Ward, T., Edgar, G., Swadling, K., Connell, S., Russell, B., Lukoschek, V., Havenhand, J., McGregor, S., Jenkins, G., Campbell, A., Steinberg, P., Anthony, K., Lovelock, C., Skilleter, G., Figueira, W., Davidson, J., Hallegraeff, G., Holbrook, N., Booth, D., Doblin, M., Kendrick, G., Smale, D., Parker, L., and Ross, P. (2009) Marine Climate Change in Australia: impacts and adaptation responses: 2009 report card. Report. National Climate Change Adaptation Research Facility (NCCARF).

Hughes, Terry P. (2009) Seascape patterns and dynamics of coral reefs. In: Levin, Simon A., (ed.) The Princeton Guide to Ecology. Princeton University Press, Princeton, New Jersey, USA, pp. 482-487.

Haapkyla, Jessica, Unsworth, Richard K.F., Seymour, Adrian S., Melbourne-Thomas, Jessica, Flavell, Mike, Willis, Bette L., and Smith, David J. (2009) Spatio-temporal coral disease dynamics in the Wakatobi Marine National Park, South-East Sulawesi, Indonesia. Diseases of Aquatic Organisms, 87 (1-2). pp. 105-115.

Horne, John B., van Herwerden, Lynne, Choat, J. Howard, and Robertson, D.R. (2008) High population connectivity across the Indo-Pacific: congruent lack of phylogeographic structure in three reef fish congeners. Molecular Phylogenetics and Evolution, 49 (2). pp. 629-638.

Heupel, Michelle R., Reiss, Katie. L., Yeiser, Beau G., and Simpfendorfer, Colin A. (2008) Effects of biofouling on performance of moored data logging acoustic receivers. Limnology and Oceanography: Methods, 6. pp. 327-335.

Hoogenboom, Mia O., Connolly, Sean R., and Anthony, Kenneth R.N. (2008) Interactions between morphological and physiological plasticity optimize energy acquisition in corals. Ecology, 89 (4). pp. 1144-1154.

Hoey, A. S., and Bellwood, D. R. (2008) Cross-shelf variation in the role of parrotfishes on the Great Barrier Reef. Coral Reefs, 27 (1). pp. 37-47.

Hamilton, R.J., Adams, S., and Choat, J.H. (2008) Sexual development and reproductive demography of the green humphead parrotfish (Bolbometopon muricatum) in the Solomon Islands. Coral Reefs, 27 (1). pp. 153-163.

Harold, Antony S., Winterbottom, Richard, Munday, Philip L., and Chapman, Robert W. (2008) Phylogenetic relationships of Indo-Pacific coral gobies of the genus Gobiodon (Teleostei: Gobiidae) based on morphological and molecular data. Bulletin of Marine Science, 82 (1). pp. 119-136.

Hueter, Robert E., and Simpfendorfer, Colin A. (2008) Case study: trends in blue shark abundance in the western north Atlantic as determined by a fishery-independent survey. In: Camhi, Merry D., Pikitch, Ellen K., and Babcock, Elizabeth A., (eds.) Sharks of the Open Ocean: biology, fisheries & conservation. Blackwell Publishing, Oxford, UK, pp. 236-241.

Hobbs, J.-P.A, and Salmond, J.K. (2008) Cohabitation of Indian and Pacific Ocean species at Christmas and Cocos (Keeling) Islands. Coral Reefs, 27 (4). p. 933.

Heupel, M.R., Williams, A.J., Welch, D.J., Mapstone, B.D., Ballagh, A., and Simpfendorfer, C.A. (2008) Compilation of information on the interaction of reef sharks with the reef line fishery in the Great Barrier Reef Marine Park: final report to the Great Barrier Reef Marine Park Authority. Report. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia.

Harvell, C.D., Woodley, C., Raymundo, L., and Sato, Y. (2008) Detecting and assessing outbreaks. In: Raymundo, Laurie J., Couch, Courtney S., and Harvell, C. Drew, (eds.) Coral Disease Handbook: guidelines for assessment monitoring and management. Coral Reef Targeted Research and Capacity Building for Management Program, pp. 65-74.

Hughes, T.P. (2008) Human impact on coral reefs. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 85-94.

Heupel, Michelle R., and Simpfendorfer, Colin A. (2008) Movement and distribution of young bull sharks Carcharhinus leucas in a variable estuarine environment. Aquatic Biology, 1. pp. 277-289.

Heatwole, H., and Lukoschek, V. (2008) Reptiles. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 342-348.

Hobbs, J.P., Choat, J.H., Robbins, W.D., Van Herwerden, Lynne, Feary, D.A., and Ayling, Anthony (2008) Unique fish assemblages at world's southernmost oceanic coral reefs, Elizabeth and Middleton Reefs, Tasman Sea, Australia. Coral Reefs, 27 (1). p. 15.

Hoegh-Guldberg, Ove, Hughes, Terry, Marsh, Helene, Pandolfi, John, and Possingham, Hugh (2008) Urgent need for improved protection of the Coral Sea. In: Zethovan, Imogen, (ed.) An Australian Coral Sea Heritage Park. Pew Charitable Trusts, Philadelphia, USA, pp. 11-13.

Hamann, Mark, Jessop, Tim S., and Schäuble, Chloe S. (2007) Fuel use and corticosterone dynamics in hatchling green sea turtles (Chelonia mydas) during natal dispersal. Journal of Experimental Marine Biology and Ecology, 353 (1). pp. 13-21.

Heupel, Michelle (2007) Exiting Terra Ceia Bay: examination of cues stimulating migration from a summer nursery area. In: McCandless, Camilla T., Kohler, Nancy E., and Pratt Jr., Harold L., (eds.) Shark Nursery Grounds of the Gulf of Mexico and the East Coast Waters of the United States. American Fisheries Society, Bethesda MD, pp. 265-280.

Hughes, Terence P., Gunderson, Lance H., Folke, Carl, Baird, Andrew H., Bellwood, David, Berkes, Fikret, Crona, Beatrice, Helfgott, Ariella, Leslie, Heather, Norberg, Jon, Nyström, Marcus, Olsson, Per, Österblom, Henrik, Scheffer, Marten, Schuttenberg, Heidi, Steneck, Robert S., Tengo, Maria, Troell, Max, Walker, Brian, Wilson, James, and Worm, Boris (2007) Adaptive management of the Great Barrier Reef and the Grand Canyon World Heritage Areas. Ambio, 36 (7). pp. 586-592.

Hemmrich, Georg, Miller, David J., and Bosch, Thomas C.G. (2007) The evolution of immunity: a low-life perspective. Trends in Immunology, 28 (10). pp. 449-454.

Hernaman, V., and Munday, P.L. (2007) Evolution of mating systems in coral reef gobies and constraints on mating system plasticity. Coral Reefs, 26 (3). pp. 585-595.

Hoey, J., McCormick, M.I., and Hoey, A.S. (2007) Influence of depth on sex-specific energy allocation patterns in a tropical reef fish. Coral Reefs, 26 (3). pp. 603-613.

Heupel, M.R., and Bennett, M.B. (2007) Estimating abundance of reef-dwelling sharks: a case study of the epaulette Shark, Hemiscyllium ocellatum (Elasmobranchii: Hemiscyllidae). Pacific Science, 61 (3). pp. 383-394.

Heupel, Michelle R., Carlson, John K., and Simpfendorfer, Colin A. (2007) Shark nursery areas: concepts, definition, characterization and assumptions. Marine Ecology Progress Series, 337. pp. 287-297.

Hughes, Terence P., Rodrigues, Maria J., Bellwood, David R., Ceccarelli, Daniela, Hoegh-Guldberg, Ove, McCook, Laurence, Moltschaniwskyj, Natalie, Pratchett, Morgan S., Steneck, Robert S., and Willis, Bette (2007) Phase shifts, herbivory, and the resilience of coral reefs to climate change. Current Biology, 17 (4). pp. 360-365.

Hughes, Terry P., Bellwood, David R., Folke, Carl S., McCook, Laurence J., and Pandolfi, John M. (2007) No-take areas, herbivory and coral reef resilience. Trends in Ecology & Evolution, 22 (1). pp. 1-3.

Hutchinson, Neil, Davies, Mark S., Ng, Jasmine S.S., and Williams, Gray A. (2007) Trail following behaviour in relation to pedal mucus production in the intertidal gastropod Monodonta labio (Linnaeus). Journal of Experimental Marine Biology and Ecology, 349 (2). pp. 313-322.

Huggett, Megan J., Williamson, Jane E., de Nys, Rocky, Kjelleberg, Staffan, and Steinberg, Peter D. (2006) Larval settlement of the common Australian sea urchin Heliocidaris erythrogramma in response to bacteria from the surface of coralline algae. Oecologia, 149 (4). pp. 604-619.

Hoogenboom, Mia O., Anthony, Kenneth R.N., and Connolly, Sean R. (2006) Energetic cost of photoinhibition in corals. Marine Ecology Progress Series, 313. pp. 1-12.

Hutchinson, Neil, Nagarkar, Sanjay, Aitchison, Jonathan C., and Williams, Gray A. (2006) Microspatial variation in marine biofilm abundance on intertidal rock surfaces. Aquatic Microbial Ecology, 42 (2). pp. 187-197.

Heupel, Michelle R., Simpfendorfer, Colin A., Collins, Angela B., and Tyminski, John P. (2006) Residency and movement patterns of bonnethead sharks, Sphyrna tiburo, in a large Florida estuary. Environmental Biology of Fishes, 76. pp. 47-67.

Holley, David K., Lawler, Ivan R., and Gales, Nicholas J. (2006) Summer survey of dugong distribution and abundance in Shark Bay reveals additional key habitat area. Wildlife Research, 33 (3). pp. 243-250.

Hixon, Mark A., and Jones, Geoffrey P. (2005) Competition, predation, and density-dependent mortality in demersal marine fishes. Ecology, 86 (11). pp. 2847-2859.

Hughes, Terence P., Bellwood, David R., Folke, Carl, Steneck, Robert S., and Wilson, James (2005) New paradigms for supporting the resilience of marine ecosystems. Trends in Ecology and Evolution, 20 (7). pp. 380-386.

Hernaman, V., and Munday, P.L. (2005) Life-history characteristics of coral reef gobies. I. Growth and life-span. Marine Ecology Progress Series, 290. pp. 207-221.

Hernaman, V., and Munday, P.L. (2005) Life-history characteristics of coral reef gobies. II. Mortality rate, mating system and timing of maturation. Marine Ecology Progress Series, 290. pp. 223-237.

Heupel, M. R., and Simpfendorfer, C. A. (2005) Quantitative analysis of aggregation behaviour in juvenile blacktip sharks. Marine Biology, 147 (5). pp. 1239-1249.

Harrington, Lindsay, Fabricius, Katharina, Eaglesham, Geoff, and Negri, Andrew (2005) Synergistic effects of diuron and sedimentation on photosynthesis and survival of crustose coralline algae. Marine Pollution Bulletin, 51 (1-4). pp. 415-427.

Hobbs, Jean-Paul A., Munday, Philip L., and Jones, Geoffrey P. (2004) Social induction of maturation and sex determination in a coral reef fish. Proceedings of the Royal Society of London Series B: biological sciences, 271 (1553). pp. 2109-2114.

Heupel, Michelle R., Simpfendorfer, Colin A., and Hueter, Robert E. (2004) Estimation of shark home ranges using passive monitoring techniques. Environmental Biology of Fishes, 71 (2). pp. 135-142.

Hobbs, J.-P., and Munday, P.L. (2004) Intraspecific competition controls spatial distribution and social organisation of the coral-dwelling goby Gobiodon histrio. Marine Ecology Progress Series, 278. pp. 253-259.

Hoey, Andrew S., and McCormick, Mark I. (2004) Selective predation for low body condition at the larval-juvenile transition of a coral reef fish. Oecologia, 139 (1). pp. 23-29.

Hodgson, Amanda Jane (2004) Dugong behaviour and responses to human influences. PhD thesis, James Cook University.

Harrington, Lindsay Mortan (2004) Ecology of crustose coralline algae; interactions with scleractinian corals and responses to environmental conditions. PhD thesis, James Cook University.

Hueter, R.E., Heupel, M.R., Heist, E.J., and Keeney, D.B. (2004) The implications of philopatry in sharks for the management of shark fisheries. Journal of Northwest Atlantic Fishery Science , 35. pp. 239-247.

Hughes, T.P., Baird, A.H., Bellwood, D.R., Connolly, S.R., Folke, C., Grosberg, R., Hoegh-Guldberg, O., Jackson, J.B.C., Kleypas, J., Lough, J.M., Marshall, P., Nyström, M., Palumbi, S.R., Pandolfi, J.M., Rosen, B., and Roughgarden, J. (2003) Response to Causes of coral reef degradation [Aronson et al. (2003) Causes of coral reef degradation]. Science, 302 (5650). pp. 1503-1504.

Harding, Jeffery A., Almany, Glenn, Houck, Lynne D., and Hixon, Mark A. (2003) Experimental analysis of monogamy in the Caribbean cleaner goby, Gobiosoma evelynae. Animal Behaviour, 65 (5). pp. 865-874.

Hughes, Terry (2003) Biogeographic comparisons of coral faunas. Oceanus, 29 (3-4). pp. 291-301.

Heupel, M.R., Simpfendorfer, C.A., and Hueter, R.E. (2003) Running before the storm: blacktip sharks respond to falling barometric pressure associated with Tropical Storm Gabrielle. Journal of Fish Biology, 63 (5). pp. 1357-1363.

Hoegh-Guldberg, Ove, Jones, Ross J, Ward, Selina, and Loh, William K (2002) Is coral bleaching really adaptive? Nature, 415 (6872). pp. 601-602.

Hughes, Terry P., Bellwood, David R., and Connolly, Sean R. (2002) Biodiversity hotspots, centres of endemicity, and the conservation of coral reefs. Ecology Letters, 5 (6). pp. 775-784.

Haine, Olivia S., Ridd, Peter V., and Rowe, Richard J. (2001) Range of electrosensory detection of prey by Carcharhinus melanopterus and Himantura granulata. Marine and Freshwater Research, 52 (3). pp. 291-296.

Hughes, Terrence (2001) The collapse of a coral reef: Jamaica. In: Talbot, Frank, and Wilkinson, Clive, (eds.) Coral Reefs, Mangroves and Seagrasses: a sourcebook for managers. Australian Institute of Marine Science, Townsville, QLD, Australia, pp. 99-101.

Horne, Michelle L. (2001) A new seahorse species (Syngnathidae: Hippocampus) from the Great Barrier Reef. Records of the Australian Museum, 53 (2). pp. 243-246.

Hughes, Terence P., and Tanner, Jason E. (2000) Recruitment failure, life histories, and long-term decline of Caribbean corals. Ecology, 81 (8). pp. 2250-2263.

Hughes, T. P., Baird, A. H., Dinsdale, E. A., Moltschaniwskyj, N. A., Pratchett, M. S., Tanner, J. E., and Willis, B. L. (2000) Supply-side ecology works both ways: the link between benthic adults, fecundity, and larval recruits. Ecology, 81 (8). pp. 2241-2249.

Hughes, Terry P. (2000) Geology and ecology of coral reefs: book review of "Reef Evolution" by Rachel Wood, 1999, Oxford University Press. Trends in Ecology & Evolution, 15 (3). p. 125.

Hughes, T.P., Cornell, H.V., Caley, M.J., Karlson, R.H., Wallace, C.C., and Wolstenholme, J. (2000) Local and regional patterns in the community structure of corals. In: Abstracts of the Ninth International Coral Reef Symposium. p. 5. From: 9th International Coral Reef Symposium: World Coral Reefs in the New Millenium, 23-27 October 2000, Bali, Indonesia.

Hernaman, V., Munday, P.L., and Schläppy, M. (2000) Validation of otolith growth-increment periodicity in tropical gobies. Marine Biology, 137 (4). pp. 715-726.

Hughes, T.P., Baird, A.H., Dinsdale, E.A., Moltschaniwskyj, Natalie, Pratchett, M.S., Tanner, J.E., and Willis, B.L. (1999) Patterns of recruitment and abundance of corals along the Great Barrier Reef. Nature, 397. pp. 59-63.

Hughes, Terry, Szmant, Alina M., Steneck, Robert, Carpenter, Robert, and Miller, Steven (1999) Algal blooms on coral reefs: what are the causes? Limnology and Oceanography, 44 (6). pp. 1583-1586.

Hughes, T.P., and Connell, J.H. (1999) Multiple stressors on coral reefs: a long-term perspective. Limnology and Oceanography, 44 (3). pp. 932-940.

Hughes, T.P. (1999) Off-reef transport of coral fragments at Lizard Island, Australia. Marine Geology, 157 (1-2). pp. 1-6.

Hall, Vicki R (1998) Injury and regeneration of reef-crest corals at Lizard Island, Great Barrier Reef, Australia. PhD thesis, James Cook University.

Hilomen, Vincent Velarde (1997) Inter- and intra-habitat movement patterns and population dynamics of small reef fishes of commercial and recreational significance. PhD thesis, James Cook University of North Queensland.

Hughes, Terence P. (1996) Demographic approaches to community dynamics: a coral reef example. Ecology, 77 (7). pp. 2256-2260.

Hall, V.R., and Hughes, T.P. (1996) Reproductive strategies of modular organisms: comparative studies of reef-building corals. Ecology, 77 (3). pp. 950-963.

Hodgson, Gregor, Ogden, John C., and Hughes, Terrence P. (1994) Coral-reef catastrophe. Science, 266 (5193). pp. 1930-1933.

Hughes, Terrence P. (1994) Catastrophes, phase-shifts, and large-scale degradation of a Caribbean coral-reef. Science, 265 (5178). pp. 1547-1551.

Hunt, Marina J. (1994) Effects of enhanced climate change and sea level rise on shallow-water reef corals: an experimantal analysis of coral demographic and photophysiological responses to depth changes. PhD thesis, James Cook University of North Queensland.

Hoedt, Frank Edward (1994) A comparative study of the habitats, growth and reproduction of eight species of tropical anchovy from Cleveland and Bowling Green Bays, North Queensland. PhD thesis, James Cook University.

Hughes, Terrence P. (1993) Coral reef degradation: a long-term study of human and natural impacts. In: Ginsburg, Robert N., (ed.) Proceedings of the Colloquium on Global Aspects of Coral Reefs: health, hazards and history. University of Miami Press, Miami, Florida, USA, pp. 208-213.

Hughes, Terry (1993) Preface. Coral Reefs, 12 (3-4). p. 115.

Hughes, Terence P., Ayre, David, and Connell, Joseph H. (1992) The evolutionary ecology of corals. Trends in Ecology and Evolution, 7 (9). pp. 292-295.

Hughes, Terence P. (1990) Recruitment limitation, mortality, and population regulation in open systems: a case-study. Ecology, 71 (1). pp. 12-20.

Hughes, Terence P. (1989) Community structure and diversity of coral reefs: the role of history. Ecology, 70 (1). pp. 275-279.

Hughes, T.P. (1988) Long-term dynamics of coral populations: contrasting reproductive modes. In: Choat, J.H., Barnes, D., Borowitzka, M.A., Coll, J.C., Davies, P.J., Flood, P., Hatcher, B.G., Hopley, D., Hutchings, P.A., Kinsey, D., Orme, G.R., Pichon, M., Sale, P..F, Sammarco, P., Wallace, C.C., Wilkinson, C., Wolanski, E., and Bellwood, O., (eds.) Proceedings of the 6th International Coral Reef Symposium. International Society for Reef Studies, Townsville, QLD, Australia, pp. 721-725.

Hughes, Terence P. (1987) Skeletal density and growth form of corals. Marine Ecology Progress Series, 35 (3). pp. 259-266.

Heyward, Andrew John (1987) Genetic systems and hereditary structures of reef corals. PhD thesis, James Cook University.

Hughes, Terence P., Reed, Daniel C., and Boyle, Mary-Jo (1987) Herbivory on coral reefs: community structure following mass mortalities of sea urchins. Journal of Experimental Marine Biology and Ecology, 113 (1). pp. 39-59.

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Munroe, Samantha Elizabeth Mitchell (2015) Habitat and dietary selectivity of nearshore shark populations. PhD thesis, James Cook University.

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Machin, James (2015) Mangrove restoration, a case for an evidence based approach. PhD thesis, James Cook University.

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Mackenzie, Jock, Duke, Norman, Baba, Karin, Wood, Apanie, Rogers, Britt, Haller, Alex, and O'Mara, Julian (2011) MangroveWatch Burnett Mary region is one year old: outcomes and lessons learned. Wetlands Australia, National Wetlands Update, 19. pp. 26-27.

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McCook, L.J., Almany, G.R., Berumen, M.L., Day, J.C., Green, A.L., Jones, G.P., Leis, J.M., Planes, S., Russ, G.R., Sale, P.F., and Thorrold, S.R. (2009) Management under uncertainty: guide-lines for incorporating connectivity into the protection of coral reefs. Coral Reefs, 28 (2). pp. 353-366.

Maes, G.E., van Vo, B., Crivelli, A.J., and Volckaert, F.A.M. (2009) Morphological and genetic seasonal dynamics of European eel Anguilla anguilla recruitment in southern France. Journal of Fish Biology, 74 (9). pp. 2047-2068.

Meyer, Eli, Aglyamova, Galina V., Wang, Shi, Buchanan-Carter, Jade, Abrego, David, Colbourne, John K., Willis, Bette L., and Matz, Mikhail V. (2009) Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx. BMC Genomics, 10 (219). pp. 1-18.

McCormick, Mark I. (2009) Indirect effects of heterospecific interactions on progeny size through maternal stress. Oikos, 118 (5). pp. 744-752.

Munday, Philip L., Dixson, Danielle L., Donelson, Jennifer M., Jones, Geoffrey P., Pratchett, Morgan S., Devitsina, Galina V., and Døving, Kjell B. (2009) Ocean acidification impairs olfactory discrimination and homing ability of a marine fish. Proceedings of the National Academy of Sciences of the United States of America, 106 (6). pp. 1848-1852.

MacNeil, M. Aaron, Graham, Nicholas A.J., Polunin, Nicholas V.C., Kulbicki, Michel, Galzin, Rene, Harmelin-Vivien, Mireille, and Rushton, Steven P. (2009) Hierarchical drivers of reef-fish metacommunity structure. Ecology, 90 (1). pp. 252-264.

McCormick, M.I., and Gagliano, M. (2009) Carry-over effects - the importance of a good start. In: Proceedings of the 11th International Coral Reef Symposium, Ft. Lauderdale, Florida, July 2008. From: 11th International Coral Reef Symposium 2008, 07 July - 11 July 2008, Fort Lauderdale, FL, USA.

McClanahan, T.R., Weil, E., Cortés, J., Baird, A.H., and Ateweberhan, M. (2009) Consequences of coral bleaching for sessile reef organisms. In: van Oppen , M. J. H. , and Lough, J. M. , (eds.) Coral Bleaching: patterns, processes, causes and consequences. Ecological Studies, 205 . Springer, Berlin, Germany, pp. 121-138.

Magnusson, Marie (2009) Effects of priority herbicides and their breakdown products on tropical, estuarine microalgae of the Great Barrier Reef Lagoon. PhD thesis, James Cook University.

Meyer, Eli, Davies, Sarah, Wang, Shi, Willis, Bette L., Abrego, David, Juenger, Thomas E., and Matz, Mikhail V. (2009) Genetic variation in responses to a settlement cue and elevated temperature in the reef-building coral Acropora millepora. Marine Ecology Progress Series, 392. pp. 81-92.

Munday, P. L., Ryen, C.A., McCormick, M. I., and Walker, S.P.W. (2009) Growth acceleration, behaviour and otolith check marks associated with sex change in the wrasse Halichoeres miniatus. Coral Reefs, 28 (3). pp. 623-634.

Munday, Philip L., Cheal, Alistair J., Graham, Nicholas A.J., Meekan, Mark, Pratchett, Morgan S., Sheaves, Marcus, Sweatman, Hugh, and Wilson, Shaun K. (2009) Tropical coastal fish. Report Section. National Climate Change Adaptation Research Plans.

Miller-Sims, V.C., Gerlach, G., Kingsford, M.J., and Atema, J. (2008) Dispersal in the spiny damselfish, Acanthochromis polyacanthus, a coral reef fish species without a larval pelagic stage. Molecular Ecology, 17 (23). pp. 5036-5048.

MacNeil, M.A., Graham, N.A.J., Conroy, M.J., Fonnesbeck, C.J., Polunin, N.V.C., Rushton, S.P., Chabanet, P., and McClanahan, T.R. (2008) Detection heterogeneity in underwater visual-census data. Journal of Fish Biology, 73 (7). pp. 1748-1763.

Madin, Joshua S., O'Donnell, Michael J., and Connolly, Sean R. (2008) Climate-mediated mechanical changes to post-disturbance coral assemblages. Biology Letters, 4 (5). pp. 490-493.

Munday, Philip L., Jones, Geoffrey P., Pratchett, Morgan S., and Williams, Ashley J. (2008) Climate change and the future for coral reef fishes. Fish and Fisheries, 9 (3). pp. 261-285.

Mapleston, Amos, Welch, David, Begg, Gavin A., McLennan, Mark, Mayer, David, and Brown, Ian (2008) Effect of changes in hook pattern and size on catch rate, hooking location, injury and bleeding for a number of tropical reef fish species. Fisheries Research, 91 (2-3). pp. 203-211.

McCormick, Mark I., and Larson, Johan K. (2008) Effect of hunger on the response to, and the production of, chemical alarm cues in a coral reef fish. Animal Behaviour, 75 (6). pp. 1973-1980.

Milione, Michael, and Zeng, Chaoshu (2008) The effects of temperature and salinity on population growth and egg hatching success of the tropical calanoid copepod, Acartia sinjiensis. Aquaculture, 275 (1-4). pp. 116-123.

Maynard, Jeff A., Turner, Peter, Anthony, Kenneth R.N., Baird, Andrew H., Berkelmans, Ray, Eakin, C. Mark, Johnson, Johanna, Marshall, Paul A., Packer, Gareck R., Rea, Anthony, and Willis, Bette L. (2008) ReefTemp: an interactive monitoring system for coral bleaching using high-resolution SST and improved stress predictors. Geophysical Research Letters, 35. pp. 1-5.

McCormick, M. I., and Manassa, R. (2008) Predation risk assessment by olfactory and visual cues in a coral reef fish. Coral Reefs, 27 (1). pp. 105-113.

Majdi bin Pehin Dato Hj Abdul Aziz, Muhammad, Purwati, Sri Unon, Zainuddin, Norazma Binti, Demonstrator, Aung Aye Latt, Cabading, Vilma T., Cruz, Renato T., Rivera, Marcelino N., Rajaram, Indrani C., Wainipee, Wimolporn, Nga, Pham Thuy, and Anh, Tran Thi Le (2008) ASEAN Marine Water Quality: Monitoring Manual. Manual. Association of Southeast Asian Nations (ASEAN), Jakarta, Indonesia.

Munday, P. L., Kingsford, M.J., O'Callaghan, M., and Donelson, J.M. (2008) Elevated temperature restricts growth potential of the coral reef fish Acanthochromis polyacanthus. Coral Reefs, 27 (4). pp. 927-931.

Meynecke, J-O., Lee, S.Y., and Duke, N.C. (2008) Linking spatial metrics and fish catch reveals the importance of coastal wetland connectivity to inshore fisheries in Queensland, Australia. Biological Conservation, 141 (4). pp. 981-996.

Maynard, J.A., Baird, A.H., and Pratchett, M.S. (2008) Revisiting the Cassandra syndrome; the changing climate of coral reef research. Coral Reefs, 27. pp. 745-749.

Morote, Elvira, Olivar, M. Pilar, Pankhurst, Patricia M., Villate, Fernando, and Uriarte, Ibon (2008) Trophic ecology of bullet tuna Auxis rochei larvae and ontogeny of feeding-related organs. Marine Ecology Progress Series, 353. pp. 243-254.

Murray, Nicholas J., and Trebilco, Rowan (2008) An influx of Australian Shelducks Tadorna tadornoides on Macquarie Island. Australian Field Ornithology, 25 (1). pp. 40-41.

Mantyka, Chrystal S., and Bellwood, David R. (2007) Macroalgal grazing selectivity among herbivorous coral reef fishes. Marine Ecology Progress Series, 352. pp. 177-185.

Myers, Trina, Atkinson, Ian, and Maynard, Jeff (2007) The Semantic Reef: an eco-informatics approach for modelling coral bleaching within the Great Barrier Reef. In: Proceedings of ERE Environmental Research Event: global problems, local solutions. From: 11th Annual Environmental Postgraduate Conference - Environmental Research Event, 2-5 Dec 2007, Cairns, QLD, Australia.

McCormick, M.I., and Larson, J.K. (2007) Field verification of the use of chemical alarm cues in a coral reef fish. Coral Reefs, 26 (3). pp. 571-576.

McClanahan, T.R., Ateweberhan, M., Sebastian, C. Ruiz, Graham, N. A. J., Wilson, S., Bruggemann, J., and Guillaume, M. (2007) Predictability of coral bleaching from synoptic satellite and in situ temperature observations. Coral Reefs, 26 (3). pp. 695-701.

Mantyka, C.S., and Bellwood, D.R. (2007) Direct evaluation of macroalgal removal by herbivorous coral reef fishes. Coral Reefs, 26 (2). pp. 435-442.

McCormick, Mark I., and Meekan, Mark G. (2007) Social facilitation of selective mortality. Ecology, 88 (6). pp. 1562-1570.

McClanahan, Tim R., Graham, Nicholas A.J., Calnan, Jacqulyn M., and MacNeil, M. Aaron (2007) Towards pristine biomass: reef fish recovery in coral reef marine protected areas in Kenya. Ecological Applications, 17 (4). pp. 1055-1067.

McClanahan , T.R., Ateweberhan, M., Graham, N. A. J., Wilson, S.K., Sebastian, C. Ruiz, Guillaume, M.M.M., and Bruggemann, J.H. (2007) Western Indian Ocean coral communities: bleaching responses and susceptibility to extinction. Marine Ecology Progress Series, 337. pp. 1-13.

Meynecke, Jan-Olaf, Lee, Shing Yip, Duke, Norman C., and Warnken, Jan (2007) Relationships between estuarine habitats and coastal fisheries in Queensland, Australia. Bulletin of Marine Science, 80 (3). pp. 773-793.

Mangubhai, S., Harris, A., and Graham, N.A.J. (2007) Synchronous daytime spawning of the solitary coral Fungia danai (Fungiidae) in the Chagos Archipelago, central Indian Ocean. Coral Reefs, 26 (1). p. 15.

Maes, Gregory E., and Volckaert, Filip A.M. (2007) Challenges for genetic research in European eel management. ICES Journal of Marine Science, 64 (7). pp. 1463-1471.

McCook, Laurence J., Folke, Carl, Hughes, Terry, Nyström, Magnus, Obura, David, and Salm, Rodney (2007) Ecological resilience, climate change, and the Great Barrier Reef. In: Johnson, Joanna E., and Marshall, Paul A., (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority, Townsville, Qld, Australia, pp. 75-96.

Munday, Philip L., Jones, Geoffrey P., Sheaves, Marcus, Williams, Ashley, and Goby, Gillian (2007) Vulnerability of fishes of the Great Barrier Reef to climate change. In: Johnson, Johanna E., and Marshall, Paul A., (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority and Australian Greenhouse Office, Townsville, QLD, Australia, pp. 357-391.

McClanahan, T.R., Graham, N.A.J., Maina, J., Chabanet, P., Bruggemann, J.H., and Polunin, N.V.C. (2007) The influence of instantaneous variation on estimates of coral reef fish populations and communities. Marine Ecology Progress Series, 340. pp. 221-234.

McCormick, Mark I. (2007) A little stress goes a long way: parental stress and population replenishment. In: Connell, Sean D., and Gillanders, Bronwyn M., (eds.) Marine Ecology. Oxford University Press, South Melbourne, VIC, Australia, p. 353.

Munday, Philip L., White, J. Wilson, and Warner, Robert R. (2006) A social basis for the development of primary males in a sex-changing fish. Proceedings of the Royal Society of London Series B: biological sciences, 273 (1603). pp. 2845-2851.

Marriott, Ross J., and Mapstone, Bruce D. (2006) Consequences of inappropriate criteria for accepting age estimates from otoliths, with a case study for a long-lived tropical reef fish. Canadian Journal of Fisheries and Aquatic Sciences, 63 (10). pp. 2259-2274.

McCormick, Mark (2006) Distress a normal part of life for a damsel. Australasian Science, 27. pp. 29-31.

Munday, Philip L., Cardoni, Adrian M., and Syms, Craig (2006) Cooperative growth regulation in coral dwelling fishes. Biology Letters, 2 (3). pp. 355-358.

Marriott, Ross J., and Mapstone, Bruce D. (2006) Geographic influences on and the accuracy and precision of age estimates for the red bass, Lutjanus bohar (Forsskal 1775): a large tropical reef fish. Fisheries Research, 80 (2-3). pp. 322-328.

Muehlig-Hofmann, Annette, Veitayaki, Joeli, Polunin, Nicholas V.C., Stead, Selina, and Graham, Nicholas (2006) Community-based marine resource management in Fiji – from yesterday to tomorrow. In: Proceedings of the 10th International Coral Reef Symposium 2004 (1) pp. 1259-1266. From: 10th International Coral Reef Symposium 2004, 28 June - 2 July 2004, Okinawa, Japan.

Munday, Philip L., Buston, Peter M., and Warner, Robert R. (2006) Diversity and flexibility of sex-change strategies in animals. Trends in Ecology and Evolution, 21 (2). pp. 89-95.

Meynecke, Jan-Olaf, Lee, Shing Yip, Duke, Norman, and Warnken, Jan (2006) Effect of rainfall as a component of climate change on estuarine fish production in Queensland, Australia. Estuarine, Coastal and Shelf Science , 69 (3-4). pp. 491-504.

McAuley, Rory B., Simpfendorfer, Colin A., Hyndes, Glenn .A., Allison, Rick R., Chidlow, Justin A., Newman, Stephen J., and Lenanton, Rod C.J. (2006) Validated age and growth of the sandbar shark, Carcharhinus plumbeus (Nardo, 1827) in the waters of Western Australia. Environmental Biology of Fishes, 77. pp. 385-400.

Miller-Sims, Vanessa, Delaney, Martha, Atema, Jelle, Kingsford, Michael, and Gerlach, Gabriele (2005) DNA microsatellites in Acanthochromis polyacanthus. Molecular Ecology Resources, 5 (4). pp. 841-843.

McCormack, Catherine (2005) Ecological Assessment of the Queensland Coral Fishery: a report to the Australian Government Department of the Environment and Heritage on the ecologically sustainable management of the Queensland Coral Fishery. Report. Queensland Department of Primary Industries and Fisheries, Brisbane, QLD, Australia.

Messmer, Vanessa, Jones, Geoffrey P., van Herwerden, Lynne, and Munday, Philip L. (2005) Genetic and ecological characterisation of colour dimorphism in a coral reef fish. Environmental Biology of Fishes, 74 (2). pp. 175-183.

Moland, Even, Eagle, Janelle V., and Jones, Geoffrey P. (2005) Ecology and evolution of mimicry in coral reef fishes. In: Gibson, R.N., Atkinson, R.J.A., and Gordon, J.D.M., (eds.) Oceanography and Marine Biology: an annual review. Taylor & Francis, Boca Raton, FL, USA, pp. 455-482.

McClanahan, T.R., and Graham, N. A. J. (2005) Recovery trajectories of coral reef fish assemblages within Kenyan marine protected areas. Marine Ecology Progress Series, 294. pp. 241-248.

Marsh, Helene, De'Ath, Glenn, Gribble, Neil, and Lane, Baden (2005) Historical marine population estimates: triggers or targets for conservation? The dugong case study. Ecological Applications, 15 (2). pp. 481-492.

McMahon, Kathryn, Bengston-Nash, Susan, Eaglesham, Geoff, Müller, Jochen F., Duke, Norman C., and Winderlich, Steve (2005) Herbicide contamination and the potential impact to seagrass meadows in Hervey Bay, Queensland, Australia. Marine Pollution Bulletin, 51 (1-4). pp. 325-334.

Madin, Joshua S. (2005) Mechanical limitations of reef corals during hydrodynamic disturbances. Coral Reefs, 24 (4). pp. 630-635.

Messmer, Vanessa, van Herwerden, Lynne, Munday, Philip L., and Jones, Geoffrey P. (2005) Phylogeography of colour polymorphism in the coral reef fish Pseudochromis fuscus, from Papua New Guinea and the Great Barrier Reef. Coral Reefs, 24. pp. 392-402.

Miller, Dean Kevin (2005) Towards sustainable wildlife tourism experiences for certified scuba divers on coral reefs. PhD thesis, James Cook University.

Moothien Pillay, Ruby , Willis, Bette, and Terashima, Hiroaki (2005) Trends in the density of zooxanthellae in Acropora millepora (Ehrenberg, 1834) at the Palm Island Group, Great Barrier Reef, Australia. Symbiosis, 38. pp. 209-226.

Mellors, Jane, Waycott, Michelle, and Marsh, Helene (2005) Variation in biogeochemical parameters across intertidal seagrass meadows in the central Great Barrier Reef region. Marine Pollution Bulletin, 51 (1). pp. 335-342.

Munday, Philip L. (2004) Habitat loss, resource specialization, and extinction on coral reefs. Global Change Biology, 10 (10). pp. 1642-1647.

Miller-Sims, Vanessa, Atema, Jelle, Kingsford, Michael J., and Gerlach, Gabrielle (2004) Characterization and isolation of DNA microsatellite primers in the cardinalfish (Apogon doederleini). Molecular Ecology Resources, 4 (3). pp. 336-338.

Munday, Philip L., van Herwerden, Lynne, and Dudgeon, Christine L. (2004) Evidence for sympatric speciation by host shift in the sea. Current Biology, 14 (16). pp. 1498-1504.

Moland, Even, and Jones, Geoffrey P. (2004) Experimental confirmation of aggressive mimicry by a coral reef fish. Oecologia, 140 (4). pp. 676-683.

McCormick, Mark I., and Hoey, Andrew S. (2004) Larval growth history determines juvenile growth and survival in a tropical marine fish. Oikos, 106 (2). pp. 225-242.

Munday, Philip L. (2004) Competitive coexistence of coral-dwelling fishes: the lottery hypothesis revisited. Ecology, 85 (3). pp. 623-628.

Munday, Philip L., Parker, Alyson L., Choat, J. Howard, and Gust, Nick (2004) Sex-specific growth effects in protogynous hermaphrodites. Canadian Journal of Fisheries and Aquatic Sciences, 61 (3). pp. 323-327.

Madin, Joshua Simon (2004) A mechanistic approach to understanding and predicting hydrodynamic disturbance on coral reefs. PhD thesis, James Cook University.

Munday, Philip L., Eyre, Peter J., and Jones, Geoffrey P. (2003) Ecological mechanisms for coexistence of colour polymorphism in a coral-reef fish: an experimental evaluation. Oecologia, 137 (4). pp. 519-526.

Munday, P.L., Schubert, M., Baggio, J.A., Jones, G.P., Caley, M.J., and Grutter, A.S. (2003) Skin toxins and external parasitism of coral-dwelling gobies. Journal of Fish Biology, 62 (4). pp. 976-981.

Mellors, Jane Elizabeth (2003) Sediment and nutrient dynamics in coastal intertidal seagrass of north eastern tropical Australia. PhD thesis, James Cook University.

Marsh, Helene, Arnold, Peter , Freeman, Milton, Haynes, David, Laist, David, Read, Andrew , Reynolds, John , and Kasuya, Toshio (2003) Strategies for conserving marine mammals. In: Gales, Nick, Hindell, Mark, and Kirkwood, Roger, (eds.) Marine Mammals: fisheries, tourism and management issues. CSIRO Publishing, Collingwood, VIC, Australia, pp. 1-19.

Macia, A, Abrantes, K.G.S., and Paula, J. (2003) Thorn fish Terapon jarbua (Forskål) predation on juvenile white shrimp Penaeus indicus H. Milne Edwards and brown shrimp Metapenaeus monoceros (Fabricius): the effect of turbidity, prey density, substrate type and pneumatophore density. Journal of Experimental Marine Biology and Ecology, 291 (1). pp. 29-56.

Marsh, Helene, Penrose, Helen, and Eros, Carole (2003) A future for the dugong. In: Gales, Nick, Hindell, Mark, and Kirkwood, Roger, (eds.) Marine Mammals: fisheries, tourism and management issues. CSIRO Publishing, Collingwood, VIC, Australia, pp. 383-399.

Meekan, M.G., Ackerman, J.L., and Wellington, G.M. (2001) Demography and age structures of coral reef damselfishes in the tropical eastern Pacific Ocean. Marine Ecology-Progress Series, 212. pp. 223-232.

Molony, Brett W., and Sheaves, Marcus J. (2001) Challenges of external insemination in a tropical sparid fish, Acanthopagrus berda. Environmental Biology of Fishes, 61 (1). pp. 65-71.

McCook, L.J., Jompa, J., and Diaz-Pulido, G. (2001) Competition between corals and algae on coral reefs: a review of evidence and mechanisms. Coral Reefs, 19 (4). pp. 400-417.

Munday, Philip L. (2001) Fitness consequences of habitat use and competition among coral-dwelling fishes. Oecologia, 128 (4). pp. 585-593.

Michalek-Wagner, K., and Willis, B.L. (2001) Impacts of bleaching on the soft coral Lobophytum compactum. I. Fecundity, fertilization and offspring viability. Coral Reefs, 19 (3). pp. 231-239.

Michalek-Wagner, K., and Willis, B.L. (2001) Impacts of bleaching on the soft coral Lobophytum compactum. II. Biochemical changes in adults and their eggs. Coral Reefs, 19 (3). pp. 240-246.

Munday, Philip L., Jones, Geoffrey P., and Caley, M. Julian (2001) Interspecific competition and coexistence in a guild of coral-dwelling fishes. Ecology, 82 (8). pp. 2177-2189.

Michalek-Wagner, K. (2001) Seasonal and sex-specific variations in levels of photo-protecting mycosporine-like amino acids (MAAs) in soft corals. Marine Biology, 139 (4). pp. 651-660.

Michalek-Wagner, K., Bourne, D.J., and Bowden, B.F. (2001) The effects of different strains of zooxanthellae on the secondary-metabolite chemistry and development of the soft-coral host Lobophytum compactum. Marine Biology, 138 (4). pp. 753-760.

Marnane, Michael John (2001) The trophic role of cardinalfishes (family Apogonidae) on coral reefs. PhD thesis, James Cook University.

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Marshall, P.A., and Baird, A.H. (2000) Bleaching of corals on the Great Barrier Reef: differential susceptibilities among taxa. Coral Reefs, 19 (2). pp. 155-163.

Munday, Philip L. (2000) Changing sex. Nature Australia, 26 (11). pp. 51-60.

Michalek-Wagner, Kirsten, and Bowden, Bruce F. (2000) Effects of bleaching on secondary metabolite chemistry of alcyonacean soft corals. Journal of Chemical Ecology, 26 (7). pp. 1543-1562.

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Nay, Tiffany (2019) Temperature preferences of tropical fishes and the influence of local abiotic and biotic factors. PhD thesis, James Cook University.

Nowicki, Jessica Ploetz (2017) Neural and ecological basis of pair bonding in butterflyfishes (F: Chaetodontidae). PhD thesis, James Cook University.

Nicolet, Katia Jane (2017) Vectors and environmental drivers of coral disease dynamics on the Great Barrier Reef. PhD thesis, James Cook University.

Nadler, Lauren Elizabeth (2016) Behavioural and physiological effects of shoaling in a coral reef fish. PhD thesis, James Cook University.

Nay, Tiffany J., Johansen, Jacob L., Habary, Adam, Steffensen, John F., and Rummer, Jodie L. (2015) Behavioural thermoregulation in a temperature-sensitive coral reef fish, the five-lined cardinalfish (Cheilodipterus quinquelineatus). Coral Reefs, 34 (4). pp. 1261-1265.

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Nash, Kirsty L. (2014) Assessment of scale dependent function in reef fish, and application to the evaluation of coral reef resilience. PhD thesis, James Cook University.

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Pratchett, M.S., Blowes, S.A., Coker, D., Kubacki, E., Nowicki, J., and Hoey, A.S. (2015) Indirect benefits of high coral cover for non-corallivorous butterflyfishes. Coral Reefs, 34 (2). pp. 665-672.

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Pernice, M., Schliep, M., Szabo, M., Rasheed, M., Bryant, C., York, P., Chartrand, K., Petrou, K., and Ralph, P. (2015) Development of a molecular biology tool kit to monitor dredging-related light stress in the seagrass Zostera muelleri ssp. capricorni in Port Curtis. Report. TropWATER, Cairns, QLD, Australia.

Pratchett, Morgan S., Wilson, Shaun K., and Munday, Philip L. (2015) Effects of climate change on coral reef fishes. In: Mora, Camilo, (ed.) Ecology of Fishes on Coral Reefs. Cambridge University Press, Cambridge, UK, pp. 127-134.

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Pratchett, Morgan S., Anderson, Kristen D., Hoogenboom, Mia O., Windman, Elizabeth, Baird, Andrew H., Pandolfi, John M., Edmunds, Peter J., and Lough, Janice M. (2015) Spatial, temporal and taxonomic variation in coral growth: implications for the structure and function of coral reef ecosystems. Oceanography and Marine Biology, 53. pp. 215-295.

Pisapia, Chiara (2015) Spatial, temporal and taxonomic variation in the incidence of partial mortality among reef-building corals. PhD thesis, James Cook University.

Pratchett, Morgan S., Hoey, Andrew S., Cvitanovic, Christopher, Hobbs, Jean-Paul, and Fulton, Christopher J. (2014) Abundance, diversity, and feeding behavior of coral reef butterflyfishes at Lord Howe Island. Ecology and Evolution, 4 (18). pp. 3612-3625.

Pollock, F. Joseph, Lamb, Joleah B., Field, Stuart N., Heron, Scott F., Schaffelke, Britta, Shedrawi, George, Bourne, David G., and Willis, Bette L. (2014) Sediment and turbidity associated with offshore dredging increase coral disease prevalence on nearby reefs. PLoS ONE, 9 (7). e102498. pp. 1-9.

Pujolar, J.M., Jacobsen, M.W., Als, T.D., Frydenberg, J., Munch, K., Jónsson, B., Jian, J.B., Cheng, L., Maes, G.E., Bernatchez, L., and Hansen, M.M. (2014) Genome-wide single-generation signatures of local selection in the panmictic European eel. Molecular Ecology, 23 (10). pp. 2514-2528.

Poulos, Davina E., and McCormick, Mark I. (2014) Who wins in the battle for space? The importance of priority, behavioural history and size. Animal Behaviour, 90. pp. 305-314.

Pratchett, Morgan S., Berumen, Michael L., and Kapoor, B.G. (2014) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA.

Pratchett, Morgan S., Chong-Seng, Karen M., Feary, David A., Hoey, Andrew S., Fulton, Christopher J., Nowicki, Jessica P., Dewan, Adam K., Walker, Stefan P.W., and Berumen, Michael L. (2014) Butterflyfishes as a model group for reef fish ecology: important and emerging research topics. In: Pratchett , Morgan S., Berumen , Michael L., and Kapoor , B.G., (eds.) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA, pp. 310-333.

Paley, Allison Susanna (2014) Colour polymorphism and its role in stress tolerance in the coral Acropora millepora on the Great Barrier Reef. PhD thesis, James Cook University.

Pratchett, Morgan S. (2014) Feeding preferences and dietary specialisation among obligate coral-feeding butterflyfishes. In: Pratchett, Morgan S., Berumen, Michael L., and Kapoor, B.G., (eds.) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA, pp. 140-179.

Palacios, M.M., Muñoz, C.G., and Zapata, F.A. (2014) Fish corallivory on a pocilloporid reef and experimental coral responses to predation. Coral Reefs, 33 (3). pp. 625-636.

Pisapia, Chiara, Anderson, Kristen, and Pratchett, Morgan S. (2014) Intraspecific variation in physiological condition of reef-building corals associated with differential levels of chronic disturbance. PLoS ONE, 9 (3). e9152. pp. 1-8.

Pratchett, Morgan S., Caballes, Ciemon F., Rivera-Posada, Jairo A., and Sweatman, Hugh P.A. (2014) Limits to understanding and managing outbreaks of crown-of-thorns starfish (Acanthaster spp.). Oceanography and Marine Biology, 52. pp. 133-200.

Pellissier, Loïc, Leprieur, Fabien, Parravicini, Valeriano, Cowman, Peter F., Kulbicki, Michel, Litsios, Glenn, Olsen, Steffen M., Wisz, Mary S., Bellwood, David R., and Mouillot, David (2014) Quaternary coral reef refugia preserved fish diversity. Science, 344 (6187). pp. 1016-1019.

Parsons, D.M., Sim-Smith, C.J., Cryer, M., Francis, M.P., Hartill, B., Jones, E.G., Le Port, A., Lowe, M., McKenzie, J., Morrison, M., Paul, L.J., Radford, C., Ross, P.M., Spong, K.T., Trnski, T., Usmar, N., Walsh, C., and Zeldis, J. (2014) Snapper (Chrysophrys auratus): a review of life history and key vulnerabilities in New Zealand. New Zealand Journal of Marine and Freshwater Research, 48 (2). pp. 256-283.

Paris, Claire B., Atema, Jelle, Irisson, Jean-Olivier, Kingsford, Michael, Gerlach, Gabriele, and Guigand, Cedric M. (2013) Reef odor: a wake up call for navigation in reef fish larvae. PLoS ONE, 8 (8). e72808. pp. 1-8.

Ponton, D., Carassou, L., Raillard, S., and Borsa, P. (2013) Geometric morphometrics as a tool for identifying emperor fish (Lethrinidae) larvae and juveniles. Journal of Fish Biology, 83 (1). pp. 14-27.

Poulakis, Gregg R., Stevens, Philip W., Timmers, Amy A., Stafford, Christopher J., and Simpfendorfer, Colin A. (2013) Movements of juvenile endangered smalltooth sawfish, Pristis pectinata, in an estuarine river system: use of non-main-stem river habitats and lagged responses to freshwater inflow-related changes. Environmental Biology of Fishes, 96 (6). pp. 763-778.

Pereira, P.H.C., and Ferreira, B.P. (2013) Effects of life phase and schooling patterns on the foraging behaviour of coral-reef fishes from the genus Haemulon. Journal of Fish Biology, 82 (4). pp. 1226-1238.

Pratchett, M.S., Graham, N.A.J., and Cole, A.J. (2013) Specialist corallivores dominate butterflyfish assemblages in coral-dominated reef habitats. Journal of Fish Biology, 82 (4). pp. 1177-1191.

Pereira, Pedro H.C., Feitosa, João L.L., Medeiros, Diego V., and Ferreira, Beatrice P. (2013) Reef fishes foraging facilitation behavior: increasing the access to a food resource. Acta Ethologica, 16 (1). pp. 53-56.

Pratchett, M.S., Pisapia, C., and Sheppard, C.R.C. (2013) Background mortality rates for recovering populations of Acropora cytherea in the Chagos Archipelago, central Indian Ocean. Marine Environmental Research, 86. pp. 29-34.

Pratchett, Morgan S., McCowan, Dominique, Maynard, Jeffrey A., and Heron, Scott (2013) Changes in bleaching susceptibility among corals subject to ocean warming and recurrent bleaching in Moorea, French Polynesia. PLoS ONE, 8 (7). e70443. pp. 1-10.

Pollock, F.J., Katz, S.M., Bourne, D.G., and Willis, B.L. (2013) Cymo melanodactylus crabs slow progression of white syndrome lesions on corals. Coral Reefs, 32 (1). pp. 43-48.

Pratchett, Morgan S., Hoey, Andrew S., Feary, David A., Bauman, Andrew G., Burt, John A., and Riegl, Bernhard M. (2013) Functional composition of Chaetodon butterflyfishes at a peripheral and extreme coral reef location, the Persian Gulf. Marine Pollution Bulletin, 72 (2). pp. 333-341.

Parravicini, V., Kulbicki, M., Bellwood, D.R., Friedlander, A.M., Arias-Gonzalez, J.E., Chabanet, P., Floeter, S.R, Myers, R., Vigliola, L., D'Agata, S., and Mouillot, D. (2013) Global patterns and predictors of tropical reef fish species richness. Ecography, 36 (12). pp. 1254-1262.

Puill-Stephan, E., Willis, B.L., Abrego, D., Raina, J-B., and van Oppen, M.J.H. (2012) Allorecognition maturation in the broadcast-spawning coral Acropora millepora. Coral Reefs, 31 (4). pp. 1019-1028.

Palmer, C. V., Graham, E., and Baird, A. H. (2012) Immunity through early development of coral larvae. Developmental and Comparative Immunology, 38 (2). 395-399.

Palmer, C.V., Bythell, J.C., and Willis, B.L. (2012) Enzyme activity demonstrates multiple pathways of innate immunity in Indo-Pacific anthozoans. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1743). pp. 3879-3887.

Pratchett, Morgan S., Coker, Darren J., Jones, Geoffrey P., and Munday, Philip L. (2012) Specialization in habitat use by coral reef damselfishes and their susceptibility to habitat loss. Ecology and Evolution, 2 (9). pp. 2168-2180.

Pratchett, Morgan S., Bay, Line K., Coker, Darren J., Cole, Andrew J., and Lawton, Rebecca J. (2012) Effects of coral bleaching on coral habitats and associated fishes. In: Lunney, Daniel, and Hutchings, Pat, (eds.) Wildlife and Climate Change: towards robust conservation strategies for Australian fauna. RZS Forum Series . Royal Zoological Society New South Wales, Sydney, NSW, pp. 59-67.

Pisapia, C., Hennige, S.J., Haapkylä, J., Matteucci, R., and Smith, D.J. (2012) Morphological changes in polyp structure of massive coral species in clear and turbid waters. Bulletin of Marine Science, 88 (1). pp. 183-191.

Paley, Allison S., and Bay, Line K. (2012) Bleaching condition varies among Acropora millepora color morphs. In: Proceedings of the 12th International Coral Reef Symposium. 9A_9. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Pisapia, Chiara, Cole, Andrew J., and Pratchett, Morgan S. (2012) Changing feeding preferences of butterflyfishes following coral bleaching. In: Proceedings of the 12th International Coral Reef Symposium. 13C_2. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Pratchett, Morgan, Hoey, Andrew, Coker, Darren, and Gardiner, Naomi (2012) Interdependence between reef fishes and scleractinian corals. In: Proceedings of the 12th International Coral Reef Symposium. 13C_3. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Pereira, Pedro H.C., Feitosa, João L.L., Chaves, Laís C.T., and de Araújo, Maria E. (2012) Reef fish foraging associations: "nuclear-follower" behavior or an ephemeral interaction? In: Proceedings of the 12th International Coral Reef Symposium. 13B_2. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Palmer, C.V., and Traylor-Knowles, N. (2012) Towards an integrated network of coral immune mechanisms. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1745). pp. 4106-4114.

Pandolfi, John, Connolly, Sean, Marshall, Dustin J., and Cohern, Anne L. (2011) The future of coral reefs - a response. Science, 334 (6062). pp. 1495-1496.

Pollock, F. Joseph, Morris, Pamela J., Willis, Bette L., and Bourne, David G. (2011) The urgent need for robust coral disease diagnostics. PLoS Pathogens, 7 (10). e1002183. pp. 1-10.

Palmer, C.V., Bythell, J.C., and Willis, B.L. (2011) A comparative study of phenoloxidase activity in diseased and bleached colonies of the coral Acropora millepora. Developmental and Comparative Immunology, 35 (10). pp. 1098-1101.

Pankhurst, Ned, and Munday, Philip (2011) Effects of climate change on fish reproduction and early life history stages. Marine and Freshwater Research, 62 (9). pp. 1015-1026.

Palmer, Caroline V., Traylor-Knowles, Nikki G., Willis, Bette L., and Bythell, John C. (2011) Corals use similar immune cells and wound-healing processes as those of higher organisms. PLoS ONE, 6 (8). e23992. pp. 1-11.

Pratchett, Morgan S., Hoey, Andrew S., Wilson, Shaun K., Messmer, Vanessa, and Graham, Nicholas A.J. (2011) Changes in biodiversity and functioning of reef fish assemblages following coral bleaching and coral loss. Diversity, 3 (3). pp. 424-452.

Prado, Patricia, Collier, Catherine J., Romero, Javier, and Alcoverro, Teresa (2011) Distinctive types of leaf tissue damage influence nutrient supply to growing tissues within seagrass shoots. Marine Biology, 158 (7). pp. 1473-1482.

Penin, Lucie, Michonneau, François, Carroll, Andrew, and Adjeroud, Mehdi (2011) Effects of predators and grazers exclusion on early post-settlement coral mortality. Hydrobiologia, 663 (1). pp. 259-264.

Pratchett, M.S., Trapon, M., Berumen, M.L., and Chong-Seng, K. (2011) Recent disturbances augment community shifts in coral assemblages in Moorea, French Polynesia. Coral Reefs, 30 (1). pp. 183-193.

Post, Alexandra L., Beaman, Robin J., O'Brien, Philip E., Eléaume, Marc, and Riddle, Martin J. (2011) Community structure and benthic habitats across the George V Shelf, East Antarctica: trends through space and time. Deep-sea Research. Part II: topical studies in oceanography, 58 (1-2). pp. 105-118.

Pratchett, Morgan S., Bay, Line, Gehrke, Peter C., Koehn, John D., Osborne, Kate, Pressey, Robert L., Sweatman, Hugh P.A., and Wachenfeld, David (2011) Contribution of climate change to degradation and loss of critical fish habitats in Australian marine and freshwater environments. Marine and Freshwater Research, 62 (9). pp. 1062-1081.

Palmer, Caroline V., McGinty, Elizabeth S., Cummings, David J., Smith, Stephanie M., Bartels, Erich, and Mydlarz, Laura D. (2011) Patterns of coral ecological immunology: variation in the responses of Caribbean corals to elevated temperature and a pathogen elicitor. Journal of Experimental Biology, 214 (24). pp. 4240-4249.

Pratchett, Morgan S., Munday, Philip L., Graham, Nicholas A.J., Kronen, Mecki, Pinca, Silvia, Friedman, Kim, Brewer, Tom D., Bell, Johann D., Wilson, Shaun K., Cinner, Joshua E., Kinch, Jeff P., Lawton, Rebecca J., Williams, Ashley J., Chapman, Lindsay, Magron, Franck, and Webb, Arthur (2011) Vulnerability of coastal fisheries in the tropical Pacific to climate change. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, New Caledonia, pp. 493-576.

Pratchett, M.S., Graham, N.A.J., Sheppard, C.R.C., and Mayes, B. (2010) Are infestations of Cymo melanodactylus killing Acropora cytherea in the Chagos archipelago? Coral Reefs, 29 (4). p. 941.

Pollnac, Richard, Christie, Patrick, Cinner, Joshua E., Dalton, Tracey, Daw, Tim M., Forrester, Graham E., Graham, Nicholas A.J., and McClanahan, Timothy R. (2010) Marine reserves as linked social–ecological systems. Proceedings of the National Academy of Sciences, 107 (43). pp. 18262-18265.

Price, Samantha A., Wainwright, Peter C., Bellwood, David R., Kazancioglu, Erem, Collar, David C., and Near, Thomas J. (2010) Functional innovations and morphological diversification in parrotfish. Evolution, 64 (10). pp. 3057-3068.

Pratchett, M.S. (2010) Changes in coral assemblages during an outbreak of Acanthaster planci at Lizard Island, northern Great Barrier Reef (1995-1999). Coral Reefs, 29 (3). pp. 717-725.

Pollock, F. Joseph, Morris, Pamela J., Willis, Bette L., and Bourne, David G. (2010) Detection and quantification of the coral pathogen vibrio coralliilyticus by real-time PCR with TaqMan fluorescent probes. Applied and Environmental Microbiology, 76 (15). pp. 5282-5286.

Penin, Lucie, Michonneau, François, Baird, Andrew H., Connolly, Sean R., Pratchett, Morgan S., Kayal, Mohsen, and Adjeroud, Mehdi (2010) Early post-settlement mortality and the structure of coral assemblages. Marine Ecology Progress Series, 408. pp. 55-64.

Palmer, Caroline V., Bythell, John C., and Willis, Bette L. (2010) Levels of immunity parameters underpin bleaching and disease susceptibility of reef corals. FASEB Journal, 24 (6). pp. 1935-1946.

Polidoro, Beth A., Carpenter, Kent E., Collins, Lorna, Duke, Norman C., Ellison, Aaron M., Ellison, Joanna C., Farnsworth, Elizabeth J., Fernando, Edwino S., Kathiresan, Kandasamy, Koedam, Nico E., Livingstone, Suzanne, Miyagi, Toyohiko, Moore, Gregg E., Nam, Vien Ngoc, Ong, Jin Eong, Primavera, Jurgenne H., Salmo, Severino G., Sanciangco, Jonnell C., Sukardjo, Sukristijono, Wang, Yamin, and Hong Yong, Jean Wan (2010) The loss of species: mangrove extinction risk and geographic areas of global concern. PLoS ONE, 5 (4). e10095. pp. 1-10.

Pollock, F. Joseph, Wilson, Bryan, Johnson, Wesley R., Morris, Pamela J., Willis, Bette L., and Bourne, David G. (2010) Phylogeny of the coral pathogen Vibrio coralliilyticus. Environmental Microbiology Reports, 2 (1). pp. 172-178.

Puill-Stephan, Eneour (2010) Chimerism and allorecognition in the broadcast spawning coral Acropora millepora on the Great Barrier Reef. PhD thesis, James Cook University.

Planas, M., Quintas, P., Chamorro, A., and Silva, C. (2010) Female maturation, egg characteristics and fatty acids profile in the seahorse Hippocampus guttulatus. Animal Reproduction Science, 122. pp. 66-73.

Pratchett, M.S., Schenk, T.J., Baine, M., Syms, C., and Baird, A.H. (2009) Selective coral mortality associated with outbreaks of Acanthaster planci L. in Bootless Bay, Papua New Guinea. Marine Environmental Research, 67 (4-5). pp. 230-236.

Planes, Serge, Jones, Geoffrey P., and Thorrold, Simon R. (2009) Larval dispersal connects fish populations in a network of marine protected areas. Proceedings of the National Academy of Sciences, 106 (14). pp. 5693-5697.

Palmer, Caroline V., Roth, Melissa S., and Gates, Ruth D. (2009) Red fluorescent protein responsible for pigmentation in Trematode-infected Porites compressa tissues. Biological Bulletin, 216 (1). pp. 68-74.

Paris, C.B., Aldana-Aranda, D., Perez-Perez, M., and Kool, J. (2009) Connectivity of Queen conch, Strombus gigas, populations from Mexico. In: Proceedings of the 11th International Coral Reef Symposium. pp. 439-443. From: 11th International Coral Reef Symposium, 7-11 July 2008, Fort Lauderdale, Florida, USA.

Pratchett, M.S., Wilson, S.K., Graham, N.A.J., Munday, P.L., Jones, G.P., and Polunin, N.V.C. (2009) Coral bleaching and consequences for motile reef organisms: past, present and uncertain future effects. In: van Oppen, M.J.H., and Lough, J.M., (eds.) Coral Bleaching: patterns, processes, causes and consequences. Ecological Studies, 205 . Springer, Germany, pp. 139-158.

Palmer, Caroline V., Modi, Chintan K., and Mydlarz, Laura D. (2009) Coral fluorescent proteins as antioxidants. PLoS ONE, 4 (10). p. 7298.

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Sheaves, Marcus, and Johnston, Ross (2010) Implications of spatial variability of fish assemblages for monitoring of Australia’s tropical estuaries. Aquatic Conservation: marine and freshwater ecosystems , 20 (3). pp. 348-356.

Sato, Yui, Willis, Bette L., and Bourne, David G. (2010) Successional changes in bacterial communities during the development of black band disease on the reef coral, Montipora hispida. ISME Journal, 4 (2). pp. 203-214.

Salmo, Severino G., and Duke, Norman C. (2010) Establishing mollusk colonization and assemblage patterns in planted mangrove stands of different ages in Lingayen Gulf, Philippines. Wetlands Ecology and Management, 18 (6). pp. 745-754.

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Sabetian, Armagan (2010) Parrotfish fisheries and population dynamics: a case-study from Solomon Islands. PhD thesis, James Cook University.

Sale, P.F., Van Lavieren, H., Ablan Lagman, M.C., Atema, J., Butler, M., Fauvelot, C., Hogan, J.D., Jones, G.P., Lindeman, K.C., Paris, C.B., Steneck, R., and Stewart, H.L. (2010) Preserving Reef Connectivity: a Handbook for Marine Protected Area Managers. Report. Coral Reef Targeted Research &Capacity Building for Management Project (CRTR).

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Sato, Yui, Bourne, David G., and Willis, Bette L. (2009) Dynamics of seasonal outbreaks of black band disease in an assemblage of Montipora species at Pelorus Island (Great Barrier Reef, Australia). Proceedings of the Royal Society of London Series B, 276. pp. 2795-2803.

Sheaves, Marcus, and Johnston, Ross (2009) Ecological drivers of spatial variability among fish fauna of 21 tropical Australian estuaries. Marine Ecology Progress Series, 385. pp. 245-260.

Steneck, R.S., Paris, C.B., Arnold, S.N., Ablan-Lagman, M.C., Alcala, A.C., Butler, M.J., McCook, L.J., Russ, G.R., and Sale, P.F. (2009) Thinking and managing outside the box: coalescing connectivity networks to build region-wide resilience in coral reef ecosystems. Coral Reefs, 28 (2). pp. 367-378.

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Sussman, Meir, Mieog, Jos C., Doyle, Jason R., Victor, Steven, Willis, Bette L., and Bourne, David G. (2009) Vibrio Zinc-Metalloprotease causes photoinactivation of coral endosymbionts and coral tissue lesions. PLoS ONE, 4 (2). p. 4511.

Sheppard, James K., Jones, Rhondda E., Marsh, Helene, and Lawler, Ivan R . (2009) Effects of tidal and diel cycles on dugong habitat use. Journal of Wildlife Management, 73 (1). pp. 45-59.

Sheaves, Marcus (2009) Consequences of ecological connectivity: the coastal ecosystem mosaic. Marine Ecology Progress Series, 391. pp. 107-115.

Simpfendorfer, Colin A., and Kyne, Peter M. (2009) Limited potential to recover from overfishing raises concerns for deep-sea sharks, rays and chimaeras. Environmental Conservation, 36. pp. 97-103.

Sheaves, Marcus, Duc, Nguyen Huu , and Khoa, Nguyen Xuan (2008) Ecological attributes of a tropical river basin vulnerable to the impacts of clustered hydropower developments. Marine and Freshwater Research, 59 (11). pp. 971-986.

Steneck, Robert H., Bustamante, Rodrigo H., Dayton, Paul K., Jones, Geoffrey P., and Hobday, Alistair J. (2008) Current status and future trends in kelp forest ecosystems. In: Polunin, Nicholas V.C., (ed.) Aquatic Ecosystems: trends and global prospects. Cambridge University Press, Cambridge, UK, pp. 226-241.

Sofonia, Jeremy J., and Anthony, Kenneth R.N. (2008) High-sediment tolerance in the reef coral Turbinaria mesenterina from the inner Great Barrier Reef lagoon (Australia). Estuarine, Coastal and Shelf Science , 78 (4). pp. 748-752.

Sussman, Meir, Willis, Bette L., Victor, Steven, and Bourne, David G. (2008) Coral pathogens identified for white syndrome (WS) epizootics in the Indo-Pacific. Public Library of Science ONE , 3 (6). pp. 1-14.

Sheaves, Marcus, and Johnston, Ross (2008) Influence of marine and freshwater connectivity on the dynamics of subtropical estuarine wetland fish metapopulations. Marine Ecology Progress Series, 357. pp. 225-243.

Simpfendorfer, Colin Ashley, Heupel, Michelle RaNae, and Collins, Angela B. (2008) Variation in the performance of acoustic receivers and its implication for positioning algorithms in a riverine setting. Canadian Journal of Fisheries and Aquatic Sciences, 65 (3). pp. 482-492.

Scheffer, Marten, van Nes, Egbert H., Holmgren, Milena, and Hughes, Terry (2008) Pulse-driven loss of top-down control: the critical-rate hypothesis. Ecosystems, 11 (2). pp. 226-237.

Srinivas, V. , Baird, Andrew, Kerr, Alexander, and Ram, Sunita (2008) Coastal Bio-shields and their Putative Role During Large Weather Related Disturbance Events IN: Bhalla, R.S, Ram, Sunita and Srinivas, V. (eds) Studies on Vulnerability and Habitat Restoration along the Coromandel Coast. Report Section. FERAL, UNDP-UNTRS, Pondicherry, India .

Simpfendorfer, C. A., Poulakis, G. R., O'Donnell, P. M, and Wiley, T. R. (2008) Growth rates of juvenile smalltooth sawfish Pristis pectinata Latham in the western Atlantic. Journal of Fish Biology, 72 (3). pp. 711-723.

Sheppard, James K. (2008) The spatial ecology of dugongs: applications to conservation management. PhD thesis, James Cook University.

Short, F., Carruthers, T., Dennison, W., and Waycott, M. (2007) Global seagrass distribution and diversity: a bioregional model. Journal of Experimental Marine Biology and Ecology, 350 (1-2). pp. 3-20.

Sheaves, Marcus, Johnston, Ross, and Abrantes, Kátya (2007) Fish fauna of dry tropical and subtropical estuarine floodplain wetlands. Marine and Freshwater Research, 58 (10). pp. 931-943.

Sheaves, Marcus, Abrantes, Katya, and Johnston, Ross (2007) Nursery ground value of an endangered wetland to juvenile shrimps. Wetlands Ecology and Management, 15 (4). pp. 311-327.

Sampey, A., McKinnon, A.D., Meekan, M.G., and McCormick, M.I. (2007) Glimpse into guts: overview of the feeding of larvae of tropical shorefishes. Marine Ecology Progress Series, 339. pp. 243-257.

Sheaves, Marcus, Connolly, Rod, and Johnston, Ross (2007) Assessment of Techniques for Determining the Health of Tropical Estuarine Ecosystems. Report. Marine and Tropical Sciences Research Facility, Cairns. (Unpublished)

Sheaves, Marcus, Johnston, Ross, Molony, Brett, and Shephard, Greg (2007) The effect of impoundments on the structure and function of fish fauna in a highly regulated dry tropics estuary. Estuaries and Coasts, 30 (3). pp. 507-517.

Sheppard, James K., Lawler, Ivan R ., and Marsh, Helene (2007) Seagrass as pasture for seacows: landscape-level dugong habitat evaluation. Estuarine, Coastal and Shelf Science , 71 (1-2). pp. 117-132.

Sheaves, Marcus, Brodie, Jon, Brooke, Brendan, Dale, Pat, Lovelock, Catherine, Waycott, Michelle, Gehrke, Peter, Johnston, Ross, and Baker, Ronald (2007) Vulnerability of coastal and estuarine habitats in the GBR to climate change. In: Johnson, Johanna E., and Marshall, Paul A., (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority and the Australian Greenhouse Office, Townsville, QLD, Australia, pp. 593-620.

Smith-Keune, C., Jerry, D.R., Evans, B.S., McCormick, M.I., Munday, P.L., and Jones, G.P. (2006) Development and characterization of eight new microsatellite markers for the haremic sandperch, Parapercis cylindrica (family Pinguipedidae). Molecular Ecology Resources, 6 (4). pp. 1036-1038.

Srinivasan, M., and Jones, G.P. (2006) Extended breeding and recruitment periods of fishes on a low latitude coral reef. Coral Reefs, 25 (4). pp. 673-682.

Sheaves, Marcus (2006) Is the timing of spawning in sparid fishes a response to sea temperature regimes? Coral Reefs, 25 (4). pp. 655-669.

Sheaves, Marcus, Baker, Ronnie, and Johnston, Ross (2006) Marine nurseries and effective juvenile habitats: an alternative view. Marine Ecology Progress Series , 318. pp. 303-306.

Sheaves, Marcus, Collins, John, Houston, Wayne, Dale, Pat, Revill, Andrew, Johnston, Ross, and Abrantes, Katya (2006) Contribution of floodplain wetland pools to the ecological functioning of the Fitzroy River Estuary. Report. Cooperative Research Centre for Coastal Zone, Estuary and Waterway Management, Brisbane, QLD, Australia.

Salih, Anya, Cox, Guy, Szymczak, Ron, Coles, Steve, Baird, Andrew, Dunstan, Andy, Cocco, Giordana, Mills, Jacqui, and Larkum, Anthony (2006) The role of host-based color and fluorescent pigments in photoprotection and in reducing bleaching stress in corals. In: Proceedings of 10th International Coral Reef Symposium. pp. 746-756. From: 10th International Coral Reef Symposium, 28 June - 2 July, 2004, Okinawa, Japan.

Sheaves, Marcus (2006) Scale-dependent variation in composition of fish fauna among sandy tropical estuarine embayments. Marine Ecology Progress Series, 310. pp. 173-184.

Smyth, Danielle J., Glanfield, Amber, McManus, Donald P., Hacker, Elke, Blair, David, Anderson, Greg J., and Jones, Malcolm K. (2006) Two Isoforms of a Divalent Metal Transporter (DMT1) in Schistosoma mansoni Suggest a Surface-associated Pathway for Iron Absorption in Schistosomes. Journal of Biological Chemistry, 281 (4). pp. 2242-2248.

Selig, Elizabeth R., Harvell, C. Drew, Bruno, John F., Willis, Bette L., Page, Cathie A., Casey, Kenneth S., and Sweatman, Hugh (2006) Analyzing the relationship between ocean temperature anomalies and coral disease outbreaks at broad spatial scales. In: Phinney, Jonathan T., Hoegh-Guldberg, Ove, Kleypas, Joanie, Skirving, William, and Strong, A.l., (eds.) Coral Reefs and Climate Change: Science and Management. Coastal and Estuarine Studies 61 . American Geophysical Union, Washington, DC, pp. 111-128.

Scardino, Andrew J. (2006) Biomimetic fouling control. PhD thesis, James Cook University.

Sampey, Alison (2006) Distributions and diets of the larvae of tropical shorefishes near the northwest cape of Australia. Masters (Research) thesis, James Cook University.

Sims, David W., Wearmouth, Victoria J., Southall, Emily J., Hill, Jaqueline M., Moore, Pippa, Rawlinson, Kate, Hutchinson, Neil, Budd, Georgina C., Righton, Dave, Metcalfe, Julian, Nash, Jon, and Morritt, David (2006) Hunt warm, rest cool: bioenergetic strategy underlying diel vertical migration of a benthic shark. Journal of Animal Ecology, 75 (1). pp. 176-190.

Srinivasan, Maya (2006) Recruitment in time and space: the dynamics and distributions of reef fish populations on a low latitude coral reef. PhD thesis, James Cook University.

Sofonia, Jeremy (2006) Sediment responses of corals from inshore reefs, Great Barrier Reef, Australia. Masters (Research) thesis, James Cook University.

Stead, S.M., Daw, T., Graham, N.A.J., Gray, T.S., Polunin, N.V.C., Robinson, J., and McClanahan, T.R. (2006) Trends in climate change, coastal governance, coral reef ecology and socio-economic variation in the Seychelles. In: World Martitime Technology Conference 2006 (1) From: World Maritime Technology Conference, 08 March 2006, Westminster, London, UK.

Schaffelke, Britta, and Deane, David (2005) Desiccation tolerance of the introduced marine green alga Codium fragile ssp. Tomentosoides - clues for likely transport vectors. Biological Invasions, 7 (4). pp. 577-587.

Simpfendorfer, Colin A. (2005) Threatened fishes of the world: Pristis pectinata Latham, 1794 (Pristidae). Environmental Biology of Fishes, 73 (1). p. 20.

Sale, Peter F., Cowen, Robert K., Danilowicz, Bret S., Jones, Geoffrey P., Kritzer, Jacob P., Lindeman, Kenyon C., Planes, Serge, Polunin, Nicholas V.C., Russ, Garry R., Sadovy, Yvonne J., and Steneck, Robert S. (2005) Critical science gaps impede use of no-take fishery reserves. Trends in Ecology & Evolution, 20 (2). pp. 74-80.

Simpfendorfer, Colin A., Freitas, Garin G., Wiley, Tonya R., and Heupel, Michelle R. (2005) Distribution and habitat partitioning of immature bull sharks (Carcharhinus leucas) in a southwest Florida estuary. Estuaries, 28 (1). pp. 76-83.

Sheaves, Marcus (2005) Nature and consequences of biological connectivity in mangroves systems. Marine Ecology Progress Series, 302. pp. 293-305.

Sims, D.W., Southall, E.J., Waermouth, V.J., Hutchinson, N., Budd, G.C., and Morritt, D. (2005) Refuging behaviour in the nursehound Scyliorhinus stellaris (Chondrichthyes: Elasmobranchii): preliminary evidence from acoustic telemetry. Journal of the Marine Biological Association of the United Kingdom, 85. pp. 1137-1140.

Smith, Luke Darren (2005) Resilience and recovery of coral communities on an isolated reef system in Western Australia following a catastrophic mortality event. PhD thesis, James Cook University.

Schaffelke, Britta, Mellors, Jane, and Duke, Norman C. (2005) Water quality in the Great Barrier Reef region: responses of mangrove, seagrass and macroalgal communities. Marine Pollution Bulletin, 51 (1-4). pp. 279-296.

Smith, Shawn, and McCormick, Mark I. (2004) Efficacy of passive integrated transponder tags to determine spawning-site visitations by a tropical fish. Coral Reefs, 23 (4). pp. 570-577.

Schaffelke, Britta, Heimann, Kirsten, Marshall, Paul A, and Ayling, A.M. (2004) Blooms of Chrysocystis fragilis on the Great Barrier Reef. Coral Reefs, 23 (4). p. 514.

Sampey, A., Meekan, M.G., Carleton, J.H., McKinnon, A.D., and McCormick, M.I. (2004) Temporal patterns in distributions of tropical fish larvae on the North West Shelf of Australia. Marine and Freshwater Research, 55 (5). pp. 473-487.

Swanson, Rebecca L., Williamson, Jane E., de Nys, Rocky, Kumar, Naresh, Bucknall, Martin P., and Steinberg, Peter D. (2004) Induction of settlement of larvae of the sea urchin Holopneustes purpurascens by histamine from a host alga. Biological Bulletin, 206 (3). pp. 161-172.

Syms, Craig, and Jones, Geoffrey P. (2004) Habitat structure, disturbance and the composition of sand-dwelling goby assemblages in a coral reef lagoon. Marine Ecology Progress Series, 268. pp. 221-230.

Schubert, Melissa, Munday, Philip L., Caley, M. Julian, Jones, Geoffrey P., and Llewellyn, Lyndon E. (2003) The toxicity of skin secretions from coral-dwelling gobies and their potential role as a predator deterrent. Environmental Biology of Fishes, 67 (2). pp. 359-367.

Saveh Doroudi, Mehdi S., and Southgate, Paul C. (2003) Embryonic and larval development of Pinctada margaritifera (Linnaeus, 1758). Molluscan Research, 23 (2). pp. 101-107.

Si, Aung, Bellwood, O., and Alexander, C.G. (2002) Evidence for filter-feeding by the wood-boring isopod, Sphaeroma terebrans (Crustacea: Peracarida). Journal of Zoology, 256 (4). pp. 463-471.

Sheaves, Marcus (2001) Are there really few piscivorous fishes in shallow estuarine habitats? Marine Ecology-Progress Series, 222. pp. 279-290.

Stewart, B.D., and Jones, G.P. (2001) Associations between the abundance of piscivorous fishes and their prey on coral reefs: implications for prey-fish mortality. Marine Biology, 138 (2). pp. 383-397.

Schulz, Melissa K., and Alexander, C.G. (2001) Aggressive behaviour of Caprella Scaura Typica Mayer, 1890. (Crustacea: Amphipoda). Marine and Freshwater Behaviour and Physiology, 34 (3). pp. 181-187.

Sheaves, Marcus, and Molony, Brett (2001) Coherent patterns of abundance and size of a tropical snapper in dynamic estuary systems. Wetlands Ecology and Management, 9 (5). pp. 429-439.

Syms, Craig, and Jones, Geoffrey P. (2001) Soft corals exert no direct effects on coral reef fish assemblages. Oecologia, 127 (4). pp. 560-571.

St John, Jill, Russ, Gary R., Brown, Ian W., and Squire, Lyle C. (2001) The diet of the large coral reef serranid Plectropomus leopardus in two fishing zones on the Great Barrier Reef, Australia. Fishery Bulletin, 99 (1). pp. 180-192.

Sheaves, Marcus, and Molony, Brett (2000) Short-circuit in the mangrove food chain. Marine Ecology Progress Series, 199. pp. 97-109.

Stewart, Bryce D., and Beukers, Joanne S. (2000) Baited technique improves censuses of cryptic fish in complex habitats. Marine Ecology-Progress Series, 197. pp. 259-272.

Semmens, Jayson M., and Moltschaniwskyj, Natalie A. (2000) An examination of variable growth in the loliginid squid Sepioteuthis lessoniana: a whole animal and reductionist approach. Marine Ecology-Progress Series, 193. pp. 135-141.

Samoilys, Melita A., and Roelofs, Anthony (2000) Defining the reproductive biology of a large serranid Plectropomus leopardus. Report. CRC Reef Research Centre, Townsville, QLD, Australia.

Samoilys, Melita A., and Carlos, Gary (2000) Determining methods of underwater visual census for estimating the abundance of coral reef fishes. Environmental Biology of Fishes, 57 (3). pp. 289-304.

Syms, Craig, and Jones, Geoffrey P. (2000) Disturbance, habitat structure, and the dynamics of a coral-reef fish community. Ecology, 81 (10). pp. 2714-2729.

Si, Aung, Alexander, C.G., and Bellwood, O. (2000) Habitat partitioning by two wood-boring invertebrates in a mangrove system in tropical Australia. Journal of the Marine Biological Association of the United Kingdom, 80 (6). pp. 1131-1132.

Samoilys, Melita Anne (2000) Reproductive dynamics of an exploited serranid on the Great Barrier Reef. PhD thesis, James Cook University.

Stobart, Ben (2000) A taxonomic reappraisal of Montipora digitata based on genetic and morphometric evidence. Zoological Studies, 39 (3). pp. 179-190.

Stump, R.J.W., and Lucas, J.S. (1999) Age estimation and patterns of growth in Acanthaster planci: a reply to Souter et al. (1997). Marine and Freshwater Research, 50 (1). pp. 71-72.

Sheaves, M.J., Molony, B.W., and Tobin, A.J. (1999) Spawning migrations and local movements of a tropical sparid fish. Marine Biology, 133 (1). pp. 123-128.

Smith, L.D., and Hughes, T.P. (1999) An experimental assessment of survival, re-attachment and fecundity of coral fragments. Journal of Experimental Marine Biology and Ecology, 235 (1). pp. 147-164.

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Syms, Craig (1998) Habitat association, disturbance dynamics, and the role of spatial scale in structuring coral reef fish assemblages. PhD thesis, James Cook University.

Sheaves, Marcus (1998) Spatial patterns in estuarine fish faunas in tropical Queensland: a reflection of interaction between long-term physical and biological processes? Marine and Freshwater Research, 49 (1). pp. 31-40.

Samoilys, Melita A. (1997) Periodicity of spawning aggregations of coral trout Plectropomus leopardus (Pisces: Serranidae) on the northern Great Barrier Reef. Marine Ecology Progress Series, 160. pp. 149-159.

Sheaves, Marcus (1996) Do spatial differences in the abundance of two serranid fishes in estuaries of tropical Australia reflect long-term salinity patterns? Marine Ecology Progress Series, 137. pp. 39-49.

Sheaves, M.J. (1996) Habitat-specific distributions of some fishes in a tropical estuary. Marine and Freshwater Research, 47 (6). pp. 827-830.

Sheaves, Marcus John (1995) Effect of design modifications and soak time variations on Antillean-Z fish trap performance in a tropical estuary. Bulletin of Marine Science, 56 (2). pp. 475-489.

Sheaves, Marcus John (1995) Estuaries as juvenile habitats for lutjanid and serranid fishes in tropical northeastern Australia. PhD thesis, James Cook University.

Sheaves, Marcus (1995) Large lutjanid and serranid fishes in tropical estuaries: are they adults or juveniles? Marine Ecology Progress Series, 129. pp. 31-40.

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Shelley, C.C. (1988) Growth rates of Hippopus hippopus from Orpheus Island, Great Barrier Reef. In: Copland, J.W., and Lucas, J.S., (eds.) Giant Clams in Asia and the Pacific. ACIAR Monograph Series, 9 . Australian Centre for International Agricultural Research, Canberra, ACT, Australia, pp. 207-212.

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Thibaut, Loïc (2015) Population regulation and diversity-stability relationships in ecological time-series. PhD thesis, James Cook University.

Thomson, Alexandra C.G., York, Paul H., Smith, Timothy M., Sherman, Craig D.H., Booth, David J., Keough, Michael J., Ross, D. Jeff, and Macreadie, Peter I. (2015) Seagrass viviparous propagules as a potential long-distance dispersal mechanism. Estuaries and Coasts, 38. pp. 927-940.

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Trave, Claudia, and Sheaves, Marcus (2014) Bimini Islands: a characterization of the two major nursery areas; status and perspectives. SpringerPlus, 3. 270. pp. 1-9.

Trave, Claudia, and Sheaves, Marcus (2014) Ecotone analysis: assessing the impact of vehicle transit on saltmarsh crab population and ecosystem. SpringerPlus, 3 (1). 655. pp. 1-9.

Torda, G., Lundgren, P., Willis, B.L., and van Oppen, M.J.H. (2013) Genetic assignment of recruits reveals short- and long-distance larval dispersal in Pocillopora damicornis on the Great Barrier Reef. Molecular Ecology, 22 (23). pp. 5821-5834.

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Trapon, Melanie Lea (2013) Variation in early post-settlement growth and mortality of scleractinian corals. PhD thesis, James Cook University.

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Usobiaga Fabian, Alejandro (2017) The ecological state and fishing practices of coral reefs in South Buton. Masters (Research) thesis, James Cook University.

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Vermeiren, Peter, and Sheaves, Marcus (2015) Predictable habitat associations of four crab species across the low intertidal landscape of a tropical estuary over time. Estuaries and Coasts, 38 (1). pp. 285-295.

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Vermeiren, Peter, and Sheaves, Marcus (2015) Modeling intertidal crab distribution patterns using photographic mapping among tropical Australian estuaries. Estuaries and Coasts, 38 (5). pp. 1545-1556.

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van de Water, Johannes A.J.M. (2014) Corals under stress: a study of the coral innate immune system. PhD thesis, James Cook University.

Vermeiren, Peter, and Sheaves, Marcus (2014) Predicting habitat associations of five intertidal crab species among estuaries. Estuarine, Coastal and Shelf Science , 149. pp. 133-142.

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