Items where Subject is "06 BIOLOGICAL SCIENCES > 0602 Ecology > 060205 Marine and Estuarine Ecology (incl Marine Ichthyology)"

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Almany, Glenn R., Hamilton, Richard J., Bode, Michael, Matawai, Manuai, Potuku, Tapas, Saenz-Agudelo, Pablo, Planes, Serge, Berumen, Michael L., Rhodes, Kevin L., Thorrold, Simon R., Russ, Garry R., and Jones, Geoffrey P. (2013) Dispersal of grouper larvae drives local resource sharing in a coral reef fishery. Current Biology, 23 (7). pp. 626-630.

Abrantes, Kátya, Barnett, Adam, Marwick, Trent R., and Bouillon, Steven (2013) Importance of terrestrial subsidies for estuarine food webs in contrasting East African catchments. Ecosphere, 4 (1). pp. 1-33.

Allan, Bridie J.M., Domenici, Paolo, McCormick, Mark I., Watson, Sue-Ann, and Munday, Philip L. (2013) Elevated CO2 affects predator-prey interactions through altered performance. PLoS One, 8 (3). pp. 1-7.

Abrego, David, Willis, Bette L., and van Oppen, Madeleine J.H. (2012) Impact of light and temperature on the uptake of algal symbionts by coral juveniles. PLoS ONE, 7 (11). pp. 1-9.

Anderson, Kristen, Pratchett, Morgan, and Baird, Andrew (2012) Summer growth rates of corals at Lord Howe Island, Australia. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Araggones, Lemnuel V., Lawler, Ivan, Marsh, Helene, Domning, Daryl, and Hodgson, Amanda (2012) The role of sirenians in aquatic ecosystems. In: Hines, Ellen M., Reynolds III, John E., Aragones, Lemnuel V., Mignucci-Giannoni, Antonio A., and Marmotel, Miriam, (eds.) Sirenian Conservation. University Press of Florida, Florida USA, pp. 4-11.

Aswani, Shankar, Christie, Patrick, Muthiga, Nyawira A., Mahon, Robin, Primavera, Jurgenne H., Cramer, Lori A., Granek, Elise F., Kennedy, Chris J., Wolanski, Eric, and Hacker, Sally (2012) The way forward with ecosystem-based management in tropical contexts: reconciling with existing management systems. Marine Policy, 36 (1). pp. 1-10.

Ainsworth, T.D., Wasmund, K., Ukani, L., Seneca, F., Yellowlees, D., Miller, D., and Leggat, W. (2011) Defining the tipping point. A complex cellular life/death balance in corals in response to stress. Scientific Report, 1. pp. 1-9.

Abesamis, Rene A. (2011) Replenishment and connectivity of reef fish populations in the central Philippines. PhD thesis, James Cook University.

Ateweberhan, M., McClanahan, T.R., Graham, N.A.J., and Sheppard, C.R.C. (2011) Episodic heterogeneous decline and recovery of coral cover in the Indian Ocean. Coral Reefs, 30 (3). pp. 739-752.

Aeby, Greta S., Williams, Gareth J., Franklin, Erik C., Haapkyla, Jessica, Harvell, C. Drew, Neale, Stephen, Page, Cathie A., Raymundo, Laurie, Vargas-Ángel, Bernardo, Willis, Bette L., Work, Thierry M., and Davy, Simon K. (2011) Growth anomalies on the coral genera Acropora and Porites are strongly associated with host density and human population size across the Indo-Pacific. PLoS ONE, 6 (2). pp. 1-9.

Abrantes, Kátya G., and Barnett, Adam (2011) Intrapopulation variations in diet and habitat use in a marine apex predator, the broadnose sevengill shark Notorynchus cepedianus. Marine Ecology Progress Series, 442. pp. 133-148.

Abesamis, R.A., and Russ, G.R. (2010) Patterns of recruitment of coral reef fishes in a monsoonal environment. Coral Reefs, 29 (4). pp. 911-921.

Abrantes, Kátya Gisela, and Sheaves, Marcus (2010) Importance of freshwater flow in terrestrial–aquatic energetic connectivity in intermittently connected estuaries of tropical Australia. Marine Biology, 157 (9). pp. 2071-2086.

Alva-Campbell, Yvette, Floeter, Sergio R., Robertson, D. Ross, Bellwood, David R., and Bernardi, Giacomo (2010) Molecular phylogenetics and evolution of Holacanthus angelfishes (Pomacanthidae). Molecular Phylogenetics and Evolution, 56 (1). pp. 456-461.

Aswani, Shankar, and Sabetian, Armagan (2010) Implications of urbanization for artisanal parrotfish fisheries in the Western Solomon Islands. Conservation Biology, 24 (2). pp. 520-530.

Ardiwijaya, Rizya, Baird, Andrew, Kartawijaya, Tasrif, and Campbell, Stuart (2010) Changes in reef fish biomass in Karimunjawa National Park: a test of the effectiveness of government gazetted marine parks in Indonesia. In: Proceedings of the 11th International Coral Reef Symposium, pp. 1064-1068. From: 11th International Coral Reef Symposium, 07 - 11 July 2008, Fort Lauderdale, FL, USA.

Adjeroud, M., Fernandez, J.M., Carroll, A.G., Harrison, P.L., and Penin, L. (2010) Spatial patterns and recruitment processes of coral assemblages among contrasting environmental conditions in the southwestern lagoon of New Caledonia. Marine Pollution Bulletin, 61 (7-12). pp. 375-386.

Abrantes, Kátya, and Sheaves, Marcus (2010) Use of a δ13C–δ15N relationship to determine animal trophic positions in a tropical Australian estuarine wetland. Austral Ecology, 35 (1). pp. 96-103.

Adjeroud, M., Michonneau, F, Edmunds, P.J., Chancerelle, Y., Lison de Loma, T., Penin, L., Thibaut, L., Vidal-Dupiol, J., Salvat, B., and Galzin, R. (2009) Recurrent disturbances, recovery trajectories, and resilience of coral assemblages on a South Central Pacific reef. Coral Reefs, 28 (3). pp. 775-780.

Abrantes, Kátya, and Sheaves, Marcus (2009) Sources of nutrition supporting juvenile penaeid prawns in an Australian dry tropics estuary. Marine and Freshwater Research, 60 (9). pp. 949-959.

Abrego, David A., van Oppen, Madeleine J.H., and Willis, Bette L. (2009) Onset of algal endosymbiont specificity varies among closely related species of Acropora corals during early ontogeny. Molecular Ecology, 18 (16). pp. 3532-3543.

Almany, G.R., Connolly, S.R., Heath, D.D., Hogan, J.D., Jones, G.P., McCook, L.J., Mills, M., Pressey, R.L., and Williamson, D.H. (2009) Connectivity, biodiversity conservation and the design of marine reserve networks for coral reefs. Coral Reefs, 28 (2). pp. 339-351.

Abrantes, Kátya, and Sheaves, Marcus (2009) Food web structure in a near-pristine mangrove area of the Australian Wet Tropics. Estuarine, Coastal and Shelf Science, 82 (4). pp. 597-607.

Adams, Lisa M., Cumbo, Vivian, and Takabayashi, Misaki (2009) Exposure to sediment enhances primary acquisition of Symbiodinium by asymbiotic coral larvae. Marine Ecology Progress Series, 377. pp. 179-156.

Abrego, David, van Oppen, Madeleine J.H., and Willis, Bette L. (2009) Highly infectious symbiont dominates initial uptake in coral juveniles. Molecular Ecology, 18. pp. 3518-3531.

Abrego, David (2008) Temporal and environmental influences on the early establishment and maintenance of coral-symbiodinium symbioses. PhD thesis, James Cook University.

Abrantes, Katya, and Sheaves, Marcus (2008) Incorporation of terrestrial wetland material into aquatic food webs in a tropical estuarine wetland. Estuarine, Coastal and Shelf Science , 80 (3). pp. 401-412.

Abrego, David, Ulstrup, Karin E., Willis, Bette L., and van Oppen, Madeleine J.H. (2008) Species-specific interactions between algal endosymbionts and coral hosts define their bleaching response to heat and light stress. Proceedings of the Royal Society of London Series B, Biological Sciences, 275 (1648). pp. 2273-2282.

Abrantes, Kátya Gisela dos Santos (2008) Trophic structure and the importance of terrestrial wetland producers for aquatic food webs in tropical Australian estuaries. PhD thesis, James Cook University.

Al-Habsi, S. H., Sweeting, C. J., Polunin, N. V. C., and Graham, Nicholas (2008) δ15N and δ13C elucidation of size structured food webs in a Western Arabian Sea demersal trawl assemblage. Marine Ecology Progress Series, 353. pp. 55-63.

Anthony, Shelley L., and Thomas, Séverine (2008) Coral Husbandry and Long-Term Coral Survival in the Coral Reef Exhibit at Reef HQ Aquarium, Townsville, Australia. Report. Burgers' Zoo, Arnhem, Netherlands.

Anthony, S.L., Page, C.A., Bourne, D.G., and Willis, B.L. (2008) Newly characterized distinct phases of the coral disease 'atramentous necrosis' on the Great Barrier Reef. Diseases of Aquatic Organisms, 81 (3). pp. 255-259.

Arvedlund, M., Munday, P.L., and Takemura, A. (2007) The morphology and ultrastructure of the peripheral olfactory organ in newly metamorphosed coral-dwelling gobies, Paragobiodon xanthosomus Bleeker (Gobiidae, Teleostei). Tissue and Cell, 39 (5). pp. 335-342.

Adjeroud, Mehdi, Pratchett, Morgan, Kospartov, Marie, Lejeusne, Christophe, and Penin, Lucie (2007) Small-scale variability in the size structure of scleractinian corals around Moorea, French Polynesia : patterns across depths and locations. Hydrobiologia, 589 (1). pp. 117-126.

Almany, Glenn R., Peacock, Lisa F., Syms, Craig, McCormick, Mark I., and Jones, Geoffrey P. (2007) Predators target rare prey in coral reef fish assemblages. Oecologia, 152 (4). pp. 751-761.

Anthony, K.R.N., and Kerswell, A.P. (2007) Coral mortality following extreme low tides and high solar radiation. Marine Biology, 151 (5). pp. 1623-1631.

Almany, Glenn R. , Berumen, Michael L., Thorrold, Simon R., Planes, Serge, and Jones, Geoffrey P. (2007) Local replenishment of coral reef fish populations in a marine reserve. Science, 316 (5825). pp. 742-744.

Anthony, Kenneth R.N., Connolly, Sean R., and Hoegh-Guldberg, Ove (2007) Bleaching, energetics, and coral mortality risk: Effects of temperature, light, and sediment regime. Limnology and Oceanography, 52 (2). pp. 716-726.

Aragones, Lemnuel V., Lawler, Ivan R., Foley, William J., and Marsh, Helene (2006) Dugong grazing and turtle cropping: grazing optimization in tropical seagrass systems? Oecologia, 149 (4). pp. 635-647.

Andrefouet, S., Ouillon, S., Brinkman, R., Falter, J., Douillet, P., Wolk, F., Smith, R., Garen, P., Martinez, E., Laurent, V., Lo, C., Remoissenet, G., Scourzic, B., Gilbert, A., Deleersnijder, E., Steinberg, C., Choukroun, S., and Buestel, D. (2006) Review of solutions for 3D hydrodynamic modeling applied to aquaculture in South Pacific atoll lagoons. Marine Pollution Bulletin, 52 (10). pp. 1138-1155.

Alcala, AngelC., and Russ, Garry R. (2006) No-take Marine Reserves and Reef Fisheries Management in the Philippines: a new people power revolution. Ambio, 35 (5). pp. 245-254.

Abesamis, Rene A., Alcala, Angel C., and Russ, Garry R. (2006) How much does the fishery at Apo Island benefit from spillover of adult fish from the adjacent marine reserve? Fishery Bulletin, 104 (3). pp. 360-375.

Abesamis, Rene, Russ, Garry, and Alcala, Angel (2006) Gradients of abundance of fish across no-take marine reserve boundaries: evidence from Philippine coral reefs. Aquatic Conservation: marine and freshwater ecosystems , 16 (4). pp. 349-371.

Almany, Glenn R., and Webster, Michael S. (2006) The predation gauntlet: early post-settlement mortality in reef fishes. Coral Reefs, 25 (1). pp. 19-22.

Abesamis, Rene A., and Russ, Garry R. (2005) Density-dependent spillover from a marine reserve: long-term evidence. Ecological Applications, 15 (5). pp. 1798-1812.

Arthur, Rohan, Done, Terence J., and Marsh, Helene (2005) Benthic recovery four years after an El Niño-induced coral mass mortality in the Lakshadweep atolls. Current Science, 89 (4). pp. 694-699.

Annese, Danielle M., and Kingsford, Michael J. (2005) Distribution, movements and diet of nocturnal fishes on temperate reefs. Environmental Biology of Fishes, 72 (2). pp. 161-174.

Abesamis, Rene A. (2005) Patterns and mechanisms of spillover from marine reserves. Masters (Research) thesis, James Cook University.

Alcala, Angel C., Russ, Garry R., Maypa, Aileen P., and Calumpong, Hilconida C. (2005) A long-term, spatially replicated experimental test of the effect of marine reserves on local fish yields. Canadian Journal of Fisheries and Aquatic Sciences, 62 (1). pp. 98-108.

Anthony, K.R.N., Hoogenboom, M. O., and Connolly, S.R. (2005) Adaptive variation in coral geometry and the optimization of internal colony light climates. Functional Ecology, 19 (1). pp. 17-26.

Andre, Jessica, Gyuris, Emma, and Lawler, Ivan R. (2005) Comparison of the diets of sympatric dugongs and green turtles on the Orman Reefs, Torres Strait, Australia. Wildlife Research, 32 (1). pp. 53-62.

Anthony, Kenneth R. N., and Connolly, Sean R. (2004) Environmental limits to growth: physiological niche boundaries of corals along turbidity - light gradients. Oecologia, 141 (3). pp. 373-384.

Almany, Glenn R. (2004) Does increased habitat complexity reduce predation and competition in coral reef fish assemblages? Oikos, 106 (2). pp. 275-284.

Ackerman, John L., Bellwood, David R., and Brown, James H. (2004) The contribution of small individuals to density-body size relationships: examination of energetic equivalence in reef fishes. Oecologia, 139 (4). pp. 568-571.

Almany, Glenn R (2004) Differential effects of habitat complexity, predators and competitors on abundance of juvenile and adult coral reef fishes. Oecologia, 141 (1). pp. 105-113.

Ackerman, J. L. (2004) Geographic variation in size at age of the coral reef fish, Thalassoma lunare (family: Labridae) : a contribution to life history theory. PhD thesis, James Cook University.

Almany, Glenn R., and Webster, Michael S. (2004) Odd species out as predators reduce diversity of coral-reef fishes. Ecology, 85 (11). pp. 2933-2937.

Abdulla, Ameer (2004) Predator-prey interactions in coral reef fish : the implications of predation risk on the behavior and growth of prey. PhD thesis, James Cook University.

Almany, Glenn R (2004) Priority effects in coral reef fish communities of the Great Barrier Reef. Ecology, 85 (10). pp. 2872-2880.

Anthony, Kenneth R.N., and Hoegh-Guldberg, Ove (2003) Kinetics of photoacclimation in corals. Oecologia, 134 (1). pp. 23-31.

Adams, S. (2003) Morphological ontogeny of the gonad of three plectropomid species through sex differentiation and transition. Journal of Fish Biology, 63 (1). pp. 22-36.

Almany, Glenn R (2003) Priority effects in coral reef fish communities. Ecology, 84 (7). pp. 1920-1935.

Ackerman, J.L., and Bellwood, D.R. (2002) Comparative efficiency of clove oil and rotenone for sampling tropical reef fish assemblages. Journal of Fish Biology, 60 (4). pp. 893-901.

Adams, S., and Williams, A.J. (2001) A preliminary test of the transitional growth spurt hypothesis using the protogynous coral trout Plectropomus maculatus. Journal of Fish Biology, 59 (1). pp. 183-185.

Ackerman, John L., and Bellwood, David R. (2000) Reef fish assemblages: a re-evaluation using enclosed rotenone stations. Marine Ecology-Progress Series, 206. pp. 227-237.

Ayre, David J., and Hughes, Terence P. (2000) Genotypic diversity and gene flow in brooding and spawning corals along the Great Barrier Reef, Australia. Evolution, 54 (5). pp. 1590-1605.

Anthony, Kenneth R.N., and Fabricius, Katharina E. (2000) Shifting roles of heterotrophy and autotrophy in coral energetics under varying turbidity. Journal of Experimental Marine Biology and Ecology, 252 (2). pp. 221-253.

Adams, S., Mapstone, B.D., Russ, G.R., and Davies, C.R. (2000) Geographic variation in the sex ratio, sex specific size, and age structure of Plectropomus leopardus (Serranidae) between reefs open and closed to fishing on the Great Barrier Reef. Canadian Journal of Fisheries and Aquatic Sciences, 57 (7). pp. 1448-1458.

Anthony, K.R.N. (2000) Enhanced particle-feeding capacity of corals on turbid reefs (Great Barrier Reef, Australia). Coral Reefs, 19 (1). pp. 59-67.

Arvedlund, Michael, Bundgaard, Ingvar, and Nielsen, Lis E. (2000) Host imprinting in anemonefishes (Pisces: Pomacentridae): does it dictate spawning site preferences? Environmental Biology of Fishes, 58 (2). pp. 203-213.

Aragones, Lemnuel, and Marsh, Helene (2000) Impact of dugong grazing and turtle cropping on tropical seagrass communities. Pacific Conservation Biology, 5 (4). pp. 277-288.

Arvedlund, Michael, Larsen, Kim, and Winsor, Heather (2000) The embryonic development of the olfactory system in Amphiprion melanopus (Perciformes: Pomacentridae) related to the host imprinting hypothesis. Journal of the Marine Biological Association of the United Kingdom, 80 (6). pp. 1103-1109.

Anthony, Kenneth Roald Nies (1999) Sediment: stress factor or food source for reef corals. PhD thesis, James Cook University.

Anthony, Kenneth R.N. (1999) A tank system for studying benthic aquatic organisms at predictable levels of turbidity and sedimentation: case study examining coral growth. Limnology and Oceanography, 44 (6). pp. 1415-1422.

Anthony, Kenneth R.N. (1999) Coral suspension feeding on fine particulate matter. Journal of Experimental Marine Biology and Ecology, 232 (1). pp. 85-106.

Arvedlund, Michael, McCormick, Mark I., Fautin, Daphne G., and Bildsøe, Mogens (1999) Host recognition and possible imprinting in the anemonefish Amphiprion melanopus (Pisces: Pomacentridae). Marine Ecology Progress Series, 188. pp. 207-218.

Ayre, David J., Hughes, Terence P., and Standish, Rachel J. (1997) Genetic differentiation, reproductive mode, and gene flow in the brooding coral pocillopora damicornis along the Great Barrier Reef, Australia. Marine Ecology Progress Series, 159. pp. 175-187.

B

Baker, Ronald, Buckland, Amanda, and Sheaves, Marcus (2014) Fish gut content analysis: robust measures of diet composition. Fish and Fisheries, 15 (1). pp. 170-177.

Brunnschweiler, Juerg M., Abrantes, Kátya G., and Barnett, Adam (2014) Long-term changes in species composition and relative abundances of sharks at a provisioning site. PLoS ONE, 9 (1). pp. 1-10.

Bongaerts, P., Muir, P., Englebert, N., Bridge, T.C.L., and Hoegh-Guldberg, O. (2013) Cyclone damage at mesophotic depths on Myrmidon Reef (GBR). Coral Reefs, 32 (4). p. 935.

Baird, Andrew H., Cumbo, Vivian R., Figueiredo, Joana, and Harii, Saki (2013) A pre-zygotic barrier to hybridization in two con-generic species of scleractinian corals. F1000Research, 2. pp. 1-5.

Bridge, Tom C.L., Hoey, Andrew S., Campbell, Stuart J., Muttaquin, Efin, Rudi, Edi, Fadli, Nur, and Baird, Andrew H. (2013) Depth-dependent mortality of reef corals following a severe bleaching event: implications for thermal refuges and population recovery. F1000Research, 2. pp. 1-12.

Boström-Einarsson, Lisa, Bonin, Mary C., Munday, Philip L., and Jones, Geoffrey P. (2013) Strong intraspecific competition and habitat selectivity influence abundance of a coral-dwelling damselfish. Journal of Experimental Marine Biology and Ecology, 448. pp. 85-92.

Brooker, Rohan M., Jones, Geoffrey P., and Munday, Philip L. (2013) Within-colony feeding selectivity by a corallivorous reef fish: foraging to maximize reward? Ecology and Evolution, 3 (12). pp. 4109-4118.

Boaden, A.E., and Kingsford, M.J. (2013) Distributions and habitat associations of the bridled monocle bream Scolopsis bilineatus (Nemipteridae): a demographic approach. Journal of Fish Biology, 83 (3). pp. 618-641.

Brooker, R.M., Munday, P.L., Mcleod, I.M., and Jones, G.P. (2013) Habitat preferences of a corallivorous reef fish: predation risk versus food quality. Coral Reefs, 32 (3). pp. 613-622.

Baker, Ronald, Fry, Brian, Rozas, Lawrence P., and Minello, Thomas J. (2013) Hydrodynamic regulation of salt marsh contributions to aquatic food webs. Marine Ecology Progress Series, 490. pp. 37-52.

Brandl, S.J., and Bellwood, D.R. (2013) Morphology, sociality, and ecology: can morphology predict pairing behavior in coral reef fishes? Coral Reefs, 32 (3). pp. 835-846.

Blowes, Shane A., Pratchett, Morgan S., and Connolly, Sean R. (2013) Heterospecific aggression and dominance in a guild of coral-feeding fishes: the roles of dietary ecology and phylogeny. American Naturalist, 182 (2). pp. 157-168.

Bauman, Andrew G., Feary, David A., Heron, Scott F., Pratchett, Morgan S., and Burt, John A. (2013) Multiple environmental factors influence the spatial distribution and structure of reef communities in the northeastern Arabian Peninsula. Marine Pollution Bulletin, 72 (2). pp. 302-312.

Bell, Johann D., Ganachaud, Alexandre, Gehrke, Peter C., Griffiths, Shane P., Hobday, Alistair J., Hoegh-Guldberg, Ove, Johnson, Johanna E., Le Borgne, Robert, Lehodey, Patrick, Lough, Janice M., Matear, Richard J., Pickering, Timothy D., Pratchett, Morgan S., Sen Gupta, Alex, Senina, Inna, and Waycott, Michelle (2013) Mixed responses of tropical Pacific fisheries and aquaculture to climate change. Nature Climate Change, 3 (6). pp. 591-599.

Brandl, S.J., and Bellwood, D.R. (2013) Pair formation in the herbivorous rabbitfish Siganus doliatus. Journal of Fish Biology, 82 (6). pp. 2031-2044.

Brooker, Rohan M., Jones, Geoffrey P., and Munday, Philip L. (2013) Prey selectivity affects reproductive success of a corallivorous reef fish. Oecologia, 172 (2). pp. 409-416.

Bauman, Andrew Geoffrey (2013) The ecology and dynamics of coral reef communities in an extreme reef environment: the southern Persian Gulf. PhD thesis, James Cook University.

Bridge, Tom C.L., Hughes, Terry P., Guinotte, John M., and Bongaerts, Pim (2013) Call to protect all coral reefs. Nature Climate Change, 3. pp. 528-530.

Bell, Ian (2013) Algivory in hawksbill turtles: Eretmochelys imbricata food selection within a foraging area on the Northern Great Barrier Reef. Marine Ecology, 34 (1). pp. 43-55.

Bauman, Andrew G., Pratchett, Morgan S., Baird, Andrew H., Riegl, Bernhard, Heron, Scott F., and Feary, David A. (2013) Variation in the size structure of corals is related to environmental extremes in the Persian Gulf. Marine Environmental Research, 84. pp. 43-50.

Bijoux, Jude P., Dagorn, Laurent, Berke, Gregory, Cowley, Paul D., Soria, Marc, Gaertner, Jean-Claude, and Robinson, Jan (2013) Temporal dynamics, residency and site fidelity of spawning aggregations of a herbivorous tropical reef fish Siganus sutor. Marine Ecology Progress Series, 475. pp. 233-247.

Baird, A.H., Pratchett, M.S., Hoey, A.S., Herdiana, Y., and Campbell, S.J. (2013) Acanthaster planci is a major cause of coral mortality in Indonesia. Coral Reefs, 32 (3). pp. 803-812.

Barnett, Adam, Yick, Jonah L., Abrantes, Kátya G., and Awruch, Cynthia A. (2013) Trophic ecology of an abundant predator and its relationship with fisheries. Marine Ecology Progress Series, 494. pp. 241-248.

Berumen, M.L., Hoey, A.S., Bass, W.H., Bouwmeester, J., Catania, D., Cochran, J.E.M., Khalil, M.T., Miyake, S., Mughal, M.R., Spaet, J.L.Y., and Saenz-Agudelo, P. (2013) The status of coral reef ecology research in the Red Sea. Coral Reefs, 32 (3). pp. 737-748.

Baird, Andrew, Sommer, Brigitte, and Madin, Joshua (2012) Pole-ward range expansion of Acropora spp. along the east coast of Australia. Coral Reefs, 31 (4). p. 1063.

Bode, Michael, Connolly, Sean R., and Pandolfi, John M. (2012) Species differences drive nonneutral structure in Pleistocene coral communities. American Naturalist, 180 (5). pp. 577-588.

Bellwood, David R., Baird, Andrew H., Depczynski, Martial, González-Cabello, Alonso, Hoey, Andrew S., Lefevre, Carine D., and Tanner, Jennifer K. (2012) Coral recovery may not herald the return of fishes on damaged coral reefs. Oecologia, 170 (2). 1- 7.

Boaden, A.E., and Kingsford, M.J. (2012) Diel behaviour and trophic ecology of Scolopsis bilineatus (Nemipteridae). Coral Reefs, 31 (3). pp. 871-883.

Bell, Ian Philip (2012) The Hawksbill turtle, Eretmochelys imbricate, (Linnaeus 1766): ecological insights of a resident population in the Northern Great Barrier Reef, Queensland, Australia. PhD thesis, James Cook University.

Berkstrom, Charlotte, Jones, Geoffrey P., McCormick, Mark I., and Srinivasan, Maya (2012) Ecological versatility and its importance for the distribution and abundance of coral reef wrasses. Marine Ecology Progress Series, 461. pp. 151-163.

Berumen, M.L., Trip, E.D.L., Pratchett, M.S., and Choat, J.H. (2012) Differences in demographic traits of four butterflyfish species between two reefs of the Great Barrier Reef separated by 1,200 km. Coral Reefs, 31 (1). pp. 169-177.

Bonaldo, R.M., Welsh, J.Q., and Bellwood, D.R. (2012) Spatial and temporal variation in coral predation by parrotfishes on the GBR: evidence from an inshore reef. Coral Reefs, 31 (1). pp. 263-272.

Bonin, M.C. (2012) Specializing on vulnerable habitat: Acropora selectivity among damselfish recruits and the risk of bleaching-induced habitat loss. Coral Reefs, 31 (1). pp. 287-297.

Baird, Andrew H., Campbell, Stuart J., Fadli, Nur, Hoey, Andrew S., and Rudi, Edi (2012) The shallow water hard corals of Pulau Weh, Aceh Province, Indonesia. Aquaculture, Aquarium, Conservation and Legislation, 5 (1). pp. 23-28.

Bell, Ian, and Pike, David A. (2012) Somatic growth rates of hawksbill turtles Eretmochelys imbricata in a northern Great Barrier Reef foraging area. Marine Ecology Progress Series, 446. pp. 275-283.

Berumen, Michael L., Almany, Glenn R., Planes, Serge, Jones, Geoffrey P., Saenz-Agudelo, Pablo, and Thorrold, Simon R. (2012) Persistence of self-recruitment and patterns of larval connectivity in a marine protected area network. Ecology and Evolution, 2 (2). pp. 444-452.

Bannister, R.J., Battershill, C.N., and de Nys, R. (2012) Suspended sediment grain size and mineralogy across the continental shelf of the Great Barrier Reef: impacts on the physiology of a coral reef sponge. Continental Shelf Research, 32. pp. 86-95.

Beeden, Roger, Maynard, Jeffrey A., Marshall, Paul A., Heron, Scott F., and Willis, Bette L. (2012) A framework for responding to coral disease outbreaks that facilitates adaptive management. Environmental Management, 49 (1). pp. 1-13.

Barnes, Lachlan, Bellwood, David R., Sheaves, Marcus, and Tanner, Jennifer K. (2012) The use of clear-water non-estuarine mangroves by reef fishes on the Great Barrier Reef. Marine Biology, 159 (1). pp. 211-220.

Bridge, T., Scott, A., and Steinberg, D. (2012) Abundance and diversity of anemonefishes and their host sea anemones at two mesophotic sites on the Great Barrier Reef, Australia. Coral Reefs, 31 (4). pp. 1057-1062.

Beltran, Victor H., Dunlap, Walter C., and Long, Paul F. (2012) Comparison of the photosynthetic bleaching response of four coral species common to the central GBR. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-6. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Busilacchi, S., Williams, A.J., Russ, G.R., and Begg, G.A. (2012) Complexity of applying minimum legal sizes (MLS) of retention in an indigenous coral reef fishery. Fisheries Management and Ecology.

Baird, Andrew H., Emslie, Michael J., and Lewis, Andrew R. (2012) Extended periods of coral recruitment on the Great Barrier Reef. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Briffa, Mark, de la Haye, Kate, and Munday, Philip L. (2012) High CO2 and marine animal behaviour: potential mechanisms and ecological consequences. Marine Pollution Bulletin, 64 (8). pp. 1519-1528.

Bell, Ian, Schwarzkopf, Lin, and Manicom, Carryn (2012) High survivorship of an annually decreasing aggregation of hawksbill turtles, Eretmochelys imbricata, found foraging in the northern Great Barrier Reef. Aquatic Conservation: marine and freshwater ecosystems , 22 (5). pp. 673-682.

Bosiger, Yoland J., Lonnstedt, Oona M., McCormick, Mark I., and Ferrari, Maud C.O. (2012) Learning temporal patterns of risk in a predator-diverse environment. PLoS ONE, 7 (4). pp. 1-7.

Brewer, Thomas D., Cinner, Joshua E., Fisher, Rebecca, Green, Alison, and Wilson, Shaun K. (2012) Market access, population density, and socioeconomic development explain diversity and functional group biomass of coral reef fish assemblages. Global Environmental Change, 22 (2). pp. 399-406.

Bruggemann, J. Henrich, Rodier, Martine, Guillaume, Mireille M.M., Andréfouët, Serge, Arfi, Robert, Cinner, Joshua E., Pichon, Michel, Ramahatatra, Frederic, Rasoamanendrika, Faravavy, Zinke, Jens, and McClanahan, Tim R. (2012) Wicked social–ecological problems forcing unprecedented change on the latitudinal margins of coral reefs: the case of southwest Madagascar. Ecology and Society, 17 (4). pp. 1-17.

Benzoni, Francesca, Pichon, Michel, Dutrieux, Eric, Chaîneau, Claude-Henri, Abdulaziz, Malek, and Al-Thary, Ibrahim (2012) The scleractinian fauna of Yemen: diversity and species distribution patterns. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-6. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Bell, Ian, and Ariel, Ellen (2011) Dietary shift in green turtles. Seagrass-Watch News, 44. pp. 2-5.

Bongaerts, Pim, Sampayo, Eugenia M., Bridge, Thomas C.L., Ridgway, Tyrone, Vermeulen, Francisca, Englebert, Norbert, Webster, Jody M., and Hoegh-Guldberg, Ove (2011) Symbiodinium diversity in mesophotic coral communities on the Great Barrier Reef: a first assessment. Marine Ecology Progress Series, 439. pp. 117-126.

Brooker, R.M., Munday, P.L., and Jones, G.P. (2011) Coral obligate filefish masquerades as branching coral. Coral Reefs, 30 (3). p. 803.

Ban, Natalie, Adams, Vanessa, Almany, Glenn, Ban, Stephen, Cinner, Joshua, McCook, Laurence, Mills, Morena, Pressey, Bob, and White, Alan (2011) Designing, implementing and managing marine protected areas: emerging trends and opportunities for coral reef nations. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 21-31.

Browne, Nicola (2011) A carbonate and terrigenous sediment budget for inshore turbid reefs on the Great Barrier Reef. PhD thesis, James Cook University.

Beer, Nicola A., Wing, Stephen R., and Hu, Yi (2011) Physical versus biological control of element incorporation into biogenic carbonate: an in situ experiment in a New Zealand fjord. Marine Ecology Progress Series, 433. pp. 289-301.

Beukers-Stewart, B.D., Beukers-Stewart, J.S, and Jones, G.P. (2011) Behavioural and developmental responses of predatory coral reef fish to variation in the abundance of prey. Coral Reefs, 30 (3). pp. 855-864.

Bauman, A.G., Baird, A.H., and Cavalcante, G.H. (2011) Coral reproduction in the world's warmest reefs: southern Persian Gulf (Dubai, United Arab Emirates). Coral Reefs, 30 (2). pp. 405-413.

Bellwood, D.R., and Choat, J.H. (2011) Dangerous demographics: the lack of juvenile humphead parrotfishes Bolbometopon muricatum on the Great Barrier Reef. Coral Reefs, 30 (2). pp. 549-554.

Bonaldo, R.M., and Bellwood, D.R. (2011) Spatial variation in the effects of grazing on epilithic algal turfs on the Great Barrier Reef, Australia. Coral Reefs, 30 (2). pp. 381-390.

Barnett, Adam, Abrantes, Kátya G., Stevens, John D., and Semmens, Jayson M. (2011) Site fidelity and sex-specific migration in a mobile apex predator: implications for conservation and ecosystem dynamics. Animal Behaviour, 81 (5). pp. 1039-1048.

Beger, Maria, Babcock, Russ, Booth, David J., Bucher, Daniel, Condie, Scott A., Creese, Bob, Cvitanovic, Christopher, Dalton , Steve J., Harrison, Peter, Hoey, Andrew, Jordan, Alan, Loder, Jennifer, Malcolm, Hamish, Purcell, Steven W., Roelfsma, Chris, Sachs, Patrick , Smith, Stephen D.A., Sommer, Brigitte, Stuart-Smith, Rick, Thomson, Damian, Wallace, Carden C., Zann, Maria, and Pandolfi, John M. (2011) Research challenges to improve the management and conservation of subtropical reefs to tackle climate change threats. Ecological Management and Restoration, 12 (1). e7-e10.

Bennett, S., and Bellwood, D.R. (2011) Latitudinal variation in macroalgal consumption by fishes on the Great Barrier Reef. Marine Ecology Progress Series, 426. pp. 241-252.

Bonaldo, R.M., and Bellwood, D.R. (2011) Parrotfish predation on massive Porites on the Great Barrier Reef. Coral Reefs, 30 (1). pp. 259-269.

Bridge, T.C.L., Done, T.J., Beaman, R.J., Friedman, A., Williams, S.B., Pizarro, O., and Webster, J.M. (2011) Topography, substratum and benthic macrofaunal relationships on a tropical mesophotic shelf margin, central Great Barrier Reef, Australia. Coral Reefs, 30 (1). pp. 143-153.

Bonaldo, R.M., Krajewski, P.J., and Bellwood, D.R. (2011) Relative impact of parrotfish grazing scars on massive Porites corals at Lizard Island, Great Barrier Reef. Marine Ecology Progress Series, 423. pp. 223-233.

Baird, A.H., Blakeway, D.R., Hurley, T.J., and Stoddart , J.A. (2011) Seasonality of coral reproduction in the Dampier Archipelago, northern Western Australia. Marine Biology, 158 (2). pp. 275-285.

Burt, John A., Feary, David A., Bauman, Andrew G., Usseglio, Paolo, Cavalcante, Georgenes H., and Sale, Peter F. (2011) Biogeographic patterns of reef fish community structure in the northeastern Arabian Peninsula. ICES Journal of Marine Science, 68 (9). pp. 1875-1883.

Bonin, Mary C., Almany, Glenn R., and Jones, Geoffrey P. (2011) Contrasting effects of habitat loss and fragmentation on coral-associated reef fishes. Ecology, 92 (7). pp. 1503-1512.

Bouwmeester, Jessica, Berumen, Michael, and Baird, Andrew (2011) Daytime broadcast spawning of Pocillopora verrucosa on coral reefs of the central Red Sea. Galaxea, Journal of Coral Reef Studies, 13. pp. 23-24.

Bridge, Thomas C.L., Done, Terrence J., Friedman, Ariell, Beaman, Robin J., Williams, Stefan B., Pizzaro, Oscar, and Webster, Jody M. (2011) Variability in mesophotic coral reef communities along the Great Barrier Reef, Australia. Marine Ecology Progress Series, 428. pp. 63-75.

Barba, Jacquelyn (2010) Demography of parrotfish: age, size and reproductive variables. Masters (Research) thesis, James Cook University.

Berumen, M. L, Walsh, H.J., Raventos, N., Planes, S., Jones, G.P., Starczak, V., and Thorrold, S.R. (2010) Otolith geochemistry does not reflect dispersal history of clownfish larvae. Coral Reefs, 29 (4). pp. 883-891.

Barbosa, M., Dornelas, M., and Magurran, A.E. (2010) Effects of polyandry on male phenotypic diversity. Journal of Evolutionary Biology, 23 (11). pp. 2442-2452.

Babcock, R.C., Shears, N.T., Alcala, A.C., Barrett, N.S., Edgar, G.J., Lafferty, K.D., McClanahan, T.R., and Russ, G.R. (2010) Decadal trends in marine reserves reveal differential rates of change in direct and indirect effects. Proceedings of the National Academy of Sciences of the United States of America, 107 (43). pp. 18256-18261.

Burt, John, Feary, David, Usseglio, Paolo, Bauman, Andrew, and Sale, Peter F. (2010) The influence of wave exposure on coral community development on man-made breakwater reefs, with a comparison to a natural reef. Bulletin of Marine Science, 86 (4). pp. 839-859.

Bonin, Mary Catherine (2010) Patterns of microhabitat specialization and the consequences of coral degradation for coral-associated reef fishes. PhD thesis, James Cook University.

Baird, Andrew H., Kospartov, Marie C., and Purcell, Steven (2010) Reproductive synchrony in Acropora assemblages on reefs of New Caledonia. Pacific Science, 64 (3). pp. 405-412.

Bennett, S., Vergés, A., and Bellwood, D.R. (2010) Branching coral as a macroalgal refuge in a marginal coral reef system. Coral Reefs, 29 (2). pp. 471-480.

Bonaldo, Roberta Martini (2010) The ecosystem role of parrotfishes on coral reefs. PhD thesis, James Cook University.

Bannister, R.J., Battershill, C.N., and de Nys, R. (2010) Demographic variability and long-term change in a coral reef sponge along a cross-shelf gradient of the Great Barrier Reef. Marine and Freshwater Research, 61 (4). pp. 389-396.

Bondarenko, Olga, Kininmonth, Stuart, and Kingsford, Michael (2010) Deployment of wireless sensor network to study oceanography of coral reefs. International Journal on Advances in Networks and Services, 3 (1 and 2). pp. 92-102.

Bhagooli, R, Baird, Andrew, and Ralph, Peter (2010) Does the coral host protect its algal symbionts from heat and light stresses? In: Proceedings of the 11th International Coral Reef Symposium, pp. 113-117. From: 11th International Coral Reef Symposium, 07 - 11 July 2008, Fort Lauderdale, FL, USA.

Baird, A.H., Bhagooli, R., Nonaka, M., Yakovleva, I., Yamamoto, H.H., Hidaka, M., and Yamasaki, H. (2010) Environmental controls on the establishment and development of algal symbiosis in corals. In: Proceedings of the 11th International Coral Reef Symposium, pp. 108-112. From: 11th International Coral Reef Symposium, 07 - 11 July 2008, Fort Lauderdale, FL, USA.

Baker, Ron, and Sheaves, Marcus (2009) Overlooked small and juvenile piscivores dominate shallow-water estuarine "refuges" in tropical Australia. Estuarine, Coastal and Shelf Science , 85 (4). pp. 618-626.

Bartlett, C.Y., Manua, C., Cinner, J., Sutton, S., Jimmy, R., South, R., Nilsson, J., and Raina, J. (2009) Comparison of outcomes of permanently closed and periodically harvested coral reef reserves. Conservation Biology, 23 (6). pp. 1475-1484.

Berumen, Michael L., and Almany, Glenn R (2009) External tagging does not affect the feeding behavior of a coral reef fish, Chaetodon vagabundus (Pisces: Chaetodontidae). Environmental Biology of Fishes, 86 (4). pp. 447-450.

Baird, Andrew H., Guest, James R., and Willis, Bette L. (2009) Systematic and biogeographical patterns in the reproductive biology of scleractinian corals. Annual Review of Ecology, Evolution, and Systematics, 40. pp. 551-571.

Bonin, Mary C., Munday, Philip L., McCormick, Mark I., Srinivasan, Maya, and Jones, Geoffrey P. (2009) Coral-dwelling fishes resistant to bleaching but not to mortality of host corals. Marine Ecology Progress Series, 394. pp. 215-222.

Bellwood, David R., and Meyer, Christopher P. (2009) Endemism and evolution in the Coral Triangle: a call for clarity. Journal of Biogeography, 36 (10). pp. 2010-2012.

Baird, Andrew H., Bhalla, Ravinder S. , Kerr, Alexander M., Pelkey, Neil W. , and Srinivas, V. (2009) Do mangroves provide an effective barrier to storm surges? Proceedings of the National Academy of Sciences of the United States of America, 106 (40). E111-E111.

Brown, D.P., Basch, L., Barshis, D., Forsman, Z., Fenner, D., and Goldberg, J. (2009) American Samoa's island of giants: massive Porites colonies at Ta'u island. Coral Reefs, 28 (3). p. 735.

Baker, Ron, and Sheaves, Marcus (2009) Refugees or ravenous predators: detecting predation on new recruits to tropical estuarine nurseries. Wetlands Ecology and Management, 17 (4). pp. 317-330.

Brierley, Andrew S., and Kingsford, Michael J. (2009) Impacts of climate change on marine organisms and ecosystems. Current Biology, 19 (14). R602-R614.

Bay, Line K., Ulstrup, Karin E., Nielsen, H. Bjorn, Jarmer, Hanne, Goffard, Nicolas, Willis, Bette L., Miller, David J., and van Oppen, Madeleine J.H. (2009) Microarray analysis reveals transcriptional plasticity in the reef building coral Acropora millepora. Molecular Ecology, 18 (14). pp. 3062-3075.

Bonaldo, Roberta Martini, and Bellwood, David R. (2009) Dynamics of parrotfish grazing scars. Marine Biology, 156 (4). pp. 771-777.

Bonin, M.C., Srinivasan, M., Almany, G.R., and Jones, G.P. (2009) Interactive effects of interspecifc competition and microhabitat on early post-settlement survival in a coral reef fish. Coral Reefs, 28 (1). pp. 265-274.

Barneche, Diego R., Floeter, S.R., Ceccarelli, D.M., Frensel, D.M.B., Dinslaken, D.F., Mario, H.F.S., and Ferreira, C.E.L. (2009) Feeding macroecology of territorial damselfishes (Perciformes: Pomacentridae). Marine Biology, 156 (3). pp. 289-299.

Baumgartner, Finn A., Motti, Cherie, de Nys, Rocky, and Paul, Nicholas A. (2009) Feeding preferences and host associations of specialist marine herbivores align with quantitative variation in seaweed secondary metabolites. Marine Ecology Progress Series, 396. pp. 1-12.

Baird, Andrew, Birrell, Chico L., Hughes, Terence, McDonald, Abbi, Nojima, Satoshi, Page, Cathie A., Pratchett, Morgan S., and Yamasaki, Hideo (2009) Latitudinal variation in reproductive synchrony in Acropora assemblages: Japan vs. Australia. Galaxea, Journal of Coral Reef Studies, 11 (2). pp. 101-108.

Baird, A.H., and Guest , J.R. (2009) Spawning synchrony in scleractinian corals: comment on Mangubhai & Harrison (2008). Marine Ecology Progress Series, 374. pp. 301-304.

Belmaker, Jonathan, Ziv, Yaron, Shashar, Nadav, and Connolly, Sean R. (2008) Regional variation in the hierarchical partitioning of diversity in coral-dwelling fishes. Ecology, 89 (10). pp. 2829-2840.

Bannister, Raymond (2008) The ecology and feeding biology of the sponge Rhopaloeides odorabile. PhD thesis, James Cook University.

Baird, Andrew, and Maynard, Jeffrey A. (2008) Coral adaptation in the face of climate change. Science, 320 (5874). pp. 315-316.

Berumen, Michael L, and Pratchett, Morgan S (2008) Trade-offs associated with dietary specialization in corallivorous butterflyfishes (Chaetodontidae: Chaetodon). Behavioral Ecology and Sociobiology, 62 (6). pp. 989-994.

Boitani, Luigi, Cowling, Richard M., Dublin, Holly T., Mace, Georgina M., Parrish, Jeff, Possingham, Hugh P., Pressey, Robert L., Rondinini, Carlo, and Wilson, Kerrie A. (2008) Change the IUCN protected area categories to reflect biodiversity outcomes. PLoS Biology, 6 (3). pp. 436-438.

Bourne, David G., Boyett, Holly V., Henderson, Meegan E., Muirhead, Andrew, and Willis, Bette L. (2008) Identification of a ciliate (Oligohymenophorea: Scuticociliatia) associated with brown band disease on corals of the Great Barrier Reef. Applied and Environmental Microbiology, 74 (3). pp. 883-888.

Birrell, Chico L., McCook, Laurence J., Willis, Bette L., and Harrington, Lindsay (2008) Chemical effects of macroalgae on larval settlement of the broadcast spawning coral Acropora millepora. Marine Ecology Progress Series, 362. pp. 129-137.

Birrell, Chico L., McCook, Laurence J., Willis, Bette L., and Diaz-Pulido, Guillermo A. (2008) Effects of benthic algae on the replenishment of corals and the implications for the resilience of coral reefs. Oceanography and Marine Biology: an annual review, 46. pp. 25-63.

Baird, Andrew H., and Kerr, Alexander M. (2008) Landscape analysis and tsunami damage in Aceh: comment on Iverson and Prasad (2007). Landscape Ecology, 23 (1). pp. 3-5.

Bellwood, David R., and Fulton, Christopher J. (2008) Sediment-mediated suppression of herbivory on coral reefs: decreasing resilience to rising sea levels and climate change. Limnology and Oceanography, 53 (6). pp. 2695-2701.

Baker, Ron, and Sheaves, Marcus (2007) Shallow-water refuge paradigm: conflicting evidence from tethering experiments in a tropical estuary. Marine Ecology Progress Series, 349. pp. 13-22.

Baird, Andrew H., Cumbo, Vivian R., Leggat, Bill, and Rodriguez-Lanetty, Mauricio (2007) Fidelity and flexibility in coral symbioses. Marine Ecology Progress Series, 347. pp. 307-309.

Bité, Juanita S., Campbell, Stuart J., McKenzie, Len J., and Coles, Robert G. (2007) Chlorophyll fluorescence measures of seagrasses Halophila ovalis and Zostera capricorni reveal differences in response to experimental shading. Marine Biology, 152 (2). pp. 405-414.

Burgess, Scott C., Kingsford, Michael J., and Black, Kerry P. (2007) Influence of tidal eddies and wind on the distribution of presettlement fishes around One Tree Island, Great Barrier Reef. Marine Ecology Progress Series, 341. pp. 233-242.

Baird, Andrew H., and Kerr, Alexander M. (2007) The dangerous myth of tsunami greenbelts: Response to Stone 2006. Science. p. 1.

Balston, Jacqueline Marie (2007) An examination of the impacts of climate variability and climate change on the wild barramundi (Lates calcarifer): a tropical estuarine fishery of north-eastern Queensland, Australia. PhD thesis, James Cook University.

Bondarenko, Olga, Kininmonth, Stuart, and Kingsford, Mike (2007) Coral reef sensor network deployment for collecting real time 3-D temperature data with correlation to plankton assemblages. In: Proceedings of International Conference on Sensor Technologies and Applications, pp. 204-209. From: SENSORCOMM 2007: International Conference on Sensor Technologies and Applications, 14-20 October 2007, Valencia, Spain.

Bondarenko, Olga, Kininmonth, Stuart, and Kingsford, Michael (2007) Underwater sensor networks, oceanography and plankton assemblages. In: Proceedings of the 2007 International Conference on Intelligent Sensors, Sensor Networks and Information Processing , pp. 657-662. From: International Conference on Intelligent Sensors, Sensor Networks and Information Processing (ISSNIP) 2007, 3-6 December 2007, Melbourne, Vic, Australia.

Berumen, Michael L., and Pratchett, Morgan S. (2006) Recovery without resilience: persistent disturbance and long-term shifts in the structure of fish and coral communities at Tiahura Reef, Moorea. Coral Reefs, 25 (4). pp. 647-653.

Baker, Ronald, and Sheaves, Marcus (2006) Visual surveys reveal high densities of large piscivores in shallow estuarine nurseries. Marine Ecology Progress Series, 323. pp. 75-82.

Bendell, Barry E. (2006) Interactions amongst invertebrates, epiphytes, and seagrasses in tropical intertidal meadows. PhD thesis, James Cook University.

Bellwood, David R, Hoey, Andrew S, Ackerman, John L, and Depczynski, Martial (2006) Coral bleaching, reef fish community phase shifts and the resilience of coral reefs. Global Change Biology, 12 (9). pp. 1587-1594.

Baird, Andrew (2006) Myth of green belts. Samudra Report, 44. pp. 14-19.

Benzie, J.A.H., and Smith-Keune, C. (2006) Microsatellite variation in Australian and Indonesian pearl oyster Pinctada maxima populations. Marine Ecology Progress Series, 314. pp. 197-211.

Baker, Ronald (2006) Piscivory and the functioning of shallow tropical estuarine nursery grounds. PhD thesis, James Cook University.

Blanco-Martin, Bernardo (2006) Dispersal of coral larvae: a modelling perspective on its determinants and implications. PhD thesis, James Cook University.

Bay, L.K., Buechler, K., Gagliano, M., and Caley, M.J. (2006) Intraspecific variation in the pelagic larval duration of tropical reef fishes. Journal of Fish Biology, 68 (4). pp. 1206-1214.

Berkes, F., Hughes, T.P., Steneck, R.S., Wilson, J.A., Bellwood, D.R., Crona, B., Folke, C., Gunderson, L.H., Leslie, H.M., Norberg, J., Nyström, M., Olsson, P., Österblom, H., Scheffer, M., and Worm, B. (2006) Globalization, roving bandits, and marine resources. Science, 311 (5767). pp. 1557-1558.

Baird, A.H., Salih, A., and Trevor-Jones, A. (2006) Fluorescence census techniques for the early detection of coral recruits. Coral Reefs, 25 (1). pp. 73-76.

Berumen, Michael Lee (2006) Influence of resource availability on lifehistory traits in coral-feeding butterflyfishes (Pisces: Chaetodontidae). PhD thesis, James Cook University.

Berumen, Michael L., and Pratchett, Morgan S. (2006) Effects of resource availability on the competitive behaviour of butterflyfishes (Chaetodontidae). In: Proceedings of the International Coral Reef Symposium, pp. 644-650. From: 10th International Coral Reef Symposium, 28 June - 2 July 2004, Okinawa Convention Cente, Okinawa, Japan.

Boyett, Holly Virginia (2006) The ecology and microbiology of black band disease and brown band syndrome on the Great Barrier Reef. Masters (Research) thesis, James Cook University.

Baird, Andrew H., Campbell, Stuart J., Anggoro, Aji W., Ardiwijaya, Rizya L., Fadli, Nur, Herdiana, Yudi, Kartawijaya, Tasrif, Mahyiddin, Dodent, Mukminin, Ahmad, Pardede, Shinta T., Pratchett, Morgan S., Rudi, Edi, and Siregar, Achis M. (2005) Acehnese reefs in the wake of the Asian tsunami. Current Biology, 15 (21). pp. 1926-1930.

Bergenius, Mikaela A.J., McCormick, Mark I., Meekan, Mark G., and Robertson, D. Ross (2005) Environmental influences on larval duration, growth and magnitude of settlement of a coral reef fish. Marine Biology, 147 (2). pp. 291-300.

Baker, Ronald, and Sheaves, Marcus (2005) Redefining the piscivore assemblage of shallow estuarine nursery habitats. Marine Ecology Progress Series, 291. pp. 197-213.

Browne, J.G., and Kingsford, M.J. (2005) A commensal relationship between the scyphozoan medusae Catostylus mosaicus and the copepod Paramacrochiron maximum. Marine Biology, 146 (6). pp. 1157-1168.

Berumen, Michael L., Pratchett, Morgan S., and McCormick, Mark I. (2005) Within-reef differences in diet and body condition of coral-feeding butterflyfishes (Chaetodontidae). Marine Ecology Progress Series, 287. pp. 217-227.

Brodie, Jon, Fabricius, Katharina, De'ath, Glenn, and Okaji, Ken (2005) Are increased nutrient inputs responsible for more outbreaks of crown-of-thorns starfish? an appraisal of the evidence. Marine Pollution Bulletin, 51 (1-4). pp. 266-278.

Buechler, Karin (2005) An evaluation of geographic variation in the life history and behaviour of anemonefishes: A common-garden approach. PhD thesis, James Cook University.

Bastidas, C., Fabricius, K.E., and Willis, B.L. (2004) Demographic aspects of the soft coral Sinularia flexibilis leading to local dominance on coral reefs. Hydrobiologia, 530 (1-3). pp. 433-441.

Bellwood, David R., van Herwerden, Lynne, and Konow, Nicolai (2004) Evolution and biogeography of marine angelfishes (Pisces: Pomacanthidae). Molecular Phylogenetics and Evolution, 33 (1). pp. 140-155.

Bellwood, D.R., Hughes, T.P., Folke, C., and Nystrom, M. (2004) Confronting the coral reef crisis. Nature, 429 (6994). pp. 827-833.

Beukers-Stewart, B.D., and Jones, G.P. (2004) The influence of prey abundance on the feeding ecology of two piscivorous species of coral reef fish. Journal of Experimental Marine Biology and Ecology, 299 (2). pp. 155-184.

Baird, A.H., Babcock, R.C., and Mundy, C.P. (2003) Habitat selection by larvae influences the depth distribution of six common coral species. Marine Ecology Progress Series, 252. pp. 289-293.

Bean, K., Mapstone, B.D., Davies, C.R., Murchie, C.D., and Williams, A.J. (2003) Gonad development and evidence of protogyny in the red-throat emperor on the Great Barrier Reef. Journal of Fish Biology, 62 (2). pp. 299-310.

Birrell, Chico Liam (2003) Influences of benthic algae on coral settlement and post-settlement survival: implications for the recovery of disturbed and degraded reefs. Masters (Research) thesis, James Cook University.

Burrows, Damien Wayne (2003) The role of insect leaf herbivory on the mangroves Avicennia marina and Rhizophora stylosa. PhD thesis, James Cook University.

Bastidas, C., Benzie, J.A.H., and Fabricius, K.E. (2002) Genetic differentiation among populations of the brooding soft coral Clavularia koellikeri on the Great Barrier Reef. Coral Reefs, 21 (3). pp. 233-241.

Bean, Kyi, Jones, Geoffrey P., and Caley, M. Julian (2002) Relationships among distribution, abundance and microhabitat specialisation in a guild of coral reef triggerfish (family Balistidae). Marine Ecology - Progress Series, 233. pp. 263-272.

Baird, Andrew H,, Bellwood, David R., Connell, Joseph H., Cornell, Howard V., Hughes, Terry P., Karlson, Ronald H., and Rosen, Brian R. (2002) Coral reef biodiversity and conservation. Science, 296 (5570). pp. 1026-1028.

Bastidas, Ana Carolina (2002) Population dynamics and genetic structure of locally dominant species on coral reefs: a case study of the soft corals Sinularia flexibilis and Clavularia koellikeri. PhD thesis, James Cook University.

Bay, L.K., Jones, G.P., and McCormick, M.I. (2001) Habitat selection and aggression as determinants of spatial segregation among damselfish on a coral reef. Coral Reefs, 20 (3). pp. 289-298.

Brodie, Gilianne D., Klussmann-Kolb, Annette, and Gosliner, Terrence M. (2001) Anatomy and histology of a new species of Enotepteron (Cephalaspidea: Gastropteridae) from tropical northeastern Australia. The Veliger, 44 (4). pp. 362-369.

Bellwood, David R., and Hughes, Terry P. (2001) Regional-scale assembly rules and biodiversity of coral reefs. Science, 292 (5521). pp. 1532-1534.

Baird, Andrew Hamilton (2001) The ecology of coral larvae: settlement patterns, habitat selection and the length of the larval phase. PhD thesis, James Cook University.

Baird, A.H., Sadler, C., and Pitt, M. (2001) Synchronous spawning of Acropora in the Solomon Islands. Coral Reefs, 19 (3). p. 286.

Bastidas, C., Benzie, J.A.H., Uthicke, S., and Fabricius, K. (2001) Genetic differentiation among populations of a broadcast spawning soft coral, Sinularia flexibilis, on the Great Barrier Reef. Marine Biology, 138 (3). pp. 517-525.

Bellwood, D.R., and Wainwright, P.C. (2001) Locomotion in labrid fishes: implications for habitat use and cross-shelf biogeography on the Great Barrier Reef. Coral Reefs, 20 (2). pp. 139-150.

Bellwood, David R., and Fisher, Rebecca (2001) Relative swimming speeds in reef fish larvae. Marine Ecology-Progress Series, 211. pp. 299-303.

Brodie, Gilianne D. (2001) Some comparative histological aspects of the dendrodorid genera Doriopsilla and Dendrodoris (Opisthobranchia: Nudibranchia). Bollettino Malacologico, 37 (5-8). pp. 99-104.

Baird, Andrew H., Pratchett, Morgan S., Gibson, Deborah J., Koziumi, Noriko, and Marquis, Christopher P. (2001) Variable palatability of coral eggs to a planktivorous fish. Marine and Freshwater Research, 52 (6). pp. 865-868.

Baird, A.H., and Hughes, T.P. (2000) Competitive dominance by tabular corals: an experimental analysis of recruitment and survival of understorey assemblages. Journal of Experimental Marine Biology and Ecology, 251 (1). pp. 117-132.

Baird, A.H., and Babcock, R.C. (2000) Morphological differences among three species of newly settled pocilloporid coral recruits. Coral Reefs, 19 (2). pp. 179-183.

Bigelow, P.R., and Alexander, C.G. (2000) Diatoms on the cirri of tropical barnacles. Journal of the Marine Biological Association of the United Kingdom, 80 (4). pp. 737-738.

Bellwood, David R., and Randall, John E. (2000) Pseudojuloides severnsi, a new species of wrasse from Indonesia and Sri Lanka (Perciformes: Labridae). Journal of South Asian Natural History, 5 (1). pp. 1-5.

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Fisher, R., and Bellwood, D.R. (2002) A light trap design for stratum-specific sampling of reef fish larvae. Journal of Experimental Marine Biology and Ecology, 269 (1). pp. 27-37.

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Graham, Erin Marie (2012) The energetics of scleractinian coral larvae and implications for dispersal. PhD thesis, James Cook University.

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Gardiner, Naomi Marcelle (2010) Habitat specialisation, niche overlap and site fidelity in a vulnerable family of coral reef fishes – the cardinalfish (Apogonidae). PhD thesis, James Cook University.

Graham, Nicholas, Spalding, Mark D., and Sheppard, Charles R.C. (2010) Reef shark declines in remote atolls highlight the need for multi-faceted conservation action. Aquatic Conservation: marine and freshwater ecosystems , 20 (5). pp. 543-548.

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Graham, N.A.J., Wilson, S.K., Pratchett, M.S., Polunin, N.V.C., and Spalding, M.D. (2009) Coral mortality versus structural collapse as drivers of corallivorous butterflyfish decline. Biodiversity and Conservation, 18 (12). pp. 3325-3336.

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Gagliano, Monica, and McCormick, Mark I. (2009) Hormonally mediated maternal effects shape offspring survival potential in stressful environments. Oecologia, 160 (4). pp. 657-665.

Graham, N.A.J., Purkis, S.J., and Harris, A. (2009) Diurnal, land-based predation on shore crabs by moray eels in the Chagos Archipelago. Coral Reefs, 28 (2). p. 397.

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Graham, Nicholas A.J. (2007) Ecological versatility and the decline of coral feeding fishes following climate driven coral mortality. Marine Biology, 153 (2). pp. 119-127.

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Guenther, Jana (2007) Natural antifouling defences of tropical sea stars. PhD thesis, James Cook University.

Graham, Nicholas A.J., McClanahan, Timothy R., Letourneur, Yves, and Galzin, Rene (2007) Anthropogenic stressors, inter-specific competition and ENSO effects on a Mauritian coral reef. Environmental Biology of Fishes, 78 (1). pp. 57-69.

Graham, Nicholas A.J., Wilson, Shaun K., Jennings, Simon, Polunin, Nicholas V.C., Robinson, Jan, Bijoux, Jude P., and Daw, Tim M. (2007) Lag effects in the impacts of mass coral bleaching on coral reef fish, fisheries, and ecosystems. Conservation Biology, 21 (5). pp. 1291-1300.

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Guinotte, John Michael (2006) Understanding environmental controls and predicting climate change effects on the health and occurrence of coral communities and their constituent organisms. PhD thesis, James Cook University.

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Gristina, Michele, and Gagliano, Monica (2004) Performance of traditional rush and modern plastic traps on the capture of Palinurus elephas (Fabricius, 1787) in laboratory tanks. Fisheries Research, 67 (2). pp. 235-239.

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Hobbs, Jean-Paul A., Jones, Geoffrey P., Munday, Philip L., Connolly, Sean R., and Srinivasan, Maya (2012) Biogeography and the structure of coral reef fish communities on isolated islands. Journal of Biogeography, 39 (1). pp. 130-139.

Harry, A.V., Morgan, J.A.T., Ovenden, J.R., Tobin, A.J., Welch, D.J., and Simpfendorfer, C.A. (2012) Comparison of the reproductive ecology of two sympatric blacktip sharks (Carcharhinus limbatus and Carcharhinus tilstoni) off north-eastern Australia with species identification inferred from vertebral counts. Journal of Fish Biology, 81 (4). pp. 1-9.

Howard, William R., Nash, Merinda, Anthony, Kenneth, Schmutter, Katherine, Bostock, Helen, Bromhead, Donald, Byrne, Maria, Currie, Kim, Diaz-Pulido, Guillermo, Eggins, Stephen, Ellwood, Michael, Eyre, Bradley, Haese, Ralf, Hallegraeff, Gustaaf, Hill, Katy, Hurd, Catriona, Law, Cliff, Lenton, Andrew, Matear, Richard, McNeil, Ben, McCulloch, Malcolm, Muller, Marius N., Munday, Philip, Opdyke, Bradley, Pandolfi, John M., Richards, Russell, Roberts, Donna, Russell, Bayden D., Smith, Abigail M., Tilbrook, Bronte, Waite, Anya, and Williamson, Jane (2012) Ocean acidification. In: Poloczanska, E.S., Hobday, A.J., and Richardson, A.J., (eds.) A Marine Climate Change Impacts and Adaptation Report Card for Australia. CSIRO Marine and Atmospheric Research, Brisbane, QLD, pp. 113-150.

Hussey, N.E., MacNeil, M.A., Olin, J. A., McMeans, B. C., Kinney, Michael, Chapman, D. D., and Fisk, A. T. (2012) Stable isotopes and elasmobranchs: tissue types, methods, applications and assumptions. Journal of Fish Biology, 80 (5). pp. 1449-1484.

Hoey, Andrew, Bellwood, David R., and Barnett, Adam (2012) To feed or to breed: morphological constraints of mouthbrooding in coral reef cardinalfishes. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1737). pp. 2426-2432.

Haapkylä, Jessica (2011) Dynamics and drivers of coral disease on Indo-Pacific reefs. PhD thesis, James Cook University.

Hemery, L.G., Galton-Fenzi, B., Améziane, N., Riddle, M.J., Rintoul, S.R., Beaman, R.J., Post, A.L., and Eléaume, M. (2011) Predicting habitat preferences for Anthometrina adriani (Echinodermata) on the East Antarctic continental shelf. Marine Ecology Progress Series, 441. pp. 105-116.

Hoogenboom, M.O., Connolly, S.R., and Anthony, K.R.N. (2011) Biotic and abiotic correlates of tissue quality for common scleractinian corals. Marine Ecology Progress Series, 438. pp. 119-128.

Hobbs, J-P. A., Jones, G.P., and Munday, P.L. (2011) Extinction risk in endemic marine fishes. Conservation Biology, 25 (5). pp. 1053-1055.

Hsieh, Hernyi J., Chen, Koa-Song, Lin , Yihan I., Huang , Yuanchao A., Baird, Andrew H., Tsai , Wan-Sen, Su, Wei-Cheng, and Chen, Chaolun A. (2011) Establishment of a No-take area (NTA) could not guarantee the preservation of coral communities in Chinwan Inner Bay, Penghu, Taiwan. Zoological Studies, 50 (4). pp. 443-453.

Heupel, Michelle R., and Simpfendorfer, Colin A. (2011) Estuarine nursery areas provide a low-mortality environment for young bull sharks Carcharhinus leucas. Marine Ecology Progress Series, 433. pp. 237-244.

Heupel, Michelle R., Knip, Danielle M., de Lestang, Paul, Allsop, Quentin A., and Grace, Blair S. (2011) Short-term movement of barramundi in a seasonally closed freshwater habitat. Aquatic Biology, 12 (2). pp. 147-155.

Hobbs, Jean-Paul A. (2011) Reef fishes on isolated islands: community structure, endemism and extinction. PhD thesis, James Cook University.

Holmes, Thomas H., and McCormick, Mark I. (2011) Response across a gradient: behavioural reactions of newly settled fish to predation cues. Animal Behaviour, 81 (3). pp. 543-550.

Hoey, Andrew S., and Bellwood, David R. (2011) Suppression of herbivory by macroalgal density: a critical feedback on coral reefs? Ecology Letters, 14 (3). pp. 267-273.

Huang, Y.-C.A., Hsieh, H.J., Huang, S.-C., Meng, P.-J., Chen, Y.-S., Keshavmurthy, S., Nozawa, Y., and Chen, C.A. (2011) Nutrient enrichment caused by marine cage culture and its influence on subtropical coral communities in turbid waters. Marine Ecology Progress Series, 423. pp. 83-93.

Haapkylä, Jessica, Unsworth, Richard K.F., Flavell, Mike, Bourne, David G., Schaffelke, Britta, and Willis, Bette L. (2011) Seasonal rainfall and runoff promote coral disease on an inshore reef. PLoS ONE, 6 (2). pp. 1-10.

Hughes, Terry (2011) The future of marine governance. Solutions, 2 (1). pp. 1-3.

Huang, Danwei, Licuanan, Wilfredo Y., Baird, Andrew H. , and Fukami, Hironobu (2011) Cleaning up the 'Bigmessidae': molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae. BMC Evolutionary Biology, 11. pp. 1-13.

Herler, Juergen, Munday, Philip L., and Hernaman, Vanessa (2011) Gobies on coral reefs. In: Patzner, Robert A., Van Tassel, James L., Kovacic, Marcelo, and Kapoor, B.G., (eds.) The Biology of Gobies. Science Publishers, Boca Raton, FL, pp. 493-529.

Hoey, Andrew, Pratchett, Morgan, and Cvitanovic, Christopher (2011) High macroalgal cover and low coral recruitment undermines the potential resilience of the world's southernmost coral reef assemblages. PLoS ONE, 6 (10). e25824.

Hughes, T.P., Bellwood, D.R., Baird, A.H., Brodie, J., Bruno, J.F., and Pandolfi, J.M. (2011) Shifting base-lines, declining coral cover, and the erosion of reef resilience: comment on Sweatman et al. (2011). Coral Reefs, 30 (3). pp. 653-660.

Hoegh-Guldberg, Ove, Andréfouët, Serge, Fabricius, Katharina E., Diaz-Pulido, Guillermo, Lough, Janice M., Marshall, Paul A., and Pratchett, Morgan S. (2011) Vulnerability of coral reefs in the tropical Pacific to climate change. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, Noumea, New Caledonia, pp. 251-296.

Hughes, Terry P., Graham, Nicholas A.J., Jackson, Jeremy B.C., Mumby, Peter J., and Steneck, Robert S. (2010) Rising to the challenge of sustaining coral reef resilience. Trends in Ecology & Evolution, 25 (11). pp. 633-642.

Hobbs, J.-P. A., and McDonald, C.A. (2010) Increased seawater temperature and decreased dissolved oxygen triggers fish kill at the Cocos (Keeling) Islands, Indian Ocean. Journal of Fish Biology, 77 (6). pp. 1219-1229.

Hanson, N.N., Wurster, C.M., EIMF, , and Todd, C.D. (2010) Comparison of secondary ion mass spectrometry and micromilling/continuous flow isotope ratio mass spectrometry techniques used to acquire intra-otolith δ18O values of wild Atlantic salmon (Salmo salar). Rapid Communications in Mass Spectrometry, 24 (17). pp. 2491-2498.

Hoey, A.S., and Bellwood, D.R. (2010) Cross-shelf variation in browsing intensity on the Great Barrier Reef. Coral Reefs, 29 (2). pp. 499-508.

Hoey, Andrew Scott (2010) The ecosystem role of macroalgal browsing fishes on coral reefs. PhD thesis, James Cook University.

Hobbs, Jean-Paul A., Ayling, Anthony M., Choat, J. Howard, Gilligan, Justin J., McDonald, Christian A., Neilson, Joseph, and Newman, Stephen J. (2010) New records of marine fishes illustrate the biogeographic importance of Christmas Island, Indian Ocean. Zootaxa, 2422. pp. 63-68.

Hoey, A.S., and Bellwood, D.R. (2010) Damselfish territories as a refuge for macroalgae on coral reefs. Coral Reefs, 29 (1). pp. 107-118.

Hanafy, M.H., Aamer, M.A., Habib, M., Rouphael, Anthony B., and Baird, Andrew H. (2010) Synchronous reproduction of corals in the Red Sea. Coral Reefs, 29 (1). pp. 119-124.

Hobbs, Jean-Paul, and Frisch, Ashley J. (2010) Coral disease in the Indian Ocean: taxonomic susceptibility, spatial distribution and the role of host density on the prevalence of white syndrome. Diseases of Aquatic Organisms, 89 (1). pp. 1-8.

Halford, Andrew Robert (2010) Disturbance effects on tropical reef fish assemblages at large spatial and temporal scales. PhD thesis, James Cook University.

Holmes, Thomas H., and McCormick, Mark I. (2010) Size-selectivity of predatory reef fish on juvenile prey. Marine Ecology Progress Series, 399. pp. 273-283.

Hoey, Andrew, and Bellwood, David (2010) Among-habitat variation in herbivory on Sargassum spp. on a mid-shelf reef in the northern Great Barrier Reef. Marine Biology, 157 (1). pp. 189-200.

Hamann, M., Godfrey, M.H., Seminoff, J.A., Arthur, K., Barata, P.C.R., Bjorndal, K.A., Bolten, A.B., Broderick, A.C., Campbell, L.M., Carreras, C., Casale, P., Chaloupka, M., Chan, S.K.F, Coyne, M.S., Crowder, L.B., Diez, C.E., Dutton, P.H., Epperly, S.P., FitzSimmons, N.N., Formia, A., Girondot, M., Hays, G.C., Cheng, I.J., Kaska, Y., Lewison, R., Mortimer, J.A., Nichols, W.J., Reina, R.D., Shanker, K., Spotila, J.R., Tomás, J., Wallace, B.P., Work, T.M., Zbinden, J., and Godley, B.J. (2010) Global research priorities for sea turtles: informing management and conservation in the 21st century. Endangered Species Research, 11 (3). pp. 245-269.

Hobbs, Jean-Paul A,, Jones, G.P., and Munday, P.L. (2010) Rarity and extinction risk in coral reef angelfishes on isolated islands: interrelationships among abundance, geographic range size and specialisation. Coral Reefs, 29 (1). pp. 1-11.

Hazevoet, Cornelis J., Monteiro, Vanda, López, Pedro, Varo, Nuria, Torda, Gergely, Berrow, Simon, and Gravanita, Barbara (2010) Recent data on whales and dolphins (Mammalia: Cetacea) from the Cape Verde Islands, including records of four taxa new to the archipelago. Zoologia Caboverdiana, 1 (2). pp. 75-99.

Hoey, A.S. (2010) Size matters: macroalgal height influences the feeding response of coral reef herbivores. Marine Ecology Progress Series, 411. pp. 299-302.

Holmes, Thomas H., and McCormick, Mark I. (2010) Smell, learn and live: the role of chemical alarm cues in predator learning during early life history in a marine fish. Behavioural Processes, 83 (3). pp. 299-305.

Haapkylä, J., Melbourne-Thomas, J., Flavell, M., and Willis, B.L. (2010) Spatiotemporal patterns of coral disease prevalence on Heron Island, Great Barrier Reef, Australia. Coral Reefs, 29 (4). pp. 1035-1045.

Herdiana, Yudi, Campbell, Stuart, and Baird, Andrew (2010) Systematic marine conservation planning: towards a marine representative areas network in Nanggruh Aceh Darussalam, Indonesia. In: Proceedings of the 11th International Coral Reef Symposium, pp. 1112-1115. From: 11th International Coral Reef Symposium, 07 - 11 July 2008, Fort Lauderdale, FL, USA.

Hoey, Andrew S., and Bellwood, David R. (2009) Limited functional redundancy in a high diversity system: single species dominates key ecological process on coral reefs. Ecosystems, 12 (8). pp. 1316-1328.

Hobbs, J-P.A., Frisch, A.J., Hamanaka, T., McDonald, C.A., Gilligan, J.J., and Neilson, J. (2009) Seasonal aggregation of juvenile whale sharks (Rhincodon typus) at Christmas Island, Indian Ocean. Coral Reefs, 28 (3). p. 577.

Hughes, A. Randall, Williams, Susan L., Duarte, Carlos M., Heck Jr, Kenneth L., and Waycott, Michelle (2009) Associations of concern: declining seagrasses and threatened dependent species. Frontiers in Ecology and the Environment, 7 (5). pp. 242-246.

Hobbs, Jean-Paul A., Frisch, Ashley J., Allen, Gerald R., and van Herwerden, Lynne (2009) Marine hybrid hotspot at Indo-Pacific biogeographic border. Biology Letters, 5 (2). pp. 258-261.

Hoogenboom, Mia O., and Connolly, Sean R. (2009) Defining fundamental niche dimensions of corals: synergistic effects of colony size, light, and flow. Ecology, 90 (3). pp. 767-780.

Howells, E.J., van Oppen, M.J.H., and Willis, B.L. (2009) High genetic differentiation and cross-shelf patterns of genetic diversity among Great Barrier Reef populations of Symbiodinium. Coral Reefs, 28 (1). pp. 215-225.

Holmes, Thomas H., and McCormick, Mark I. (2009) Influence of prey body characteristics and performance on predator selection. Oecologia, 159 (2). pp. 401-413.

Haapkyla, Jessica, Seymour, Adrian S., Barneah, Orit, Brickner, Itzchak, Hennige, Sebastian, Suggett, David, and Smith, David (2009) Association of Waminoa sp. (Acoela) with corals in the Wakatobi Marine Park, South-East Sulawesi, Indonesia. Marine Biology, 156. pp. 1021-1027.

Hanson, N.N., Wurster, C.M., Bird, M.I., and Boyd, I.L. (2009) Intrinsic and extrinsic forcing in life histories: patterns of growth and stable isotopes in male Antarctic fur seal teeth. Marine Ecology Progress Series, 388. pp. 263-272.

Howard, W., de Salas, M, Cheal, A., Lough, J., McKinnon, D., Meekan, M., Sweatman, H., Coleman, M., Chambers, L., Dunlop, N., Church, J., Dowdney, J., Feng, M., Griffiths, S., Hemer, M., Hobday, A., Mapstone, B., Matear, R., Poloczanska, E., Richardson, A., Ridgway, K., Risbey, J., Thompson, P., Thresher, R., Weller, E., Saintilan, N., Wilson, S., Lenanton, R., Hosja, W., Moore, P., Wernberg, T., Marshall, P., Connolly, R., McDonald, J., Hill, K., Congdon, B, Devney, C., Fuentes, M., Graham, N., Hamann, M., Hughes, T., Kingsford, M., Munday, P., Pratchett, M., Sheaves, M., Goodwin, I., Raftos, D., Williamson, J., Beardall, J., Brett, S., Waschka, M., Dann, P., Ward, T., Edgar, G., Swadling, K., Connell, S., Russell, B., Lukoschek, V., Havenhand, J., McGregor, S., Jenkins, G., Campbell, A., Steinberg, P., Anthony, K., Lovelock, C., Skilleter, G., Figueira, W., Davidson, J., Hallegraeff, G., Holbrook, N., Booth, D., Doblin, M., Kendrick, G., Smale, D., Parker, L., and Ross, P. (2009) Marine Climate Change in Australia: impacts and adaptation responses: 2009 report card. Report. National Climate Change Adaptation Research Facility (NCCARF).

Hughes, Terry P. (2009) Seascape patterns and dynamics of coral reefs. In: Levin, Simon A., (ed.) The Princeton Guide to Ecology. Princeton University Press, Princeton, New Jersey, USA, pp. 482-487.

Haapkyla, Jessica, Unsworth, Richard K.F., Seymour, Adrian S., Melbourne-Thomas, Jessica, Flavell, Mike, Willis, Bette L., and Smith, David J. (2009) Spatio-temporal coral disease dynamics in the Wakatobi Marine National Park, South-East Sulawesi, Indonesia. Diseases of Aquatic Organisms, 87 (1-2). pp. 105-115.

Horne, John B., van Herwerden, Lynne, Choat, J. Howard, and Robertson, D.R. (2008) High population connectivity across the Indo-Pacific: congruent lack of phylogeographic structure in three reef fish congeners. Molecular Phylogenetics and Evolution, 49 (2). pp. 629-638.

Heupel, Michelle R., Reiss, Katie. L., Yeiser, Beau G., and Simpfendorfer, Colin A. (2008) Effects of biofouling on performance of moored data logging acoustic receivers. Limnology and Oceanography: Methods, 6. pp. 327-335.

Hoogenboom, Mia O., Connolly, Sean R., and Anthony, Kenneth R.N. (2008) Interactions between morphological and physiological plasticity optimize energy acquisition in corals. Ecology, 89 (4). pp. 1144-1154.

Hoey, A. S., and Bellwood, D. R. (2008) Cross-shelf variation in the role of parrotfishes on the Great Barrier Reef. Coral Reefs, 27 (1). pp. 37-47.

Hamilton, R.J., Adams, S., and Choat, J.H. (2008) Sexual development and reproductive demography of the green humphead parrotfish (Bolbometopon muricatum) in the Solomon Islands. Coral Reefs, 27 (1). pp. 153-163.

Harold, Antony S., Winterbottom, Richard, Munday, Philip L., and Chapman, Robert W. (2008) Phylogenetic relationships of Indo-Pacific coral gobies of the genus Gobiodon (Teleostei: Gobiidae) based on morphological and molecular data. Bulletin of Marine Science, 82 (1). pp. 119-136.

Hueter, Robert E., and Simpfendorfer, Colin A. (2008) Case study: trends in blue shark abundance in the western north Atlantic as determined by a fishery-independent survey. In: Camhi, Merry D., Pikitch, Ellen K., and Babcock, Elizabeth A., (eds.) Sharks of the Open Ocean: biology, fisheries & conservation. Blackwell Publishing, Oxford, UK, pp. 236-241.

Hobbs, J.-P.A, and Salmond, J.K. (2008) Cohabitation of Indian and Pacific Ocean species at Christmas and Cocos (Keeling) Islands. Coral Reefs, 27 (4). p. 933.

Heupel, M.R., Williams, A.J., Welch, D.J., Mapstone, B.D., Ballagh, A., and Simpfendorfer, C.A. (2008) Compilation of information on the interaction of reef sharks with the reef line fishery in the Great Barrier Reef Marine Park: final report to the Great Barrier Reef Marine Park Authority. Report. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia.

Harvell, C.D., Woodley, C., Raymundo, L., and Sato, Y. (2008) Detecting and assessing outbreaks. In: Raymundo, Laurie J., Couch, Courtney S., and Harvell, C. Drew, (eds.) Coral Disease Handbook: guidelines for assessment monitoring and management. Coral Reef Targeted Research and Capacity Building for Management Program, pp. 65-74.

Hughes, T.P. (2008) Human impact on coral reefs. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 85-94.

Heupel, Michelle R., and Simpfendorfer, Colin A. (2008) Influence of salinity on the distribution of young bull sharks in an estuarine environment. Aquatic Biology, 1. pp. 277-289.

Heupel, Michelle R., and Simpfendorfer, Colin A. (2008) Movement and distribution of young bull sharks Carcharhinus leucas in a variable estuarine environment. Aquatic Biology, 1. pp. 277-289.

Heatwole, H., and Lukoschek, V. (2008) Reptiles. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 342-348.

Hobbs, J.P., Choat, J.H., Robbins, W.D., Van Herwerden, Lynne, Feary, D.A., and Ayling, A.M. (2008) Unique fish assemblages at world's southernmost oceanic coral reefs, Elizabeth and Middleton Reefs, Tasman Sea, Australia. Coral Reefs, 27 (1). p. 15.

Hoegh-Guldberg, Ove, Hughes, Terry, Marsh, Helene, Pandolfi, John, and Possingham, Hugh (2008) Urgent need for improved protection of the Coral Sea. In: Zethovan, Imogen, (ed.) An Australian Coral Sea Heritage Park. Pew Charitable Trusts, Philadelphia, USA, pp. 11-13.

Hamann, Mark, Jessop, Tim S., and Schäuble, Chloe S. (2007) Fuel use and corticosterone dynamics in hatchling green sea turtles (Chelonia mydas) during natal dispersal. Journal of Experimental Marine Biology and Ecology, 353 (1). pp. 13-21.

Heupel, Michelle (2007) Exiting Terra Ceia Bay: examination of cues stimulating migration from a summer nursery area. In: McCandless, Camilla T., Kohler, Nancy E., and Pratt Jr., Harold L., (eds.) Shark Nursery Grounds of the Gulf of Mexico and the East Coast Waters of the United States. American Fisheries Society, Bethesda MD, pp. 265-280.

Hughes, Terence P., Gunderson, Lance H., Folke, Carl, Baird, Andrew H., Bellwood, David, Berkes, Fikret, Crona, Beatrice, Helfgott, Ariella, Leslie, Heather, Norberg, Jon, Nyström, Marcus, Olsson, Per, Österblom, Henrik, Scheffer, Marten, Schuttenberg, Heidi, Steneck, Robert S., Tengo, Maria, Troell, Max, Walker, Brian, Wilson, James, and Worm, Boris (2007) Adaptive management of the Great Barrier Reef and the Grand Canyon World Heritage Areas. Ambio, 36 (7). pp. 586-592.

Hemmrich, Georg, Miller, David J., and Bosch, Thomas C.G. (2007) The evolution of immunity: a low-life perspective. Trends in Immunology, 28 (10). pp. 449-454.

Hernaman, V., and Munday, P.L. (2007) Evolution of mating systems in coral reef gobies and constraints on mating system plasticity. Coral Reefs, 26 (3). pp. 585-595.

Hoey, J., McCormick, M.I., and Hoey, A.S. (2007) Influence of depth on sex-specific energy allocation patterns in a tropical reef fish. Coral Reefs, 26 (3). pp. 603-613.

Heupel, M.R., and Bennett, M.B. (2007) Estimating abundance of reef-dwelling sharks: a case study of the epaulette Shark, Hemiscyllium ocellatum (Elasmobranchii: Hemiscyllidae). Pacific Science, 61 (3). pp. 383-394.

Heupel, Michelle R., Carlson, John K., and Simpfendorfer, Colin A. (2007) Shark nursery areas: concepts, definition, characterization and assumptions. Marine Ecology Progress Series, 337. pp. 287-297.

Hughes, Terence P., Rodrigues, Maria J., Bellwood, David R., Ceccarelli, Daniela, Hoegh-Guldberg, Ove, McCook, Laurence, Moltschaniwskyj, Natalie, Pratchett, Morgan S., Steneck, Robert S., and Willis, Bette (2007) Phase shifts, herbivory, and the resilience of coral reefs to climate change. Current Biology, 17 (4). pp. 360-365.

Hughes, Terry P., Bellwood, David R., Folke, Carl S., McCook, Laurence J., and Pandolfi, John M. (2007) No-take areas, herbivory and coral reef resilience. Trends in Ecology & Evolution, 22 (1). pp. 1-3.

Huggett, Megan J., Williamson, Jane E., de Nys, Rocky, Kjelleberg, Staffan, and Steinberg, Peter D. (2006) Larval settlement of the common Australian sea urchin Heliocidaris erythrogramma in response to bacteria from the surface of coralline algae. Oecologia, 149 (4). pp. 604-619.

Hoogenboom, Mia O., Anthony, Kenneth R.N., and Connolly, Sean R. (2006) Energetic cost of photoinhibition in corals. Marine Ecology Progress Series, 313. pp. 1-12.

Heupel, Michelle R., Simpfendorfer, Colin A., Collins, Angela B., and Tyminski, John P. (2006) Residency and movement patterns of bonnethead sharks, Sphyrna tiburo, in a large Florida estuary. Environmental Biology of Fishes, 76. pp. 47-67.

Holley, David K., Lawler, Ivan R., and Gales, Nicholas J. (2006) Summer survey of dugong distribution and abundance in Shark Bay reveals additional key habitat area. Wildlife Research, 33 (3). pp. 243-250.

Hixon, Mark A., and Jones, Geoffrey P. (2005) Competition, predation, and density-dependent mortality in demersal marine fishes. Ecology, 86 (11). pp. 2847-2859.

Hughes, Terence P., Bellwood, David R., Folke, Carl, Steneck, Robert S., and Wilson, James (2005) New paradigms for supporting the resilience of marine ecosystems. Trends in Ecology and Evolution, 20 (7). pp. 380-386.

Hernaman, V., and Munday, P.L. (2005) Life-history characteristics of coral reef gobies. I. Growth and life-span. Marine Ecology Progress Series, 290. pp. 207-221.

Hernaman, V., and Munday, P.L. (2005) Life-history characteristics of coral reef gobies. II. Mortality rate, mating system and timing of maturation. Marine Ecology Progress Series, 290. pp. 223-237.

Heupel, M. R., and Simpfendorfer, C. A. (2005) Quantitative analysis of aggregation behaviour in juvenile blacktip sharks. Marine Biology, 147 (5). pp. 1239-1249.

Harrington, Lindsay, Fabricius, Katharina, Eaglesham, Geoff, and Negri, Andrew (2005) Synergistic effects of diuron and sedimentation on photosynthesis and survival of crustose coralline algae. Marine Pollution Bulletin, 51 (1-4). pp. 415-427.

Hobbs, Jean-Paul A., Munday, Philip L., and Jones, Geoffrey P. (2004) Social induction of maturation and sex determination in a coral reef fish. Proceedings of the Royal Society of London Series B: biological sciences, 271 (1553). pp. 2109-2114.

Heupel, Michelle R., Simpfendorfer, Colin A., and Hueter, Robert E. (2004) Estimation of shark home ranges using passive monitoring techniques. Environmental Biology of Fishes, 71 (2). pp. 135-142.

Hobbs, J.-P., and Munday, P.L. (2004) Intraspecific competition controls spatial distribution and social organisation of the coral-dwelling goby Gobiodon histrio. Marine Ecology Progress Series, 278. pp. 253-259.

Hoey, Andrew S., and McCormick, Mark I. (2004) Selective predation for low body condition at the larval-juvenile transition of a coral reef fish. Oecologia, 139 (1). pp. 23-29.

Hodgson, Amanda Jane (2004) Dugong behaviour and responses to human influences. PhD thesis, James Cook University.

Harrington, Lindsay Mortan (2004) Ecology of crustose coralline algae; interactions with scleractinian corals and responses to environmental conditions. PhD thesis, James Cook University.

Hueter, R.E., Heupel, M.R., Heist, E.J., and Keeney, D.B. (2004) The implications of philopatry in sharks for the management of shark fisheries. Journal of Northwest Atlantic Fishery Science , 35. pp. 239-247.

Hughes, T.P., Baird, A.H., Bellwood, D.R., Connolly, S.R., Folke, C., Grosberg, R., Hoegh-Guldberg, O., Jackson, J.B.C., Kleypas, J., Lough, J.M., Marshall, P., Nyström, M., Palumbi, S.R., Pandolfi, J.M., Rosen, B., and Roughgarden, J. (2003) Response to Causes of coral reef degradation [Aronson et al. (2003) Causes of coral reef degradation]. Science, 302 (5650). pp. 1503-1504.

Harding, Jeffery A., Almany, Glenn, Houck, Lynne D., and Hixon, Mark A. (2003) Experimental analysis of monogamy in the Caribbean cleaner goby, Gobiosoma evelynae. Animal Behaviour, 65 (5). pp. 865-874.

Hughes, Terry (2003) Biogeographic comparisons of coral faunas. Oceanus, 29 (3-4). pp. 291-301.

Heupel, M.R., Simpfendorfer, C.A., and Hueter, R.E. (2003) Running before the storm: blacktip sharks respond to falling barometric pressure associated with Tropical Storm Gabrielle. Journal of Fish Biology, 63 (5). pp. 1357-1363.

Hoegh-Guldberg, Ove, Jones, Ross J, Ward, Selina, and Loh, William K (2002) Is coral bleaching really adaptive? Nature, 415 (6872). pp. 601-602.

Hughes, Terry P., Bellwood, David R., and Connolly, Sean R. (2002) Biodiversity hotspots, centres of endemicity, and the conservation of coral reefs. Ecology Letters, 5 (6). pp. 775-784.

Haine, Olivia S., Ridd, Peter V., and Rowe, Richard J. (2001) Range of electrosensory detection of prey by Carcharhinus melanopterus and Himantura granulata. Marine and Freshwater Research, 52 (3). pp. 291-296.

Horne, Michelle L. (2001) A new seahorse species (Syngnathidae: Hippocampus) from the Great Barrier Reef. Records of the Australian Museum, 53 (2). pp. 243-246.

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Munday, Philip L., Crawley, Natalie, and Nilsson, Göran E. (2009) Interacting effects of elevated temperature and ocean acidification on the aerobic performance of coral reef fishes. Marine Ecology Progress Series, 388. pp. 235-242.

Mieog, Jos C., Olsen, Jeanine L., Berkelmans, Ray, Bleuler-Martinez, Silvia A., Willis, Bette L., and van Oppen, Madeleine J.H. (2009) The roles and interactions of symbiont, host and environment in defining coral fitness. PLoS ONE, 4 (7). p. 6364.

Munday, P.L., Leis, J.M., Lough, J.M., Paris, C.B., Kingsford, M.J., Berumen, M.L., and Lambrechts, J. (2009) Climate change and coral reef connectivity. Coral Reefs, 28 (2). pp. 379-395.

McClanahan, T.R., Cinner, J.E., Graham, N.A.J., Daw, T.M., Maina, J., Stead, S.M., Wamukota, A., Brown, K., Venus, V., and Polunin, N.V.C. (2009) Identifying reefs of hope and hopeful actions: contextualizing environmental, ecological, and social parameters to respond effectively to climate change. Conservation Biology, 23 (3). pp. 662-671.

McCook, L.J., Almany, G.R., Berumen, M.L., Day, J.C., Green, A.L., Jones, G.P., Leis, J.M., Planes, S., Russ, G.R., Sale, P.F., and Thorrold, S.R. (2009) Management under uncertainty: guide-lines for incorporating connectivity into the protection of coral reefs. Coral Reefs, 28 (2). pp. 353-366.

Maes, G.E., van Vo, B., Crivelli, A.J., and Volckaert, F.A.M. (2009) Morphological and genetic seasonal dynamics of European eel Anguilla anguilla recruitment in southern France. Journal of Fish Biology, 74 (9). pp. 2047-2068.

Meyer, Eli, Aglyamova, Galina V., Wang, Shi, Buchanan-Carter, Jade, Abrego, David, Colbourne, John K., Willis, Bette L., and Matz, Mikhail V. (2009) Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx. BMC Genomics, 10 (219). pp. 1-18.

McCormick, Mark I. (2009) Indirect effects of heterospecific interactions on progeny size through maternal stress. Oikos, 118 (5). pp. 744-752.

Magnusson, Marie (2009) Effects of priority herbicides and their breakdown products on tropical, estuarine microalgae of the Great Barrier Reef Lagoon. PhD thesis, James Cook University.

Munday, Philip L., Dixson, Danielle L., Donelson, Jennifer M., Jones, Geoffrey P., Pratchett, Morgan S., Devitsina, Galina V., and Døving, Kjell B. (2009) Ocean acidification impairs olfactory discrimination and homing ability of a marine fish. Proceedings of the National Academy of Sciences of the United States of America, 106 (6). pp. 1848-1852.

MacNeil, M. Aaron, Graham, Nicholas A.J., Polunin, Nicholas V.C., Kulbicki, Michel, Galzin, Rene, Harmelin-Vivien, Mireille, and Rushton, Steven P. (2009) Hierarchical drivers of reef-fish metacommunity structure. Ecology, 90 (1). pp. 252-264.

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Munday, P. L., Ryen, C.A., McCormick, M. I., and Walker, S.P.W. (2009) Growth acceleration, behaviour and otolith check marks associated with sex change in the wrasse Halichoeres miniatus. Coral Reefs, 28 (3). pp. 623-634.

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Munday, Philip L., Jones, Geoffrey P., Pratchett, Morgan S., and Williams, Ashley J. (2008) Climate change and the future for coral reef fishes. Fish and Fisheries, 9 (3). pp. 261-285.

Mapleston, Amos, Welch, David, Begg, Gavin A., McLennan, Mark, Mayer, David, and Brown, Ian (2008) Effect of changes in hook pattern and size on catch rate, hooking location, injury and bleeding for a number of tropical reef fish species. Fisheries Research, 91 (2-3). pp. 203-211.

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McCormick, M. I., and Manassa, R. (2008) Predation risk assessment by olfactory and visual cues in a coral reef fish. Coral Reefs, 27 (1). pp. 105-113.

Munday, P. L., Kingsford, M.J., O'Callaghan, M., and Donelson, J.M. (2008) Elevated temperature restricts growth potential of the coral reef fish Acanthochromis polyacanthus. Coral Reefs, 27 (4). pp. 927-931.

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McCormick, M.I., and Larson, J.K. (2007) Field verification of the use of chemical alarm cues in a coral reef fish. Coral Reefs, 26 (3). pp. 571-576.

McClanahan, T.R., Ateweberhan, M., Sebastian, C. Ruiz, Graham, N. A. J., Wilson, S., Bruggemann, J., and Guillaume, M. (2007) Predictability of coral bleaching from synoptic satellite and in situ temperature observations. Coral Reefs, 26 (3). pp. 695-701.

Mantyka, C.S., and Bellwood, D.R. (2007) Direct evaluation of macroalgal removal by herbivorous coral reef fishes. Coral Reefs, 26 (2). pp. 435-442.

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McClanahan, Tim R., Graham, Nicholas A.J., Calnan, Jacqulyn M., and MacNeil, M. Aaron (2007) Towards pristine biomass: reef fish recovery in coral reef marine protected areas in Kenya. Ecological Applications, 17 (4). pp. 1055-1067.

McClanahan , T.R., Ateweberhan, M., Graham, N. A. J., Wilson, S.K., Sebastian, C. Ruiz, Guillaume, M.M.M., and Bruggemann, J.H. (2007) Western Indian Ocean coral communities: bleaching responses and susceptibility to extinction. Marine Ecology Progress Series, 337. pp. 1-13.

Mangubhai, S., Harris, A., and Graham, N.A.J. (2007) Synchronous daytime spawning of the solitary coral Fungia danai (Fungiidae) in the Chagos Archipelago, central Indian Ocean. Coral Reefs, 26 (1). p. 15.

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Munday, Philip L., White, J. Wilson, and Warner, Robert R. (2006) A social basis for the development of primary males in a sex-changing fish. Proceedings of the Royal Society of London Series B: biological sciences, 273 (1603). pp. 2845-2851.

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Miller, Dean Kevin (2005) Towards sustainable wildlife tourism experiences for certified scuba divers on coral reefs. PhD thesis, James Cook University.

Messmer, Vanessa, Jones, Geoffrey P., van Herwerden, Lynne, and Munday, Philip L. (2005) Genetic and ecological characterisation of colour dimorphism in a coral reef fish. Environmental Biology of Fishes, 74 (2). pp. 175-183.

Moland, Even, Eagle, Janelle V., and Jones, Geoffrey P. (2005) Ecology and evolution of mimicry in coral reef fishes. In: Gibson, R.N., Atkinson, R.J.A., and Gordon, J.D.M., (eds.) Oceanography and Marine Biology: an annual review. Taylor & Francis, Boca Raton, FL, USA, pp. 455-482.

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Messmer, Vanessa, van Herwerden, Lynne, Munday, Philip L., and Jones, Geoffrey P. (2005) Phylogeography of colour polymorphism in the coral reef fish Pseudochromis fuscus, from Papua New Guinea and the Great Barrier Reef. Coral Reefs, 24. pp. 392-402.

Moothien Pillay, Ruby , Willis, Bette, and Terashima, Hiroaki (2005) Trends in the density of zooxanthellae in Acropora millepora (Ehrenberg, 1834) at the Palm Island Group, Great Barrier Reef, Australia. Symbiosis, 38. pp. 209-226.

Mellors, Jane, Waycott, Michelle, and Marsh, Helene (2005) Variation in biogeochemical parameters across intertidal seagrass meadows in the central Great Barrier Reef region. Marine Pollution Bulletin, 51 (1). pp. 335-342.

Munday, Philip L. (2004) Habitat loss, resource specialization, and extinction on coral reefs. Global Change Biology, 10 (10). pp. 1642-1647.

Miller-Sims, Vanessa, Atema, Jelle, Kingsford, Michael J., and Gerlach, Gabrielle (2004) Characterization and isolation of DNA microsatellite primers in the cardinalfish (Apogon doederleini). Molecular Ecology Resources, 4 (3). pp. 336-338.

Munday, Philip L., van Herwerden, Lynne, and Dudgeon, Christine L. (2004) Evidence for sympatric speciation by host shift in the sea. Current Biology, 14 (16). pp. 1498-1504.

Moland, Even, and Jones, Geoffrey P. (2004) Experimental confirmation of aggressive mimicry by a coral reef fish. Oecologia, 140 (4). pp. 676-683.

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Munday, Philip L., Parker, Alyson L., Choat, J. Howard, and Gust, Nick (2004) Sex-specific growth effects in protogynous hermaphrodites. Canadian Journal of Fisheries and Aquatic Sciences, 61 (3). pp. 323-327.

Madin, Joshua Simon (2004) A mechanistic approach to understanding and predicting hydrodynamic disturbance on coral reefs. PhD thesis, James Cook University.

Munday, Philip L., Eyre, Peter J., and Jones, Geoffrey P. (2003) Ecological mechanisms for coexistence of colour polymorphism in a coral-reef fish: an experimental evaluation. Oecologia, 137 (4). pp. 519-526.

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Pisapia, Chiara, Anderson, Kristen, and Pratchett, Morgan S. (2014) Intraspecific variation in physiological condition of reef-building corals associated with differential levels of chronic disturbance. PLoS ONE, 9 (3). pp. 1-8.

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Pratchett, M.S., Graham, N.A.J., and Cole, A.J. (2013) Specialist corallivores dominate butterflyfish assemblages in coral-dominated reef habitats. Journal of Fish Biology, 82 (4). pp. 1177-1191.

Pratchett, M.S., Pisapia, C., and Sheppard, C.R.C. (2013) Background mortality rates for recovering populations of Acropora cytherea in the Chagos Archipelago, central Indian Ocean. Marine Environmental Research, 86. pp. 29-34.

Pratchett, Morgan S., McCowan, Dominique, Maynard, Jeffrey A., and Heron, Scott (2013) Changes in bleaching susceptibility among corals subject to ocean warming and recurrent bleaching in Moorea, French Polynesia. PLoS ONE, 8 (7). pp. 1-10.

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Pratchett, Morgan S., Hoey, Andrew S., Feary, David A., Bauman, Andrew G., Burt, John A., and Riegl, Bernhard M. (2013) Functional composition of Chaetodon butterflyfishes at a peripheral and extreme coral reef location, the Persian Gulf. Marine Pollution Bulletin, 72 (2). pp. 333-341.

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Pratchett, Morgan S., Coker, Darren J., Jones, Geoffrey P., and Munday, Philip L. (2012) Specialization in habitat use by coral reef damselfishes and their susceptibility to habitat loss. Ecology and Evolution, 2 (9). pp. 2168-2180.

Pratchett, Morgan S., Bay, Line K., Coker, Darren J., Cole, Andrew J., and Lawton, Rebecca J. (2012) Effects of coral bleaching on coral habitats and associated fishes. In: Lunney, Daniel, and Hutchings, Pat, (eds.) Wildlife and Climate Change: towards robust conservation strategies for Australian fauna. RZS Forum Series . Royal Zoological Society New South Wales, Sydney, NSW, pp. 59-67.

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Pisapia, Chiara, Cole, Andrew J., and Pratchett, Morgan S. (2012) Changing feeding preferences of butterflyfishes following coral bleaching. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Pratchett, Morgan, Hoey, Andrew, Coker, Darren, and Gardiner, Naomi (2012) Interdependence between reef fishes and scleractinian corals. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

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Pollock, F. Joseph, Morris, Pamela J., Willis, Bette L., and Bourne, David G. (2011) The urgent need for robust coral disease diagnostics. PLoS Pathogens, 7 (10). pp. 1-10.

Palmer, C.V., Bythell, J.C., and Willis, B.L. (2011) A comparative study of phenoloxidase activity in diseased and bleached colonies of the coral Acropora millepora. Developmental and Comparative Immunology, 35 (10). pp. 1098-1101.

Pankhurst, Ned, and Munday, Philip (2011) Effects of climate change on fish reproduction and early life history stages. Marine and Freshwater Research, 62 (9). pp. 1015-1026.

Palmer, Caroline V., Traylor-Knowles, Nikki G., Willis, Bette L., and Bythell, John C. (2011) Corals use similar immune cells and wound-healing processes as those of higher organisms. PLoS ONE, 6 (8). pp. 1-11.

Pratchett, Morgan S., Hoey, Andrew S., Wilson, Shaun K., Messmer, Vanessa, and Graham, Nicholas A.J. (2011) Changes in biodiversity and functioning of reef fish assemblages following coral bleaching and coral loss. Diversity, 3 (3). pp. 424-452.

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Penin, Lucie, Michonneau, François, Carroll, Andrew, and Adjeroud, Mehdi (2011) Effects of predators and grazers exclusion on early post-settlement coral mortality. Hydrobiologia, 663 (1). pp. 259-264.

Pratchett, M.S., Trapon, M., Berumen, M.L., and Chong-Seng, K. (2011) Recent disturbances augment community shifts in coral assemblages in Moorea, French Polynesia. Coral Reefs, 30 (1). pp. 183-193.

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Pratchett, Morgan S., Bay, Line, Gehrke, Peter C., Koehn, John D., Osborne, Kate, Pressey, Robert L., Sweatman, Hugh P.A., and Wachenfeld, David (2011) Contribution of climate change to degradation and loss of critical fish habitats in Australian marine and freshwater environments. Marine and Freshwater Research, 62 (9). pp. 1062-1081.

Palmer, Caroline V., McGinty, Elizabeth S., Cummings, David J., Smith, Stephanie M., Bartels, Erich, and Mydlarz, Laura D. (2011) Patterns of coral ecological immunology: variation in the responses of Caribbean corals to elevated temperature and a pathogen elicitor. Journal of Experimental Biology, 214 (24). pp. 4240-4249.

Pratchett, Morgan S., Munday, Philip L., Graham, Nicholas A.J., Kronen, Mecki, Pinca, Silvia, Friedman, Kim, Brewer, Tom D., Bell, Johann D., Wilson, Shaun K., Cinner, Joshua E., Kinch, Jeff P., Lawton, Rebecca J., Williams, Ashley J., Chapman, Lindsay, Magron, Franck, and Webb, Arthur (2011) Vulnerability of coastal fisheries in the tropical Pacific to climate change. In: Bell, Johann D., Johnson, Johanna E., and Hobday, Alistair J., (eds.) Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. Secretariat of the Pacific Community, New Caledonia, pp. 493-576.

Pratchett, M.S., Graham, N.A.J., Sheppard, C.R.C., and Mayes, B. (2010) Are infestations of Cymo melanodactylus killing Acropora cytherea in the Chagos archipelago? Coral Reefs, 29 (4). p. 941.

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Pratchett, M.S. (2010) Changes in coral assemblages during an outbreak of Acanthaster planci at Lizard Island, northern Great Barrier Reef (1995-1999). Coral Reefs, 29 (3). pp. 717-725.

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Penin, Lucie, Michonneau, François, Baird, Andrew H., Connolly, Sean R., Pratchett, Morgan S., Kayal, Mohsen, and Adjeroud, Mehdi (2010) Early post-settlement mortality and the structure of coral assemblages. Marine Ecology Progress Series, 408. pp. 55-64.

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Pollock, F. Joseph, Wilson, Bryan, Johnson, Wesley R., Morris, Pamela J., Willis, Bette L., and Bourne, David G. (2010) Phylogeny of the coral pathogen Vibrio coralliilyticus. Environmental Microbiology Reports, 2 (1). pp. 172-178.

Pratchett, M.S., Schenk, T.J., Baine, M., Syms, C., and Baird, A.H. (2009) Selective coral mortality associated with outbreaks of Acanthaster planci L. in Bootless Bay, Papua New Guinea. Marine Environmental Research, 67 (4-5). pp. 230-236.

Planes, Serge, Jones, Geoffrey P., and Thorrold, Simon R. (2009) Larval dispersal connects fish populations in a network of marine protected areas. Proceedings of the National Academy of Sciences, 106 (14). pp. 5693-5697.

Palmer, Caroline V., Roth, Melissa S., and Gates, Ruth D. (2009) Red fluorescent protein responsible for pigmentation in Trematode-infected Porites compressa tissues. Biological Bulletin, 216 (1). pp. 68-74.

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Pratchett, M.S., Wilson, S.K., Graham, N.A.J., Munday, P.L., Jones, G.P., and Polunin, N.V.C. (2009) Coral bleaching and consequences for motile reef organisms: past, present and uncertain future effects. In: van Oppen, M.J.H., and Lough, J.M., (eds.) Coral Bleaching: patterns, processes, causes and consequences. Ecological Studies, 205 . Springer, Germany, pp. 139-158.

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Pratchett, M.S., Baird, A.H., McCowan, D.M., Coker, D.J., Cole, A.J., and Wilson, S.K. (2009) Protracted declines in coral cover and fish abundance following climate-induced coral bleaching on the Great Barrier Reef. In: Proceedings of the 11th Coral Reef Symposium, 1042- 1046. From: 11th International Coral Reef Symposium, 7 July - 11 July 2008, Fort Lauderdale, Florida, USA.

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Pratchett, M.S., and Berumen, M.L. (2008) Interspecific variation in distributions and diets of coral reef butterflyfishes (Teleostei: Chaetodontidae). Journal of Fish Biology, 73 (7). pp. 1730-1747.

Phelan, M.J., Gribble, N.A., and Garrett, R.N. (2008) Fishery biology and management of Protonibea diacanthus (Sciaenidae) aggregations in far Northern Cape York Peninsula waters. Continental Shelf Research, 28 (16). pp. 2143-2151.

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Page, C.A., and Willis, B.L. (2008) Epidemiology of skeletal eroding band on the Great Barrier Reef and the role of injury in the initiation of this widespread coral disease. Coral Reefs, 27 (2). pp. 257-272.

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Purkis, S.J., Graham, N.A.J., and Riegl, B.M. (2008) Predictability of reef fish diversity and abundance using remote sensing data in Diego Garcia (Chagos Archipelago). Coral Reefs, 27 (1). pp. 167-178.

Prado, Patricia, Collier, Catherine J., and Lavery, Paul S. (2008) 13C and 15N translocation within and among shoots in two Posidonia species from Western Australia. Marine Ecology Progress Series, 361. pp. 69-82.

Pratchett, Morgan S., Munday, Philip L., Wilson, Shaun K., Graham, Nicholas A.J., Cinner, Joshua E., Bellwood, David R., Jones, Geoffrey P., Polunin, Nicholas V.C., and McClanahan, Tim R. (2008) Effects of climate-induced coral bleaching on coral-reef fishes - ecological and economic consequences. Oceanography and Marine Biology: an annual review, 46. pp. 251-296.

Pratchett, M.S., Berumen, M.L., Marnane, M.J., Eagle, J.V., and Pratchett, D.J. (2008) Habitat associations of juvenile versus adult butterflyfishes. Coral Reefs, 27. pp. 541-551.

Pitt, Kylie A., Kingsford, Michael, Rissik, David, and Koop, Klaus (2007) Jellyfish modify the response of planktonic assemblages to nutrient pulses. Marine Ecology Progress Series, 351. pp. 1-13.

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Penin, Lucie, Adjeroud, Mehdi, Pratchett, Morgan S., and Hughes, Terence P. (2007) Spatial distribution of juvenile and adult corals around Moorea (French Polynesia): implications for population regulation. Bulletin of Marine Science, 80 (2). pp. 379-390.

Pratchett, Morgan S. (2007) Feeding preferences of Acanthaster planci (Echinodermata: Asteroidea) under controlled conditions of food availability. Pacific Science, 61 (1). pp. 113-120.

Pratchett, Morgan S. (2007) Dietary selection by coral-feeding butterflyfishes (Chaetodontidae) on the Great Barrier Reef, Australia. Raffles Bulletin of Zoology: Supplement Series, 14. pp. 171-176.

Pratchett, M.S., Wilson, S.K., and Baird, A.H. (2006) Declines in the abundance of Chaetodon butterflyfishes following extensive coral depletion. Journal of Fish Biology, 69 (5). pp. 1269-1280.

Paul, Nicholas A., de Nys, Rocky, and Steinberg, Peter D. (2006) Seaweed-herbivore interactions at a small scale: direct tests of feeding deterrence by filamentous algae. Marine Ecology Progress Series, 323. pp. 1-9.

Peverall, S.C., McPherson, G.R., Garret, R.N., and Gribble, N.A. (2006) New records of the River Shake Glyphis (Carcharhinidae) reported from Cape York Peninsula, northern Australia. Zootaxa, 1233. pp. 53-68.

Peck, Darren R., and Congdon, Bradley C. (2006) Sex-specific chick provisioning and diving behaviour in the wedge-tailed shearwater Puffinus pacificus. Journal of Avian Biology, 37 (3). pp. 245-251.

Page, Cathie, and Willis, Bette (2006) Distribution, host range and large-scale spatial variability in black band disease prevalence on the Great Barrier Reef, Australia. Diseases of Aquatic Organisms, 69 (1). pp. 41-51.

Pratchett, Morgan S., Pradjakusuma, Oki. A., and Jones, Geoffrey P. (2006) Is there a reproductive basis to solitary living versus pair-formation in coral reef fishes? Coral Reefs, 25 (1). pp. 85-92.

Paul, N.A., de Nys, Rocky, and Steinberg, P.D. (2006) Chemical defence against bacteria in the red alga Asparagopsis armata: linking structure with function. Marine Ecology Progress Series, 306. pp. 87-101.

Plathong, S., Chanmethakul, T., Suwonno, V., Buaphet, P., Baird, A.H., Chen, C.A., and Soontornpitakkool, S. (2006) Daytime gamete release from the reef-building coral, Pavona sp., in the Gulf of Thailand. Coral Reefs, 25 (1). p. 72.

Pollock, Kenneth H., Marsh, Helene D., Lawler, Ivan R., and Alldredge, Matthew W. (2006) Estimating animal abundance in heterogeneous environments: an application to aerial surveys for dugongs. Journal of Wildlife Management, 70 (1). pp. 255-262.

Pecl, Gretta T., and Moltschaniwskyj, Natalie A. (2006) Life history of a short-lived squid (Sepioteuthis australis): resource allocation as a function of size, growth, maturation, and hatching season. ICES Journal of Marine Science, 63 (6). pp. 995-1004.

Peck, Darren R., Erwin, Carol A., and Congdon, Bradley C. (2006) Variation in egg-size in the Wedge-tailed Shearwater (Puffinus pacificus). Emu: austral ornithology, 106 (3). pp. 227-231.

Pratchett, Morgan S. (2005) Dietary overlap among coral-feeding butterflyfishes (Chaetodontidae) at Lizard Island, northern Great Barrier Reef. Marine Biology, 148. pp. 373-382.

Pratchett, Morgan S. (2005) Dynamics of an outbreak population of Acanthaster planci at Lizard Island, northern Great Barrier Reef (1995–1999). Coral Reefs, 24 (3). pp. 453-462.

Patterson, Heather M., and Kingsford, Michael J. (2005) Elemental signatures of Acanthochromis polyacanthus otoliths from the Great Barrier Reef have significant temporal, spatial, and between-brood variation. Coral Reefs, 24 (3). pp. 360-369.

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Parra, Guido J. (2005) Behavioural ecology of Irrawaddy, Orcaella brevirostris (Owen in Gray, 1866), and Indo-Pacific humpback dolphins, Sousa chinensis (Osbeck, 1765), in northeast Queensland, Australia : a comparative study. PhD thesis, James Cook University.

Phelan, Michael John (2005) Indigenous subsistence fishing at Injinoo Aboriginal Community, northern Cape York Peninsula. Masters (Research) thesis, James Cook University.

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Pratchett, M.S., Wilson, S.K., Berumen, M.L., and McCormick, M.I. (2004) Sublethal effects of coral bleaching on an obligate coral feeding butterflyfish. Coral Reefs, 23 (3). pp. 352-356.

Pitt, Kylie A, Koop, Klaus, Rissik, David, and Kingsford, M.J. (2004) The ecology of scyphozoan jellyfish in Lake Illawarra. Wetlands (Australia), 21 (2). pp. 115-123.

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Patterson, Heather M., Kingsford, Michael J., and McCulloch, Malcolm T. (2004) Elemental signatures of Pomacentrus coelestis otoliths at multiple spatial scales on the Great Barrier Reef, Australia. Marine Ecology Progress Series, 270. pp. 229-239.

Pandolfi, John M., Bradbury, Roger H., Sala, Enric, Hughes, Terrence P., Bjorndal, Karen A., Cooke, Richard G., McArdle, Deborah, McClenachan, Loren, Newman, Marah J.H., Paredes, Gustavo, Warner, Robert R., and Jackson, Jeremy B.C. (2003) Response to Causes of coral reef degradation [Aronson et al. (2003) Causes of coral reef degradation]. Science, 302 (5650). pp. 1502-1503.

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Platten, J. R., Tibbetts, I. R., and Sheaves, M. J. (2002) The influence of increased line-fishing mortality on the sex ratio and age of sex reversal of the venus tusk fish. Journal of Fish Biology, 60 (2). pp. 301-318.

Pratchett, M.S., Baird, A.H., and Marquis, C.P. (2002) Comparative palatability among eggs of mass-spawning corals. In: Proceedings of the Ninth International Coral Reef Symposium (1), pp. 391-394. From: World Coral Reefs in the New Millenium: bridging research and management for sustainable development, 23-27 October 2000, Bali, Indonesia.

Pratchett, Morgan S. (2001) Dynamics of outbreak populations of crown-of-thorns starfish (Acanthaster planci L.), and their effects on coral reef ecosystems. PhD thesis, James Cook University.

Pratchett, M.S., Gust, N., Goby, G., and Klanten, S.O. (2001) Consumption of coral propagules represents a significant trophic link between corals and reef fish. Coral Reefs, 20 (1). pp. 13-17.

Pratchett, Morgan S. (2001) Influence of coral symbionts on feeding preferences of crown-of-thorns starfish Acanthaster planci in the western Pacific. Marine Ecology-Progress Series, 214. pp. 111-119.

Parra Vergara, Guido J., and Corkeron, Peter J. (2001) Feasibility of using photo-identification techniques to study the Irrawaddy dolphin, Orcaella brevirostris (Owen in Gray 1866). Aquatic Mammals, 27 (1). pp. 45-49.

Pecl, G. (2001) Flexible reproductive strategies in tropical and temperate Sepioteuthis squids. Marine Biology, 138 (1). pp. 93-101.

Purcell, S.W., and Bellwood, D.R. (2001) Spatial patterns of epilithic algal and detrital resources on a windward coral reef. Coral Reefs, 20 (2). pp. 117-125.

Pratchett, M., Vytopil, E., and Parks, P. (2000) Coral crabs influence the feeding patterns of crown-of-thorns starfish. Coral Reefs, 19 (1). p. 36.

Purcell, Steven W. (2000) Association of epilithic algae with sediment distribution on a windward reef in the Northern Great Barrier Reef, Australia. Bulletin of Marine Science, 66 (1). pp. 199-214.

Pratchett, Morgan (1999) An infectious disease in crown-of-thorns starfish on the Great Barrier Reef. Coral Reefs, 18. p. 272.

Purcell, Steven William (1997) The role of sediments in epilithic algal communities on coral reefs. PhD thesis, James Cook University.

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Rasher, Douglas B., Hoey, Andrew S., and Hay, Mark E. (2013) Consumer diversity interacts with prey defenses to drive ecosystem function. Ecology, 94 (6). pp. 1347-1358.

Rummer, Jodie L., Stecyk, Jonathan A.W., Couturier, Christine, Watson, Sue-Ann, Nilsson, Göran E., and Munday, Philip L. (2013) Elevated CO₂ enhances aerobic scope of a coral reef fish. Conservation Physiology, 1 (1). pp. 1-7.

Renema, Willem, Beaman, Robin J., and Webster, Jody M. (2013) Mixing of relict and modern tests of larger benthic foraminifera on the Great Barrier Reef shelf margin. Marine Micropaleontology, 101. pp. 68-75.

Rivera-Posada, Jairo, Owens, Leigh, Caballes, Ciemon F., and Pratchett, Morgan (2012) The role of protein extracts in the induction of disease in Acanthaster planci. Journal of Experimental Marine Biology and Ecology, 429. pp. 1-6.

Rudi, Edi, Campbell, Stuart J., Hoey, Andrew S., Fadli, Nur, Linkie, Matthew, and Baird, Andrew H. (2012) The Coral Triangle Initiative: What are we missing? A case study from Aceh. Oryx, 46 (4). 482-485.

Rivera Posada, Jairo A. (2012) Pathogenesis of crown-of-thorns starfish (Acanthaster planci L). PhD thesis, James Cook University.

Rawlinson, Kate A., and Stella, Jessica (2012) Discovery of the corallivorous polyclad flatworm, Amakusaplana acroporae, on the Great Barrier Reef, Australia - the first report from the wild. PLoS One, 7 (8). pp. 1-6.

Ruiz-Morenol, Diego, Willis, Bette L., Page, A. Cathie, Weil, Ernesto, Cróquer, Aldo, Vargas-Angel, Bernardo, Jordan-Garza, Adán Guillermo, Jordán-Dahlgren, Eric, Raymundo, Laurie, and Harvell, C. Drew (2012) Global coral disease prevalence associated with sea temperature anomalies and local factors. Diseases of Aquatic Organisms, 100 (3). pp. 249-261.

Rivera-Posada, J.A., Pratchett, M., Cano-Gómez, A., Arango-Gómez, J.D., and Owens, L. (2011) Injection of Acanthaster planci with thiosulfate-citrate-bile-sucrose agar (TCBS). I. Disease induction. Diseases of Aquatic Organisms, 97 (2). pp. 85-94.

Rivera-Posada, J.A., Pratchett, M., Cano-Gómez, A., Arango-Gómez, J.D., and Owens, L. (2011) Refined identification of Vibrio bacterial flora from Acanthasther planci based on biochemical profiling and analysis of housekeeping genes. Diseases of Aquatic Organisms, 96 (2). pp. 113-123.

Russ, Garry R., and Alcala, Angel C. (2011) Enhanced biodiversity beyond marine reserve boundaries: the cup spillith over. Ecological Applications, 21 (1). pp. 241-250.

Rivera Posada, J.A., Pratchett, M., and Owens, L. (2011) Injection of Acanthaster planci with thiosulfate-citrate-bile-sucrose agar (TCBS). II. Histopathological changes. Diseases of Aquatic Organisms, 97 (2). pp. 95-102.

Riemann, Lasse, Alfredsson, Hanna, Hansen, Michael M., Als, Thomas D., Nielsen, Torkel G., Munk, Peter, Aarestrup, Kim, Maes, Gregory E., Sparholt, Henrik, Petersen, Michael I., Bachler, Mirjam, and Castonguay, Martin (2010) Qualitative assessment of the diet of European eel larvae in the Sargasso Sea resolved by DNA barcoding. Biology Letters, 6 (6). pp. 819-822.

Russ, Garry R., and Alcala, Angel C. (2010) Decadal-scale rebuilding of predator biomass in Philippine marine reserves. Oecologia, 163 (4). pp. 1103-1106.

Raina, Jean-Baptiste, Dinsdale, Elizabeth A., Willis, Bette L., and Bourne, David G. (2010) Do the organic sulfur compounds DMSP and DMS drive coral microbial associations? Trends in Microbiology, 18 (3). pp. 101-108.

Rosser, N. L. , and Baird, A.H. (2010) Multi-specific coral spawning in spring and autumn in far north-western Australia. In: Proceedings of the 11th International Coral Reef Symposium, pp. 366-370. From: 11th International Coral Reef Symposium, 7 - 11 July 2008, Fort Lauderdale, FL, USA.

Raina, Jean-Baptiste, Tapiolas, Dianne, Willis, Bette L., and Bourne, David G. (2009) Coral-associated bacteria and their role in the biogeochemical cycling of sulfur. Applied and Environmental Microbiology, 75 (11). pp. 3492-3501.

Raeymaekers, Joost A.M., Maes, Gregory E., Geldof, Sarah, Hontis, Ingrid, Nackaerts, Kris, and Volckaert, Filip A.M. (2008) Modeling genetic connectivity in sticklebacks as a guideline for river restoration. Evolutionary Applications, 1 (3). pp. 475-488.

Russ, Garry R., Cheal, Alistair J., Dolman, Andrew M., Emslie, Michael J., Evans, Richard D., Miller, Ian, Sweatman, Hugh, and Williamson, David H. (2008) Rapid increase in fish numbers follows creation of world's largest marine reserve network. Current Biology, 18 (12). pp. 514-515.

Roy, Alexandra-Sophie (2008) Trans-generational marking of clownfish larvae via maternal transmission of stable isotopes. Masters (Research) thesis, James Cook University.

Richards, Zoe T., van Oppen, Madeleine J.H., Wallace, Carden C., Willis, Bette L., and Miller, David J. (2008) Some rare Indo-Pacific coral species are probable hybrids. Public Library of Science ONE , 3 (9). pp. 1-8.

Raymundo, L., Work, T., Bruckner, A., and Willis, B. (2008) A decision tree for describing coral lesions in the field. In: Raymundo, Laurie J., Couch, Courtney S., and Harvell, C. Drew, (eds.) Coral Disease Handbook: guidelines for assessment monitoring and management. Coral Reef Targeted Research and Capacity Building for Management Program, pp. 17-32.

Ryen, Christopher (2007) Sex-specific growth dynamics in protogynous hermaphrodites. Masters (Research) thesis, James Cook University.

Robbins, William D., Hisano, Mizue, Connolly, Sean R., and Choat, J. Howard (2006) Ongoing collapse of coral-reef shark populations. Current Biology, 16 (23). pp. 2314-2319.

Roberts, David A., Poore, Alistair G.B., and Johnston, Emma L. (2006) Ecological consequences of copper contamination in macroalgae: effects on epifauna and associated herbivores. Environmental Toxicology and Chemistry, 25 (9). pp. 2470-2479.

Roberts, David, and Poore, Alistair (2006) Habitat configuration affects colonisation of epifauna in a marine algal bed. Biological Conservation, 127 (1). pp. 18-26.

Russ, Garry R., Stockwell, Brian, and Alcala, Angel C. (2005) Inferring versus measuring rates of recovery in no-take marine reserves. Marine Ecology Progress Series, 292. pp. 1-12.

Rotmann, Sandra (2004) Tissue thickness as a tool to monitor the stress response of massive porites corals to turbidity impact on Lihir Island, Papua New Guinea. PhD thesis, James Cook University.

Rodriguez-Lanetty, Mauricio, Krupp, Dave A., and Weis, Virginia M. (2004) Distinct ITS types of Symbiodinium in Clade C correlate with cnidarian/dinoflagellate specificity during onset of symbiosis. Marine Ecology Progress Series, 275. pp. 97-102.

Russ, Garry R., Alcala, Angel C., Maypa, Aileen P., Calumpong, Hilconida P., and White, Alan T. (2004) Marine reserve benefits local fisheries. Ecological Applications, 14 (2). pp. 597-606.

Russ, Garry R., and Alcala, Angel C. (2004) Marine reserves: long-term protection is required for full recovery of predatory fish populations. Oecologia, 138 (4). pp. 622-627.

Rodriguez-Lanetty, Mauricio, Marquez, Luis Miguel, and Losada, Freddy (2003) Changes in gorgonian morphology along a depth gradient at Isla Alcatraz, San Sebastian National Park, Venezuela. Bulletin of Marine Science, 72 (3). pp. 1019-1023.

Rogers, Cary N., de Nys, Rocky, and Steinberg, Peter D. (2003) Ecology of the sea hare Aplysia parvula (Opisthobranchia) in New South Wales, Australia. Molluscan Research, 23 (3). pp. 185-198.

Round, Frank E., and Alexander, Christopher G. (2002) Licmosoma: a new diatom genus growing on barnacle cirri. Diatom Research, 17 (2). pp. 319-326.

Reid, David Gordon (1984) The systematics and ecology of the mangrove-dwelling Littoraria species (Gastropoda: Littorinidae) in the Indo-Pacific. PhD thesis, James Cook University.

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Sheaves, Marcus, Abrantes, Kátya G., and Johnston, Ross (2014) Deluge Inlet, a pristine small tropical estuary in north-eastern Australia. In: Wolanski, Eric, (ed.) Estuaries of Australia in 2050 and Beyond. Estuaries of the World . Springer, Dordrecht, The Netherlands, pp. 261-275.

Sheaves, Marcus, Sheaves, Janine, Stegemann, Krista, and Molony, Brett (2014) Resource partitioning and habitat-specific dietary plasticity of two estuarine sparid fishes increase food web complexity. Marine and Freshwater Research, 65 (2). pp. 114-123.

Sato, Yui, Willis, Bette L., and Bourne, David G. (2013) Pyrosequencing-based profiling of archaeal and bacterial 16S rRNA genes identifies a novel archaeon associated with black band disease in corals. Environmental Microbiology, 15 (11). pp. 2994-3007.

Shaw, Emily C., Munday, Philip L., and McNeil, Ben I. (2013) The role of CO₂ variability and exposure time for biological impacts of ocean acidification. Geophysical Research Letters, 40 (17). pp. 4685-4688.

Stieglitz, Thomas (2013) Habitat engineering by decadal-scale bioturbation around shipwrecks on the Great Barrier Reef mid-shelf. Marine Ecology Progress Series, 477. pp. 29-40.

Sheaves, Marcus (2013) Mangrove fish assemblages and ecological equivalence: reply to Castellanos-Galindo & Krumme (2013). Marine Ecology Progress Series, 474. pp. 303-304.

Sheaves, Marcus, Johnston, Ross, Johnson, Ashlee, Baker, Ronald, and Connolly, Rod M. (2013) Nursery function drives temporal patterns in fish assemblage structure in four tropical estuaries. Estuaries and Coasts, 36 (5). pp. 893-905.

Schmidt-Roach, Sebastian, Miller, Karen J., Woolsey, Erika, Gerlach, Gabriele, and Baird, Andrew H. (2012) Broadcast spawning by Pocillopora species on the Great Barrier Reef. PLoS ONE, 7 (12). e50847.

Sun, D., Blomberg, S.P., Cribb, T.H., McCormick, M.I., and Grutter, A.S. (2012) The effects of parasites on the early life stages of a damselfish. Coral Reefs, 31 (4). pp. 1065-1075.

Smith , Timoth M., Jenkins, Gregory P., and Hutchinson, Neil (2012) Seagrass edge effects on fish assemblages in deep and shallow habitats. Estuarine, Coastal and Shelf Science , 115. pp. 291-299.

Sprenger, Dennis, Dingemanse, Niels J., Dochtermann, Ned A., Theobald, Jennifer, and Walker, Stefan P.W. (2012) Aggressive females become aggressive males in a sex-changing reef fish. Ecology Letters, 15 (9). pp. 986-992.

Sheaves, Marcus (2012) Ecosystem equivalence and the ability to generalise: insights from global consistencies in mangrove fish assemblages. Marine Ecology Progress Series, 461. pp. 137-149.

Simpfendorfer, Colin A., and Heupel, Michelle R. (2012) Assessing habitat use and movement. In: Carrier, Jeffrey C., Musick, John A., and Heithaus, Michael R., (eds.) Biology of Sharks and Their Relatives. CRC Marine Biology Series . CRC Press, London, UK, pp. 579-601.

Sheppard, C.R.C., Ateweberhan, M., Bowen, B.W., Carr, P., Chen, C.A., Clubbe, C., Craig, M.T., Ebinghaus, R., Eble, J., Fitzsimmons, N., Gaither, M.R., Gan, C-H., Gollock, M., Guzman, N., Graham, N.A.J., Harris, A., Jones, R., Keshavmurthy, S., Koldewey, H., Lundin, C.G., Mortimer, J.A., Obura, D., Pfeiffer, M., Price, A.R.G., Purkis, S., Raines, P., Readman, J.W., Riegl, B., Rogers, A., Schleyer, M., Seaward, M.R.D., Sheppard, A.L.S., Tamelander, J., Turner, J.R., Visram, S., Vogler, C., Vogt, S., Wolschke, H., Yang, J. M-C., Yang, S-Y., and Yesson, C. (2012) Reefs and islands of the Chagos Archipelago, Indian Ocean: why it is the world's largest no-take marine protected area. Aquatic Conservation: marine and freshwater ecosystems , 22 (2). pp. 232-261.

Saggiomo, Silvia L.A., and Seymour, Jamie E. (2012) Cardiotoxic effects of venom fractions from the Australian box jellyfish Chironex fleckeri on human myocardiocytes. Toxicon, 60 (3). pp. 391-395.

Stella, Jessica (2012) Evidence of corallivory by the keyhole limpet Diodora galeata. Coral Reefs, 31 (2). p. 579.

Sheaves, Marcus, Johnston, Ross, and Connolly, Rod M. (2012) Fish assemblages as indicators of estuary ecosystem health. Wetlands Ecology and Management, 20 (6). pp. 477-490.

Sheaves, Marcus, Johnston, Ross, Connolly, Rod M., and Baker, Ronald (2012) Importance of estuarine mangroves to juvenile banana prawns. Estuarine, Coastal and Shelf Science , 114. pp. 208-219.

Saenz-Agudelo, Pablo, Jones, Geoffrey P., Thorrold, Simon R., and Planes, Serge (2012) Patterns and persistence of larval retention and connectivity in a marine fish metapopulation. Molecular Ecology, 21 (19). pp. 4695-4705.

Simpfendorfer, Colin A., Olsen, Esben M., Heupel, Michelle, and Moland, Even (2012) Three-dimensional kernel utilization distributions improve estimates of space use in aquatic animals. Canadian Journal of Fisheries and Aquatic Sciences, 69 (3). pp. 565-572.

Stieglitz, Thomas C. (2012) The Yongala's "Halo of Holes" - systematic bioturbation close to a shipwreck. In: Harris, Peter T., and Baker, Elaine K., (eds.) Seafloor Geomorphology as Benthic Habitat: GeoHAB atlas of seafloor geomorphic features and benthic habitats. Elsevier, London, pp. 277-287.

Saunders, Richard J., Fowler, Anthony J., and Gillanders, Bronwyn M. (2012) The use of food resources by 0+ snapper, Chrysophrys auratus, from northern Spencer Gulf, South Australia. Marine and Freshwater Research, 63 (8). pp. 680-686.

Simpson, Stephen D, Munday, Philip, Wittenrich, Matthew, Manassa, Rachel, Dixson, Danielle, Gagliano, Monica, and Yan, Hong Y (2011) Ocean acidification erodes crucial auditory behaviour in a marine fish. Biology Letters, 7 (6). pp. 917-920.

Saenz-Agudelo, Pablo, Jones, Geoffrey P., Thorrold, Simon R., and Planes, Serge (2011) Connectivity dominates larval replenishment in a coastal reef fish metapopulation. Proceedings of the Royal Society of London Series B, Biological Sciences, 278 (1720). pp. 2954-2961.

Stella, J.S., Munday, P.L., and Jones, G.P. (2011) Effects of coral bleaching on the obligate coral-dwelling crab Trapezia cymodoce. Coral Reefs, 30 (3). pp. 719-727.

Sato, Y., Bourne, D.G., and Willis, B.L. (2011) Effects of temperature and light on the progression of black band disease on the reef coral, Montipora hispida. Coral Reefs, 30 (3). pp. 753-761.

Stella, Jessica S., Pratchett, Morgan S., Hutchings, Pat A., and Jones, Geoffrey P. (2011) Coral-associated invertebrates: diversity, ecology importance and vulnerability to disturbance. Oceanography and Marine Biology: an annual review, 49. pp. 43-104.

Saenz-Agudelo, Pablo (2011) Estimating connectivity in coral reef fish populations: a tool for understanding stability and resilience of marine ecosystems. PhD thesis, James Cook University.

Souter, P., Bay, L.K., Andreakis, N., Császár, N., Seneca, F.O., and van Oppen, M.J.H. (2011) A multilocus, temperature stress-related gene expression profile assay in Acropora millepora, a dominant reef-building coral. Molecular Ecology Resources, 11 (2). pp. 328-334.

Simpfendorfer, Colin A., Yeiser, Beau G., Wiley, Tonya R., Poulakis, Gregg R., Stevens, Philip W., and Heupel, Michelle R. (2011) Environmental influences on the spatial ecology of juvenile smalltooth sawfish (Pristis pectinata): results from acoustic monitoring. PLoS One, 6 (2). pp. 1-12.

Saenz-Agudelo, P., Jones, G.P., Thorrold, S.R., and Planes, S. (2011) Detrimental effects of host anemone bleaching on anemonefish populations. Coral Reefs, 30 (2). pp. 497-506.

Scaps, P, and Haapkyla, J (2011) Focal white spots on Porites spp. from the north Andaman Sea, Western Thailand and the Wakatobi Marine National Park, Indonesia. Galaxea, Journal of Coral Reef Studies, 13. pp. 3-4.

Sale, Peter F., Feary, David, Burt, John A., Bauman, Andrew G., Cavalcante, Geórgenes H., Drouillard, Kenneth G., Kjerfve, Björn, Marquis, Elise, Trick, Charles G., Usseglio, Paolo, and Van Lavieren, Hanneke (2011) The growing need for sustainable ecological management of marine communities of the Persian Gulf. Ambio, 40 (1). pp. 4-17.

Sheppard, James K., Marsh, Helene, Jones, Rhondda E., and Lawler, Ivan R. (2010) Dugong habitat use in relation to seagrass nutrients, tides, and diel cycles. Marine Mammal Science, 26 (4). pp. 855-879.

Sheaves, Marcus, Johnston, Ross, and Connolly, Rod M. (2010) Temporal dynamics of fish assemblages of natural and artificial tropical estuaries. Marine Ecology Progress Series, 410. pp. 143-157.

Sabetian, Armagan (2010) Parrotfish fisheries and population dynamics: a case-study from Solomon Islands. PhD thesis, James Cook University.

Sheaves, Marcus, and Johnston, Ross (2010) Implications of spatial variability of fish assemblages for monitoring of Australia’s tropical estuaries. Aquatic Conservation: marine and freshwater ecosystems , 20 (3). pp. 348-356.

Sato, Yui, Willis, Bette L., and Bourne, David G. (2010) Successional changes in bacterial communities during the development of black band disease on the reef coral, Montipora hispida. ISME Journal, 4 (2). pp. 203-214.

Souter, P., Willis, B.L., Bay, L.K., Caley, M.J., Muirhead, A., and van Oppen, M.J.H. (2010) Location and disturbance affect population genetic structure in four coral species of the genus Acropora on the Great Barrier Reef. Marine Ecology Progress Series, 416. pp. 35-45.

Sale, P.F., Van Lavieren, H., Ablan Lagman, M.C., Atema, J., Butler, M., Fauvelot, C., Hogan, J.D., Jones, G.P., Lindeman, K.C., Paris, C.B., Steneck, R., and Stewart, H.L. (2010) Preserving Reef Connectivity: a Handbook for Marine Protected Area Managers. Report. Coral Reef Targeted Research &Capacity Building for Management Project (CRTR).

Stella, J.S., Jones, G.P., and Pratchett, M.S. (2010) Variation in the structure of epifaunal invertebrate assemblages among coral hosts. Coral Reefs, 29 (4). pp. 957-973.

Sato, Yui, Bourne, David G., and Willis, Bette L. (2009) Dynamics of seasonal outbreaks of black band disease in an assemblage of Montipora species at Pelorus Island (Great Barrier Reef, Australia). Proceedings of the Royal Society of London Series B, 276. pp. 2795-2803.

Sheaves, Marcus, and Johnston, Ross (2009) Ecological drivers of spatial variability among fish fauna of 21 tropical Australian estuaries. Marine Ecology Progress Series, 385. pp. 245-260.

Steneck, R.S., Paris, C.B., Arnold, S.N., Ablan-Lagman, M.C., Alcala, A.C., Butler, M.J., McCook, L.J., Russ, G.R., and Sale, P.F. (2009) Thinking and managing outside the box: coalescing connectivity networks to build region-wide resilience in coral reef ecosystems. Coral Reefs, 28 (2). pp. 367-378.

Saenz-Agudelo, P., Jones, G.P., Thorrold, S.R., and Planes, S. (2009) Estimating connectivity in marine populations: an empirical evaluation of assignment tests and parentage analysis under different gene flow scenarios. Molecular Ecology, 18 (8). pp. 1765-1776.

Sussman, Meir, Mieog, Jos C., Doyle, Jason R., Victor, Steven, Willis, Bette L., and Bourne, David G. (2009) Vibrio Zinc-Metalloprotease causes photoinactivation of coral endosymbionts and coral tissue lesions. PLoS ONE, 4 (2). p. 4511.

Sheppard, James K., Jones, Rhondda E., Marsh, Helene, and Lawler, Ivan R . (2009) Effects of tidal and diel cycles on dugong habitat use. Journal of Wildlife Management, 73 (1). pp. 45-59.

Sheaves, Marcus (2009) Consequences of ecological connectivity: the coastal ecosystem mosaic. Marine Ecology Progress Series, 391. pp. 107-115.

Simpfendorfer, Colin A., and Kyne, Peter M. (2009) Limited potential to recover from overfishing raises concerns for deep-sea sharks, rays and chimaeras. Environmental Conservation, 36. pp. 97-103.

Sheaves, Marcus, Duc, Nguyen Huu , and Khoa, Nguyen Xuan (2008) Ecological attributes of a tropical river basin vulnerable to the impacts of clustered hydropower developments. Marine and Freshwater Research, 59 (11). pp. 971-986.

Steneck, Robert H., Bustamante, Rodrigo H., Dayton, Paul K., Jones, Geoffrey P., and Hobday, Alistair J. (2008) Current status and future trends in kelp forest ecosystems. In: Polunin, Nicholas V.C., (ed.) Aquatic Ecosystems: trends and global prospects. Cambridge University Press, Cambridge, UK, pp. 226-241.

Sofonia, Jeremy J., and Anthony, Kenneth R.N. (2008) High-sediment tolerance in the reef coral Turbinaria mesenterina from the inner Great Barrier Reef lagoon (Australia). Estuarine, Coastal and Shelf Science , 78 (4). pp. 748-752.

Sussman, Meir, Willis, Bette L., Victor, Steven, and Bourne, David G. (2008) Coral pathogens identified for white syndrome (WS) epizootics in the Indo-Pacific. Public Library of Science ONE , 3 (6). pp. 1-14.

Sheaves, Marcus, and Johnston, Ross (2008) Influence of marine and freshwater connectivity on the dynamics of subtropical estuarine wetland fish metapopulations. Marine Ecology Progress Series, 357. pp. 225-243.

Simpfendorfer, Colin Ashley, Heupel, Michelle RaNae, and Collins, Angela B. (2008) Variation in the performance of acoustic receivers and its implication for positioning algorithms in a riverine setting. Canadian Journal of Fisheries and Aquatic Sciences, 65 (3). pp. 482-492.

Scheffer, Marten, van Nes, Egbert H., Holmgren, Milena, and Hughes, Terry (2008) Pulse-driven loss of top-down control: the critical-rate hypothesis. Ecosystems, 11 (2). pp. 226-237.

Srinivas, V. , Baird, Andrew, Kerr, Alexander, and Ram, Sunita (2008) Coastal Bio-shields and their Putative Role During Large Weather Related Disturbance Events IN: Bhalla, R.S, Ram, Sunita and Srinivas, V. (eds) Studies on Vulnerability and Habitat Restoration along the Coromandel Coast. Report Section. FERAL, UNDP-UNTRS, Pondicherry, India .

Simpfendorfer, C. A., Poulakis, G. R., O'Donnell, P. M, and Wiley, T. R. (2008) Growth rates of juvenile smalltooth sawfish Pristis pectinata Latham in the western Atlantic. Journal of Fish Biology, 72 (3). pp. 711-723.

Sheppard, James K. (2008) The spatial ecology of dugongs: applications to conservation management. PhD thesis, James Cook University.

Short, F., Carruthers, T., Dennison, W., and Waycott, M. (2007) Global seagrass distribution and diversity: a bioregional model. Journal of Experimental Marine Biology and Ecology, 350 (1-2). pp. 3-20.

Sheaves, Marcus, Johnston, Ross, and Abrantes, Kátya (2007) Fish fauna of dry tropical and subtropical estuarine floodplain wetlands. Marine and Freshwater Research, 58 (10). pp. 931-943.

Sheaves, Marcus, Abrantes, Katya, and Johnston, Ross (2007) Nursery ground value of an endangered wetland to juvenile shrimps. Wetlands Ecology and Management, 15 (4). pp. 311-327.

Sampey, A., McKinnon, A.D., Meekan, M.G., and McCormick, M.I. (2007) Glimpse into guts: overview of the feeding of larvae of tropical shorefishes. Marine Ecology Progress Series, 339. pp. 243-257.

Sheaves, Marcus, Connolly, Rod, and Johnston, Ross (2007) Assessment of Techniques for Determining the Health of Tropical Estuarine Ecosystems. Report. Marine and Tropical Sciences Research Facility, Cairns. (Unpublished)

Sheaves, Marcus, Johnston, Ross, Molony, Brett, and Shephard, Greg (2007) The effect of impoundments on the structure and function of fish fauna in a highly regulated dry tropics estuary. Estuaries and Coasts, 30 (3). pp. 507-517.

Sheppard, James K., Lawler, Ivan R ., and Marsh, Helene (2007) Seagrass as pasture for seacows: landscape-level dugong habitat evaluation. Estuarine, Coastal and Shelf Science , 71 (1-2). pp. 117-132.

Sheaves, Marcus, Brodie, Jon, Brooke, Brendan, Dale, Pat, Lovelock, Catherine, Waycott, Michelle, Gehrke, Peter, Johnston, Ross, and Baker, Ronald (2007) Vulnerability of coastal and estuarine habitats in the GBR to climate change. In: Johnson, Johanna E., and Marshall, Paul A., (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority and the Australian Greenhouse Office, Townsville, QLD, Australia, pp. 593-620.

Smith-Keune, C., Jerry, D.R., Evans, B.S., McCormick, M.I., Munday, P.L., and Jones, G.P. (2006) Development and characterization of eight new microsatellite markers for the haremic sandperch, Parapercis cylindrica (family Pinguipedidae). Molecular Ecology Resources, 6 (4). pp. 1036-1038.

Srinivasan, M., and Jones, G.P. (2006) Extended breeding and recruitment periods of fishes on a low latitude coral reef. Coral Reefs, 25 (4). pp. 673-682.

Sheaves, Marcus (2006) Is the timing of spawning in sparid fishes a response to sea temperature regimes? Coral Reefs, 25 (4). pp. 655-669.

Srinivasan, Maya (2006) Recruitment in time and space: the dynamics and distributions of reef fish populations on a low latitude coral reef. PhD thesis, James Cook University.

Scardino, Andrew J. (2006) Biomimetic fouling control. PhD thesis, James Cook University.

Sheaves, Marcus, Baker, Ronnie, and Johnston, Ross (2006) Marine nurseries and effective juvenile habitats: an alternative view. Marine Ecology Progress Series , 318. pp. 303-306.

Sheaves, Marcus, Collins, John, Houston, Wayne, Dale, Pat, Revill, Andrew, Johnston, Ross, and Abrantes, Katya (2006) Contribution of floodplain wetland pools to the ecological functioning of the Fitzroy River Estuary. Report. Cooperative Research Centre for Coastal Zone, Estuary and Waterway Management, Brisbane, QLD, Australia.

Salih, Anya, Cox, Guy, Szymczak, Ron, Coles, Steve, Baird, Andrew, Dunstan, Andy, Cocco, Giordana, Mills, Jacqui, and Larkum, Anthony (2006) The role of host-based color and fluorescent pigments in photoprotection and in reducing bleaching stress in corals. In: Proceedings of 10th International Coral Reef Symposium, pp. 746-756. From: 10th International Coral Reef Symposium, 28 June - 2 July, 2004, Okinawa, Japan.

Sheaves, Marcus (2006) Scale-dependent variation in composition of fish fauna among sandy tropical estuarine embayments. Marine Ecology Progress Series, 310. pp. 173-184.

Sampey, Alison (2006) Distributions and diets of the larvae of tropical shorefishes near the northwest cape of Australia. Masters (Research) thesis, James Cook University.

Smyth, Danielle J., Glanfield, Amber, McManus, Donald P., Hacker, Elke, Blair, David, Anderson, Greg J., and Jones, Malcolm K. (2006) Two Isoforms of a Divalent Metal Transporter (DMT1) in Schistosoma mansoni Suggest a Surface-associated Pathway for Iron Absorption in Schistosomes. Journal of Biological Chemistry, 281 (4). pp. 2242-2248.

Selig, Elizabeth R., Harvell, C. Drew, Bruno, John F., Willis, Bette L., Page, Cathie A., Casey, Kenneth S., and Sweatman, Hugh (2006) Analyzing the relationship between ocean temperature anomalies and coral disease outbreaks at broad spatial scales. In: Phinney, Jonathan T., Hoegh-Guldberg, Ove, Kleypas, Joanie, Skirving, William, and Strong, A.l., (eds.) Coral Reefs and Climate Change: Science and Management. Coastal and Estuarine Studies 61 . American Geophysical Union, Washington, DC, pp. 111-128.

Sofonia, Jeremy (2006) Sediment responses of corals from inshore reefs, Great Barrier Reef, Australia. Masters (Research) thesis, James Cook University.

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