Publications by: Tropical Water & Ecosystems
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Archer, R., Talbot, L., Marshall, C., Hunter, C., Muir, B., Forester, T., Wren, L, Bedford, K., Johnson, M., Singleton, G., Singleton, B., Smith, T., Chartrand, K., Wright, J., and Hedge, P. (2023) AMSA Conference Indigenous Workshop Summary. Report. National Environmental Science Program, Cairns, QLD, Australia.
Albright, Rebecca, Hansson, Lina, Cooley, Sarah, Gattuso, Jean-Pierre, Marshall, Paul, Marshall, Nadine, Fletcher, Stephen, Haraldsson, Gunnar, and Hoegh-Guldberg, Ove (2023) Are we ready for ocean acidification? A framework for assessing and advancing policy readiness. Environmental Research Letters, 18. 041001.
Ani, Chinenye J., Smithers, Scott G., Lewis, Stephen, Baird, Mark, and Robson, Barbara (2023) eReefs modelling suggests Trichodesmium may be a major nitrogen source in the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 285. 108306.
Alderdice, Rachel, Pernice, Mathieu, Cardenas, Anny, Hughes, David J., Harrison, Peter L., Boulotte, Nadine, Chartrand, Katie, Kuehl, Michael, Suggett, David J., and Voolstra, Christian R. (2022) Hypoxia as a physiological cue and pathological stress for coral larvae. Molecular Ecology, 31 (2). pp. 571-587.
Armitage, Chris, Auld, Tony, Bradbury, Keith, Campbell, Heather, Clarkson, Bruce, Cox, Andrew, Dixon, Peter, Fitzsimons, James, Foran, Brendan, Howling, Gary, McLeod, Ian, Norrish, Shane, O'Connor, Patrick, O'Gorman, Dermot, Slater, Helen, and Wrigley, Damian (2021) The Darwin Agreement: a collaboration between Australian restoration organisations in support of the UN Decade on Ecosystem Restoration. Ecological Management and Restoration, 22 (3). pp. 220-222.
Adame, Maria, Waltham, Nathan, Iram, Naima, Farahani, Bahareh Shahrabi, Salinas, Cristian, Buford, Michelle, and Ronan, Mike (2021) Denitrification within the sediments and epiphyton of tropical macrophyte stands. Inland Waters, 11. 3. pp. 257-266.
Abhik, Santra, Hope, Pandora, Hendon, Harry H., Hutley, Lindsay B., Johnson, Stephanie, Drosdowsky, Wasyl, Brown, Josephine R, and Duke, Norman C. (2021) Influence of the 2015–2016 El Niño on the record‑breaking mangrove dieback along northern Australia coast. Scientific Reports, 11. 20411.
Abbott, Brett N., Wallace, Jim, Nicholas, David M., Karim, Fazlul, and Waltham, Nathan J. (2020) Bund removal to re-establish tidal flow, remove aquatic weeds and restore coastal wetland services—North Queensland, Australia. PLoS ONE, 15 (1). e0217531.
Arthington, Angela H., Pearson, Richard G., Godfrey, Paul C., Karim, Fazlul, and Wallace, Jim (2020) Integrating freshwater wetland science into planning for Great Barrier Reef sustainability. Aquatic Conservation: Marine and Freshwater Ecosystems, 30 (9). pp. 1727-1733.
Anthony, Kenneth R. N., Helmstedt, Kate J., Bay, Line K., Fidelman, Pedro, Hussey, Karen E., Lundgren, Petra, Mead, David, McLeod, Ian M., Mumby, Peter J., Newlands, Maxine, Schaffelke, Britta, Wilson, Kerrie A., and Hardisty, Paul E. (2020) Interventions to help coral reefs under global change – a complex decision challenge. PLoS ONE, 15 (8). e0236399.
Allard, Sarah M., Costa, Matthew T., Bulseco, Ashley N., Helfer, Véronique, Wilkins, Laetitia G.E., Hassenrück, Christiane, Zengler, Karsten, Zimmer, Martin, Erazo, Natalia, Mazza Rodrigues, Jorge L., Duke, Norman, Melo, Vânia M.M., Vanwonterghem, Inka, Junca, Howard, Makonde, Huxley M., Jiménez, Diego Javier, Tavares, Tallita C.L., Fusi, Marco, Daffonchio, Daniele, Duarte, Carlos M., Peixoto, Raquel S., Rosado, Alexandre S., Gilbert, Jack A., and Bowman, Jeff (2020) Introducing the mangrove microbiome initiative: identifying microbial research priorities and approaches to better understand, protect, and rehabilitate mangrove ecosystems. mSystems, 5 (5). e0065820.
Ayling, T., Ayling, A., Chartrand, K.M., and Rasheed, M.A. (2020) Port of Abbot Point Ambient Coral Monitoring Surveys: 2018-2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Ayling, T., Ayling, A., Chartrand, K.M., and Rasheed, M.A. (2020) Ports of Mackay and Hay Point Ambient Coral Monitoring Surveys: 2018-2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Adams, Matthew P., Koh, Edwin J.Y., Vilas, Maria P., Collier, Catherine J., Lambert, Victoria M., Sisson, Scott A., Quiroz, Matias, McDonald-Madden, Eve, McKenzie, Len J., and O'Brien, Katherine R. (2020) Predicting seagrass decline due to cumulative stressors. Environmental Modelling & Software, 130. 104717.
Amir, A. Aldrie, and Duke, Norman C. (2019) Distinct characteristics of canopy gaps in the subtropical mangroves of Moreton Bay, Australia. Estuarine, Coastal and Shelf Science, 222. pp. 66-80.
Andrisoa, Aladin, Lartaud, Franck, Rodellas, Valentí, Neveu, Ingrid, and Stieglitz, Thomas C. (2019) Enhanced growth rates of the Mediterranean mussel in a coastal lagoon driven by groundwater inflow. Frontiers in Marine Science, 6. 753.
Arthington, Angela H., Mackay, Steve J., Ronan, Mike, James, Cassandra S., and Kennard, Mark J. (2019) Freshwater wetlands of Moreton Bay Quandamooka and catchments: Biodiversity, ecology, threats and management. In: Tibbetts, Ian R., Rothlisberg, Peter C., Neil, David C., Homburg, Tamara A., Brewer, David T., and Arthington, Angela H., (eds.) Moreton Bay Quandamooka & Catchment: Past, present, and future. The Moreton Bay Foundation, Brisbane, Queensland, Australia, pp. 319-333.
Adame, Maria Fernanda, Arthington, Angela, Waltham, Nathan, Hasan, Syezlin, Selles, Amelia, and Ronan, Mike (2019) Managing threats and restoring wetlands within catchments of the Great Barrier Reef, Australia. Aquatic Conservation: marine and freshwater ecosystems, 29. pp. 829-839.
Adame, M.F., Franklin, H., Waltham, N.J., Rodriguez, S., Kavehei, E., Turschwell, M.P., Balcombe, S.R., Kaniewski, P., Burford, M.A., and Ronan, M. (2019) Nitrogen removal by tropical floodplain wetlands through denitrification. Marine and Freshwater Research, 70. pp. 1513-1521.
Ayling, T., Ayling, A., Chartrand, K.M., and Rasheed, M.A. (2019) Ports of Mackay and Hay Point Ambient Coral Monitoring Surveys: 2017-2018. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Andrisoa, Aladin, Stieglitz, Thomas C., Rodellas, Valenti, and Raimbault, Patrick (2019) Primary production in coastal lagoons supported by groundwater discharge and porewater fluxes inferred from nitrogen and carbon isotope signatures. Marine Chemistry, 210. pp. 48-60.
Adams, Matthew P., Collier, Catherine J., Uthicke, Sven, Ow, Yan X., Langlois, Lucas, and O'brien, Katherine R. (2017) Model fit versus biological relevance: evaluating photosynthesis-temperature models for three tropical seagrass species. Scientific Reports, 7. 39930. pp. 1-12.
Albert, Simon, Saunders, Megan I., Roelfsema, Chris M., Leon, Javier X., Johnstone, Elizabeth, Mackenzie, Jock R., Hoegh-Guldberg, Ove, Grinham, Alistair R., Phinn, Stuart R., Duke, Norman C, Mumby, Peter J., Kovacs, Eva, and Woodroffe, Colin D. (2017) Winners and losers as mangrove, coral and seagrass ecosystems respond to sea-level rise in Solomon Islands. Environmental Research Letters, 12 (9). 094009. pp. 1-11.
Aschenbroich, Adélaïde, Michaud, Emma, Stieglitz, Thomas, Fromard, Francois, Gardel, Antoine, Tavares, Marcos, and Thouzeau, Gérard (2016) Brachyuran crab community structure and associated sediment reworking activities in pioneer and young mangroves of French Guiana, South America. Estuarine, Coastal and Shelf Science, 182 (Part A). pp. 60-71.
Albright, Rebecca, Anthony, Kenneth R.N., Baird, Mark, Beeden, Roger, Byrne, Maria, Collier, Catherine, Dove, Sophie, Fabricius, Katharina, Hoegh-Guldberg, Ove, Kelly, Ryan P., Lough, Janice, Mongin, Mathieu, Munday, Philip L., Pears, Rachel J., Russell, Bayden D., Tilbrook, Bronte, and Abal, Eva (2016) Ocean acidification: linking science to management solutions using the Great Barrier Reef as a case study. Journal of Environmental Management, 182. pp. 641-650.
Abrantes, Kátya G., Johnston, Ross, Connolly, Rod M., and Sheaves, Marcus (2015) Importance of mangrove carbon for aquatic food webs in wet–dry tropical estuaries. Estuaries and Coasts, 38 (1). pp. 383-399.
Arthington, Angela A., Godfrey, Paul C., Pearson, Richard G., Karim, Fazlul, and Wallace, Jim (2015) Biodiversity values of remnant freshwater floodplain lagoons in agricultural catchments: evidence for fish of the Wet Tropics bioregion, northern Australia. Aquatic Conservation: marine and freshwater ecosystems , 25 (3). pp. 336-352.
Amies, Rachel, Bryant, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report August 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Amies, R.L., McCormack, C.V., and Rasheed, M.A. (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report July 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Amies, R.L., McCormack, C.V., and Rasheed, M.A. (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report June 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Amies, Rachel, McCormack, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report May 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Alvarez-Romero, Jorge G., Devlin, Michelle, da Silva, Eduardo Teixeira, Petus, Caroline, Ban, Natalie C., Pressey, Robert L., Kool, Johnathan, Roberts, Jason J., Cerdeira-Estrada, Sergio, Wenger, Amelia S., and Brodie, Jon (2013) A novel approach to model exposure of coastal-marine ecosystems to riverine flood plumes based on remote sensing techniques. Journal of Environmental Management, 119. pp. 194-207.
Amies, Rachel, McCormack, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report April 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Amies, Rachel, McCormack, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report March 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Augé, Amélie A., Maughan, Mirjam, Pressey, Robert L., Brodie, Jon, Dale, Allan, and Yorkston, Hugh (2013) Spatially explicit scenarios for conservation planning in the Great Barrier Reef coastal zone, Australia. In: Proceedings of the CoastGIS Conference 2013: monitoring and adapting to change on the coast. pp. 179-182. From: CoastGIS 2013: 11th International Symposium for GIS and Computer Cartography for Coastal Zone Management, 18-21 June 2013, Victoria, BC, Canada.
Alquezar, Ralph, Glendenning, Lionel, and Costanzo, Simon (2013) The use of the brown macroalgae, Sargassum flavicans, as a potential bioindicator of industrial nutrient enrichment. Marine Pollution Bulletin, 77 (1-2). pp. 140-146.
Aswani, Shankar, Christie, Patrick, Muthiga, Nyawira A., Mahon, Robin, Primavera, Jurgenne H., Cramer, Lori A., Granek, Elise F., Kennedy, Chris J., Wolanski, Eric, and Hacker, Sally (2012) The way forward with ecosystem-based management in tropical contexts: reconciling with existing management systems. Marine Policy, 36 (1). pp. 1-10.
Andutta, Fernando P., Ridd, Peter V., and Wolanski, Eric (2011) Dynamics of hypersaline coastal waters in the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 94 (4). pp. 299-305.
Amos, Kathryn J., Croke, Jacky C., Hughes, Andrew O., Chapman, Joanne, Takken, Ingrid, and Lymburner, Leo (2008) A catchment-scale assessment of anabranching in the 143 000 km2 Fitzroy River catchment, north-eastern Australia. Earth Surface Processes and Landforms, 33 (8). pp. 1222-1241.
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Bainbridge, Zoe T., Olley, Jon M., Lewis, Stephen E., Stevens, Tom, and Smithers, Scott G. (2024) Tracing sources of inorganic suspended particulate matter in the Great Barrier Reef lagoon, Australia. Scientific Reports, 14. 15651.
Burrows, Ryan M., Garzon-Garcia, Alexandra, Burton, Joanne, Lewis, Stephen E., Gruber, Renee K., Brodie, Jon E., and Burford, Michele A. (2023) Factors affecting broadscale variation in nearshore water-column organic carbon concentrations along the Great Barrier Reef. Regional Studies in Marine Science, 63. 103032.
Buñuel, Xavier, Alcoverro, Teresa, Boada, Jordi, Zinkunegi, Leire, Smith, Timothy M., Barrera, Anaïs, Casas, Marc, Farina, Simone, Pérez, Marta, Romero, Javier, Arthur, Rohan, and Pagès, Jordi F. (2023) Indirect grazing-induced mechanisms contribute to the resilience of Mediterranean seagrass meadows to sea urchin herbivory. Oikos, 2023 (6). e09520.
Bainbridge, Zoe, Olley, Jon, Wilkinson, Scott, Bartley, Rebecca, Lewis, Stephen, Dougall, Cameron, Khan, Sana, Kuhnert, Petra, and Burton, Joanne (2023) Refining fine sediment source identification through integration of spatial modelling, concentration monitoring and source tracing: A case study in the Great Barrier Reef catchments. Science of the Total Environment, 10. 164731.
Bremner, Julie, Petus, Caroline, Dolphin, Tony, Hawes, Jon, Beguet, Benoît, and Devlin, Michelle J. (2023) A Seagrass Mapping Toolbox for South Pacific Environments. Remote Sensing, 15 (3). 834.
Bradley, Michael, Sheaves, Marcus, and Waltham, Nathan J. (2023) Urban-industrial seascapes can be abundant and dynamic fish habitat. Frontiers in Marine Science, 9. 1034039.
Binks, Oliver, Cernusak, Lucas A., Liddell, Michael, Bradford, Matt, Coughlin, Ingrid, Bryant, Callum, Palma, Ana C., Hoffmann, Luke, Alam, Iftakharul, Carle, Hannah J., Rowland, Lucy, Oliveira, Rafael S., Laurance, Susan G.W., Mencuccini, Maurizio, and Meir, Patrick (2023) Vapour pressure deficit modulates hydraulic function and structure of tropical rainforests under nonlimiting soil water supply. New Phytologist, 240 (4). pp. 1405-1420.
Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Wang, Juntao, Shen, Jupei, Hou, Enqing, Rezaei Rashti, Mehran, Huang, Qiaoyun, Bainbridge, Zoe, and Stevens, Tom (2023) The origin of suspended particulate matter in the Great Barrier Reef. Nature Communications, 14. 5629.
Barrios-Garrido, Hector, Arias-Ortiz, Angela, Balladares, Clemente, Espinoza-Rodriguez, Ninive, Garcia-Cruz, Marco, Gonzalez, Maria F., Pulido-Petit, Graciela, Rojas-Cañizales, Daniela, Rondon-Medicci, Maria, Vernet, Pedro, and Wildermann, Natalie E. (2022) Records of Olive Ridley Marine Turtles (Lepidochelys olivacea Eschscholtz 1829) in Venezuelan Waters: A Review of Historical Data Sets and Threats. Chelonian Conservation and Biology, 21 (1). pp. 136-140.
Bigal, Eyal, Galili, Ori, van Rijn, Itai, Rosso, Massimiliano, Cleguer, Christophe, Hodgson, Amanda, Scheinin, Aviad, and Tchernov, Dan (2022) Reduction of Species Identification Errors in Surveys of Marine Wildlife Abundance Utilising Unoccupied Aerial Vehicles (UAVs). Remote Sensing, 14 (16). 4118.
Bell-James, Justine, Fitzsimons, James A., Gillies, Chris L., Shumway, Nicole, and Lovelock, Catherine E. (2022) Rolling covenants to protect coastal ecosystems in the face of sea-level rise. Conservation Science and Practice, 4 (1). e593.
Bahadori, Mohammad, Wang, Jun-Tao, Shen, Ju-pei, Lewis, Stephen, Rezaei Rashti, Mehran, and Chen, Chengrong (2022) Soil organic matter and geochemical characteristics shape microbial community composition and structure across different land uses in an Australian wet tropical catchment. Land Degradation and Development, 33 (6). pp. 817-831.
Boström-Einarsson, Lisa, Martínez-Baena, Francisco, Diggles, Ben, Firby, Lauren, and McLeod, Ian M. (2022) An ecological assessment of Australia's first community oyster gardens. Ecological Management and Restoration, 23 (3). pp. 244-251.
Bergstrom, Dana M., Wienecke, Barbara C., van der Hoff, John, Hughes, Lesley, Lindenmayer, David, Ainsworth, Tracy, Baker, Christopher M., Bland, Lucie, Bowman, David, Brooks, Shaun T., Canadell, Josep G., Constable, Andrew J., Dafforn, Katherine A., Depledge, Michael H., Dickson, Catherine R., Duke, Norman, Helmstedt, Kate J., Holz, Andres, Johnson, Craig, Mcgeoch, Melodie, Melbourne-thomas, Jessica, Morgain, Rachel, Nicholson, Emily, Prober, Suzanne, Raymond, Ben, Ritchie, Euan, Robinson, Sharon, Ruthrof, Katinka X., Setterfield, Samantha A., Sgro, Carla M., Stark, Jonathan S., Travers, Toby, Trebilco, Rowan, Ward, Delphi F.L., Wardle, Glenda, Williams, Kristen, Zylstra, Phillip J., and Shaw, Justine D. (2021) Ecosystem collapse from the tropics to the Antarctic: an assessment and response framework. Global Change Biology, 27. pp. 1692-1703.
Bergstrom, Dana, Wienecke, Barbara C., van den Hoff, John, Hughes, Lesley, Lindenmayer, David B., Ainsworth, Tracy D., Baker, Christopher M., Bland, Lucie, Bowman, David M.J.S., Brooks, Shaun T., Canadell, Josep G., Constable, Andrew J., Dafforn, Katherine, Depledge, Michael H., Dickson, Catherine, Duke, Norman C., Helmstedt, Kate J., Holz, Andres, Johnson, Craig R., McGeoch, Melodie A., Melbourne-thomas, Jessica, Morgain, Rachel, Nicholson, Emily, Prober, Suzanne M., Raymond, Ben, Ritchie, Euan G., Robinson, Sharon A., Ruthrof, Katinka X., Setterfield, Samantha A., Sgro, Carla M., Stark, Jonathan S., Travers, Toby, Trebilco, Rowan, Ward, Delphi F.L., Wardle, Glenda M., Williams, Kristen J., Zylstra, Phillip J., and Shaw, Justine D. (2021) Combating ecosystem collapse from the tropics to the Antarctic. Global Change Biology, 27. pp. 1692-1703.
Boyero, Luz, López-Rojo, Naiara, Pérez, Javier, Tonin, Alan M., Correa-Araneda, Francisco, Davis, Aaron, and Pearson, Richard G. (2021) Effects of gamma irradiation on instream leaf litter decomposition. Hydrobiologia, 848 (21). pp. 5223-5232.
Barrios-Garrido, Hector, De Turris-Morales, Kareen, and Espinoza-Rodriguez, Ninive Edilia (2021) Guiana Dolphin (Sotalia guianensis) in the Maracaibo Lake System, Venezuela: conservation, threats, and population overview. Frontiers in Marine Science, 7. 594021.
Boyero, Luz, López-Rojo, Naiara, Tonin, Alan M., Pérez, Javier, Correa-Araneda, Francisco, Pearson, Richard G., Bosch, Jaime, Albariño, Ricardo J., Anbalagan, Sankarappan, Barmuta, Leon A., Basaguren, Ana, Burdon, Francis J., Caliman, Adriano, Callisto, Marcos, Calor, Adolfo R., Campbell, Ian C., Cardinale, Bradley J., Jesús Casas, J., Chará-Serna, Ana M., Chauvet, Eric, Ciapała, Szymon, Colón-Gaud, Checo, Cornejo, Aydeé, Davis, Aaron M., Degebrodt, Monika, Dias, Emerson S., Díaz, Maria, Douglas, Michael M., Encalada, Andrea C., Figueroa, Ricardo, Flecker, Alexander S., Fleituch, Tadeusz, García, Erica A., García, Gabriela, García, Pavel E., Gessner, Mark O., Gómez, Jesús E., Gómez, Sergio, Gonçalves, Jose F., Graça, Manuel A.S., Gwinn, Daniel C., Hall, Robert O., Hamada, Neusa, Hui, Cang, Imazawa, Daichi, Iwata, Tomoya, Kariuki, Samuel K., Landeira-Dabarca, Andrea, Laymon, Kelsey, Leal, María, Marchant, Richard, Martins, Renato T., Masese, Frank O., Maul, Megan, McKie, Brendan G., Medeiros, Adriana O., Erimba, Charles M.M’, Middleton, Jen A., Monroy, Silvia, Muotka, Timo, Negishi, Junjiro N., Ramírez, Alonso, Richardson, John S., Rincón, José, Rubio-Ríos, Juan, dos Santos, Gisele M., Sarremejane, Romain, Sheldon, Fran, Sitati, Augustine, Tenkiano, Nathalie S.D., Tiegs, Scott D., Tolod, Janine R., Venarsky, Michael, Watson, Anne, and Yule, Catherine M. (2021) Impacts of detritivore diversity loss on instream decomposition are greatest in the tropics. Nature Communications, 12 (1). 3700.
Boyero, Luz, Pérez, Javier, López-Rojo, Naiara, Tonin, Alan M., Correa-Araneda, Francisco, Pearson, Richard G., Bosch, Jaime, Albariño, Ricardo J., Anbalagan, Sankarappan, Barmuta, Leon A., Beesley, Leah, Burdon, Francis J., Caliman, Adriano, Callisto, Marcos, Campbell, Ian C., Cardinale, Bradley J., Jesús Casas, J., Chará-Serna, Ana M., Ciapała, Szymon, Chauvet, Eric, Colón-Gaud, Checo, Cornejo, Aydeé, Davis, Aaron M., Degebrodt, Monika, Dias, Emerson S., Díaz, María E., Douglas, Michael M., Elosegi, Arturo, Encalada, Andrea C., De Eyto, Elvira, Figueroa, Ricardo, Flecker, Alexander S., Fleituch, Tadeusz, Frainer, André, França, Juliana S., García, Erica A., García, Gabriela, García, Pavel, Gessner, Mark O., Giller, Paul S., Gómez, Jesús E., Gómez, Sergio, Gonçalves, Jose F., Graça, Manuel A.S., Hall, Robert O., Hamada, Neusa, Hepp, Luiz U., Hui, Cang, Imazawa, Daichi, Iwata, Tomoya, Junior, Edson S.A., Kariuki, Samuel, Landeira-Dabarca, Andrea, Leal, María, Lehosmaa, Kaisa, M’Erimba, Charles, Marchant, Richard, Martins, Renato T., Masese, Frank O., Camden, Megan, McKie, Brendan G., Medeiros, Adriana O., Middleton, Jen A., Muotka, Timo, Negishi, Junjiro N., Pozo, Jesús, Ramírez, Alonso, Rezende, Renan S., Richardson, John S., Rincón, José, Rubio-Ríos, Juan, Serrano, Claudia, Shaffer, Angela R., Sheldon, Fran, Swan, Christopher M., Tenkiano, Nathalie S.D., Tiegs, Scott D., Tolod, Janine R., Vernasky, Michael, Watson, Anne, Yegon, Mourine J., and Yule, Catherine M. (2021) Latitude dictates plant diversity effects on instream decomposition. Science Advances, 7 (13). eabe7860.
Bainbridge, Zoe, Lewis, Stephen, Stevens, Thomas, Petus, Caroline, Lazarus, Emily, Gorman, Jessica, and Smithers, Scott (2021) Measuring sediment grain size across the catchment to reef continuum: improved methods and environmental insights. Marine Pollution Bulletin, 168. 112339.
Baker, Ronald, and Sheaves, Marcus (2021) Predation in littoral habitats is a complex process: Comment on Whitfield (2020). Marine Ecology - Progress Series, 662. pp. 205-208.
Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Boyd, Sue, Rashti, Mehran, Esfandbod, Maryam, Van Zwieten, Lukas, and Kuzyakov, Yakov (2021) Soil organic matter formation is controlled by the chemistry and bioavailability of organic carbon inputs across different land uses. Science of the Total Environment, 770. 145307.
Brodie, Jon E. (2021) Water Quality Studies in the Great Barrier Reef region and links to management, 1890 – 2016. Report. TropWATER, Townsville, QLD, Australia.
Butler, Barry, Pearson, Richard G., and Birtles, R. Alastair (2021) Water-quality and ecosystem impacts of recreation in streams: Monitoring and management. Environmental Challenges, 5. 100328.
Bostrom Einarsson, Lisa, Babcock, Russel C., Bayraktarov, Elisa, Ceccarelli, Daniella, Cook, Nathan, Ferse, Sebastian C.A., Hancock, Boze, Harrison, Peter, Hein, Margaux, Shaver, Elizabeth, Smith, Adam, Suggett, David, Stewart-sinclair, Phoebe J., Tardi, Tali, and McLeod, Ian M. (2020) Coral restoration – a systematic review of current methods, successes, failures and future directions. PLoS ONE, 15 (1). e0226631.
Benson, Lee, and Pearson, Richard G. (2020) Dynamics of organic material and invertebrates in a tropical headwater stream. Hydrobiologia, 847 (1). pp. 121-136.
Baker, Ronald, Taylor, Matthew D., Able, Kenneth W., Beck, Michael W., Cebrian, Just, Colombano, Denise D., Connolly, Rod M., Currin, Carolyn, Deegan, Linda A., Feller, Ilka C., Gilby, Ben L., Kimball, Matthew E., Minello, Thomas J., Rozas, Lawrence P., Simenstad, Charles, Turner, R. Eugene, Waltham, Nathan J., Weinstein, Michael P., Ziegler, Shelby L., zu Ermgassen, Philine S.E., Alcott, Caitlin, Alford, Scott B., Barbeau, Myriam A., Crosby, Sarah C., Dodds, Kate, Frank, Alyssa, Goeke, Janelle, Goodridge Gaines, Lucy A., Hardcastle, Felicity E., Henderson, Christopher J., James, W. Ryan, Kenworthy, Matthew D., Lesser, Justin, Mallick, Debbrota, Martin, Charles W., McDonald, Ashley E., McLuckie, Catherine, Morrison, Blair H., Nelson, James A., Norris, Gregory S., Ollerhead, Jeff, Pahl, James W., Ramsden, Sarah, Rehage, Jennifer S., Reinhardt, James F., Rezek, Ryan J., Risse, L. Mark, Smith, Joseph A.M., Sparks, Eric L., and Staver, Lorie W. (2020) Fisheries rely on threatened salt marshes. Science, 370 (6517). pp. 670-671.
Baptista, Vânia, Leitão, Francisco, Morais, Pedro, Teodósio, Maria Alexandra, and Wolanski, Eric (2020) Modelling the ingress of a temperate fish larva into a nursery coastal lagoon. Estuarine, Coastal and Shelf Science, 235. 106601.
Bryant, C.V., Wilkinson, J.S., Chartrand, K.M., van de Wetering, C., and Rasheed, M.A. (2020) Port of Townsville Seagrass Monitoring Program: Interim report: April 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Bayraktarov, Elisa, Brisbane, Shantala, Hagger, Valerie, Smith, Carter S., Wilson, Kerrie A., Lovelock, Catherine E., Gillies, Chris, Steven, Andrew D.L., and Saunders, Megan I. (2020) Priorities and motivations of marine coastal restoration research. Frontiers in Marine Science, 7. 484.
Buelow, Christina A., and Waltham, Nathan J. (2020) Restoring tropical coastal wetland water quality: ecosystem service provisioning by a native freshwater bivalve. Aquatic Sciences, 82. 77.
Barrios-Garrido, H., Becker, P., Bjorndal, K.A., Bolten, A.B., Diez, C.E., Espinoza-rodriguez, N., Fastigi, M., Gray, J., Harrison, E., Hart, K.A., Meylan, A., Meylan, P., Montiel-villalobos, M.G., Morales, F., Nava, M., Palmar, J., Petit-Rodriguez, M.J., Richardson, P., Rodriguez-Clark, K.M., Rojas-Canizales, D., Sandoval, M.G., Valverde, R.A., van Dam, R., Walker, J.T., Wildermann, N., and Hamann, M. (2020) Sources and movements of marine turtles in the Gulf of Venezuela: regional and local assessments. Regional Studies in Marine Science, 36. 101318.
Baker, Ronald, and Waltham, Nathan (2020) Tethering mobile aquatic organisms to measure predation: a renewed call for caution. Journal of Experimental Marine Biology and Ecology, 523. 151270.
Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Rashti, Mehran Rezaei, Cook, Freeman, Parnell, Andrew, Esfandbod, Maryam, and Stevens, Thomas (2020) Tracing the sources of sediment and associated particulate nitrogen from different land uses in the Johnstone River catchment, Wet Tropics, northeastern Australia. Marine Pollution Bulletin, 157. 111344.
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Barbier, Edward B, Koch, Evamaria W., Silliman, Brian R., Hacker, Sally D., Wolanski, Eric, Primavera, Jurgenne, Granek, Elise F., Polasky, Stephen, Aswani, Shankar, Cramer , Lori A., Stoms, David M., Kennedy, Chris J., Bael, David, Kappel, Carrie V., Perillo, Gerardo M.E., and Reed, Denise J. (2008) Coastal ecosystem–based management with nonlinear ecological functions and values. Science, 319. pp. 321-323.
Bohnet, Iris, Brodie, Jon, and Bartley, Rebecca (2008) Assessing water quality impacts of community defined land use change scenarios for the Douglas Shire, Far North Queensland. In: Pettit, Christopher, Cartwright, William, Bishop, Ian, Lowell, Kim, Pullar, David, and Duncan, David, (eds.) Landscape Analysis and Visualisation: spatial models for natural resource management and planning. Springer, Berlin, Heidleberg, pp. 383-406.
Bainbridge, Zoe, Brodie, Jon, Manning, Chris, Waterhouse, Jane, Lewis, Stephen, Gooch, Margaret, and Broderick, Kathleen (2008) Integrated Monitoring and Modelling Strategy for the Black Ross Water Quality Improvement Plan. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.
Brodie, J., and Fabricius, K. (2008) Terrestrial runoff to the Great Barrier Reef and the implications for its long term ecological status. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 108-113.
Brodie, Jon, Bainbridge, Zoe, and Lewis, Stephen (2008) Tully Murray Water Quality Monitory Strategy. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.
Brodie, Jon, and Bainbridge, Zoe (2008) Water Quality Targets for the Burdekin Water Quality Improvement Plan. ACTFR Report No. 08/05 for the Burdekin Dry Tropics NRM. Report. James Cook University, Townsville, QLD, Australia.
Brodie, J., De'ath, G., Devlin, M., Furnas, M., and Wright, M. (2007) Spatial and temporal patterns of near-surface chlorophyll a in the Great Barrier Reef lagoon. Marine and Freshwater Research, 58 (4). pp. 342-353.
Butler, Barry, Loong, Dom, and Burrows, Damien (2007) Accumulation of metals in stream sediments of the Upper Walsh River Catchment, North Queensland. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.
Burrows, Damien, and Butler, Barry (2007) Determining end-point goals and effective strategies for rehabilitation of Coastal Wetlands: examples from the Burdekin River, North Queensland. In: Proceedings of the 5th Australian Stream Management Conference: Australian Rivers: Making a Difference. pp. 49-54. From: 5th Australian Stream Management Conference: Australian Rivers: Making a Difference, 21-25 May 2007, Albury, NSW.
Butler, Barry, and Burrows, Damien W. (2007) Dissolved Oxygen Guidelines for Freshwater Habitats of Northern Australia. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.
Butler, Barry, Burrows, Damien, and Pearson, Richard (2007) Providing regional NRM with improved aquatic health risk assessment and monitoring tools: the nationally significant indication: dissolved oxygen. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.
Bainbridge, Z.T., Lewis, S.E., and Brodie, J.E. (2007) Sediment and nutrient exports for the Burdekin River catchment, north Queensland: a comparison of monitoring and modelling data. In: Proceedings of MODSIM07: the International Congress on Modelling and Simulation. pp. 874-880. From: MODSIM07: International Congress on Modelling and Simulation, 10-13 December 2007, Christchurch, New Zealand.
Brodie, Jon, Fabricius, Katharina, De'ath, Glenn, and Okaji, Ken (2005) Are increased nutrient inputs responsible for more outbreaks of crown-of-thorns starfish? an appraisal of the evidence. Marine Pollution Bulletin, 51 (1-4). pp. 266-278.
Brodie, Jon E., and Mitchell, Alan W. (2005) Nutrients in Australian tropical rivers: changes with agricultural development and implications for receiving environments. Marine and Freshwater Research, 56 (3). pp. 279-302.
Barfod, Anders S., and Dowe, John Leslie (2005) The enigmatic Australian fan-palm Licuala ramsayi. Palms, 49 (1). pp. 15-23.
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Burrows, Damien (2004) Aquatic ecosystems. In: McCullough, Marnie, and Musso, Barbara, (eds.) Healthy Rangelands: principles for sustainable systems. Focus on Australia's Burdekin rangelands. Tropical Savannas CRC, pp. 148-170.
Brinkman, R., Wolanski, E., and Spagnol, S. (2004) Field and model studies of the nepheloid layer in coastal waters of the Great Barrier Reef, Australia. In: Jirka, Gerhard H., and Uijttewaal, Wim S.J., (eds.) Shallow Flows. Taylor & Francis, London, UK, pp. 225-229.
Brodie, Jon , and Furnas, Miles (2003) Status of nutrient and sediment inputs from great Barrier Reef catchments and impacts on the Reef. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.
Brodie, Jon E., McKergow, Lucy A., Prosser, Ian P., Furnas, Miles, Hughes, Andrew O., and Hunter, Heather (2003) Sources of sediment and nutrient exports to the Great Barrier Reef World Heritage Area. Report. Australian Centre for Tropical Freshwater Research, Townsville, Australia.
Brodie, J., Mitchell, A., Furnas, M., Haynes, D., Waterhouse, J., Ghonim, S., Morris, S., Yorkston, H., and Audas, D. (2003) Developing catchment pollutant load targets for the protection of the Great Barrier Reef. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20-23 November 2001, Townsville, QLD, Australia.
Brodie, Jon (2003) The Great Barrier Reef: 25 Years of management as a large marine ecosystem. In: Hempel, Gotthilf, and Sherman, Kenneth, (eds.) Large Marine Ecosystems of the World: trends in exploitation, protection, and research. Elsevier, The Netherlands, pp. 313-336.
Burns, K.A., Codi, S., and Duke, N.C. (2000) Gladstone, Australia field studies: weathering and degradation of hydrocarbons in oiled mangrove and salt marsh sediments with and without the application of an experimental bioremediation protocol. Marine Pollution Bulletin, 41 (7-12). pp. 392-402.
Burrows, Damien (2000) Literature review of the potential impacts of grazing on aquatic and riparian ecosystems in the Australian dry tropical rangelands. Report. James Cook University, Townsville, QLD, Australia.
Burrows, Damien, Faithful, John, Kutt, Alex, Tait, Jim, and Blunden, Lynda (1999) Environmental study of a proposed dam at Mount Douglas on the Belyando River. Report. James Cook University, Townsville, QLD, Australia.
Burrows, Damien W. (1999) Review of buffer widths for Oonoonba School Lagoon. Report. James Cook University, Townsville, QLD, Australia.
Burrows, Damien W., and Kutt, Alex (1999) Review of environmental factors - Flinders Highway (Gardner Creek to Burra Range). Report. James Cook University, Townsville, QLD, Australia.
Burrows, Damien W. (1999) Review of environmental factors - Tully - Hull Road. Report. James Cook University, Townsville, QLD, Australia.
Butler, B., and Lukacs, G. (1999) Water quality planning Elliott main channel. Report. James Cook University, Townsville, QLD, Australia.
Burrows, Damien W., Pusey, Bradley, Werren, Garry, Walsh, Kerry, Kutt, Alex, Cumming, Russell, and Cohen, Martin (1999) An initial environmental assessment of water infrastructure options in the Burdekin Catchment. Report. James Cook University, Townsville, QLD, Australia.
Burrows, Damien W., Kutt, Alex S., and Kemp, Jeanette E. (1998) Burdekin catchment study – a desktop study of environmental issues associated with dam and irrigation area development. Report. James Cook University, Townsville, QLD, Australia.
Butler, Barry, and Tait, Jim (1998) DNR training course on bioaccumulation - workbook. Report. James Cook University, Townsville, QLD, Australia.
Burrows, Damien W. (1998) FNQ 2010 regional environment strategy. Key waterways report. Report. James Cook University, Townsville, QLD, Australia.
Burrows, Damien W., and Butler, Barry (1998) Literature review and scoping study of the potential downstream impacts of the proposed Nathan Dam on the Dawson River, Fitzroy River and offshore environments. Report. James Cook University, Townsville, QLD, Australia.
Burrows, Damien W. (1998) PNG gas project. Wetland and watercourse crossing study. Cable Beach to Gladstone. Report. James Cook University, Townsville, QLD, Australia.
Burrows, Damien W. (1998) Reed beds pump station and pipeline environmental review. Report. James Cook University, Townsville, QLD, Australia.
Burrows, Damien W., Tait, Jim P., and Webb, Alan C. (1998) A brief biological survey of Idalia Lagoon, Townsville. Report. James Cook University, Townsville, QLD, Australia.
Burrows, Damien W. (1997) Papua New Guinea to Queensland Gas Pipeline wetland and watercourse crossing study Cape York to Gladstone. Report. James Cook University, Townsville, QLD, Australia.
Burrows, Damien W. (1997) Papua New Guinea to Queensland gas pipeline: butterfly desktop review. Report. James Cook University, Townsville, QLD, Australia.
Butler, B.M., and Taylor, J.P. (1996) Comalco Weipa water quality investigation stage 1. Report. James Cook University, Townsville, QLD, Australia.
Butler, Barry, Birtles, Alastair, Pearson, Richard, and Jones, Kim (1996) Ecotourism, water quality and wet tropics streams. Report. James Cook University, Townsville, QLD, Australia.
Burrows, D.W., Kutt, A.S., and Cumming, R.J. (1996) Pandora gas pipeline Palmer River to Townsville section. Report. James Cook University, Townsville, QLD, Australia.
Burrows, Damien Wayne (2003) The role of insect leaf herbivory on the mangroves Avicennia marina and Rhizophora stylosa. PhD thesis, James Cook University.
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Cleguer, C., Hamel, M.A., Rankin, R.W., Langlois, L., Edwards, C., and Marsh, H. (2024) 2023 Dugong Aerial Survey: Mission Beach to Cape York. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Cartwright, Paula, Browne, Nicola, Fearns, Peter, O'leary, Mick, and Lowe, Ryan (2024) Applying ensemble climate models to predict the fate of marginal coral reefs already existing at thermal and turbidity limits in arid tropical Australia. Climate Resilience and Sustainability, 3 (1). e66.
Carter, A., McKenna, S., Rasheed, M.A., Taylor, H., van de Wetering, C., Chartrand, K., Reason, C., Collier, C., Shepherd, L., Mellors, J., McKenzie, L., Duke, N.C., Roelofs, A., Smit, N., Groom, R., Barrett, D., Evans, S., Pitcher, R., Murphy, N., Carlisle, M., David, M., Lui, S., Torres Strait Indigenous Rangers, , and Coles, R.G. (2024) Seagrass spatial data synthesis from north-east Australia, Torres Strait and Gulf of Carpentaria, 1983 to 2022. Limnology and Oceanography Letters, 9 (1). pp. 7-22.
Cleguer, Christophe, Garrigue, Claire, Fuentes, Mariana M.P.B., Hamann, Mark, Payri, Claude, and Marsh, Helene (2024) Temporal changes in habitat use by dugongs in a spatially restricted coral reef environment. Pacific Conservation Biology, 30 (2). PC23036.
Cleguer, Christophe, Hamel, Melanie, Rankin, Robert, Genson, Allyson, Edwards, Chloe, Collins, Kym, Crowe, Michael, Choukroun, Severine, and Marsh, Helene (2023) 2022 Dugong Aerial Survey: Mission Beach to Moreton Bay. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Canning, Adam D., Smart, James C.R., Dyke, Joshua, Curwen, Graeme, Hasan, Syezlin, and Waltham, Nathan J. (2023) Constructed Wetlands Suitability for Sugarcane Profitability, Freshwater Biodiversity and Ecosystem Services. Environmental Management, 71. pp. 304-320.
Canning, A.D., and Death, R.G. (2023) Establishing riverine nutrient criteria using individual taxa thresholds. Water Research, 246. 120731.
Chung, Christine T.Y., Hope, Pandora, Hutley, Lindsay B., Brown, Josephine, and Duke, Norman C. (2023) Future climate change will increase risk to mangrove health in Northern Australia. Communications Earth & Environment, 4. 192.
Cook, Nathan, Cook, Kailash, Harris, Kaitlyn J., Songcuan, Al, and Smith, Adam (2023) Lessons learned implementing mineral accretion and coral gardening at Agincourt Reef, Great Barrier Reef. Ecological Management & Restoration, 24 (2-3). pp. 107-118.
Ceccarelli, Daniela M., Evans, Richard D., Logan, Murray, Jones, Geoffrey P., Puotinen, Marji, Petus, Caroline, Russ, Garry R., Srinivasan, Maya, and Williamson, David H. (2023) Physical, biological and anthropogenic drivers of spatial patterns of coral reef fish assemblages at regional and local scales. Science of the Total Environment, 904. 166695.
Cartwright, Paula, Waltham, Nathan, and Iles, Jordan (2023) Southern Mackay Ambient Marine Water Quality Monitoring Program: Annual Report 2021-2022. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Cameron, Kerry, Chartrand, Katie, Cameron, Grant, Miller, Ross, Shepherd, Lloyd, Concannon, Tess, and Singleton, Tarquin (2023) Stay or spray? Evaluating larval delivery strategies in a multi-partner coral reef restoration project across Gunggandji and Yirrganydji Sea Country. In: [Presented at the Australian Marine Sciences Association Conference 2023]. From: Australian Marine Sciences Association Conference 2023: Science in Sea Country, 2-7 July 2023, Gold Coast, QLD, Australia.
Cadier, Charles, Waltham, Nathan J., Canning, Adam, Fry, Scott, and Adame, Maria (2023) Tidal restoration to reduce greenhouse gas emissions from freshwater impounded coastal wetlands. Restoration Ecology, 31 (8). e13829.
Carter, A., Allan, S., Scott, A., Rasheed, M.A., and Torres Strait Regional Authority Land and Sea Rangers, (2023) Torres Strait Seagrass Report Card 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Cartwright, Paula, Waltham, Nathan, and Iles, Jordan (2023) Whitsunday Water Quality Monitoring Blueprint for Tourism Operators: Annual report 2021-2022. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Cleguer, C., and Marsh, H. (2023) An inventory of dugong aerial surveys in Australia. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Carter, Alex B., Coles, Rob, Jarvis, Jessie C., Bryant, Catherine V., Smith, Timothy M., and Rasheed, Michael A. (2023) A report card approach to describe temporal and spatial trends in parameters for coastal seagrass habitats. Scientific Reports, 13. 2295.
Campbell, Cherie J., James, Cassandra S., Morris, Kaylene, Nicol, Jason M., Thomas, Rachael F., Nielsen, Daryl L., Gehrig, Susan L., Palmer, Gary J., Wassens, Skye, Dyer, Fiona, Southwell, Mark, Watt, Robin J., Bond, Nick R., and Capon, Samantha J. (2022) Blue, green and in-between: objectives and approaches for evaluating wetland flow regimes based on vegetation outcomes. Marine and Freshwater Research, 73. pp. 1212-1224.
Castle, Alicia, and Waltham, Nathan (2022) Clearance rates achieved by an intertidal oyster, Isognomon ephippium, under different tidal emersion and temperature conditions. Estuarine, Coastal and Shelf Science, 276. 108018.
Carter, Alex B., Collier, Catherine, Coles, Robert, Lawrence, Emma, and Rasheed, Michael A. (2022) Community-specific "desired" states for seagrasses through cycles of loss and recovery. Journal of Environmental Management, 314. 115059.
Chartrand, Katie, Mumby, Peter, Ridley, Andy, Roelfsema, Chris, and Uusitalo, Jasmina (2022) Great Reef Census – A scalable shared economy approach to reconnaissance survey reef ecosystems. In: [Presented at the Australian Marine Sciences Association 2022 Conference]. From: Australian Marine Science Association Conference 2022: Change and connections, 7-12 August 2022, Cairns, QLD, Australia.
Cook, P.A., Warnock, B., Gillies, C.L., and Hams, A.B. (2022) Historical abundance and distribution of the native flat oyster (Ostrea angasi) in estuaries of the Great Southern region of Western Australia help to prioritise potential sites for contemporary oyster reef restoration. Marine and Freshwater Research, 73 (1). pp. 48-56.
Claassens, L., de Villiers, N.M., and Waltham, N.J. (2022) How developed is the South African coast? Baseline extent of South Africa’s coastal and estuarine infrastructure. Ocean and Coastal Management, 222. 106112.
Cook, Nathan, Smith, Adam, Songcuan, Al, Cassidy, Daniel, Sartori, Greta, and McLeod, Ian (2022) Lessons learned from small-scale coral outplanting intervention at a restoration site on the Great Barrier Reef. Ecological Management and Restoration, 23 (1). pp. 89-93.
Canning, Adam, and Duke, Norm (2022) Monitoring mangrove threats across the Torres Straits using remote-sensing. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Clough, B., Amir, A.A., Chong, V.C., Duke, N.C., Field, C.D., Kjerfve, B., Lee, S.Y., Sasekumar, A., Wong, S.C., Yong, J.W.H., and Gong, W.K. (2022) OBITUARY Dr. Ong Jin Eong (August 28, 1943–August 5, 2021). Estuarine, Coastal and Shelf Science, 266. 107746.
Chartrand, K.M, and Scott, A. (2022) Pilot survey of deep-water seagrasses using the Great Reef Census framework. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Cartwright, Paula, Iles, Jordan, and Waltham, Nathan (2022) Port of Abbot Point Ambient Marine Water Quality Monitoring Program: Annual Report 2021-2022. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Cartwright, P., Iles, J.A., and Waltham, N.J. (2022) Port of Mackay and Hay Point Ambient Marine Water Quality Monitoring Program: Annual Report 2021-2022. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Cooper, Madalyn K., Villacorta-Rath, Cecilia, Burrows, Damien, Jerry, Dean R., Carr, Leah, Barnett, Adam, Huveneers, Charlie, and Simpfendorfer, Colin A. (2022) Practical eDNA sampling methods inferred from particle size distribution and comparison of capture techniques for a Critically Endangered elasmobranch. Environmental DNA, 4 (5). pp. 1011-1023.
Chartrand, K.M., Carter, A.B., Hoffmann, L., and Smith, T. (2022) Progress Report: MARRS Monitoring Trial at Moore Reef – June 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Canning, Adam D. (2022) Rediscovering wild food to diversify production across Australia's agricultural landscapes. Frontiers in Sustainable Food Systems, 6. 865580.
Cleguer, Christophe (2022) Review of dugong detections from images collected during a dugong survey in New Caledonia. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Carter, A., Hoffmann, L.R., Scott, A., David, M., Torres Strait Regional Authority Land and Sea Rangers, , and Rasheed, M.A. (2022) Torres Strait Seagrass Report Card 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Cartwright, Paula, Iles, Jordan, Mattone, Carlo, O'Callaghan, Mark, and Waltham, Nathan (2022) Turbidity (NTU) to Suspended Sediment Concentration (SSC) Conversion Protocol. Report. TropWATER, Townsville, QLD, Australia.
Comeros-Raynal, Mia T., Brodie, Jon, Bainbridge, Zoe, Choat, John Howard, Curtis, Meagan, Lewis, Stephen, Stevens, Thomas, Shuler, Christopher K., Sudek, Mareike, and Hoey, Andrew S. (2021) Catchment to sea connection: impacts of terrestrial run-off on benthic ecosystems in American Samoa. Marine Pollution Bulletin, 169. 112530.
Colombano, Denise D., Litvin, Steven Y., Ziegler, Shelby L., Alford, Scott B., Baker, Ronald, Barbeau, Myriam A., Cebrián, Just, Connolly, Rod M., Currin, Carolyn A., Deegan, Linda A., Lesser, Justin S., Martin, Charles W., McDonald, Ashley E., McLuckie, Catherine, Morrison, Blair H., Pahl, James W., Risse, L. Mark, Smith, Joseph A.M., Staver, Lorie W., Turner, R. Eugene, and Waltham, Nathan J. (2021) Climate change implications for tidal marshes and food web linkages to estuarine and coastal nekton. Estuaries and Coasts, 44. pp. 1637-1648.
Creighton, Colin, Waterhouse, Jane, Day, Jon C., and Brodie, Jon (2021) Criteria for effective regional scale catchment to reef management: a case study of Australia's Great Barrier Reef. Marine Pollution Bulletin, 173 (Part A). 112882.
Canning, Adam D., and Waltham, Nathan J. (2021) Ecological impact assessment of climate change and habitat loss on wetland vertebrate assemblages of the Great Barrier Reef catchment and the influence of survey bias. Ecology and Evolution, 11 (10). pp. 5244-5254.
Chilton, Daniel, Hamilton, David P., Nagelkerken, Ivan, Cook, Perran, Hipsey, Matthew R., Reid, Robert, Sheaves, Marcus, Waltham, Nathan J., and Brookes, Justin (2021) Environmental flow requirements of estuaries: providing resilience to current and future climate and direct anthropogenic changes. Frontiers in Environmental Science, 9. 764218.
Canning, Adam D., Jarvis, Diane, Costanza, Robert, Hasan, Syezlin, Smart, James C.R., Finisdore, John, Lovelock, Catherine E., Greenhalgh, Suzie, Marr, Helen M., Beck, Michael W., Gillies, Christopher L., and Waltham, Nathan J. (2021) Financial incentives for large-scale wetland restoration: beyond markets to common asset trusts. One Earth, 4 (7). pp. 937-950.
Cooper, Madalyn K., Huerlimann, Roger, Edmunds, Richard C., Budd, Alyssa M., Le Port, Agnes, Kyne, Peter M., Jerry, Dean R., and Simpfendorfer, Colin A. (2021) Improved detection sensitivity using an optimal eDNA preservation and extraction workflow and its application to threatened sawfishes. Aquatic Conservation: marine and freshwater ecosystems, 31 (8). pp. 2131-2148.
Canning, Adam D., Joy, Michael K., and Death, Russell G. (2021) Nutrient criteria to achieve New Zealand’s riverine macroinvertebrate targets. PeerJ, 9. e11556.
Canning, Adam D., Death, Russell G., and Waltham, Nathan J. (2021) Pharmaceutical companies should pay for raiding nature's medicine cabinet. Lancet, 398 (10303). pp. 840-841.
Chartrand, K.N., Hoffmann, L.R., Ayling, A., and Ayling, T. (2021) Port of Abbot Point Ambient Coral Monitoring Surveys: 2020-2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Chartrand, K.M., Hoffmann, L.R., Ayling, A., and Ayling, T. (2021) Ports of Mackay and Hay Point Ambient Coral Monitoring Surveys: 2020-2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Chartrand, K.M., and Carter, A.B. (2021) Reef Restoration Foundation Fitzroy Island Coral Habitat Assessment: June 2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Carter, A.B., Kish, H., and Chartrand, K. (2021) Reef Restoration Foundation Fitzroy Island Coral Nursery Monitoring: methods and results April - October 2020. Report. James Cook University, Cairns, QLD, Australia.
Carter, Alex, Coles, Rob, Rasheed, Michael, and Collier, Catherine J. (2021) Seagrass communities of the Great Barrier Reef and their desired state: applications for spatial planning and management. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.
Carter, A.B., McKenna, S.A., and Shepherd, L. (2021) Subtidal seagrass of western Torres Strait. Report. James Cook University, Cairns, QLD, Australia.
Carter, Alex B., McKenna, Skye A., Rasheed, Michael A., Collier, Catherine, McKenzie, Len, Pitcher, Roland, and Coles, Rob (2021) Synthesizing 35 years of seagrass spatial data from the Great Barrier Reef World Heritage Area, Queensland, Australia. Limnology and Oceanography Letters, 6 (4). pp. 216-226.
Carter, Alexandra, Wilkinson, Juliette, David, Madeina, and Lukac, Micaela (2021) Torres Strait Eastern Cluster: intertidal seagrass baseline survey. Report. James Cook University, Cairns, QLD, Australia.
Carter, Alexandra, David, Madeina, Whap, Terrence, Hoffman, Luke, Scott, Abigail, and Rasheed, Michael (2021) Torres Strait Seagrass 2021 Report Card. Report. James Cook University, Cairns, QLD, Australia.
Collier, C.J., Langlois, L.M., McMahon, K.M., Udy, J., Rasheed, M., Lawrence, E., Carter, A.B., Fraser, M.W., and McKenzie, L.J. (2021) What lies beneath: predicting seagrass below-ground biomass from above-ground biomass, environmental conditions and seagrass community composition. Ecological Indicators, 121. 107156.
Canto, Marites M., Fabricius, Katharina E., Logan, Murray, Lewis, Stephen, McKinna, Lachlan I.W., and Robson, Barbara J. (2021) A benthic light index of water quality in the Great Barrier Reef, Australia. Marine Pollution Bulletin, 169. 112539.
Canning, Adam D., and Death, Russell G. (2021) The influence of nutrient enrichment on riverine food web function and stability. Ecology and Evolution, 11 (4). pp. 942-954.
Carter, Alex B., Collier, Catherine, Lawrence, Emma, Rasheed, Michael A., Robson, Barbara J., and Coles, Rob (2021) A spatial analysis of seagrass habitat and community diversity in the Great Barrier Reef World Heritage Area. Scientific Reports, 11. 22344.
Connolly, Niall M., and Pearson, Richard G. (2020) Do constrained immigration rates and high beta diversity explain contrasting productivity-diversity patterns measured at different scales? Oecologia, 194 (3). pp. 481-490.
Chartrand, K.M., Fletcher-Leonhardt, J.D., and Rasheed, M.A. (2020) Green Island Jetty Repairs Coral Monitoring Report – December 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Chartrand, K.M., and Wilkinson, J. (2020) Port of Townsville Chanel Upgrade Project: Western Breakwater Seagrass Assessment April 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Chartrand, K.M., Wilkinson, J.S., and Rasheed, M.A. (2020) Port of Townsville Seagrass Monitoring Program, interim report: Sept/Oct 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Carter, A.B., Kish, H., and Chartrand, K. (2020) Reef Restoration Foundation Hastings Reef Coral Nursery Monitoring: December 2019 - July 2020. Report. James Cook University, Cairns, QLD, Australia.
Crawford, C., Edgar, G., Gillies, C. L., and Heller-Wagner, G. (2020) Relationship of biological communities to habitat structure on the largest remnant flat oyster reef (Ostrea angasi) in Australia. Marine and Freshwater Research, 71 (8). pp. 972-983.
Ceccarelli, Daniela M., McLeod, Ian M., Boström-Einarsson, Lisa, Bryan, Scott E., Chartrand, Kathryn M., Emslie, Michael J., Gibbs, Mark T., Gonzalez Rivero, Manuel, Hein, Margaux Y., Heyward, Andrew, Kenyon, Tania M., Lewis, Brett M., Newlands, Maxine, Mattocks, Neil, Schläppy, Marie-Lise, Suggett, David J., and Bay, Line K. (2020) Substrate stabilisation and small structures in coral restoration: state of knowledge, and considerations for management and implementation. PLoS ONE, 15 (10). e0240846.
Carter, Alexandra, Mellors, Jane, Whap, Terrence, and Hoffman, Luke (2020) Torres Strait Seagrass 2020 Report Card. Report. James Cook University, Cairns, QLD, Australia.
Collier, C.J., Carter, A.B., Rasheed, M., McKenzie, L., Udy, J., Coles, R., Brodie, J., Waycott, M., O’Brien, K.R., Saunders, M., Adams, M., Martin, K., Honchin, C., Petus, C., and Lawrence, E. (2020) An evidence-based approach for setting desired state in a complex Great Barrier Reef seagrass ecosystem: a case study from Cleveland Bay. Environmental and Sustainability Indicators, 7. 100042.
Canning, Adam D., and Death, Russell G. (2019) Ecosystem health indicators - freshwater environments. In: Fath, Brian D., (ed.) Encyclopedia of Ecology. Elsevier, pp. 46-60.
Canning, Adam Douglas, and Death, Russell George (2019) Food web structure but not robustness differ between rivers, lakes and estuaries. Oecologia Australis, 23 (1). pp. 112-126.
Canning, Adam D., Death, Russell G., and Gardner, Erna M. (2019) Forest canopy affects stream macroinvertebrate assemblage structure but not trophic stability. Freshwater Science, 38 (1). pp. 40-52.
Carter, Alex, Chartrand, Katie, Wells, Jaclyn, and Rasheed, Michael (2019) Gladstone Healthy Harbour Partnership 2019 Report Card, ISP011: seagrass. Report. James Cook University, Cairns, QLD, Australia.
Ceccarelli, Daniela M., Evans, Richard D., Logan, Murray, Mantel, Philippa, Puotinen, Marji, Petus, Caroline, Russ, Garry R., and Williamson, David H. (2019) Long-term dynamics and drivers of coral and macroalgal cover on inshore reefs of the Great Barrier Reef Marine Park. Ecological Applications. e02008.
Chartrand, Katie, Rasheed, Michael, Bryant, Catherine, Pernice, Mathieu, and Ralph, Peter (2019) New science informing effective management of the often overlooked deep-water seagrasses of tropical Australia. In: [Presented at the Australian Marine Sciences Association 2019 Conference]. From: Australian Marine Sciences Association Conference 2019: Marine Science for a Blue Economy, 7-11 July 2019, Fremantle, WA, Australia.
Critchell, Kay, Hamann, Mark, Wildermann, Natalie, and Grech, Alana (2019) Predicting the exposure of coastal species to plastic pollution in a complex island archipelago. Environmental Pollution, 252, Part B. pp. 982-991.
Creighton, Colin, Prahalad, Vishnu N., McLeod, Ian, Sheaves, Marcus, Taylor, Matthew D., and Walshe, Terry (2019) Prospects for seascape repair: three case studies from eastern Australia. Ecological Management and Restoration, 20 (3).
Chartrand, K., Wells, J., Carter, A., and Rasheed, M. (2019) Seagrasses in Port Curtis and Rodds Bay 2018: Annual long-term monitoring. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Carter, Alexandra, Coles, Robert, Grech, Alana, McKenna, Skye, Rasheed, Michael, McKenzie, Len, and Duke, Norman (2019) Spatial data as a baseline for managing coastal seagrasses in Queensland, Australia. In: [Presented at the CERF Biennial Conference]. From: The 25th Biennial CERF Conference, 3–7 November, 2019, Mobile, AL, USA.
Carter, A.B., Mellors, J.E., Reason, C., and Rasheed, M.A. (2019) Torres Strait Seagrass 2019 Report Card. Report. UNSPECIFIED, Cairns, QLD, Australia.
Collier, Catherine, Langlois, Lucas, Ow, Yan, Johansson, Charlotte, Giammusso, Manuela, Adams, Matthew, O'brien, Katherine, and Uthicke, Sven (2018) Losing a winner: thermal stress and local pressures outweigh the positive effects of ocean acidification for tropical seagrasses. New Phytologist, 219 (3). pp. 1005-1017.
Critchell, Kay, and Hoogenboom, Mia O. (2018) Effects of microplastic exposure on the body condition and behaviour of planktivorous reef fish (Acanthochromis polyacanthus). PLoS ONE, 13 (3). e0193308.
Cook, Peter G., Rodellas, Valentí, Adnrisoa, Aladin, and Stieglitz, Thomas C. (2018) Exchange across the sediment-water interface quantified from porewater radon profiles. Journal of Hydrology, 559. pp. 873-883.
Caron, Alexandra G.M., Thomas, Colette R., Berry, Kathryn L.E., Motti, Cherie A., Ariel, Ellen, and Brodie, Jon E. (2018) Ingestion of microplastic debris by green sea turtles (Chelonia mydas) in the Great Barrier Reef: validation of a sequential extraction protocol. Marine Pollution Bulletin, 127. pp. 743-751.
Chartrand, Kathryn M., Szabó, Milán, Sinutok, Sutinee, Rasheed, Michael A., and Ralph, Peter J. (2018) Living at the margins - the response of deep-water seagrasses to light and temperature renders them susceptible to acute impacts. Marine Environmental Research, 136. 126 - 138.
Carter, Alex, and Rasheed, Michael (2018) Mackay-Whitsunday 2017 Baseline Seagrass Survey: Marine Inshore South Zone. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Cook, Peter G., Rodellas, Valentí, and Stieglitz, Thomas C. (2018) Quantifying surface water, porewater, and groundwater interactions using tracers: tracer fluxes, water fluxes, and end‐member concentrations. Water Resources Research, 54 (3). pp. 2452-2465.
Ceccarelli, Daniela M., Loffler, Zoe, Bourne, David G., Al Moajil-Cole, Grace S., Boström Einarsson, Lisa, Evans-Illidge, Elizabeth, Fabricius, Katharina, Glasl, Bettina, Marshall, Paul, McLeod, Ian, Read, Mark, Schaffelke, Britta, Smith, Adam K., Jorda, Georgina T., Williamson, David H., and Bay, Line (2018) Rehabilitation of coral reefs through removal of macroalgae: state of knowledge and considerations for management and implementation. Restoration Ecology, 26 (5). pp. 827-838.
Chartrand, K.M., Rasheed, M.A., and Carter, A.B. (2018) Seagrasses in Port Curtis and Rodds Bay 2017: annual long-term monitoring. Report. James Cook University, Cairns, QLD, Australia.
Carter, A.B., Mellors, J.E., and Rasheed, M.A. (2018) Torres Strait Seagrass 2018 Report Card. Report. James Cook University, Cairns, QLD, Australia.
Carter, A.B., and Rasheed, M.A. (2018) Torres Strait Seagrass Long-term Monitoring: dugong sanctuary, Dungeness Reef and Orman Reefs. Report. James Cook University, Cairns, QLD, Australia.
Caron, Alexandra G.M., Thomas, Colette R., Berry, Kathryn L.E., Motti, Cherie A., Ariel, Ellen, and Brodie, Jon E. (2018) Validation of an optimised protocol for quantification of microplastics in heterogenous samples: a case study using green turtle chyme. MethodsX, 5. pp. 812-823.
Cooper, Michelle, Lewis, Stephen E., Stieglitz, Thomas C., and Smithers, Scott G. (2018) Variability of the useful life of reservoirs in tropical locations: a case study from the Burdekin Falls Dam, Australia. International Journal of Sediment Research, 33. pp. 93-106.
Carter, A.B., Collier, C., Rasheed, M.A., McKenzie, L., and Udy, J. (2018) A framework for defining seagrass habitat for the Great Barrier Reef, Australia. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.
Carter, A.B., Davies, C.R., Emslie, M.J., Mapstone, B.D., Russ, G.R., Tobin, A.J., and Williams, A.J. (2017) Reproductive benefits of no-take marine reserves vary with region for an exploited coral reef fish. Scientific Reports, 7. 9693. pp. 1-12.
Clarke, David A., York, Paul H., Rasheed, Michael A., and Northfield, Tobin D. (2017) Does biodiversity–ecosystem function literature neglect tropical ecosystems? Trends in Ecology & Evolution, 32 (5). pp. 320-323.
Cumming, Erin, Jarvis, Jessie C., Sherman, Craig, York, Paul H., and Smith, Timothy M. (2017) Seed germination in a southern Australian temperate seagrass. PeerJ, 5. e3114. pp. 1-19.
Cousins, Stephen, Kennard, Mark J., and Ebner, Brendan C. (2017) Depth-related composition and structuring of tropical riverine fish assemblages revealed by baited video. Marine and Freshwater Research, 68 (10). pp. 1965-1975.
Carter, Alex, Davies, Jaclyn, Jarvis, Jessie, McCormack, Catherine, and Rasheed, Michael (2017) Development of a condition report card for variable and diverse seagrass meadows in ports. In: Proceedings of the Australasian Coasts & Ports 2017 Conference. pp. 1152-1158. From: Australasian Coasts & Ports 2017 Conference: working with nature, 21-23 June 2017, Cairns, QLD, Australia.
Chartrand, K.M., Bryant, C.V., Sozou, A., Ralph, P.J., and Rasheed, M.A. (2017) Final Report: Deep-water seagrass dynamics - Light requirements, seasonal change and mechanisms of recruitment. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Carter, Alex, Wells, Jaclyn, and Rasheed, Michael (2017) Gladstone Healthy Harbour Partnership 2017 Report Card, ISP011: seagrass. Report. James Cook University, Cairns, QLD, Australia.
Cairns, Andi, Davis, Linda, and Pearson, Richard (2017) Guide to the riffle invertebrates of Australian Wet Tropics streams with a bibliography of their ecology. Report. TropWater, Townsville, QLD, Australia.
Clarke, David A., York, Paul H., Rasheed, Michael A., and Northfield, Tobin D. (2017) Identifying areas of need in tropical research: a reply to Stroud and Feeley. Trends in Ecology & Evolution, 32 (9). p. 628.
Chartrand, Katie, Wells, Jaclyn, and Rasheed, Michael (2017) Long-Term Seagrass Monitoring in Port Curtis and Rodds Bay: Quarterly Permanent Transect Monitoring, 2009 to 2016 – Final Report. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Collier, Catherine J., Xiang, Yan Ow, Langlois, Lucas, Uthicke, Sven, Johansson, Charlotte, Hrebien, Victoria, O'Brien, Kate, and Adams, Matthew P. (2017) Optimum temperatures for net primary productivity of three tropical seagrass species. Frontiers in Plant Science, 8. 1446. pp. 1-32.
Cook, Benjamin D., Adams, Mark, Unmack, Peter J., Burrows, Damien, Pusey, Bradley J., Perna, Colton, and Hughes, Jane M. (2017) Phylogeography of the mouth-brooding freshwater fish Glossamia aprion (Apogonidae) in northern and eastern Australia: historical biogeography and allopatric speciation. Biological Journal of the Linnean Society, 121 (4). pp. 833-848.
Cooper, Michelle, Lewis, Stephen E., and Smithers, Scott G. (2017) Spatial and temporal dynamics of suspended sediment causing persistent turbidity in a large reservoir: Lake Dalrymple, Queensland, Australia. Marine and Freshwater Research, 68 (7). pp. 1377-1390.
Carter, A., Coles, R., McKenna, S., and Rasheed, M. (2017) Spatial management tools for coastal seagrasses in Queensland, Australia. In: Proceedings of the Australasian Coasts & Ports 2017 Conference. pp. 226-232. From: Proceedings of the Australasian Coasts & Ports 2017 Conference, 21-23 June 2017, Cairns, QLD, Australia.
Carter, A.B., Wells, J.N., and Rasheed, M.A. (2017) Torres Strait Seagrass – Dungeness Reef Baseline Survey and Dugong Sanctuary Long-term Monitoring. Report. James Cook University, Cairns, QLD, Australia.
Canning, A.D., Death, R.G., and Gardner, E.M. (2017) The effect of forest canopy and flood disturbance on New Zealand stream food web structure and robustness. Austral Ecology, 43 (3). pp. 352-358.
Collier, C.J., Adams, M.P., Langlois, L., Waycott, M., O'Brien, K.R., Maxwell, P.S., and McKenzie, L. (2016) Thresholds for morphological response to light reduction for four tropical seagrass species. Ecological Indicators, 67. pp. 358-366.
Chaiechi, Taha, Stoeckl, Natalie, Jarvis, Diane, Lewis, Stephen, and Brodie, Jon (2016) Assessing the impact of price changes and extreme climatic events on sediment loads in a large river catchment near the Great Barrier Reef. Australian Journal of Agricultural and Resource Economics, 60 (3). pp. 386-405.
Carter, Alex, Bryant, Catherine, Davies, Jaclyn, and Rasheed, Michael (2016) Gladstone Healthy Harbour Partnership 2016 Report Card: ISP011: seagrass. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Clayton, P.D., and Pearson, R.G. (2016) Harsh habitats? Waterfalls and their faunal dynamics in tropical Australia. Hydrobiologia, 775 (1). pp. 123-137.
Connolly, Rod, Dunn, Ryan, Jackson, Emma, Kristensen, Erik, Maxwell, Paul, Pearson, Ryan, Rasheed, Michael, and York, Paul (2016) Gold Coast Seagrass Sensitivities and Resilience (SRMP-003). Report. Griffith University, Gold Coast, QLD, Australia.
Connolly, Niall, Pearson, Richard, and Pearson, Benjamin (2016) Riparian vegetation and sediment gradients determine invertebrate diversity in streams draining an agricultural landscape. Agriculture, Ecosystems and Environment, 221. pp. 163-173.
Clark, Tara R., Leonard, Nicole D., Zhao, Jian-xin, Brodie, Jon, McCook, Laurence J., Wachenfeld, David R., Nguyen, Ai Duc, Markham, Hannah L., and Pandolfi, John M. (2016) Historical photographs revisited: a case study for dating and characterizing recent loss of coral cover on the inshore Great Barrier Reef. Scientific Reports, 6. 19285. pp. 1-14.
Carter, A.B, and Rasheed, M.A. (2016) Assessment of Key Dugong and Turtle Seagrass Resources in North-west Torres Strait. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.
Connolly, Rod, Dunn, Ryan, Flindt, Mogens, Jackson, Emma, Kristensen, Erik, McKenna, Skye, Olds, Andrew, Rasheed, Michael, Schlacher, Thomas, and York, Paul (2016) Assessment of the effects of foreshore nourishment and mitigation projects on seagrass ecosystems (SRMP-004). Report. Griffith University, Gold Coast, Australia.
Cooper, W.E., Kudo, H., and Duke, Norman C. (2016) Bruguiera hainesii C.G.Rogers (Rhizophoraceae), an endangered species recently discovered in Australia. Austrobaileya, 9 (4). pp. 481-488.
Collier, Catherine J., Langlois, Lucas, Zemoi, Rahel, Martin, Katherine, and McKenzie, Len (2016) Developing and refining biological indicators for condition assessments in an integrated monitoring program. Report. James Cook University, Cairns, Australia.
Collier, Catherine J., Chartrand, Katie, Honchin, Carol, Fletcher, Adam, and Rasheed, Michael (2016) Light thresholds for seagrasses of the GBRWHA: a synthesis and guiding document. Report. James Cook University, Cairns, Australia.
Chartrand, Kathryn M., Bryant, Catherine V., Carter, Alexandra B., Ralph, Peter J., and Rasheed, Michael A. (2016) Light thresholds to prevent dredging impacts on the Great Barrier Reef seagrass, Zostera muelleri ssp. capricorni. Frontiers in Marine Science, 3. 106.
Connolly, Rod, Dunn, Ryan, Kovacs, Eva, Maxwell, Paul, McKenna, Skye, Phinn, Stuart, Rasheed, Michael, Roelfsema, Chris, and York, Paul (2016) Marine plant habitat and monitoring program (SRMP-002)[Report to Gold Coast Waterways Authority]. Report. Griffith University, Gold Coast, Australia.
Critchell, Kay, and Lambrechts, Jonathan (2016) Modelling accumulation of marine plastics in the coastal zone; what are the dominant physical processes? Estuarine, Coastal and Shelf Science , 171. pp. 111-122.
Capon, Samatha, James, Cassandra, and George, Amy (2016) Riverine trees and shrubs. In: Capon, Samatha J., James, Cassandra S., and Reid, Michael, (eds.) Vegetation of Australian Riverine Landscapes: biology, ecology and management. CSIRO Publishing, Melbourne, VIC, Australia, pp. 119-141.
Carter, Alex B., McKenna, Skye A., Rasheed, Michael A., McKenzie, Len J., and Coles, Robert G. (2016) Seagrass mapping synthesis: a resource for coastal management in the Great Barrier Reef World Heritage Area. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.
Coles, R.G., Rasheed, M.A., Grech, A., and McKenzie, L.J. (2016) Seagrass meadows of northeastern Australia. In: Finlayson, C.M., Milton, G.R., Prentice, R.C., and Davidson, N.C., (eds.) The Wetland Book: distribution description and conservation. Springer, Dordrecht, The Netherlands, pp. 1-9.
Chartrand, Katie, Rasheed, Michael, and Ralph, Peter (2016) Under pressure...how to succeed as a deepwater seagrass. In: [Presented at the 13th International Coral Reef Symposium]. From: 13th International Coral Reef Symposium, 19-24 June 2016, Honolulu, HI, USA.
Capon, Samatha J., Porter, John, and James, Cassandra S. (2016) Vegetation of Australia's desert river landscapes. In: Capon, Samatha J., James, Cassandra S., and Reid, Michael, (eds.) Vegetation of Australian Riverine Landscapes: biology, ecology and management. CSIRO Publishing, Melbourne, VIC, Australia, pp. 239-258.
Connolly, N.M., Pearson, R.G., Loong, D., Maughan, M., and Brodie, J. (2015) Water quality variation along streams with similar agricultural development but contrasting riparian vegetation. Agriculture, Ecosystems and Environment, 213. pp. 11-20.
Critchell, K., Grech, A., Schlaefer, J., Andutta, F.P., Lambrechts, J., Wolanski, E., and Hamann, M. (2015) Modelling the fate of marine debris along a complex shoreline: lessons from the Great Barrier Reef. Estuarine, Coastal and Shelf Science , 167 (Part B). pp. 414-426.
Carter, A.B., Davies, J.D., Bryant, C.V., Jarvis, J.C., McKenna, S.A., and Rasheed, M.A. (2015) Seagrasses in Port Curtis and Rodds Bay 2014: annual long-term monitoring, biannual western basin, and updated baseline survey. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Coles, Robert G., Rasheed, Michael A., McKenzie, Len J., Grech, Alana, York, Paul H., Sheaves, Marcus, McKenna, Skye, and Bryant, Catherine (2015) The Great Barrier Reef World Heritage Area seagrasses: managing this iconic Australian ecosystem resource for the future. Estuarine, Coastal and Shelf Science , 153. A1-A12.
Carter, Alex, Bryant, Catherine, Jarvis, Jessie, York, Paul, and Rasheed, Michael (2015) Developing thresholds and indicators of seagrass meadow condition using long-term monitoring data. In: Abstracts from the 52nd Australian Marine Science Association Annual Conference. p. 90. From: AMSA 2015: 52nd Australian Marine Science Association Annual Conference, 5-9 July 2015, Geelong, VIC, Australia.
Carter, Alex, Jarvis, Jessie, Bryant, Catherine, and Rasheed, Michael (2015) Development of seagrass indicators for the Gladstone Healthy Harbour Partnership report card. Report. James Cook University, Cairns, QLD, Australia.
Creighton, Colin, Boon, Paul I., Brookes, Justin D., and Sheaves, Marcus (2015) Repairing Australia's estuaries for improved fisheries production: what benefits, at what cost? Marine and Freshwater Research, 66 (6). pp. 493-507.
Chartrand, K.M., Ralph, P.J., and Rasheed, M.A. (2015) Under pressure – How to succeed as a deepwater seagrass. In: [Presented at CERF 2015]. From: CERF 2015: Grand Challenges in Coastal & Estuarine Science: Securing Our Future, 8-12 November 2015, Portland, Oregon USA.
Carter, Alex, Taylor, Helen, and Rasheed, Michael (2014) Torres Strait mapping: seagrass consolidation: 2002-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Carter, A.B., Taylor, H.A., McKenna, S.A., York, P.Y., and Rasheed, M.A. (2014) The effects of climate on seagrasses in the Torres Strait: 2011-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Carter, Alex, Taylor, Helen, and Rasheed, Michael (2014) Torres Strait dugong sanctuary: deepwater seagrass monitoring 2010-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Carter, A.B., Taylor, H.A., McKenna, S.A., and Rasheed, M.A. (2014) Long-term seagrass monitoring in the Port of Thursday Island: March 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Cullen-Unsworth, Leanne C., Nordlund, Lina Mtwana, Paddock, Jessica, Baker, Susan, McKenzie, Len, and Unsworth, Richard K.F. (2014) Seagrass meadows globally as a coupled social–ecological system: implications for human wellbeing. Marine Pollution Bulletin, 83 (2). pp. 387-397.
Carter, Alex, and Rasheed, Michael (2014) Critical marine habitats in high risk areas, South Warden Reef to Howick Group region: 2013 atlas. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Carter, Alex B., Davies, Campbell R., Mapstone, Bruce D., Russ, Garry R., Tobin, Andrew J., and Williams, Ashley J. (2014) Effects of region, demography, and protection from fishing on batch fecundity of common coral trout (Plectropomus leopardus). Coral Reefs, 33 (3). pp. 751-763.
Collier, Catherine J., Devlin, Michelle, Langlois, Lucas, McKenzie, Len J., Petus, Caroline, Da Silva, Eduardo Teixeira, McMahon, Kathryn, Adams, Matthew, O'Brien, Kate, Statton, John, and Waycott, Michelle (2014) Final report on thresholds and indicators of declining water quality as tools for tropical seagrass management. Report. James Cook University, Townsville, Australia.
Carter, A.B., Russ, G.R., Tobin, A.J., Williams, A.J., Davies, C.R., and Mapstone, B.D. (2014) Spatial variation in the effects of size and age on reproductive dynamics of common coral trout Plectropomus leopardus. Journal of Fish Biology, 84 (4). pp. 1074-1098.
Coles, Rob, Short, Fred, Miguel, Fortes, and Kuo, John (2014) Twenty years of seagrass networking and advancing seagrass science: the International Seagrass Biology Workshop Series. Pacific Conservation Biology, 20 (1). pp. 8-16.
Carter, Alex, Taylor, Helen, McKenna, Skye, York, Paul, and Rasheed, Michael (2014) The effect of climate on seagass in the Torres Strait: 2011-2014. Report. TropWATER, Cairns, QLD, Australia.
Calver, Michael C., Beatty, Stephen J., Bryant, Kate A., Dickman, Christopher R., Ebner, Brendan C., and Morgan, David L. (2013) Users beware: implications of database errors when assessing the individual research records of ecologists and conservation biologists. Pacific Conservation Biology, 19 (3/4). pp. 320-330.
Chartrand, K., McCormack, C., Thomas, R., Rasheed, M., and Ralph, P. (2013) Environmental tolerances and drivers of deepwater seagrass change: implications and tools for coastal development management. In: 22nd Biennial Conference of the Coastal and Estuarine Research Federation: abstract book. p. 39. From: CERF2013 Toward Resilient Coasts and Estuaries, Science for Sustainable Solutions, 3-7 November 2013, San Diego, California.
Cooke, Steven J., Midwood, Jonathan D., Thiem, Jason D., Klimley, Peter, Lucas, Martin C., Thorstad, Eva B., Eiler, John, Holbrook, Chris, and Ebner, Brendan C. (2013) Tracking animals in freshwater with electronic tags: past, present and future. Animal Biotelemetry, 1 (May). 5. pp. 1-19.
Carter, A.B., McKenna, S.A., and Rasheed, M.A. (2013) Port of Weipa long‐term seagrass monitoring: August 2012. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Carter, Alex, Taylor, Helen, McKenna, Skye, and Rasheed, Michael (2013) Critical marine habitats in high risk areas, Torres Strait: Seo Reef to Kai-Wareg Reef: 2013 atlas. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Carter, Alex, and Rasheed, Michael (2013) Critical marine habitats in high risk areas: Bathurst Bay region: 2012 atlas. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Chartrand, Katie, Ralph, Peter, Petrou, Katherina, and Rasheed, Michael (2012) Development of a Light-Based Seagrass Management Approach for the Gladstone Western Basin Dredging Program. Report. Queensland Department of Agriculture, Fisheries and Forestry, Cairns, QLD, Australia.
Carter, Alex, Mapstone, Bruce, Russ, Garry, Tobin, Andrew, and Williams, Ashley (2012) Reproductive benefits of no-take reserves vary atitudinally for Plectropomus leopardus. In: Abstracts from the 12th International Coral Reef Symposium. pp. 259-260. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.
Carroll, Chris, Waters, David, Vardy, Suzanne, Silburn, David M., Attard, Steve, Thorburn, Peter J., Davis, Aaron M., Halpin, Neil, Schmidt, Michael, Wilson, Bruce, and Clark, Andrew (2012) A paddock to reef monitoring and modelling framework for the Great Barrier Reef: paddock and catchment component. Marine Pollution Bulletin, 65 (4-9). pp. 136-149.
Carter, Alex, Carton, Guy, Russ, Garry, Tobin, Andrew, and Williams, Ashley (2011) Significant variation in spawning frequency of common coral trout, Plectropomus leopardus, on the Great Barrier Reef. In: Abstracts from the 48th Annual Conference of the Australian Marine Sciences Association. p. 35. From: AMSA 2011: 48th Annual Conference of the Australian Marine Sciences Association, 3-7 July 2011, Fremantle, WA, Australia.
Costanza, R., Bohensky, E., Butler, J.R.A., Bohnet, I., Delisle, A., Fabricius, K., Gooch, M., Kubiszewski, I., Lukacs, G., Pert, P., and Wolanski, E. (2011) A scencario analysis of climate change and ecosystem services for the Great Barrier Reef. In: Wolanski, Eric, McLusky, Donald, van den Belt, M., and Costanza, R., (eds.) Ecological Economics of Estuaries and Coasts. Treatise on Estuarine and Coastal Science, 12 . Academic Press, London, UK, pp. 305-326.
Chen, Zhongyuan, Yanagi, Tetsuo, and Wolanski, Eric (2010) EMECS8 – harmonizing catchment and estuary. Estuarine, Coastal and Shelf Science, 86 (3). v-v.
Carter, Alexandra, Mapstone, Bruce, Russ, Garry, Tobin, Andrew, and Williams, Ashley (2009) Regional variation in the benefit of no-take marine reserves on reproductive output of the common coral trout, Plectropomus leopardus. In: Abstracts from the Australian National Network in Marine Science Inaugural Conference. From: ANNIMS 2009: Australian National Network in Marine Science Inaugural Conference, 1-2 December 2009, Hobart, TAS, Australia.
Cannicci, Stefano, Burrows, Damien, Fratini, Sara, Smith III, Thomas J., Offenberg, Joachim, and Dahdouh-Guebas, Farid (2008) Faunal impact on vegetation structure and ecosystem function in mangrove forests: a review. Aquatic Botany, 89 (2). pp. 189-200.
Coughlin, Tom, O'Reagain, Peter, Nelson, Brigid, Butler, Barry, and Burrows, Damien (2008) Managing for Water Quality within Grazing Lands for the Burdekin Catchment: guidelines for land managers. Report. Burdekin Solutions, Townsville, QLD, Australia.
Connolly, Niall M., and Pearson, Richard G. (2007) The effect of fine sedimentation on tropical stream macroinvertebrate assemblages: a comparison using flow-through artificial stream channels and recirculating mesocosms. Hydrobiologia, 592 (1). pp. 423-438.
Coles, Rob, Grech, Alana, Dew, Kara, Zeller, Brad, and McKenzie, Leonard (2007) A preliminary report on the adequacy of protection provided to species and benthic habitats in the east coast otter trawl fishery by the current system of closures. Report. UNSPECIFIED, Cairns, QLD, Australia.
Cappo, Mike, De'ath, Glenn, Boyle, Steve, Aumend, James, Olbrich, Roland, Hoedt, Frank, Perna, Colton, and Brunskill, Gregg (2005) Development of a robust classifier of freshwater residence in barramundi (Lates calcarifer) life histories using elemental ratios in scales and boosted regression trees. Marine and Freshwater Research, 56 (5). pp. 713-723.
Cooper, Michelle, Faithful, John W., and Shields, Graham (2005) Sediment dynamics of a large tropical river system: the Burdekin River and Lake Dalrymple, Australia. In: Proceedings of 10th International Symposium on the interactions between sediments and water. p. 198. From: 10th International Symposium on the interactions between sediments and water, 28 August - 2 September 2005, Bled, Slovenia.
Connolly, N. M., Crossland, M.R., and Pearson, R.G. (2004) Effect of low dissolved oxygen on survival, emergence, and drift of tropical stream macroinvertebrates. Journal of the North American Benthological Society, 23 (2). pp. 251-270.
Connor, Ron, Milsom, John, Melzer, Alistair, Butler, Barry M., Faithful, John W., Dennison, William, Lloyd, Trevor, and Swaine, Greg (2003) Ecosystem-based assessment and management of marine and estuarine systems at the Queensland Nickel Yabulu Refinery, Townsville. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.
Cairns, A., Richards, M., and Lukacs, G. (2000) Catchment study - Gustav Creek, Magnetic Island. Report. James Cook University, Townsville, QLD, Australia.
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Connolly, Niall, Doak, Naomi, and Pearson, Richard (1996) Environmental literature scan of the Barron River Catchment. Report. James Cook University, Townsville, QLD, Australia.
Crees, Mark, and Butler, Barry (1996) Feasibilty of using constructed wetlands for the treatment of effluent at Horseshoe Bay. Report. James Cook University, Townsville, QLD, Australia.
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Duke, Norman, and Lee, Shing Yip (2024) 2.4. The diversity of mangroves. Towards an authoritative list of the world’s mangrove plants. Report Section. Global Mangrove Alliance.
Duke, Norman C., Canning, Adam D., and Mackenzie, Jock R. (2024) More intense severe tropical cyclones in recent decades cause greater impacts on mangroves bordering Australia’s Great Barrier Reef. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, Florida, USA, pp. 226-253.
De Brauwer, Maarten, Clarke, Laurence J., Chariton, Anthony, Cooper, Madalyn K., De Bruyn, Mark, Furlan, Elise, Macdonald, Anna J., Rourke, Meaghan L., Sherman, Craig D.H., Suter, Leonie, Villacorta Rath, Cecilia, Zaiko, Anastasija, and Trujillo-González, Alejandro (2023) Best practice guidelines for environmental DNA biomonitoring in Australia and New Zealand. Environmental DNA, 5 (3). pp. 417-423.
de la Fuente Pinero, Alejandro, and Williams, Stephen E. (2023) Climate change threatens the future of rain forest ringtail possums by 2050. Diversity and Distributions, 29 (1). pp. 173-183.
Douglas, Sophia R.L., Tebbett, Sterling B., Choukroun, Severine, Goatley, Christopher H.R., and Bellwood, David R. (2023) Depth stratified light trap sampling reveals variation in the depth distribution of late-stage cryptobenthic reef fish larvae. Coral Reefs, 42 (2). pp. 507-512.
Duke, Norman C., Virly, Sabrina, and Tracey, Dieter (2023) New Caledonian mangroves: A treasure to protect. MangroveWatch Publications, Currumbin, Queensland, Australia.
Donaldson, James C., Maeda, Ken, Iida, Midori, Kobayashi, Hirozumi, Ebner, Brendan C., and Tran, Hau Duc (2023) New distributional records of four amphidromous gobies (Gobioidei: Sicydiinae) in continental Vietnam / Nouvelles occurrences pour quatre gobies amphidromes (Gobioidei : Sicydiinae) au Vietnam continental. Cybium, 47 (4). pp. 467-472.
Duarte de Paula Costa, Micheli, Adame, Maria Fernanda, Bryant, Catherine V., Hill, Jack, Kellaway, Jeffrey J., Lovelock, Catherine E., Ola, Anne, Rasheed, Michael A., Salinas, Christian, Serrano, Oscar, Waltham, Nathan, York, Paul H., Young, Mary, and Macreadie, Peter (2023) Quantifying blue carbon stocks and the role of protected areas to conserve coastal wetlands. Science of the Total Environment, 874. 162518.
Devlin, Michelle J., Petus, Caroline, and Oubelkheir, Kadija (2023) Special Issue Overview: Advances in Remote Sensing and Mapping for Integrated Studies of Reef Ecosystems in Oceania (Great Barrier Reef and Beyond). Remote Sensing, 15 (10). 2505.
Duke, Norman (2022) Climate change killed 40 million Australian mangroves in 2015. Here’s why they’ll probably never grow back. The Conversation, 28 July 2022.
Duke, Norman Clive, Mackenzie, Jock R., Canning, Adam, Hutley, Lindsay B., Bourke, Adam J., Kovacs, John, Cormier, Riley, Staben, Grant, Lymburner, Leo, and Ai, Emma (2022) ENSO-driven extreme oscillations in mean sea level destabilise critical shoreline mangroves—An emerging threat. PLOS Climate, 1 (8). e0000037.
Derville, Solene, Cleguer, Christophe, and Garrigue, Claire (2022) Ecoregional and temporal dynamics of dugong habitat use in a complex coral reef lagoon ecosystem. Scientific Reports, 12. 552.
Deutsch, Charles J., Castelblanco-Martinez, Delma Nataly, Cleguer, Christophe, and Groom, Rachel (2022) Movement Behavior of Manatees and Dugongs: II. Small-Scale Movements Reflect Adaptations to Dynamic Aquatic Environments. In: Marsh, Helene, (ed.) Ethology and Behavioural Ecology of Sirenia. Ethology and Behavioral Ecology of Marine Mammals . Springer Nature, Cham, Switzerland, pp. 233-298.
Davis, Meredith T., Canning, Adam D., Midwinter, Anne C., and Death, Russell G. (2022) Nitrate enrichment does not affect enteropathogenic Escherichia coli in aquatic microcosms but may affect other strains present in aquatic habitats. PeerJ, 10. e13914.
Duke, Norman C., McKenzie, Jock, Canning, Adam, Kovacs, John, Cormier, Riley, and Castle, Ysabel (2022) PCPA CHAMP – Port Curtis and Port Alma coastal habitat archive and monitoring program – Final Report. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Dubuc, Alexia, Collins, Geoffrey, Coleman, Laura, Waltham, Nathan J., Rummer, Jodie L., and Sheaves, Marcus (2021) Association between physiological performance and short temporal changes in habitat utilisation modulated by environmental factors. Marine Environmental Research, 170. 105448.
Dalby, Oliver, Sinha, Isadora, Unsworth, Richard K.F., McKenzie, Len J., Jones, Benjamin L., and Cullen-Unsworth, Leanne C. (2021) Citizen science driven big data collection requires improved and inclusive societal engagement. Frontiers in Marine Science, 8. 610397.
Duarte de Paula Costa, Micheli, Lovelock, Catherine E., Waltham, Nathan J., Young, Mary, Adame, Maria F., Bryant, Catherine V., Butler, Don, Green, David, Rasheed, Michael A., Salinas, Cristian, Serrano, Oscar, York, Paul H., Whitt, Ashley A., and Macreadie, Peter I. (2021) Current and future carbon stocks in coastal wetlands within the Great Barrier Reef catchments. Global Change Biology, 27 (14). pp. 3257-3271.
Dunstan, Laura, Pulman, Lisa, Waltham, Nathan, and Sargent, Sue (2021) Finding the sweet spot: Can social marketing encourage cane farmers to change practices for water quality outcomes in the Great Barrier Reef Catchment? In: Hay, Rachel, Eagle, Lynne, and Bhati, Abhishek, (eds.) Broadening Cultural Horizons in Social Marketing: comparing case studies from Asia-Pacific. Springer, Singapore, pp. 29-46.
Duarte de Paula Costa, Micheli, Lovelock, Catherine E., Waltham, Nathan C., Moritsch, Monica, Butler, Don, Power, Trent, Thomas, Evan, and Macreadie, Peter I. (2021) Modelling blue carbon farming opportunities at different spatial scales. Journal of Environmental Management, 301. 113813.
Duke, Norman C., Hutley, Lindsay B., Mackenzie, Jock R., and Burrows, Damien (2021) Processes and factors driving change in mangrove forests: an evaluation based on the mass dieback event in Australia’s Gulf of Carpentaria. In: Canadell, Josep G., and Jackson, Robert B., (eds.) Ecosystem Collapse and Climate Change. Ecological Studies, 241 . Springer International Publishing, Cham, Switzerland, pp. 221-264.
Davis, Aaron M., Webster, Anthony J., Fitch, Peter, Fielke, Simon, Taylor, Bruce M., Morris, Sheriden, and Thorburn, Peter J. (2021) The changing face of science communication, technology, extension and improved decision-making at the farm-water quality interface. Marine Pollution Bulletin, 169. 112534.
Devlin, Michelle J., Lyons, Brett P., Johnson, Johanna, and Hills, Jeremy (2021) The tropical Pacific Oceanscape: Current issues, solutions and future possibilities. Marine Pollution Bulletin, 166. 112181. pp. 1-10.
Devlin, Michelle, Smith, Andy, Graves, Carolyn A., Petus, Caroline, Tracey, Dieter, Maniel, Michael, Hooper, Eryn, Kotra, Kryshna, Samie, Erie, Loubser, David, and Lyons, Brett P. (2020) Baseline assessment of coastal water quality, in Vanuatu, South Pacific: insights gained from in-situ sampling. Marine Pollution Bulletin, 160. 111651.
Davis, Aaron M., Pusey, Bradley J., and Betancur-R, Ricardo (2020) Effects of adoption of freshwater residency on life-history ecology of terapontid grunters. Freshwater Biology, 65. pp. 1139-1152.
Duke, Norman (2020) Mangrove harbingers of coastal degradation seen in their responses to global climate change coupled with ever-increasing human pressures. Human Ecology Journal of the Commonwealth Human Ecology Council – Mangrove Special Issue, 30 (April 2020). pp. 19-23.
Dahdouh-guebas, Farid, Ajonina, Gordon N., Amir, A. Aldrie, Andradi-brown, Dominic A., Aziz, Irfan, Balke, Thorsten, Barbier, Edward B., Cannicci, Stefano, Cragg, Simon M., Cunha-Lignon, Marília, Curnick, David J., Duarte, Carlos M., Duke, Norman C., Endsor, Charlie, Fratini, Sara, Feller, Ilka C., Fromard, François, Hugé, Jean, Huxham, Mark, Kairo, James G., Kajita, Tadashi, Kathiresan, Kandasamy, Koedam, Nico, Lee, Shing Yip, Lin, Hsing-Juh, Mackenzie, Jock R., Mangora, Mwita M., Marchand, Cyril, Meziane, Tarik, Minchinton, Todd E., Pettorelli, Nathalie, Polanía, Jaime, Polgar, Gianluca, Poti, Meenakshi, Primavera, Jurgenne, Quarto, Alfredo, Rog, Stefanie M., Satyanarayana, Behara, Schaeffer-Novelli, Yara, Spalding, Mark D., Van der Stocken, Tom, Wodehouse, Dominic, Yong, Jean W.H., Zimmer, Martin, and Friess, Daniel A. (2020) Public perceptions of mangrove forests matter for their conservation. Frontiers in Marine Science, 7. 603651.
de los Santos, Carmen, Scott, Abigail, Arias-Ortiz, Ariane, Jones, Benjamin, Kennedy, Hilary, Mazarrasa, Inés, McKenzie, Len, Nordlund, Lina, de la Torre-Castro, Maricela, Unsworth, Richard, and Ambo-Rappe, Rohani (2020) Seagrass ecosystem services: Assessment of scale and benefits. Report Section. UNEP, Nairobi, Kenya.
Duke, N.C. (2020) A systematic revision of the vulnerable mangrove genus Pelliciera (Tetrameristaceae) in equatorial America. Blumea, 65. pp. 107-120.
Dubuc, Alexia, Baker, Ronald, Marchand, Cyril, Waltham, Nathan J., and Sheaves, Marcus (2019) Hypoxia in mangroves: occurrence and impact on valuable tropical fish habitat. Biogeosciences, 16 (20). pp. 3959-3976.
Donaldson, James A., Drews, Paulo, Bradley, Michael, Morgan, David L., Baker, Ronald, and Ebner, Brendan C. (2019) Countering low visibility in video survey of an estuarine fish assemblage. Pacific Conservation Biology, 26 (2). pp. 190-200.
Dunn, Ryan J.K., Welsh, David T., Teasdale, Peter R., Gilbert, Franck, Poggiale, Jean-Christopher, and Waltham, Nathan J. (2019) Effects of the bioturbating marine yabby Trypaea australiensis on sediment properties in sandy sediments receiving mangrove leaf litter. Journal of Marine Science and Engineering, 7 (12). 426.
David, Marine, Bailly-Comte, Vincent, Munaron, Dominique, Fiandrino, Annie, and Stieglitz, Thomas C. (2019) Groundwater discharge to coastal streams – a significant pathway for nitrogen inputs to a hypertrophic Mediterranean coastal lagoon. Science of the Total Environment, 677. pp. 142-155.
Devloo-Delva, Floriaan, Huerlimann, Roger, Chua, Gladys, Matley, Jordan K., Heupel, Michelle R., Simpfendorfer, Colin A., and Maes, Gregory E. (2019) How does marker choice affect your diet analysis: comparing genetic markers and digestion levels for diet metabarcoding of tropical-reef piscivores. Marine and Freshwater Research, 70 (1). MF17209. pp. 8-18.
Duke, N.C., and Larkum, A.W.D. (2019) Mangroves and seagrasses. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO, Melbourne, VIC, Australia, pp. 219-228.
Dubuc, Alexia, Waltham, Nathan J., Baker, Ronald, Marchand, Cyril, and Sheaves, Marcus (2019) Patterns of fish utilisation in a tropical IndoPacific mangrove-coral seascape, New Caledonia. PLoS ONE, 14 (4). e0207168.
Devlin, Michelle J., Lyons, Brett P., Bacon, John, Edmonds, Nathan, Tracey, Dieter, Al Zaidan, Abdullah S., Al Ajmi, Fahad, Al-Wazzan, Zainab A., Al-Hussain, Mona M., Al Khaled, Hessa, and Le Quesne, Will J.F. (2019) Principles to enable comprehensive national marine ecosystem status assessments from disparate data: the state of the marine environment in Kuwait. Estuarine, Coastal and Shelf Science, 230. 106407.
Dunn, Ryan J.K., Waltham, Nathan J., Huang, Jianyin, Teasdale, Peter R., and King, Brian A. (2019) Protecting water quality in urban estuaries: Australian case studies. In: Wolanski, Eric, Day, John W., Elliott, Michael, and Ramachandran, Ramesh, (eds.) Coasts and Estuaries: the future. Elsevier, Oxford, United Kingdom, pp. 69-86.
Davis, Aaron M., and Neelamraju, Catherine (2019) Quantifying water quality improvements through use of precision herbicide application technologies in a dry-tropical, furrow-irrigated cropping system. Water, 11 (11). 2326.
Duke, Norman C., Field, Colin, Mackenzie, Jock R., Meynecke, Jan-Olaf, and Wood, Apanie L. (2019) Rainfall and its possible hysteresis effect on the proportional cover of tropical tidal wetland mangroves and saltmarsh-saltpans. Marine and Freshwater Research, 70. pp. 1047-1055.
Dujon, Antoine M., Stieglitz, Thomas C., Amice, Erwan, and Webber, D.M. (2019) Snail leaps and bounds: drivers of the diel movement pattern of a large invertebrate, the Caribbean queen conch (Lobatus gigas), in a marginal inshore habitat. Canadian Journal of Zoology, 97 (5). pp. 436-445.
Duffy, J. Emmett, Benedetti-Cecchi, Lisandro, Trinanes, Joaquin, Muller-Karger, Frank E., Ambo-Rappe, Rohani, Boström, Christoffer, Buschmann, Alejandro H., Byrnes, Jarrett, Coles, Robert G., Creed, Joel, Cullen-Unsworth, Leanne C., Diaz-Pulido, Guillermo, Duarte, Carlos M., Edgar, Graham J., Fortes, Miguel, Goni, Gustavo, Hu, Chuanmin, Huang, Xiaoping, Hurd, Catriona L., Johnson, Craig, Konar, Brenda, Krause-Jensen, Dorte, Krumhansl, Kira, Macreadie, Peter, Marsh, Helene, McKenzie, Len J., Mieszkowska, Nova, Miloslavich, Patricia, Montes, Enrique, Nakaoka, Masahiro, Norderhaug, Kjell Magnus, Norlund, Lina M., Orth, Robert J., Prathep, Anchana, Putman, Nathan F., Samper-Villarreal, Jimena, Serrao, Ester A., Short, Frederick, Pinto, Isabel Sousa, Steinberg, Peter, Stuart-smith, Rick, Unsworth, Richard K.F., van Keulen, Mike, van Tussenbroek, Brigitta I., Wang, Mengqiu, Waycott, Michelle, Weatherdon, Lauren V., Wernberg, Thomas, and Yaakub, Siti Maryam (2019) Toward a coordinated global observing system for seagrasses and marine macroalgae. Frontiers in Marine Science, 6. 317. pp. 1-26.
Dale, Pat, Sporne, Ilva, Knight, Jon, Sheaves, Marcus, Eslami-Andergoli, Leila, and Dwyer, Patrick (2019) A conceptual model to improve links between science, policy and practice in coastal management. Marine Policy, 103. pp. 42-49.
Dale, Allan P., Vella, Karen, Gooch, Margaret, Potts, Ruth, Pressey, Robert L., Brodie, Jon, and Eberhard, Rachel (2018) Avoiding implementation failure in catchment landscapes: a case study in governance of the Great Barrier Reef. Environmental Management, 62. pp. 70-81.
Davis, Aaron M., Pusey, Brad J., and Pearson, Richard G. (2018) Big floods, big knowledge gap: food web dynamics in a variable river system. Ecology of Freshwater Fish, 27 (4). pp. 898-909.
Duke, N.C., and Kudo, H. (2018) Bruguiera × dungarra, a new hybrid between mangrove species B. exaristata and B. gymnorhiza (Rhizophoraceae) recently discovered in north-east Australia. Blumea, 63. pp. 279-285.
Duke, Norman C., and Mackenzie, Jock (2018) ECY Report 2017. Final report: East Cape York shoreline environmental surveys. External Commissioned Report. James Cook University, Townsville, QLD, Australia.
Davey, P.A., and Rasheed, M.A. (2018) Port of Abbot Point Long-Term Seagrass Monitoring Program - 2017: A Report for North Queensland Bulk Ports Corporation. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Daly, Ryan, Smale, Malcolm J., Singh, Sarika, Anders, Darrell, Shivji, Mahmood, Daly, Clare A.K., Lea, James S.E., Sousa, Lara L., Wetherbee, Bradley M., Fitzpatrick, Richard, Clarke, Christopher R., Sheaves, Marcus, and Barnett, Adam (2018) Refuges and risks: evaluating the benefits of an expanded MPA network for mobile apex predators. Diversity and Distributions, 24 (9). pp. 1217-1230.
Death, Russell, Canning, Adam, Magierowski, Regina, and Tonkin, Jonathan (2018) Why aren't we managing water quality to protect ecological health? In: [Presented at the 31st Annual FLRC Workshop]. From: 31st Annual FLRC Workshop, 7-9 February 2018, Auckland, New Zealand.
Datry, T., Foulquier, A., Corti, R., von Schiller, D., Tockner, K., Mendoza-Lera, C., Clement, J.C., Gessner, M.O., Moleon, M., Stubbington, R., Gucker, B., Albarino, R., Allen, D.C., Altermatt, F., Arce, M.I., Arnon, S., Banas, D., Banegas-Medina, A., Beller, E., Blanchette, M.L., Blanco-Libreros, J.F., Blessing, J.J., Boechat, I.G., Boersma, K.S., Bogan, M.T., Bonada, N., Bond, N.R., Brintrup Barria, K.C., Bruder, A., Burrows, R.M., Cancellario, T., Canhoto, C., Carlson, S.M., Cauvy-Fraunie, S., Cid, N., Danger, M., de Freitas Terra, Bianca, De Girolamo, A.M., de La Barra, Evans, del Campo, R., Diaz-Villanueva, V.D., Dyer, F., Elosegi, A., Faye, E., Febria, C., Four, B., Gafny, S., Ghate, S.D., Gomez, R., Gomez-Gener, L., Graça, M.A.S., Guareschi, S., Hoppeler, F., Hwan, J.L., Kubheka, S., Laini, A., Langhans, S.D., Leigh, C., Little, C.J., Lorenz, S., Marshall, J.C., Martin, E., McIntosh, A.R., Meyer, E.I., Milisa, M., Mlambo, M.C., Morais, M., Moya, N., Negus, P.M., Niyogi, D.K., Papatheodoulou, A., Pardo, I., Paril, P., Pauls, S.U., Pesic, V., Polasek, M., Robinson, C.T., Rodriguez-Lozano, P., Rolls, R.J., Sanchez-Montoya, M.M., Savic, A., Shumilova, O., Shridhar, K.R., Steward, A.L., Storey, R., Taleb, A., Uzan, A., Vander Vorste, Ross, Waltham, Nathan, Woelfle-Erskine, C., Zak, D., Zarfl, C., and Zoppini, A. (2018) A global analysis of terrestrial plant litter dynamics in non-perennial waterways. Nature Geoscience, 11. pp. 497-503.
Davey, Peter A., Pernice, Mathieu, Ashworth, Justin, Kuzhiumparambil, Unnikrishnan, Szabó, Milán, Dolferus, Rudy, and Ralph, Peter J. (2018) A new mechanistic understanding of light-limitation in the seagrass Zostera muelleri. Marine Environmental Research, 134. pp. 55-67.
Dunbar, Kimberley, Baker, Ronnie, and Sheaves, Marcus (2017) Effects of forest width on fish use of fringing mangroves in a highly urbanised tropical estuary. Marine and Freshwater Research, 68 (9). pp. 1764-1770.
Duke, Norman (2017) Climate calamity along Australia's gulf coast. Landscape Architecture Australia, 153. pp. 66-71.
Dubuc, Alexia, Waltham, Nathan, Malerba, Martino, and Sheaves, Marcus (2017) Extreme dissolved oxygen variability in urbanised tropical wetlands: the need for detailed monitoring to protect nursery ground values. Estuarine, Coastal and Shelf Science, 198 (Part A). pp. 163-171.
Duke, Norman C., Kovacs, John M., Griffiths, Anthony D., Preece, Luke, Hill, Duncan J. E., Van Oosterzee, Penny, Mackenzie, Jock, Morning, Hailey S., and Burrows, Damien (2017) Large-scale dieback of mangroves in Australia’s Gulf of Carpentaria: a severe ecosystem response, coincidental with an unusually extreme weather event. Marine and Freshwater Research, 68 (10). MF16322. pp. 1816-1829.
Duke, Norman (2017) Love at low tide: why mangroves deserve our admiration. Wildlife Australia, 54 (3). pp. 29-33.
Duke, Norman C. (2017) Mangrove floristics and biogeography revisited: further deductions from biodiversity hot spots, ancestral discontinuities and common evolutionary processes. In: Rivera-Monroy, Victor H., Lee, Shing Yip, Kristensen, Erik, and Twilley, Robert R., (eds.) Mangrove Ecosystems: A Global Biogeographic Perspective - Structure, Function and Services. Springer International Publishing, Cham, Switzerland, pp. 17-53.
Dunn, Ryan J.K., Waltham, Nathan, Teasdale, Peter R., Roberston, David, and Welsh, David T. (2017) Short-term nitrogen and phosphorus release during the disturbance of surface sediments: a case study in an urbanised estuarine system (Gold Coast Broadwater, Australia). Journal of Marine Science and Engineering, 5 (2). pp. 1-13.
Delandmeter, Philippe, Lambrechts, Jonathan, Marmorino, George O., Legat, Vincent, Wolanski, Eric, Remacle, Jean-François, Chen, Wei, and Deleersnijder, Eric (2017) Submesoscale tidal eddies in the wake of coral islands and reefs: satellite data and numerical modelling. Ocean Dynamics, 67 (7). pp. 897-913.
Davis, Aaron M., and Betancur, Ricardo (2017) Widespread ecomorphological convergence in multiple fish families spanning the marine-freshwater interface. Proceedings of the Royal Society of London Series B, Biological Sciences, 284 (1854). 20170565.
Duke, Norman C. (2016) Oil spill impacts on mangroves: recommendations for operational planning and action based on a global review. Marine Pollution Bulletin, 109 (2). pp. 700-715.
Dichmont, Catherine M., Dutra, Leo X.C., Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Deng, Roy A., van Putten, Elizabeth I., Pascual, Ricardo, Dambacher, Jeffrey M., Warne, Michael St.J., Quinn, Ross H., Thébaud, Olivier, Bennett, John, Read, Mark, Wachenfeld, David, Davies, Julia, Garland, Anna, Dunning, Malcolm, Collier, Catherine, Waycott, Michelle, and Playford, Julia (2016) A generic method of engagement to elicit regional coastal management options. Ocean & Coastal Management, 124. pp. 22-32.
Davis, Aaron M., Tink, Michelle, Rohde, Ken, and Brodie, Jon E. (2016) Urea contributions to dissolved 'organic' nitrogen losses from intensive, fertilised agriculture. Agriculture, Ecosystems and Environment, 223. pp. 190-196.
Davis, Aaron M., and Moore, Alex R. (2016) Conservation potential of artificial water bodies for fish communities on a heavily modified agricultural floodplain. Aquatic Conservation: marine and freshwater ecosystems , 26 (6). pp. 1184-1196.
Davis, Aaron M., Unmack, Peterj., Vari, Richard P., and Betancur-R, Ricardo (2016) Herbivory promotes dental disparification and macroevolutionary dynamics in grunters (Teleostei: Terapontidae), a freshwater adaptive radiation. American Naturalist, 187 (3). pp. 320-333.
Dutra, Leo X.C., Dichmont, Catherine M., van Putten, Ingrid E., Thébaud, Oliver, Deng, Roy A., Pascual, Ricardo, Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Warne, M.St.J., Quinn, R., Bennett, J., Read, M., Wachenfeld, D., Collier, Catherine, Waycott, Michelle, Davies, J., Garland, A., Dunning, M., and Playford, J. (2016) How important is the coast? A survey of coastal objectives in an Australian regional city. Marine Policy, 71. pp. 229-241.
Dale, Allan, Vella, Karen, Pressey, Robert L., Brodie, Jon, Gooch, Margaret, Potts, Ruth, and Eberhard, Rachel (2016) Monitoring and adaptively reducing system-wide governance risks facing the GBR: final report. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.
Davies, Jaclyn, and Rasheed, Michael (2016) Port of Townsville Annual Seagrass Monitoring: September 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Davis, Aaron M., and Pradolin, Jordan (2016) Precision herbicide application technologies to decrease herbicide losses in furrow irrigation outflows in a northeastern Australian cropping system. Journal of Agricultural and Food Chemistry, 64 (20). pp. 4021-4028.
Davis, Aaron M., Pearson, Richard G., Brodie, Jon E., and Butler, Barry (2016) Review and conceptual models of agricultural impacts and water quality in waterways of the Great Barrier Reef catchment area. Marine and Freshwater Research, 68 (1). pp. 1-19.
Dale, Allan P., Vella, Karen, Pressey, Robert L., Brodie, Jon, Gooch, Margaret, Potts, Ruth, and Eberhard, Rachel (2016) Risk analysis of the governance system affecting outcomes in the Great Barrier Reef. Journal of Environmental Management, 183 (Part 3). pp. 712-721.
Davies, J.D., Bryant, C.V., Carter, A.B., and Rasheed, M.A. (2016) Seagrasses in Port Curtis and Rodds Bay 2015: annual long-term monitoring. Report. James Cook University, Cairns, QLD, Australia.
Davies, Claire H., Coughlan, Alex, Hallegraeff, Gustaaf, Ajani, Penelope, Armbrecht, Linda, Atkins, Natalia, Bonham, Prudence, Brett, Steve, Brinkman, Richard, Burford, Michele, Clementson, Lesley, Coad, Peter, Coman, Frank, Davies, Diana, Dela-Cruz, Jocelyn, Devlin, Michelle, Edgar, Steven, Eriksen, Ruth, Furnas, Miles, Hassler, Christel, Hill, David, Holmes, Michael, Ingleton, Tim, Jameson, Ian, Leterme, Sophie C., Lønborg, Christian, McLaughlin, James, McEnnulty, Felicity, Mckinnon, A. David, Miller, Margaret, Murray, Shauna, Nayar, Sasi, Patten, Renee, Pritchard, Tim, Proctor, Roger, Purcell-Meyerink, Diane, Raes, Eric, Rissik, David, Ruszczyk, Jason, Slotwinski, Anita, Swadling, Kerrie M., Tattersall, Katherine, Thompson, Peter, Thomson, Paul, Tonks, Mark, Trull, Thomas W., Uribe-Palomino, Julian, Waite, Anya M., Yauwenas, Rouna, Zammit, Anthony, and Richardson, Anthony J. (2016) A database of marine phytoplankton abundance, biomass and species composition in Australian waters. Scientific Data, 3. 160043. pp. 1-12.
Devlin, M.J., Massoud, M.S., Hamid, S.A., Al-Zaidan, A., Al-Sarawi, H., Al-Enezi, M., Al-Ghofran, L., Smith, A.J., Barry, J., Stentiford, G.D., Morris, S., da Silva, E.T., and Lyons, B.P. (2015) Changes in the water quality conditions of Kuwait's marine waters: long term impacts of nutrient enrichment. Marine Pollution Bulletin, 100 (2). pp. 607-620.
Devlin, Michelle J., Petus, Caroline, Da Silva, Eduardo, Tracey, Dieter, Wolff, Nicholas H., Waterhouse, Jane, and Brodie, Jon (2015) Water quality and river plume monitoring in the Great Barrier Reef: an overview of methods based on ocean colour satellite data. Remote Sensing, 7 (10). pp. 12909-12941.
Davies, Jaclyn, Scott, Emma, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Duplication BPAR Monitoring: May - August 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Dafforn, Katherine A., Mayer-Pinto, Mariana, Morris, Rebecca L., and Waltham, Nathan J. (2015) Application of management tools to integrate ecological principles with the design of marine infrastructure. Journal of Environmental Management, 158. pp. 61-73.
Duke, Norman C., Mackenzie, Jock, Wood, Apanie, and Burrows, Damien (2015) New partnership network helps to protect Australian mangroves and saltmarsh. Wetlands Australia, National Wetlands Update (27). pp. 48-50.
Devillers, Rodolphe, Pressey, Robert L., Grech, Alana, Kittinger, John N., Edgar, Graham J., Ward, Trevor, and Watson, Reg (2015) Reinventing residual reserves in the sea: are we favouring ease of establishment over need for protection? Aquatic Conservation: marine and freshwater ecosystems , 25 (4). pp. 480-504.
Davies, Jaclyn, Taylor, Helen, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Dupliaction BPAR Monitoring February/ March - May 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Devlin, Michelle J., Petus, Caroline, Da Silva, Eduardo, Tracey, Dieter, Wolff, Nicholas, Brodie, Jon, Waterhouse, Jane, and Martin, Katherine (2015) Improvements to water quality monitoring through the inclusion of ocean colour products correlated with in-situ water quality gradients for the Great Barrier Reef. In: Posters from the International Ocean Colour Science meeting. From: IOCS 2015: Second International Ocean Colour Science Meeting, 15-18 June 2015, San Fransisco, CA, USA.
Davies, Jaclyn, Scott, Emma, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Duplication BPAR Monitoring: November 2014 - March 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Davies, Jaclyn, Tol, Samantha, and Rasheed, Michael (2015) Port of Townsville annual monitoring and baseline survey: October 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Duke, Norman C., and Schmitt, Klaus (2015) Mangroves: unusual forests at the seas edge. In: Pancel, Laslo, and Köhl, Michael, (eds.) Tropical Forestry Handbook. Springer, Berlin, Germany, pp. 1-24.
Dao, Hoc Tan, Smith-Keune, Carolyn, Wolanski, Eric, Jones, Clive M., and Jerry, Dean R. (2015) Oceanographic currents and local ecological knowledge indicate, and genetics does not refute, a contemporary pattern of larval dispersal for the ornate spiny lobster, Panulirus ornatus in the south-east Asian archipelago. PLoS ONE, 10 (5). e0124568. pp. 1-19.
Davis, Aaron M., Pearson, Richard G., Kneipp, Ian J., Benson, Lee J., and Fernandes, Leanne (2015) Spatiotemporal variability and environmental determinants of invertebrate assemblage structure in an Australian dry-tropical river. Freshwater Science, 34 (2). pp. 634-647.
Devlin, Michelle, Fabricius, Katharina, Negri, Andrew, Brodie, Jon, Waterhouse, Jane, Uthicke, Sven, Collier, Catherine, Pressey, Bob, Augé, Amélie, Reid, Ben, Woodberry, Owen, Zhao, Jian-xin, Clarke, Tara, Pandolfi, John, and Bennett, John (2015) Water quality synthesis of NERP tropical ecosystems hub GBR water quality research outputs 2011-2014. Report. Reef and Rainforest Research Centre, Cairns, Australia.
Devlin, Michelle, Le Quesne, Will J.F., and Lyons, Brett P. (2015) The marine environment of Kuwait—emerging issues in a rapidly changing environment. Marine Pollution Bulletin, 100 (2). pp. 593-596.
Delandmeter, Philippe, Lewis, Stephen E., Lambrechts, Jonathan, Deleersnijder, Eric, Legat, Vincent, and Wolanski, Eric (2015) The transport and fate of riverine fine sediment exported to a semi-open system. Estuarine, Coastal and Shelf Science , 167 (Part B). pp. 336-346.
Davis, A.M., Lewis, S.E., Brodie, J.E., and Benson, Ash (2014) The potential benefits of herbicide regulation: a cautionary note for the Great Barrier Reef catchment area. Science of the Total Environment, 490. pp. 81-92.
DeBose, Jennifer L., and Paul, Valerie J. (2014) Chemical signatures of multi-species foraging aggregations are attractive to fish. Marine Ecology Progress Series, 498. pp. 243-248.
Davies, J.N., McKenna, S.A., Jarvis, J.C., Carter, A.B., and Rasheed, M.A. (2014) Port of Townsville annual monitoring and baseline survey: October 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Dichmont, Catherine M., Dutra, Leo X.C., van Putten, Ingrid, Deng, Roy, Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Pascual, Richardo, Warne, Michael, Quinn, Ross, Thébaud, Olivier, Bennett, John, Read, Mark, Wachenfeld, David, Davies, Julia, Garland, Anna, Dunning, Malcolm, Waycott, Michelle, Collier, Catherine, Dambacher, Jeffrey M., Playford, Julia, Harm, Rachel, Gribble, Neil, and Pitcher, Roland (2014) Design and implementation of management strategy evaluation for the Great Barrier Reef inshore (MSE-GBR). Report. Reef and Rainforest Research Centre, Cairns, Australia.
Davis, Aaron M., Unmack, Peter J., Pusey, Bradley J., Pearson, Richard G., and Morgan, David L. (2014) Evidence for a multi-peak adaptive landscape in the evolution of trophic morphology in terapontid fishes. Biological Journal of the Linnean Society, 113 (2). pp. 623-634.
Dunn, Ryan J.K., Waltham, Nathan J., Benfer, Nathan P., King, Brian A., Lemckert, Charles J., and Zigic, Sasha (2014) Gold Coast Broadwater: southern Moreton Bay, Southeast Queensland (Australia). In: Wolanski, Eric, (ed.) Estuaries of Australia in 2050 and Beyond. Estuaries of the World . Springer, Dordrecht, The Netherlands, pp. 93-110.
Duke, Norman (2014) Mangrove coast. In: Harff, Jan, Meschede, Martin, Petersen, Sven, and Thiede, Jörn, (eds.) Encyclopedia of Marine Geosciences. Encyclopedia of Earth Sciences Series . Springer, The Netherlands, pp. 412-422.
Davis, Aaron M., Lewis, Stephen E., O'Brien, Dominique S., Bainbridge, Zoë T., Bentley, Christie, Mueller, Jochen F., and Brodie, Jon E. (2014) Water resource development and high value coastal wetlands on the lower Burdekin floodplain, Australia. In: Wolanski, Eric, (ed.) Estuaries of Australia in 2050 and Beyond. Estuaries of the World . Springer, Dordrecht, The Netherlands, pp. 223-246.
Duke, Norman, Nagelkerken, Ivan, Agardy, Tundi, Wells, Sue, and Van Lavieren, Hanneke (2014) The importance of mangroves to people: a call to action. Report. United Nations Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK.
Davis, A.M., Thorburn, P.J., Lewis, S.E., Bainbridge, Z.T., Attard, S.J., Milla, R., and Brodie, J.E. (2013) Environmental impacts of irrigated sugarcane production: Herbicide run-off dynamics from farms and associated drainage systems. Agriculture, Ecosystems and Environment, 180. pp. 123-135.
Devlin, Michelle J., da Silva, Eduardo Teixeira, Petus, Caroline, Wenger, Amelia, Zeh, Daniel, Tracey, Dieter, Álvarez-Romero, Jorge G., and Brodie, Jon (2013) Combining in-situ water quality and remotely sensed data across spatial and temporal scales to measure variability in wet season chlorophyll-a: Great Barrier Reef lagoon (Queensland, Australia). Ecological Processes, 2. 31. pp. 1-22.
Davies, Jaclyn, McCormack, Catherine, McKenna, Skye, Taylor, Helen, and Rasheed, Michael (2013) Productive capacities of tropical seagrasses communities at three locations along the East Coast of Queensland and their potential for carbon sequestration. In: 50th Australian Marine Sciences Association annual conference: shaping the future: abstracts. p. 108. From: AMSA 2013 Shaping the Future: 50th Annual Conference of the Australian Marine Sciences Association, 1-7 July 2013, Gold Coast, Queensland.
Davies, J.D., McCormack, C.V., and Rasheed, M.A. (2013) Port Curtis and Rodds Bay Seagrass Monitoring Program. Biannual western basin & annual long term monitoring November 2012. Report. TropWATER, James Cook University, Cairns.
DeBose, J.L., Nuttall, M.F., Hickerson, E.L., and Schmahl, G.P. (2013) A high-latitude coral community with an uncertain future: Stetson Bank, northwestern Gulf of Mexico. Coral Reefs, 32 (1). pp. 225-267.
Davis, Aaron M., Unmack, Peter. J., Pusey, Bradley J., Pearson, Richard G., and Morgan, David L. (2013) Ontogenetic development of intestinal length and relationships to diet in an Australasian fish family (Terapontidae). BMC Evolutionary Biology, 13. 53. pp. 1-16.
Donaldson, James A., Ebner, Brendan C., and Fulton, Christopher J. (2013) Flow velocity underpins microhabitat selection by gobies of the Australian Wet Tropics. Freshwater Biology, 58 (5). pp. 1038-1051.
Devlin, Michelle, Petus, Caroline, da Silva, Eduardo Teixera, Alvarez-Romero, Jorge, Zeh, Daniel, Waterhouse, Jane, and Brodie, Jon (2013) Mapping of exposure to flood plumes, water types and exposure to pollutants (DIN, TSS) in the Great Barrier Reef: toward the production of operational risk maps for the world's most iconic marine ecosystem. Report Section. James Cook University, Townsville, QLD.
Dale, Allan, Vella, Karen, Pressey, Robert L., Brodie, Jon, Yorkston, Hugh, and Potts, Ruth (2013) A method for risk analysis across governance systems: a Great Barrier Reef case study. Environmental Research Letters, 8 (1). 015037. pp. 1-16.
Duke, Norm (2012) Mangroves of South-East Australia. In: Sainty, Geoff, Hosking, John, Carr, Geoff, and Adam, Paul, (eds.) Estuary plants and what's happening to them in south-east Australia. Sainty and Associates, Potts Point, Sydney, pp. 132-139.
Davis, A.M., Unmack, P.J., Pusey, B.J., Johnson, J.B., and Pearson, R.G. (2012) Marine-freshwater transitions are associated with the evolution of dietary diversification in terapontid grunters (Teleostei: Terapontidae). Journal of Evolutionary Biology, 25 (6). pp. 1163-1179.
Davis, Aaron M., Pusey, Bradley J., and Pearson, Richard G. (2012) Contrasting intraspecific dietary shifts in two terapontid assemblages from Australia's wet-dry tropics. Ecology of Freshwater Fish, 21 (1). pp. 42-56.
Davis, Aaron M., Lewis, Stephen E., Bainbridge, Zoë T., Glendenning, Lionel, Turner, Ryan D.R., and Brodie, Jon E. (2012) Dynamics of herbicide transport and partitioning under event flow conditions in the lower Burdekin region, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 182-193.
Devlin, Michelle, Wenger, Amelia, Da Silva, Eduardo, Alvarez Romero, Jorge G., Waterhouse, Jane, and McKenzie, Len (2012) Extreme weather conditions in the Great Barrier Reef: drivers of change? In: Proceedings of the 12th International Coral Reef Symposium. 21A_1. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.
Davis, Aaron M., Blanchette, Melanie L., Pusey, Bradley J., Jardine, Tim D., and Pearson, Richard G. (2012) Gut content and stable isotope analyses provide complementary understanding of ontogenetic dietary shifts and trophic relationships among fishes in a tropical river. Freshwater Biology, 57 (10). pp. 2156-2172.
Doshi, Amar, Pascoe, Sean, Thébaud, Olivier, Thomas, Colette R., Setiasih, Naneng, Hong, James Tan Chun, True, James, Schuttenberg, Heidi Z., and Heron, Scott F. (2012) Loss of economic value from coral bleaching in S.E. Asia. In: Proceedings of the 12th International Coral Reef Symposium. 22D_1. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.
Devlin, M.J., McKinna, L.W., Alvarez-Romero, J.G., Petus, C., Abott, B., Harkness, P., and Brodie, J. (2012) Mapping the pollutants in surface riverine flood plume waters in the Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 224-235.
Devlin, Michelle, Wenger, Amelia, Waterhouse, Jane, Alvarez-Romero, Jorge, Abbott, Brett, and da Silva, Eduardo Teixeira (2012) Reef Rescue Marine Monitoring Program: flood plume monitoring annual report 2010-11: incorporating results from the Extreme Weather Response Program flood plume monitoring. Report. James Cook University, Townsville, QLD, Australia.
Devlin, Michelle, Wenger, Amelia, Petus, Caroline, da Silva, Eduardo Teixeira, Debose, Jennifer, and Álvarez-Romero, Jorge (2012) Reef Rescue Monitoring Program: final report of JCU activities 2011/12: flood plumes and extreme weather monitoring for the Great Barrier Reef Marine Park Authority. Report. James Cook University, Townsville, QLD, Australia.
Davis, Aaron M., Pusey, Bradley, and Pearson, Richard G. (2012) Trophic ecology of terapontid fishes (Pisces: Terapontidae): the role of morphology and ontogeny. Marine and Freshwater Research, 63 (2). pp. 128-141.
Devlin, Michelle, and Lewis, Stephen (2011) Advancing Our Understanding of the Source, Transport and Impacts of Pesticides on the Great Barrier Reef and in Associated Ecosystems: a review of MTSRF research outputs, 2006-2010. Report. Reef and Rainforest Research Centre, Cairns, QLD.
Devlin, Michelle, Bricker, Suzanne, and Painting, Suzanne (2011) Comparison of five methods for assessing impacts of nutrient enrichment using estuarine case studies. Biogeochemistry, 106 (2). pp. 177-205.
Devlin, Michelle (2011) Flooding in NE Australia: how ongoing monitoring of flood plumes helps in managing the Great Barrier Reef. Marine Ecosystems and Management, 4 (4). p. 7.
Davis, A.M., Pearson, R.G., Pusey, B.J., Perna, C., Morgan, D.L., and Burrows, D. (2011) Trophic ecology of northern Australia's terapontids: ontogenetic dietary shifts and feeding classification. Journal of Fish Biology, 78 (1). pp. 265-286.
Dowe, John L., and Jones, David L. (2011) Arecaceae. In: Wilson, Annette, (ed.) Flora of Australia. Flora of Australia Series, 39 . Australian Biological Resources Study/CSIRO, Melbourne, VIC, Australia, pp. 145-210.
Douglas, Michael, Jackson, Sue, Setterfield, Samantha, Pusey, Brad, Davies, Peter, Kennard, Mark, Burrows, Damien, and Bunn, Stuart (2011) Northern futures: threats and opportunities for freshwater ecosystems. In: Pusey, B.J., (ed.) Aquatic Biodiversity in Northern Australia: Patterns, Threats and Future. CDU Press, Darwin, NT, pp. 203-220.
Davis, A.M., and Pusey, B.J. (2010) Trophic polymorphism and water clarity in northern Australian Scortum (Pisces: Terapontidae). Ecology of Freshwater Fish, 19 (4). pp. 638-643.
Doupe, R.G., and Knott, M.J. (2010) Rapid digestion of fish prey by the highly invasive ‘detritivore’ Oreochromis mossambicus. Journal of Fish Biology, 76 (4). pp. 1019-1024.
Davis, A.M., Pusey, B.J., Thorburn, D.C ., Dowe, J.L., Morgan, D.L., and Burrows, D. (2010) Riparian contributions to the diet of terapontid grunters (Pisces: Terapontidae) in wet–dry tropical rivers. Journal of Fish Biology, 76 (4). pp. 862-879.
Doupe, Robert G., Mitchell, Jim, Knott, Matthew J., Davis, Aaron M., and Lymbery, Alan J. (2010) Efficacy of exclusion fencing to protect ephemeral floodplain lagoon habitats from feral pigs (Sus scrofa). Wetlands Ecology and Management, 18 (1). pp. 69-78.
Doupe, Robert G., Knott, Matthew J., Schaffer, Jason, Burrows, Damien W., and Lymbery, Alan J. (2010) Experimental herbivory of native Australian macrophytes by the introduced Mozambique tilapia Oreochromis mossambicus. Austral Ecology, 35 (1). pp. 24-30.
Dowe, John (2010) Australian Palms: Biogeography, Ecology and Systematics. CSIRO Publishing, Collingwood, Victoria, Australia.
Devlin, Michelle, Barry, Jon, Painting, Suzanne, and Best, Mike (2009) Extending the phytoplankton tool kit for the UK Water Framework Directive: indicators of phytoplankton community structure. Hydrobiologia, 633 (1). pp. 151-168.
Doupé, Robert G., Schaffer, Jason, Knott, Matthew J., and Burrows, Damien W. (2009) How might an exotic fish disrupt spawning success in a sympatric native species? Marine and Freshwater Research, 60 (5). pp. 379-383.
Devlin, M.J., Barry, J., Mills, D.K., Gowen, R.J., Foden, J., Sivyer, D., Greenwood, N., Pearce, D., and Tett, P. (2009) Estimating the diffuse attenuation coefficient from optically active constituents in UK marine waters. Estuarine, Coastal and Shelf Science , 82 (1). pp. 73-83.
Dowe, John Leslie (2009) A preliminary note on the impact of Cyclone Larry on populations of Archontophoenix alexandrae (Arecaceae), north Queensland, Australia. Palms & Cycads, 102. pp. 4-8.
Dowe, John Leslie (2009) Archontophoenix (Arecaceae) description of species and notes. The Palm Journal, 192. pp. 4-11.
Davis, Aaron M., and Perna, Colton (2009) Evidence for predation on terrestrial Cane Toads Bufo marinus by the Sooty Grunter Hephaestus fuliginosus in northern Australia. Northern Territory Naturalist, 21. pp. 45-48.
Doupé, R.G., Knott, M.J., Schaffer, J., and Burrows, D.W. (2009) Investigational piscivory of some juvenile Australian freshwater fishes by the introduced Mozambique tilapia Oreochromis mossambicus. Journal of Fish Biology, 74 (10). pp. 2386-2400.
Devlin, Michelle, and Schaffelke, Britta (2009) Spatial extent of riverine flood plumes and exposure of marine ecosystems in the Tully coastal region, Great Barrier Reef. Marine and Freshwater Research, 60 (11). pp. 1109-1122.
Doupe, Robert G., Schaffer, Jason, Knott, Matthew J., and Dicky, Paul W. (2009) A description of freshwater turtle habitat destruction by feral pigs in tropical north eastern Australia. Herpetological Conservation and Biology, 4 (3). pp. 331-339.
Dowe, J.L. (2009) A taxonomic account of Livistona R.Br. (Arecaceae). Garden's Bulletin Singapore, 60 (2). pp. 185-344.
Doupè, Robert G., Schaffer, Jason, and Knott, Matthew J. (2008) An Example of Freshwater Turtle Habitat Destruction by Foraging Feral Pigs in Tropical North-Eastern Australia. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.
Devlin, M.J., Barry, J., Mills, D.K., Gowen, R.J., Foden, J., Sivyer, D., and Tett, P. (2008) Relationships between suspended particulate material, light attenuation and Secchi depth in UK marine waters. Estuarine, Coastal and Shelf Science , 79 (3). pp. 429-439.
Dowe, John Leslie (2008) Botanical Inventory of the Mungalla Coastal Habitats. Report. James Cook University, Townsville, QLD, Australia.
Davis, Aaron, Lewis, Stephen, Bainbridge, Zoe, Brodie, Jon, and Shannon , Evan (2008) Pesticide residues in waterways of the lower Burdekin region: challenges in ecotoxicological interpretation of monitoring data. Australasian Journal of Ecotoxicology, 14. pp. 89-108.
Dowe, John Leslie, and Broughton, Alan D. (2008) F.M. Bailey's taxonomy of A. Meston's collections from the Bellenden Ker Expedition of 1904. Austrobaileya, 7. pp. 675-677.
Duke, N.C., and Larkum, A.W.D. (2008) Mangroves and seagrasses. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: Biology, Environment and Management. CSIRO Publishing, Collingwood, VIC, pp. 156-170.
Doupe, Robert G., and Burrows, Damien W. (2008) Thirty years later, should we be more concerned for the ongoing invasion of Mozambique Tilapia in Australia? Pacific Conservation Biology, 14 (4). pp. 235-238.
Dowe, John Leslie, and Broughton, Alan D. (2007) F.M. Bailey's ascent of Mt Bellenden-Ker in 1889, and notes on the publication priority of new vascular plant species from the expedition. Austrobaileya, 7 (3). pp. 555-566.
Davis, Aaron (2007) Overview of research and environmental issues relevant to development of recommended farming practices for sugar cane farming in the Lower Burdekin region. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.
Dowe, John Leslie (2007) Ptychosperma macarthurii: discovery, horticulture and taxonomy. Palms, 51 (2). pp. 85-96.
Dixon, Ian, Douglas, Michael, Dowe, John, and Burrows, Damien (2006) Tropical rapid appraisal of riparian condition Version 1 (for use in tropical savannas). Report. Land and Water Australia, Canberra, Australia.
Duke, Norman (2006) Australia's Mangroves: an authoritative guide to Australia’s mangrove plants. University of Queensland and Norman C. Duke, Brisbane, QLD, Australia.
Dowe, John Leslie, and Chapin, Melany H. (2006) Beccari's "Grande Nouveauté": the discovery, taxonomic history and typification of Pelagodoxa henryana. Palms, 50 (4). pp. 185-192.
Dowe, John Leslie (2005) Observations of palms made by the botanist and explorer Ludwig Leichhardt, during the Australian Overland Expedition of 1844-1845. Palms, 49 (4). pp. 167-182.
Dixon, Ian, Douglas, Michael, Dowe, John, Burrows, Damien, and Townsend, Simon (2005) A rapid method for assessing the condition of riparian zones in the wet/dry tropics of northern Australia. In: Proceedings of the 4th Australian Stream Management Conference. pp. 173-178. From: The 4th Australian Stream Management Conference, 19-22 October 2004, Launceston, TAS, Australia.
Dowe, John Leslie (2005) Ludwig Leichhardt's Australian plant collections, 1842-1847. Austrobaileya, 7 (1). pp. 151-163.
Devlin, M.J., and Brodie, J. (2005) Terrestrial discharge into the Great Barrier Reef Lagoon: nutrient behavior in coastal waters. Marine Pollution Bulletin, 51 (1). pp. 9-22.
Dowe, John L., and Mogea, Johanis P. (2004) New species of Livistona (Arecaceae) from New Guinea. Palms, 48 (4). pp. 197-203.
Dowe, John Leslie (2004) Taxonomic notes on palms (Arecaceae) in catalogues of the Brisbane Botanic Garden, Australia, of 1875 and 1885. Austrobaileya, 6 (4). pp. 967-972.
Devlin, Michelle, Brodie, Jon, Waterhouse, Jane, Mitchell, Alan , Audas, Donna, and Haynes, David (2003) Exposure of Great Barrier Reef inner-shelf reefs to river-borne contaminants. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.
Doupé, R.G., and Pettit, N.E. (2002) Ecological perspectives on regulation and water allocation for the Ord River, Western Australia. River Research and Applications: an international journal devoted to river research and management, 18 (3). pp. 307-320.
Dowe, John L., and Barfod, Anders S. (2001) New species of Livistona R. Br. (Arecaceae) from north Queensland and Papua New Guinea. Austrobaileya, 6 (1). pp. 165-174.
Devlin, Michelle, Waterhouse, Jane, Taylor, Jeremy, and Brodie, Jon (2001) Flood plumes in the Great Barrier Reef : spatial and temporal patterns in composition and distribution. Report. Great Barrier Reef Marine Park Authority, Townsville, Australia.
Duke, Norman (2001) Mangrove phenologies and the factors influencing them in the Australasian region. In: De Lacerda, Luiz-Drude, (ed.) Mangrove Ecosystems: Function and Management. Environmental Science . Springer-Verlag, Berlin, Germany, pp. 217-233.
Duke, Norman, and Wolanski, Eric (2001) Muddy coastal waters and depleted mangrove coastlines - depleted seagrass and coral reefs. In: Wolanski, Eric, (ed.) Oceanographic Processes of Coral Reefs: physical and biology links in the Great Barrier Reef. CRC Press, Washington, DC, USA, pp. 77-91.
Dixon, Dale (2000) Flora and fauna survey of the vegetation and faunal habitats adjacent to the Mackay-Bucasia Road. Report. James Cook University, Townsville, QLD, Australia.
Duke, Norman (1997) Mangroves in the Great Barrier Reef World Heritage Area: current status, long-term trends, management implications and research. In: Wachenfeld, David, Oliver, Jamie, and Davis, Kim, (eds.) State of the Great Barrier Reef World Heritage Area Workshop. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia, pp. 288-299.
Duke, Norman (1996) Mangrove reforestation in Panama: an evaluation of planting in areas deforested by a large oil spill. In: Field, Colin D., (ed.) Restoration of mangrove ecosystems. International Society for Mangrove Ecosystems ISME & International Tropical Timber Organization ITTO, Okinawa, Japan, pp. 209-232.
Duke, N.C. (1990) Phenological trends with latitude in the mangrove tree Avicennia marina. Journal of Ecology, 78 (1). pp. 113-133.
Duke, N.C., and Bunt, J.S. (1979) The genus Rhizophora (Rhizophoraceae) in north-eastern Australia. Australian Journal of Botany, 27 (5). pp. 657-678.
Devlin, Michelle (2005) Spatial and temporal patterns of flood plumes in the Great Barrier Reef, Australia. PhD thesis, James Cook University.
E
Ebner, Brendan C., Maeda, Ken, Donaldson, James A., Harasti, David, Lord, Clara, Hay, Vincent, Heffernan, Jason, Starrs, Danswell, Thuesen, Paul, Beatty, Stephen, Boseto, David, Copeland, Lekima K.F., Rashni, Bindiya, Hevalao, Robson S., and Keith, Philippe (2023) Pebbled places preferred by people and pipefish in a World Heritage protected area. Cybium, 47 (4). pp. 401-416.
Ebner, Brendan C., and Rentz, David (2022) Cool Runnings: Antennae facilitate collective motion by a grounded group of adult antlions. Ecology, 103 (7). e3682.
Earp, Hannah, Vye, Siobhan, Bohn, Katrin, Burrows, Michael, Chenery, Jade, Dickens, Stephanie, Foster, Charlotte, Grist, Hannah, Lamont, Peter, Long, Sarah, Morrall, Zoe, Pocklington, Jacqueline, Scott, Abigail, Watson, Gordon, West, Victoria, Jenkins, Stuart, Delany, Jane, and Sugden, Heather (2022) Do you see what i see? Quantifying inter-observer variability in an intertidal marine citizen science experiment. Citizen Science: Theory and Practice, 7 (1). 12.
Espinoza-Rodriguez, Ninive, and Barrios-Garrido, Hector (2022) Fibropapillomatosis in immature Green Turtles (Chelonia mydas) from the Gulf of Venezuela / Fibropapilomatosis en juveniles de Tortuga Verde (Chelonia mydas) del Golfo de Venezuela. Revista Cientifica, 32. e32086.
Ebner, Brendan C., Donaldson, James A., Marshall, Jonathan, Starrs, Danswell, and Freeman, Alastair B. (2021) Diving beetles strip eel to the bone. Food Webs, 27. e00188.
Espinoza-rodriguez, Ninive, Pernia, Yumara, Severeyn, Hector, Garcia de Severeyn, Yajaira, and Barrios-Garrido, Hector (2021) Echinoderms from the Gulf of Venezuela, north-western coast of Venezuela. Papéis Avulsos de Zoologia, 61. e20216151.
Espinoza-rodriguez, Ninive, and Barrios-Garrido, Hector (2021) First report of a Humpback Whale Megaptera novaeangliae (Borowski, 1781) (Cetartiodactyla: Balaenopteridae) stranding in the Gulf of Venezuela. Ecotropicos, 33. pp. 1-7.
Elisa, Manase, Kihwele, Emilian, Wolanski, Eric, and Birkett, Charon (2021) Managing wetlands to solve the water crisis in the Katuma River ecosystem, Tanzania. Ecohydrology and Hydrobiology, 21 (2). pp. 211-222.
Ebner, Brendan C., Donaldson, James A., Murphy, Helen, Thuesen, Paul, Ford, Andrew, Schaffer, Jason, and Keith, Philippe (2021) Waterfalls mediate the longitudinal distribution of diadromous predatory fishes structuring communities in tropical, short, steep coastal streams. Freshwater Biology, 66 (6). pp. 1225-1241.
Ebner, Brendan C. (2021) Yellowfin bream, Acanthopagrus australis, reorientate individual shells in search of prey. Food Webs, 29. e00216.
Edmunds, Richard C., and Burrows, Damien (2020) Got glycogen?: Development and multispecies validation of the novel preserve, precipitate, lyse, precipitate, purify (pplpp) workflow for environmental dna extraction from Longmire's preserved water samples. Journal of Biomolecular Techniques, 31 (4). pp. 125-150.
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Le Port, A., Roycroft, E.J., Thakur, V., and Lavery, S.D. (2016) Characterisation of eleven new polymorphic microsatellite markers for the coastal stingray Dasyatis brevicaudata (Dasyatidae Hutton 1875), and cross-amplification in seven dasyatid species. Biochemical Systematics and Ecology, 65. pp. 234-237.
Leitão, Rafael P., Zuanon, Jansen, Villeger, Sebastien, Williams, Stephen E., Baraloto, Christopher, Fortunel, Claire, Mendonça, Fernando P., and Mouillot, David (2016) Rare species contribute disproportionately to the functional structure of species assemblages. Proceedings of the Royal Society of London Series B, Biological Sciences, 283 (1828). pp. 1-9.
Lewis, Stephen E., Wüst, Raphael A.J., Webster, Jody, M., Collins, John, Wright, Shelley, A., and Jacobsen, Geraldine (2015) Rapid relative sea-level fall along north-eastern Australia between 1200 and 800 cal. yr BP: an appraisal of the oyster evidence. Marine Geology, 370. pp. 20-30.
Lough, J.M., Lewis, S.E., and Cantin, N.E. (2015) Freshwater impacts in the central Great Barrier Reef: 1648–2011. Coral Reefs, 34 (3). pp. 739-751.
Lawes, Michael J., Fisher, Diana O., Johnson, Chris N., Blomberg, Simon P., Frank, Anke S.K., Fritz, Susanne A., McCallum, Hamish, VanDerWal, Jeremy, Abbott, Brett N., Legge, Sarah, Letnic, Mike, Thomas, Colette R., Thurgate, Nikki, Fisher, Alaric, Gordon, Iain J., and Kutt, Alex (2015) Correlates of recent declines of rodents in Northern and Southern Australia: habitat structure is critical. PLoS ONE, 10 (6). e0130626. pp. 1-17.
Lyons, B.P. , Barber, J.L., Rumney, H.S., Bolam, T.P.C., Bersuder, P., Law, R.J., Mason, C., Smith, A.J., Morris, S., Devlin, M.J., Al-Enezi, M., Massoud, M.S., Al-Zaidan, A.S., and Al-Sarawi, H.A. (2015) Baseline survey of marine sediments collected from the State of Kuwait: PAHs, PCBs, brominated flame retardants and metal contamination. Marine Pollution Bulletin, 100 (2). pp. 629-636.
Lyons, B.P., Devlin, M.J., Abdul Hamid, S.A., Al-Otiabi, A.F. , Al-Enezi, M., Massoud, M.S., Al-Zaidan, A.S., Smith, A.J., Morris, S., Bersuder, P., Barber, J.L., Papachlimitzou, A., and Al-Sarawi, H.A. (2015) Microbial water quality and sedimentary faecal sterols as markers of sewage contamination in Kuwait. Marine Pollution Bulletin, 100 (2). pp. 689-698.
Lo, Eugenia Y.Y., Duke, Norman C., and Sun, Mei (2014) Phylogeographic pattern of Rhizophora (Rhizophoraceae) reveals the importance of both vicariance and long-distance oceanic dispersal to modern mangrove distribution. BMC Evolutionary Biology, 14. 83. pp. 1-15.
Lewis, Stephen E., Olley, Jon, Furuichi, Takahisa, Sharma, Ashneel, and Burton, Joanne (2014) Complex sediment deposition history on a wide continental shelf: implications for the calculation of accumulation rates on the Great Barrier Reef. Earth and Planetary Science Letters, 393 (1). pp. 146-158.
Lough, J.M., Llewellyn, L.E., Lewis, S.E., Turney, C.S.M., Palmer, J.G., Cook, C.G., and Hogg, A.G. (2014) Evidence for suppressed mid-Holocene northeastern Australian monsoon variability from coral luminescence. Paleoceanography, 29 (6). pp. 581-594.
Lewis, Stephen E., Sloss, Craig R., Murray-Wallace, Colin V., Woodroffe, Colin D., and Smithers, Scott G. (2013) Post-glacial sea-level changes around the Australian margin: a review. Quaternary Science Reviews, 74. pp. 115-138.
Lewis, Stephen E., Bainbridge, Zöe T., Kuhnert, Petra M., Sherman, Bradford S., Henderson, Brent, Dougall, Cameron, Cooper, Michelle, and Brodie, Jon E. (2013) Calculating sediment trapping efficiencies for reservoirs in tropical settings: a case study from the Burdekin Falls Dam, NE Australia. Water Resources Research, 49 (2). pp. 1017-1029.
Lewis, Stephen E., Wust, Raphael A.J., Webster, Jody M., Shields, Graham A., Renema, Willem, Lough, Janice M., and Jacobsen, Geraldine (2012) Development of an inshore fringing coral reef using textural, compositional and stratigraphic data from Magnetic Island, Great Barrier Reef, Australia. Marine Geology, 299-302. pp. 18-32.
Lewis, Stephen E., Schaffelke, Britta, Shaw, Melanie, Bainbridge, Zoë T., Rohde, Ken W., Kennedy, Karen, Davis, Aaron M., Masters, Bronwyn L., Devlin, Michelle J., Mueller, Jochen F., and Brodie, Jon E. (2012) Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef. Marine Pollution Bulletin, 65 (4-9). pp. 280-291.
Lewis, S.E., Brodie, J.E., McCulloch, M.T., Mallella, J., Jupiter, S.D., Williams, H. Stuart, Lough, J.M., and Matson, E.G. (2012) An assessment of an environmental gradient using coral geochemical records, Whitsunday Islands, Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 306-319.
Lewis, S.E., Smith, R., Brodie, J.E., Bainbridge, Z.T., Davis, A.M., and Turner, R. (2011) Using monitoring data to model herbicides exported to the Great Barrier Reef, Australia. In: Proceedings of 19th International Congress on Modelling and Simulation. pp. 2051-2056. From: MODSIM 2011 19th International Congress on Modelling and Simulation, 12–16 December 2011, Perth, WA, Australia.
Lambrechts, J., Humphrey, C., McKinna, L., Gourge, O., Fabricius, K.E., Mehta, A.J., Lewis, S., and Wolanski, E. (2010) Importance of wave-induced bed liquefaction in the fine sediment budget of Cleveland Bay, Great Barrier Reef. Estuarine, Coastal and Shelf Science , 89 (2). pp. 154-162.
Lewis, Stephen Edward, Henderson, Robert A., Dickens, Gerald R., Shields - Zhou, Graham A., and Coxhell, Simon (2010) The geochemistry of primary and weathered oil shale and coquina across the Julia Creek vanadium deposit (Queensland, Australia). Mineralium Deposita, 45 (6). pp. 599-620.
Lymbery, A.J., Hassan, M., Morgan, D.L., Beatty, S.J., and Doupé, R.G. (2010) Parasites of native and exotic freshwater fishes in south-western Australia. Journal of Fish Biology, 76 (7). pp. 1770-1785.
Lukacs, George P. (2010) Building global collaboration in tropical wetland research. Wetlands Ecology and Management, 18 (5). pp. 511-515.
Lukacs, G.P., and Finlayson, C.M. (2010) An evaluation of ecological information on Australia’s northern tropical rivers and wetlands. Wetlands Ecology and Management, 18 (5). pp. 597-625.
Lewis, Stephen, Milla, Rob, Brodie, Jon, Bainbridge, Zoë, and Davis, Aaron (2009) Pesticide residues in the Great Barrier Reef. Pesticides News, 86. pp. 8-11.
Lewis, Stephen E., Brodie, Jon E., Bainbridge, Zoe T., Rohde, Ken W., Davis, Aaron M., Masters, Bronwyn L., Maughan, Mirjam, Devlin, Michelle J., Mueller, Jochen F., and Schaffelke, Britta (2009) Herbicides: a new threat to the Great Barrier Reef. Environmental Pollution, 157 (8-9). pp. 2470-2484.
Lewis, S.E., Sherman, B.S., Bainbridge, Z.T., Brodie, J.E., and Cooper, M. (2009) Modelling and monitoring the sediment trapping efficiency and sediment dynamics of the Burdekin Falls Dam, Queensland, Australia. In: Proceedings of 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation. pp. 4022-4028. From: 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 13–17 July 2009, Cairns, QLD, Australia.
Lambrechts, Jonathan, Hanert, Emmanuel, Deleersnijder, Eric, Bernard, Paul-Emile, Legat, Vincent, Remacle, Jean-Francois, and Wolanski, Eric (2008) A multi-scale model of the hydrodynamics of the whole Great Barrier Reef. Estuarine, Coastal and Shelf Science , 79 (1). pp. 143-151.
Lotfi Neyestanak, A.A., Jahanbakht, M., Sadegh Mohammadi, H.R., and Graeeli, A. (2008) Field Simulation of a High Voltage Inductor for Series Resonant Generator. Journal of Electromagnetic Waves and Applications, 22 (17-18). pp. 2391-2398.
Lewis, Stephen E., Wust, Raphael A.J., Webster, Jody M., and Shields, Graham A. (2008) Mid-late Holocene sea-level variability in eastern Australia. Terra Nova, 20 (1). pp. 74-81.
Lymburner, Leo, and Burrows, Damien (2007) Prioritizing Waterbody Management in the Leichhardt Catchment: using a Landsat TM archive to characterise water permanence and water clarity. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.
Lankester, Allyson, and Greiner, Romy (2007) Developing appropriate incentives for improving water quality in the Burdekin River catchment. In: Proceedings of the 5th Australian Stream Management Conference. Australian Rivers: Making a Difference. From: 5th Australian Stream Management Conference: Australian Rivers: Making a Difference, 21-25 May 2007, Albury, NSW.
Lymburner, Leo, Burrows, Damien, and Butler, Barry (2007) Using remote sensing to map wetland water clarity and permanence: approaches for identifying wetlands requiring management in large catchments. In: Proceedings of the 5th Australian Stream Management Conference. Australian Rivers: Making a Difference. pp. 235-240. From: 5th Australian Stream Management Conference. Australian Rivers: Making a Difference, 21-25 May 2007, Albury, NSW.
Lewis, S.E., Bainbridge, Z.T., and Brodie, J.E. (2007) A review of load tools available for calculating pollutant exports to the Great Barrier Reef lagoon: a case study of varying catchment areas. In: Proceedings of MODSIM07: the International Congress on Modelling and Simulation. pp. 2396-2402. From: MODSIM07 International Congress on Modelling and Simulation: Land, Water & Environmental Management: Integrated Systems for Sustainability, 10-13 December 2007, Christchurch, New Zealand.
Lukacs, George (1998) Jungara CMTS flora and fauna survey. Report. James Cook University, Townsville, QLD, Australia.
Lukacs, George (1998) Riverside Gardens: creek and recirculation system. Aquatic and riparian vegetation. Report. James Cook University, Townsville, QLD, Australia.
Lukacs, G.P., and Weber, E. (1997) Seed germination requirements of four emergent macrophytes in North Queensland. Report. James Cook University, Townsville, QLD, Australia.
Lukacs, G.P. (1996) Comment on environmental issues surrounding WITF submissions - Mackay region. Report. James Cook University, Townsville, QLD, Australia.
Lukacs, G., and Skull, S. (1996) Townsville City Council regional growth options study. Conservation priorities. Report. James Cook University, Townsville, QLD, Australia.
Lukacs, G. (1996) Wetlands of the Townsville area. Report. James Cook University, Townsville, QLD, Australia.
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Moy, Karl, Schaffer, Jason, Hammer, Michael P., Attard, Catherine R.M., Beheregaray, Luciano, Duncan, Richard, Lintermans, Mark, Brown, Culum, and Unmack, Peter (2023) Alternative conservation outcomes from aquatic fauna translocations: Losing and saving the Running River rainbowfish. Aquatic Conservation: marine and freshwater ecosystems, 33 (12). pp. 1445-1459.
McGowan, Alexandra M., Lanyon, Janet M., Clark, Nicholas, Blair, David, Marsh, Helene, Wolanski, Eric, and Seddon, Jennifer M. (2023) Cryptic marine barriers to gene flow in a vulnerable coastal species, the dugong (Dugong dugon). Marine Mammal Science, 39 (3). pp. 918-939.
Malerba, Martino E., Duarte de Paula Costa, Micheli, Friess, Daniel A., Schuster, Lukas, Young, Mary A., Lagomasimo, David, Serrano, Oscar, Hickey, Sharyn M., York, Paul H., Rasheed, Michael, Lefcheck, Jonathan, Radford, Ben, Atwood, Trisha, Ierodiaconou, Daniel, and Macreadie, Peter (2023) Remote sensing for cost-effective blue carbon accounting. Earth-Science Reviews, 238. 104337.
Martinez-Baena, Francisco, Raoult, Vincent, Taylor, Matthew D., Gaston, Troy F., McLeod, Ian, and Bishop, Melanie J. (2023) Trophic Structure of Temperate Australian Oyster Reefs Within the Estuarine Seascape: a Stable Isotope Analysis. Estuaries and Coasts, 46. pp. 844-859.
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Martínez-Baena, Francisco, Lanham, Brendan S., McLeod, Ian, Taylor, Matthew D., McOrrie, Stephen, and Bishop, Melanie J. (2022) De novo reefs: Fish habitat provision by oyster aquaculture varies with farming method. Aquaculture Environment Interactions, 14. pp. 71-84.
Mattone, Carlo, Bradley, Michael, Barnett, Adam, Konovalov, Dmitry A., and Sheaves, Marcus (2022) Environmental conditions constrain nursery habitat value in Australian sub-tropical estuaries. Marine Environmental Research, 175. 105568.
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Murray, Nicholas J., Worthington, Thomas A., Bunting, Pete, Duce, Stephanie, Hagger, Valerie, Lovelock, Catherine E., Lucas, Richard, Saunders, Megan I., Sheaves, Marcus, Spalding, Mark, Waltham, Nathan J., and Lyons, Mitchell B. (2022) High-resolution mapping of losses and gains of Earth's tidal wetlands. Science, 376. pp. 744-749.
Marsh, Helene, Albouy, Camille, Arraut, Eduardo, Castelblanco-Martinez, Delma Nataly, Collier, Catherine, Edwards, Holly, James, Cassandra, and Keith-Diagne, Lucy (2022) How Might Climate Change Affect the Ethology and Behavioral Ecology of Dugongs and Manatees? In: Marsh, Helene, (ed.) Ethology and Behavioral Ecology of Sirenia. Ethology and Behavioral Ecology of Marine Mammals . Springer, Cham, Switzerland, pp. 351-406.
McKenzie, Len J., Langlois, Lucas A., and Roelfsema, Chris M. (2022) Improving Approaches to Mapping Seagrass within the Great Barrier Reef: From Field to Spaceborne Earth Observation. Remote Sensing, 14 (11). 2604.
Moran, D., Robson, B., Gruber, R., Waterhouse, J., Logan, M., Petus, C., Howley, C., Lewis, S., Tracey, D., James, C., Mellors, J., Bove, U., Davidson, J., Glasson, K., Lefevre, C., Macadam, A., Shanahan, M., Vasile, R., Zagorskis, I., and Shellberg, J. (2022) Marine Monitoring Program: Annual Report for Inshore Water Quality Monitoring 2020-2021. Report. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia.
McKenna, Skye, and Hoffmann, Luke (2022) Marine Plant assessment of the Townsville Breakwater Duck Pond - May 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
McKenna, S.A., Hoffmann, L., and Van De Wetering, C. (2022) Port of Townsville Seagrass Monitoring Program, Brief Report: May 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
McKenna, S.A., Van de Wetering, C., and Wilkinson, J. (2022) Port of Townsville Seagrass Monitoring Program, Interim Report: October 2021. Report. TropWATER, Cairns, QLD, Australia.
McKenna, Skye, Van de Wetering, Chris, and Wilkinson, Juliette (2022) Port of Townsville Seagrass Monitoring Program: 2021, TropWATER Report 22/05. Report. TropWATER, Cairns, QLD, Australia.
Martínez-Baena, Francisco, Lanham, Brendan S., McLeod, Ian M., Taylor, Matthew D., McOrrie, Stephen, Luongo, Alyssa, and Bishop, Melanie J. (2022) Remnant oyster reefs as fish habitat within the estuarine seascape. Marine Environmental Research, 179. 105675.
McAfee, Dominic, McLeod, Ian M., Alleway, Heidi K., Bishop, Melanie J., Branigan, Simon, Connell, Sean D., Copeland, Craig, Crawford, Christine M., Diggles, Ben K., Fitzsimons, James, Gilby, Ben L., Hamer, Paul, Hancock, Boze, Pearce, Robert, Russell, Kylie, and Gillies, Chris L. (2022) Turning a lost reef ecosystem into a national restoration program. Conservation Biology, 36 (6). e13958.
McKenna, S.A., Smith, T.M., Reason, C.L., and Rasheed, M.A. (2021) Port of Weipa long-term seagrass monitoring program: 2000 - 2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Mnaya, Bakari, Manase, Elisa, Kihwele, Emilian, Kiwango, Halima, Kiwango, Yustina, Ng'umbi, Gladys, and Wolanski, Eric (2021) Are Tanzanian National Parks affected by the water crisis? Findings and ecohydrology solutions. Ecohydrology and Hydrobiology, 21 (3). pp. 425-442.
McDonald, Sarah, Hassell, Kathryn, and Cresswell, Tom (2021) Effect of short-term dietary exposure on metal assimilation and metallothionein induction in the estuarine fish Pseudogobius sp. Science of the Total Environment, 772. 145042.
Mejias-Balsalobre, Carmen, Restrepo, Jamie, Borges, Gilberto, Garcia, Raul, Rojas-Cañizales, Daniela, Barrios-Garrido, Hector, and Valverde, Roldan A. (2021) Local community perceptions of sea turtle egg use in Tortuguero, Costa Rica. Ocean & Coastal Management, 201. 105423.
McKenzie, L.J., Collier, C.J., Langlois, L.A., Yoshida, R.L., Uusitalo, J., and Waycott, M. (2021) Marine Monitoring Program: Annual Report for Inshore Seagrass Monitoring 2019–20. Report. Great Barrier Reef Marine Park Authority, Townsville.
Morgan, David L., Lear, Karissa O., Ebner, Brendan C., and Beatty, Stephen J. (2021) Net design for selective control of the “plague minnow” Gambusia holbrooki that minimises impact on native Australian fishes. Journal of Fish Biology, 99 (6). pp. 2060-2065.
McKenna, S.A., van de Wetering, C., Wilkinson, J., and Rasheed, M.A. (2021) Port of Abbot Point Long-Term Seagrass Monitoring Program - 2020. A Report for North Queensland Bulk Ports Corporation (NQBP). Report. TropWATER, Cairns, QLD, Australia.
McKenna, Skye A. (2021) Port of Townsville Temporary Offloading Facility Seagrass Assessment May 2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
McKenzie, Len J., Yoshida, Rudi L., Aini, John W., Andrefouet, Serge, Colin, Patrick L., Cullen-unsworth, Leanne C., Hughes, Alec T., Payri, Claude E., Rota, Manibua, Shaw, Christina, Tsuda, Roy T., Vuki, Veikila C., and Unsworth, Richard K.F. (2021) Seagrass ecosystem contributions to people's quality of life in the Pacific Island Countries and Territories. Marine Pollution Bulletin, 167. 112307.
McKenzie, Len, Yoshida, Rudi L., Aini, John W., Andrefouet, Serge, Colin, Patrick L., Cullen-unsworth, Leanne C., Hughes, Alec T., Payri, Claude E., Rota, Manibua, Shaw, Christina, Skelton, Posa A., Tsuda, Roy T., Vuki, Veikila C., and Unsworth, Richard K.F. (2021) Seagrass ecosystems of the Pacific Island countries and territories: a global bright spot. Marine Pollution Bulletin, 167. 112308.
Moran, Lisandro, Rincon, Jose Ely, Sibira, Luis, Ortega, Maria G., and Barrios-Garrido, Hector (2020) Nuevos registros del camarón tigre Penaeus monodon Fabricius, 1798 (Decapoda: Penaeidae) en el Sistema del Lago de Maracaibo, Venezuela [New records of Giant Tiger Prawn, Penaeus monodon Fabricius, 1798 (Decapoda: Panaeidae) in the Maracaibo Lake System, Venezuela]. Ecotrópicos, 32. e0015.
McLeod, Ian M., Bourne, David, Ceccarelli, Daniela M., Boström-Einarsson, Lisa, Cook, Nathan, Fulton, Stella E., Hancock, Boze, Harrison, Peter, Hein, Margaux, Le Port, Agnès, Paewai-Higgins, Roma, Smith, Hillary A., and Smith, Adam (2020) Best practice coral restoration for the Great Barrier Reef. Report. Reef and Rainforest Research Centre Limited (RRRC), Cairns, QLD, Australia.
McLeod, Ian, and Newlands, Maxine (2020) Coral restoration in a warming world. The Marine Biologist, 14 (April). pp. 26-29.
Morrissey, Scott J., Schlaefer, Jodie A., and Kingsford, Michael J. (2020) Experimental validation of the relationships between cubozoan statolith elemental chemistry and salinity and temperature. Journal of Experimental Marine Biology and Ecology, 527. 151375.
McLeod, I.M., Bostrom Einarsson, L., Creighton, C., D'Anastasi, B., Diggles, B., Dwyer, P.G., Firby, L., Le Port, A., Luongo, A., Martinez-Baena, F., McOrrie, S., Heller-Wagner, G., and Gillies, C.L (2020) Habitat value of Sydney rock oyster (Saccostrea glomerata) reefs on soft sediments. Marine and Freshwater Research, 71 (7). pp. 771-781.
McLeod, Ian M., Heller-Wagner, Gideon, Gillies, Chris, Boström-Einarsson, Lisa, and Dwyer, Patrick G. (2020) Hitching a ride on Hercules: fatal epibiosis drives ecosystem change from mud banks to oyster reefs. Ecology, 101 (6). e03032.
McKenzie, Len J., and Yoshida, Rudi L. (2020) Over a decade monitoring Fiji's seagrass condition demonstrates resilience to anthropogenic pressures and extreme climate events. Marine Pollution Bulletin, 160. 111636.
McKenna, S., Chartrand, K., van de Wetering, C., Wells, J., Carter, A., and Rasheed, M. (2020) Port of Townsville Seagrass Monitoring Program: 2019. Report. James Cook University, Cairns, QLD, Australia.
McKenna, S., Wilkinson, J., Chartrand, K., and van de Wetering, C. (2020) Port of Townsville Seagrass Monitoring Program: 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Marsh, H., Grech, A., Miller, R., and Collins, K. (2020) An assessment of the distribution and abundance of dugongs and large in-water turtles in Cleveland Bay and adjacent bays to provide baseline information for the Port of Townsville Channel Upgrade Project: a report for the Port of Townsville Limited. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
McKenzie, Len J, Nordlund, Lina M., Jones, Benjamin L., Cullen-Unsworth, Leanne C., Roelfsema, Chris, and Unsworth, Richard K.F. (2020) The global distribution of seagrass meadows. Environmental Research Letters, 15 (7). 074041.
McAfee, Dominic, McLeod, Ian M., Bostrom-Einarsson, Lisa, and Gillies, Chris L. (2020) The value and opportunity of restoring Australia's lost rock oyster reefs. Restoration Ecology, 28. 2. pp. 304-314.
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Rasheed, Michael A., McKenna, Skye, Coles, Rob, and Carter, Alex (2017) Protection of Great Barrier Reef seagrasses through innovative port industry and science research partnerships. In: Proceedings of the Australasian Coasts & Ports 2017 Conference. pp. 910-916. From: Australasian Coasts & Ports 2017 Conference: working with nature, 21-23 June 2017, Cairns, QLD, Australia.
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Ryan, E.J., Smithers, S.G., Lewis, S.E., Clark, T.R., and Zhao, J.X. (2016) Chronostratigraphy of Bramston Reef reveals a long-term record of fringing reef growth under muddy conditions in the central Great Barrier Reef. Palaeogeography, Palaeoclimatology, Palaeoecology, 441 (Part 4). pp. 734-747.
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Rasheed, M.A., McKenna, S.A., and Tol, S. (2013) Seagrass habitat of Cairns Harbour and Trinity Inlet: annual monitoring and updated baseline survey. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Ridd, Peter V., Larcombe, Piers, Stieglitz, Thomas, and Orpin, Alan (2012) Comment on "Towards ecologically relevant targets for river pollutant loads to the Great Barrier Reef" by F.J. Kroon, Marine Pollution Bulletin 65 (4-9) 261-266. Marine Pollution Bulletin. pp. 1-4.
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Rasheed, Michael A. (1999) Recovery of experimentally created gaps within a tropical Zostera capricorni (Aschers.) seagrass meadow, Queensland Australia. Journal of Experimental Marine Biology and Ecology, 235 (2). pp. 183-200.
Reason, Carissa, York, Paul, and Rasheed, Michael (2022) Seagrass habitat of Cairns Harbour and Trinity Inlet: Annual Monitoring Report and Cairns Shipping Development Project Monitoring Report 2021. Report. TropWATER, Cairns, QLD, Australia. (Unpublished)
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Sheaves, M., Mattone, C., Barnett, A., Abrantes, K., Bradley, M., Sheaves, A., Sheaves, J., and Waltham, N.J. (2024) Whale sharks as oceanic nurseries for Golden Trevally. Pacific Conservation Biology, 30 (1). PC23004.
Santoro, Anthony, Chambers, Jane M., Ebner, Brendan, and Beatty, Stephen J. (2023) Climate change affects the early-life history of a freshwater turtle in a severely drying region. Austral Ecology, 48 (8). pp. 2205-2229.
Silburn, D. Mark, Fillols, Emilie, Rojas-Ponce, Samuel, Lewis, Steve, and McHugh, A.D. (2023) Direct comparison of runoff of residual and knockdown herbicides in sugarcane using a rainfall simulator finds large difference in runoff losses and toxicity relative to diuron. Science of the Total Environment, 863. 160976.
Smith, Adam K., Cook, Nathan, Grundy, Allen, Lück, Michael, Pert, Petina L., Picken, Felicity, and Stacey, Joanne (2023) Innovative local response to cyclone damaged reef leads to rapid tourism recovery. Journal of Ecotourism, 22 (3). pp. 354-374.
Scott, A., McKenna, S., and Rasheed, M. (2023) Port of Karumba long-term annual seagrass monitoring 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Singleton, Tarquin, Concannon, Tess, Singleton, Gavin, McArdle, Alicia, Chartrand, Katie, Ridley, Andy, Fisher, Eric, Cameron, Kerry, and Murgha, Brian (2023) Reef Cooperative Coming Together as One. In: [Presented at the Australian Marine Sciences Association Conference 2023]. From: Australian Marine Sciences Association Conference 2023: Science in Sea Country, 2-7 July 2023, Gold Coast, QLD, Australia.
Smith, Hillary A., Fulton, Stella E., McLeod, Ian M., Page, Cathie A., and Bourne, David G. (2023) Sea-weeding: Manual removal of macroalgae facilitates rapid coral recovery. Journal of Applied Ecology, 60 (11). pp. 2459-2471.
Scott, A., McKenna, S., and Rasheed, M. (2023) Seagrass habitat in the Port of Thursday Island: Annual seagrass monitoring report 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Scott, Abbi, Chartrand, Katie, Curnock, Matt, Taylor, Bruce, Loder, Jennifer, Forster, Rebecca, Randall, Carly, Fisher, Eric, Donnelly, Ryan, Kish, Hannah, and Murgha, Brian (2023) The role of community-based Hubs in reef restoration: Collaborative monitoring at Moore Reef. In: [Presented at the Australian Marine Sciences Association Conference 2023]. From: Australian Marine Sciences Association Conference 2023: Science in Sea Country, 2-7 July 2023, Gold Coast, QLD, Australia.
Smith, T.M., Reason, C.L., and Rasheed, M.A. (2022) Balaclava Island seagrass and marine plants baseline survey. A Report for Gladstone Ports Corporation. Report. TropWATER, Cairns, QLD, Australia.
Smith, Adam, Songcuan, Al Jayson, Cook, Nathan, Brown, Rachelle, Cook, Kailash, and Richardson, Reuben (2022) Engineering, Ecological and Social Monitoring of the Largest Underwater Sculpture in the World at John Brewer Reef, Australia. Journal of Marine Science and Engineering, 10 (11). 1617.
Snape, Natale (2022) Environmental DNA survey of Rhinella marina (cane toad) on Mulgumpin (Moreton Island) – June 2022. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Snape, Natale, Villacorta Rath, Cecilia, and Burrows, Damien (2022) Environmental DNA survey of Torres Strait Islands for invasive species – 2022 sampling campaign. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Smith, T.M., McKenna, S.M., York, P.H., and Rasheed, M.A. (2022) Green Island Jetty Repairs Seagrass Monitoring Final Report ‐ Sixteen Month Post‐Disturbance, October 2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Scott, Abbi L., Whap, Terrence, Kris, Johnny, Carlisle, Moni, David, Madeina, Rasheed, Michael A., York, Paul H., and Carter, Alex B. (2022) Keeping good company: A co-created, co-designed and co-delivered collaborative response to seagrass declines in western Torres Strait. In: [Presented at the Australian Marine Science Association Conference 2022]. From: Australian Marine Science Association Conference 2022: Change and connections, 7-12 August 2022, Cairns, Queensland, Australia.
Schlaefer, Jodie, Carter, Alexandra, Choukroun, Severine, Coles, Robert, Critchell, Kay, Lambrechts, Jonathan, Rasheed, Michael, Tol, Samantha, and Grech, Alana (2022) Marine plant dispersal and connectivity measures differ in their sensitivity to biophysical model parameters. Environmental Modelling & Software, 149. 105313.
Smith, T.M., Reason, C., and Rasheed, M.A. (2022) Port of Gladstone East Bank Sea Disposal Site Benthic Habitat Monitoring 2021. Report. TropWATER, Cairns, QLD, Australia.
Scott, A., McKenna, S., and Rasheed, M. (2022) Port of Karumba Long‐term Annual Seagrass Monitoring 2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Smith, Hillary A., Brown, Dylan A., Arjunwadkar, Chaitanya V., Fulton, Stella E., Whitman, Taylor, Hermanto, Bambang, Mastroianni, Elissa, Mattocks, Neil, Smith, Adam K., Harrison, Peter L., Boström-Einarsson, Lisa, McLeod, Ian M., and Bourne, David G. (2022) Removal of macroalgae from degraded reefs enhances coral recruitment. Restoration Ecology, 30 (7). e13624.
Scott, A.L., Reason, C., McKenna, S.A., and Rasheed, M.A. (2022) Seagrass Habitat in the Port of Thursday Island: Annual Monitoring Report 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Smith, T.M., Reason, C., McKenna, S., and Rasheed, M.A. (2022) Seagrasses in Port Curtis and Rodds Bay 2021 Annual long‐term monitoring. A Report for Gladstone Ports Corporation. Report. TropWATER, Cairns.
Smith, Timothy M., Sherman, Craig D.H., Cumming, Erin E., York, Paul H., and Jarvis, Jessie C. (2022) Size matters: variations in seagrass seed size at local scales affects seed performance. Hydrobiologia, 849. pp. 2335-2352.
Shaver, Elizabeth C., McLeod, Elizabeth, Hein, Margaux Y., Palumbi, Stephen R., Quigley, Kate, Vardi, Tali, Mumby, Peter J., Smith, David, Montoya-Maya, Phanor, Muller, Erinn M., Banaszak, Anastazia T., McLeod, Ian M., and Wachenfeld, David (2022) A roadmap to integrating resilience into the practice of coral reef restoration. Global Change Biology, 28 (16). pp. 4751-4764.
Scott, A.L., Whap, T., Kris, J., Joe, S., Carlisle, M., David, M., Rasheed, M.A., York, P.H., and Carter, A.B. (2022) The role of dugong and turtle grazing in Torres Strait seagrass declines: Exclusion experiments show the role of green turtle and dugong grazing in structuring Torres Strait seagrass meadows. Report. National Environmental Science Programme (NESP), Townsville, QLD, Australia.
Smith, Hillary A., Boström-Einarsson, Lisa, and Bourne, David G. (2022) A stratified transect approach captures reef complexity with canopy-forming organisms. Coral Reefs, 41. pp. 897-905.
Sinclair, Elizabeth A., Sherman, Craig D.H., Statton, John, Copeland, Craig, Matthews, Andrew, Waycott, Michelle, Van Dijk, Kor-Jent, Vergés, Adriana, Kajlich, Lana, McLeod, Ian M., and Kendrick, Gary A. (2021) Advances in approaches to seagrass restoration in Australia. Ecological Management and Restoration, 22 (1). pp. 10-21.
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Silva, Catarina N. S., Young, Emma F., Murphy, Nicholas P., Bell, James J., Green, Bridget S., Morley, Simon A., Duhamel, Guy, Cockcroft, Andrew C., and Strugnell, Jan M. (2021) Climatic change drives dynamic source–sink relationships in marine species with high dispersal potential. Ecology and Evolution, 11 (6). pp. 2535-2550.
Sheaves, Marcus, Mattone, Carlo, Connolly, Rod M., Hernandez, Stephanie, Nagelkerken, Ivan, Murray, Nicholas, Ronan, Michael, Waltham, Nathan John, and Bradley, Michael (2021) Ecological constraint mapping: understanding uutcome-limiting bottlenecks for improved environmental decision-making in marine and coastal environments. Frontiers in Marine Science, 8. 717448.
Smith, Adam, Cook, Nathan, Cook, Kailash, Brown, Rachelle, Woodgett, Richard, Veron, John, and Saylor, Vicki (2021) Field measurements of a massive Porites coral at Goolboodi (Orpheus Island), Great Barrier Reef. Scientific Reports, 11 (1). 15334.
Scott, Abigail L., York, Paul H., and Rasheed, Michael A. (2021) Herbivory has a major influence on structure and condition of a Great Barrier Reef subtropical seagrass meadow. Estuaries and Coasts, 44. pp. 506-521.
Shumway, Nicole, Bell-James, Justine, Fitzsimons, James A., Foster, Rose, Gillies, Chris, and Lovelock, Catherine E. (2021) Policy solutions to facilitate restoration in coastal marine environments. Marine Policy, 134. 104789.
Smith, T.M., and Rasheed, M.A. (2021) Port of Bundaberg Seagrass and Benthic Monitoring Survey 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Smith, T.M., and Rasheed, M.A. (2021) Port of Bundaberg Spoil Ground Seagrass and Benthic Fauna Survey 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Scott, A.L., and Rasheed, M.A. (2021) Port of Karumba Long-term Annual Seagrass Monitoring 2020. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Scott, A.L, and Rasheed, M.A. (2021) Seagrass Habitat in the Port of Thursday Island: Annual Monitoring Report 2021. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Scott, A.L., and Rasheed, M.A. (2021) Seagrass Habitat in the Port of Thursday Island: Annual Monitoring Report 2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Smith, T.M., Reason, C., McKenna, S., and Rasheed, M.A. (2021) Seagrasses in Port Curtis and Rodds Bay 2020 Annual long‐term monitoring. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Scott, Abigail L., York, Paul H., and Rasheed, Michael A. (2021) Spatial and temporal patterns in macroherbivore grazing in a multi-species tropical seagrass meadow of the Great Barrier Reef. Diversity, 13 (1). 12.
Scott, Abigail L., York, Paul H., Macreadie, Peter I., and Rasheed, Michael A. (2021) Spatial and temporal variability of green turtle and dugong herbivory in seagrass meadows of the southern Great Barrier Reef (GBR). Marine Ecology Progress Series, 667. pp. 225-231.
Saha, Narottam, Webb, Gregory E., Zhao, Jian-Xin, Lewis, Stephen E., Nguyen, Ai Duc, and Feng, Yuexing (2021) Spatiotemporal variation of rare earth elements from river to reef continuum aids monitoring of terrigenous sources in the Great Barrier Reef. Geochimica et Cosmochimica Acta, 299. pp. 85-112.
Scott, Abbi, York, Paul, Macreadie, Peter, and Rasheed, Michael (2021) The role of herbivores as ecosystem engineers in tropical seagrass meadows. In: [Presented at the Australian Marine Sciences Association Conference 2021]. From: Australian Marine Sciences Association Conference 2021: Marine Science in the Anthropocene, 27 June - 2 July 2021, Virtual.
Schlaefer, Jodie A., Wolanski, Eric, Yadav, Shreya, and Kingsford, Michael J. (2020) Behavioural maintenance of highly localised jellyfish (Copula sivickisi, class Cubozoa) populations. Marine Biology, 167. 40.
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Scott, Abigail L., York, Paul H., and Rasheed, Michael A. (2020) Green turtle (Chelonia mydas) grazing plot formation creates structural changes in a multi-species Great Barrier Reef seagrass meadow. Marine Environmental Research, 162. 105183.
Sasmito, Sigit D., Kuzyakov, Yakov, Lubis, Ali Arman, Murdiyarso, Daniel, Hutley, Lindsay B., Bachri, Samsul, Friess, Daniel A., Martius, Christopher, and Borchard, Nils (2020) Organic carbon burial and sources in soils of coastal mudflat and mangrove ecosystems. Catena, 187. 104414.
Smith, Tim, Reason, Carissa, McKenna, Skye, and Rasheed, Michael (2020) Port of Weipa long‐term seagrass monitoring program, 2000‐2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Smith, T.M., Chartrand, K.M., Wells, J.N., Carter, A.B., and Rasheed, M.A. (2020) Seagrasses in Port Curtis and Rodds Bay 2019 Annual long‐term monitoring and whole of port survey: a report for Gladstone Ports Corporation. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Smith, T.M., Reason, C.L., and Rasheed, M.A. (2020) Western Basin expansion reclamation area and barge unloading facility seagrass and marine plants survey. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Sheaves, Marcus, Abrantes, Katya, Barnett, Adam, Benham, Claudia, Dale, Patricia, Mattone, Carlo, Sheaves, Alison, Waltham, Nathan, and Bradley, Michael (2020) The consequences of paradigm change and poorly validated science: the example of the value of mangroves to fisheries. Fish and Fisheries, 21 (5). pp. 1067-1075.
Stieglitz, Thomas C., Dujon, Antoine M., Peel, Joanne, and Amice, Erwan (2020) The potential of marginal coastal nursery habitats for the conservation of a culturally important Caribbean marine species. Diversity and Distributions, 26 (5). pp. 565-574.
Saha, Narottam, Webb, Gregory E., Zhao, Jian-xin, Nguyen, Ai Duc, Lewis, Stephen, and Lough, Janice (2019) Coral-based high-resolution rare earth element proxy for terrestrial sediment discharge affecting coastal seawater quality, Great Barrier Reef. Geochimica et Cosmochimica Acta, 254. pp. 173-191.
Scott, Abigail L., York, Paul H., and Rasheed, Michael A. (2019) Exclusion studies reveal the interactions between herbivores in structuring seagrass meadows. In: [Presented at the 25th Biennial Coastal and Estuarine Research Federation Conference 2019]. From: 25th Biennial Coastal and Estuarine Research Federation Conference 2019, 3-7 November 2023, Mobile, Alabama, USA.
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Salmo, Severino G., Tibbetts, Ian R., and Duke, Norman C. (2019) Recolonization of mollusc assemblages in mangrove plantations damaged by Typhoon Chan-hom in the Philippines. Estuarine, Coastal and Shelf Science, 228. 106365.
Schmidt, Katrin, Richards, Stephen, Pearson, Richard G., Alford, Ross A., and Puschendorf, Robert (2019) Seasonal, annual and decadal change in tadpole populations in tropical Australian streams. Amphibia-Reptilia, 40 (4). pp. 447-459.
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Schlaefer, Jodie A., Wolanski, Eric, and Kingsford, Michael J. (2018) Swimming behaviour can maintain localised jellyfish (Chironex fleckeri: Cubozoa) populations. Marine Ecology Progress Series, 591. pp. 287-302.
Schrameyer, Verena, York, Paul H., Chartrand, Katie, Ralph, Peter J., Kuhl, Michael, Brodersen, Kasper Elgetti, and Rasheed, Michael A. (2018) Contrasting impacts of light reduction on sediment biogeochemistry in deep- and shallow-water tropical seagrass assemblages (Green Island, Great Barrier Reef). Marine Environmental Research, 136. pp. 38-47.
Scott, Abigail L., York, Paul H., and Rasheed, Michael A. (2018) Keep off the grass: Using herbivore exclusion cages to understand herbivory in seagrass meadows. In: [Presented at the World Seagrass Conference 2018]. From: World Seagrass Conference 2018, 11-17 June 2018, Singapore.
Salmo, Severino G., Tibbetts, Ian R., and Duke, Norman C. (2018) Nekton communities as indicators of habitat functionality in Philippine mangrove plantations. Marine and Freshwater Research, 69 (3). pp. 477-485.
Shepherd, Lloyd, Sozou, Alysha, and Rasheed, Michael (2018) Port of Karumba Long‐term Annual Seagrass Monitoring: November 2017. Report. UNSPECIFIED, Cairns.
Sozou, Alysha, and Rasheed, Michael (2018) Port of Weipa long-term seagrass monitoring program, 2000 - 2017. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
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Waltham, Nathan J., Wegscheidl, Carla, Volders, Adrian, Smart, James C.R., Hasan, Syezlin, Ledee, Elodie, and Waterhouse, Jane (2021) Land use conversion to improve water quality in high DIN risk, low-lying sugarcane areas of the Great Barrier Reef catchments. Marine Pollution Bulletin, 167. 112373.
Wolanski, Eric, Richmond, Robert H., and Golbuu, Yimnang (2021) Oceanographic chaos and its role in larval self-recruitment and connectivity among fish populations in Micronesia. Estuarine, Coastal and Shelf Science, 259. 107461.
Wallace, Jim, and Waltham, Nathan J. (2021) On the potential for improving water quality entering the Great Barrier Reef lagoon using constructed wetlands. Marine Pollution Bulletin, 170. 112627.
Waltham, N., Iles, J.A., and Johns, J. (2021) Port of Abbot Point Ambient Marine Water Quality Monitoring Program: Annual Report 2020-2021: A Report for North Queensland Bulk Ports Corporation. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Waltham, N., Iles, J.A., and Johns, J. (2021) Port of Mackay and Hay Point Ambient Marine Water Quality Monitoring Program: Annual Report 2020-2021. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Waltham, N.J., Iles, J.A., and Johns, J. (2021) Port of Weipa Ambient Marine Water Quality Monitoring Program: Annual Report 2020-2021: A Report for North Queensland Bulk Ports Corporation. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Waltham, N.J., and Iles, J.A. (2021) Southern Mackay Ambient Marine Water Quality Monitoring Program: Annual report 2020-2021. Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Wolanski, Eric (2021) Threats to biodiversity in Australia’s Burdekin River Basin. Biodiversity Online Journal, 1 (3). BOJ.000513.2021.
Waltham, Nathan J., Alcott, Caitlin, Barbeau, Myriam A., Cebrian, Just, Connolly, Rod, Deegan, Linda A., Dodds, Kate, Goodridge Gaines, Lucy, Gilby, Ben, Henderson, Christopher J., McLuckie, Catherine M., Minello, Thomas, Norris, Gregory, Ollerhead, Jeff, Pahl, James, Reinhardt, James F., Rezek, Ryan J., Simenstad, Charles, Smith, Joseph A.M., Sparks, Eric, Staver, Lorie W., Ziegler, Shelby, and Weinstein, Michael (2021) Tidal Marsh Restoration Optimism in a Changing Climate and Urbanizing Seascape. Estuaries and Coasts, 44. pp. 1681-1690.
Waltham, Nathan, and Schaffer, Jason (2021) Will fencing floodplain and riverine wetlands from feral pig damage conserve fish community values? Ecology and Evolution, 11 (20). pp. 13780-13792.
Wolanski, E., Petus, C., Lambrechts, J., Brodie, J., Waterhouse, J., and Tracey, D. (2021) The intrusion of polluted Fly River mud into Torres Strait. Marine Pollution Bulletin, 166. 112243.
Whalan, Mathew A., Whippo, Ross D.B., Stachowicz, John J., York, Paul H., Aiello, Erin, Alcoverro, Teresa, Altieri, Andrew H., Bertolini, Camilla, Benedetti-Cecchi, Lisandro, Bresch, Midoli, Bulleri, Fabio, Carnell, Paul E., Cimon, Stéphanie, Connolly, Rod M., Cusson, Mathieu, Diskin, Meredith S., D'Souza, Elrika, Flores, Augusto A.V., Fodrie, F. Joel, Galloway, Aaron W.E., Gaskins, Leo C., Graham, Olivia J., Hanley, Torrance C., Henderson, Christopher J., Hereu, Clara M., Hessing-Lewis, Margot, Hovel, Kevin A., Hughes, Brent B., Hughes, A. Randall, Hultgren, Kristin M., Jänes, Holger, Janiak, Dean S., Johnston, Lane N., Jorgensen, Pablo, Kelaher, Brendan P., Kruschel, Claudia, Lanham, Brendan S., Lee, Kun-Seop, Lefcheck, Jonathan S., Lozano-Álvarez, Enrique, Macreadie, Peter I., Monteith, Zachary L., O'Connor, Nessa E., Olds, Andrew D., O'Leary, Jennifer K., Patrick, Christopher J., Pino, Oscar, Poore, Alistair G.B., Rasheed, Michael A., Raymond, Wendel W., Reiss, Katrin, Rhoades, O. Kennedy, Robinson, Max T., Ross, Paige G., Rossi, Francesca, Schlacher, Thomas A., Seemann, Janina, Silliman, Brian R., Smee, Delbert L., Thiel, Martin, Unsworth, Richard K.F., van Tussenbroek, Brigitta I., Vergés, Adriana, Yeager, Mallarie E., Yednock, Bree K., Ziegler, Shelby L., and Duffy, J. Emmett (2020) Climate drives the geography of marine consumption by changing predator communities. Proceedings of the National Academy of Sciences of the United States of America, 117 (45). pp. 28160-28166.
Ward, Michelle, Tulloch, Ayesha I. T., Radford, James Q., Williams, Brooke A., Reside, April E., Macdonald, Stewart L., Mayfield, Helen J., Maron, Martine, Possingham, Hugh P., Vine, Samantha J., O’Connor, James L., Massingham, Emily J., Greenville, Aaron C., Woinarski, John C. Z., Garnett, Stephen T., Lintermans, Mark, Scheele, Ben C., Carwardine, Josie, Nimmo, Dale G., Lindenmayer, David B., Kooyman, Robert M., Simmonds, Jeremy S., Sonter, Laura J., and Watson, James E. M. (2020) Impact of 2019–2020 mega-fires on Australian fauna habitat. Nature Ecology & Evolution, 4. pp. 1321-1326.
Wolanski, Eric, Wattayakorn, Gullaya, Furukawa, Keita, and Chavanich, Suchana Apple (2020) Integrating science in the management of enclosed seas - a synthesis. Estuarine Coastal And Shelf Science, 234. 106647. pp. 1-3.
Wolanski, Eric, Choukroun, Severine, and Nhan, Nguyen Huu (2020) Island building and overfishing in the Spratly Islands archipelago are predicted to decrease larval flow and impact the whole system. Estuarine, Coastal and Shelf Science, 233. 106545.
Waltham, Nathan J., Pyott, Merv, Buelow, Christina, and Wearne, Lynise (2020) Mechanical harvester removes invasive aquatic weeds to restore water quality and fish habitat values on the Burdekin floodplain. Ecological Management and Restoration, 21 (3). pp. 187-197.
Waltham, Nathan J., McCann, Jack, Power, Trent, Moore, Matt, and Buelow, Christina (2020) Patterns of fish use in urban estuaries: engineering maintenance schedules to protect broader seascape habitat. Estuarine, Coastal and Shelf Science, 238. 106729.
Waltham, Nathan J., Coleman, Laura, Buelow, Christina, Fry, Scott, and Burrows, Damien (2020) Restoring fish habitat values on a tropical agricultural floodplain: learning from two decades of aquatic invasive plant maintenance efforts. Ocean and Coastal Management, 198. 105355.
Waltham, Nathan J., and Sheaves, Marcus (2020) Thermal exposure risks to mobile tropical marine snails: are eco-engineered rock pools on seawalls scale-specific enough for comprehensive biodiversity outcomes? Marine Pollution Bulletin, 156. 111237.
Waltham, Nathan J., Elliott, Michael, Lee, Shing Yip, Lovelock, Catherine, Duarte, Carlos M., Buelow, Christina, Simenstad, Charles, Nagelkerken, Ivan, Claassens, Louw, Wen, Colin K.-C., Barletta, Mario, Connolly, Rod, Gillies, Christopher, Mitsch, William, Ogburn, Matthew B., Purandare, Jemma, Possingham, Hugh, and Sheaves, Marcus (2020) UN decade on ecosystem restoration 2021-2020 - what chance for success in restoring coastal ecosystems? Frontiers in Marine Science, 7. 71. pp. 1-5.
Wolanski, Eric, and Lambrechts, Jonathan (2020) The net water circulation in the far Northern Great Barrier Reef. Estuarine, Coastal and Shelf Science, 235. 106569.
Wu, Paul Pao-Yen, Mengersen, Kerrie, Caley, M. Julian, McMahon, Kathryn, Rasheed, Michael A., and Kendrick, Gary A. (2019) Analysing the dynamics and relative influence of variables affecting ecosystem responses using functional PCA and boosted regression trees: a seagrass case study. Methods in Ecology and Evolution, 10 (10). pp. 1723-1733.
Wolanski, Eric, Day, John W., Elliott, Michael, and Ramachandran, Ramesh (2019) Coasts and Estuaries: the future. Elsevier, Oxford, United Kingdom.
Wolanski, Eric (2019) Estuarine ecohydrology modeling: what works and within what limits? In: Wolanski, Eric, Day, John W., Elliott, Michael, and Ramachandran, Ramesh, (eds.) Coasts and Estuaries: the future. Elsevier, Oxford, United Kingdom, pp. 503-521.
Waltham, Nathan J., Burrows, Damien, Wegscheidl, Carla, Buelow, Christina, Ronan, Mike, Connolly, Niall, Groves, Paul, Marie-Audas, Donna, Creighton, Colin, and Sheaves, Marcus (2019) Lost floodplain wetland environments and efforts to restore connectivity, habitat, and water quality settings on the Great Barrier Reef. Frontiers in Marine Science, 6. 71. pp. 1-14.
Wells, J.N., Rasheed, M.A., and Coles, R.G. (2019) Seagrass Habitat in the Port of Thursday Island: Annual Monitoring Report 2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Wells, Jaclyn, Reason, Carissa, and Rasheed, Michael (2019) Seagrass habitat of Mourilyan Harbour: Annual Monitoring Report – 2018. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Weber, Ulrich W., Cook, Peter G., Brennwald, Matthias S., Kipfer, Rolf, and Stieglitz, Thomas C. (2019) A novel approach to quantify air-water gas exchange in shallow surface waters using high-resolution time series of dissolved atmospheric gases. Environmental Science and Technology, 53 (3). pp. 1463-1470.
Wolff, Nicholas H., Da Silva, Eduardo Teixeira, Devlin, Michelle, Anthony, Kenneth R.N., Lewis, Stephen, Tonin, Hemerson, Brinkman, Richard, and Mumby, Peter J. (2018) Contribution of individual rivers to Great Barrier Reef nitrogen exposure with implications for management prioritization. Marine Pollution Bulletin, 133. pp. 30-43.
Waltham, Nathan J., and Dafforn, Katherine A. (2018) Ecological engineering in the coastal seascape. Ecological Engineering, 120. pp. 554-559.
Waltham, Nathan J. (2018) Acute thermal effects in an inland freshwater crab Austrothelphusa transversa (von Martens, 1868) occupying seasonal, tropical rivers. Journal of Crustacean Biology, 38 (4). pp. 497-503.
Waltham, Nathan J., and Sheaves, Marcus (2018) Eco-engineering rock pools to a seawall in a tropical estuary: microhabitat features and fine sediment accumulation. Ecological Engineering, 120. pp. 631-636.
Wu, Paul Pao-Yen, McMahon, Kathryn, Rasheed, Michael A., Kendrick, Gary A., York, Paul H., Chartrand, Kathryn, Caley, M. Julian, and Mengersen, Kerrie (2018) Managing seagrass resilience under cumulative dredging affecting light: predicting risk using dynamic Bayesian networks. Journal of Applied Ecology, 55 (3). pp. 1339-1350.
Williams, Alan N., Ulm, Sean, Sapienza, Tom, Lewis, Stephen, and Turney, Chris S.M. (2018) Sea-level change and demography during the last glacial termination and early Holocene across the Australian continent. Quaternary Science Reviews, 182. pp. 144-154.
Waltham, Nathan J., and Schaffer, Jason R. (2018) Thermal and asphyxia exposure risk to freshwater fish in feral-pig-damaged tropical wetlands. Journal of Fish Biology, 93 (4). pp. 723-728.
Wolff, Nicholas H., Mumby, Peter J., Devlin, Michelle, and Anthony, Kenneth R.N. (2018) Vulnerability of the Great Barrier Reef to climate change and local pressures. Global Change Biology, 24 (5). pp. 1978-1991.
Waltham, N.J., Schaffer, J., Buist, J., Geyle, M., and Toby, D. (2018) Working with land and sea rangers to tackle tropical wetland restoration and conservation on the north-western islands, Torres Straits, Australia. Wetlands Ecology and Management, 26 (6). pp. 1143-1156.
Wu, Paul Pao-Yen, Mengersen, Kerrie, McMahon, Kathryn, Kendrick, Gary A., Chartrand, Katie, York, Paul H., Rasheed, Michael A., and Caley, M. Julian (2017) Timing anthropogenic stressors to mitigate their impact on marine ecosystem resilience. Nature Communications, 8. 1263.
Waltham, N.J., and Fixler, S. (2017) Aerial herbicide spray to control invasive water hyacinth (Eichhornia crassipes): water quality concerns fronting fish occupying a tropical floodplain wetland. Tropical Conservation Science, 10.
Waltham, Nathan J., and Sheaves, Marcus (2017) Acute thermal tolerance of tropical estuarine fish occupying a man-made tidal lake, and increased exposure risk with climate change. Estuarine, Coastal and Shelf Science, 196. pp. 173-181.
Williams, Christopher, and Templeman, Shelley (2017) Mt Leyshon Mine Receiving Environment Monitoring Program Report 1 Nov 2015 to 31 Oct 2016. Report. Centre for Tropical Water and Aquatic Ecosystem Research (TropWATER), Townsville, QLD, Australia.
Waterhouse, Jane, Schaffelke, Britta, Bartley, Rebecca, Eberhard, Rachel, Brodie, Jon, Star, Megan, Thorburn, Peter, Rolfe, John, Ronan, Mike, Taylor, Bruce, and Kroon, Frederieke (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition. Report. State of Queensland.
Waterhouse, Jane, Brodie, Jon, Tracey, Dieter, Smith, Rachel, VanderGragt, Maria, Collier, Catherine, Petus, Caroline, Baird, Mark, Kroon, Frederieke, Mann, Reiner, Sutcliffe, Terri, Waters, Davis, and Adame, Fernanda (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition, Chapter 3: the risk from anthropogenic pollutants to Great Barrier Reef coastal and marine ecosystems. Report Section. State of Queensland.
Waterhouse, Jane, Schaffelke, Britta, Bartley, Rebecca, Eberhard, Rachel, Brodie, Jon, Star, Megan, Thorburn, Peter, Rolfe, John, Ronan, Mike, Taylor, Bruce, and Kroon, Frederieke (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition, Chapter 5: overview of key findings, management implications and knowledge gaps. Report Section. State of Queensland.
Wolanski, Eric (2017) Bounded and unbounded boundaries – untangling mechanisms for estuarine-marine ecological connectivity: scales of m to 10,000 km – a review. Estuarine, Coastal and Shelf Science, 198 (B). pp. 378-392.
Waters, D.K., and Lewis, S.E. (2017) Calculating sediment trapping efficiency for reservoirs in series. In: Proceedings of the 22nd International Congress on Modelling and Simulation. pp. 1990-1996. From: MODSIM 2017: 22nd International Congress on Modelling and Simulation, 3-8 December 2017, Hobart, TAS, Australia.
Williams, Chris, and Templeman, Shelley (2017) Carpentaria Gold proposed EA amendments. Report. James Cook University, Townsville, QLD, Australia.
Wilkinson, Adam D., Collier, Catherine J., Flores, Florita, Langlois, Lucas, Ralph, Peter J., and Negri, Andrew P. (2017) Combined effects of temperature and the herbicide diuron on Photosystem II activity of the tropical seagrass Halophila ovalis. Scientific Reports, 7. 45404. pp. 1-11.
Wildermann, Natalie, Critchell, Kay, Fuentes, Marianna, Limpus, Colin J., Wolanski, Eric, and Hamann, Mark (2017) Does behaviour affect the dispersal of flatback post-hatchlings in the Great Barrier Reef? Royal Society Open Science, 4. pp. 1-15.
Wolanski, E., Andutta, F., Deleersnijder, E., Li, Y., and Thomas, C.J. (2017) The Gulf of Carpentaria heated Torres Strait and the Northern Great Barrier Reef during the 2016 mass coral bleaching event. Estuarine, Coastal and Shelf Science, 194. pp. 172-181.
Whitty, Jeff M., Keleher, James, Ebner, Brendan C., Gleiss, Adrian C., Simpfendorfer, Colin A., and Morgan, David L. (2017) Habitat use of a critically endangered elasmobranch, the largetooth sawfish Pristis pristis, in an intermittently flowing riverine nursery. Endangered Species Research, 34. pp. 211-227.
Waltham, Nathan, York, Paul, McKenna, Skye, Petus, Caroline, Devlin, Michelle, Rasheed, Michael, Campbell, Sean, Whinney, James, and Kane, Kevin (2017) Long term ambient water quality monitoring to support port management in the Great Barrier Reef World Heritage Area. In: Proceedings of the Australasian Coasts & Ports 2017 Conference. pp. 1125-1130. From: Australasian Coasts & Ports 2017 Conference: working with nature, 21-23 June 2017, Cairns, QLD, Australia.
Wulf, Peter, and Pearson, Richard G. (2017) Mossy stones gather more bugs: moss as habitat, nurseries and refugia for tropical stream invertebrates. Hydrobiologia, 790 (1). pp. 167-182.
Wells, Jaclyn, and Rasheed, Michael (2017) Port of Townsville Annual Seagrass Monitoring and Baseline Survey: September - October 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Wegscheidl, Carla J., Sheaves, Marcus, McLeod, Ian M., Hedge, Paul T., Gillies, Chris L., and Creighton, Colin (2017) Sustainable management of Australia's coastal seascapes: a case for collecting and communicating quantitative evidence to inform decision-making. Wetlands Ecology and Management, 25 (1). pp. 3-22.
Wallace, Jim, Waltham, Nathan, and Burrows, Damien (2017) A comparison of temperature regimes in dry-season waterholes in the Flinders and Gilbert catchments in northern Australia. Marine and Freshwater Research, 68 (4). pp. 650-667.
Welsh, Stuart A., Jerry, Dean R., Burrows, Damien W., and Rourke, Meaghan L. (2017) A new species of freshwater eel-tailed catfish of the genus Tandanus (Teleostei: Plotosidae) from coastal rivers of mid-northern New South Wales, Australia. Copeia, 105 (2). pp. 229-236.
Waterhouse, Jane, Brodie, Jon, Lewis, Stephen, and Audas, Donna-Marie (2016) Land-sea connectivity, ecohydrology and holistic management of the Great Barrier Reef and its catchments: time for a change. Ecohydrology and Hydrobiology, 16 (1). pp. 45-57.
Wenger, Amelia S., Williamson, David H., da Silva, Eduardo T., Ceccarelli, Daniela M., Browne, Nicola, Petus, Caroline, and Devlin, Michelle J. (2016) Effects of reduced water quality on coral reefs in and out of no-take marine reserves. Conservation Biology, 30 (1). pp. 142-153.
Waltham, Nathan (2016) Unravelling life history of the Inland Freshwater Crab Austrothelphusa transversa in seasonal tropical river catchments. Australian Zoologist, 38 (2). pp. 217-222.
Williams, Christopher, and Templeman, Shelley (2015) MMG Century Mine Sediment Quality Monitoring Program (SQMP) 2015 compliance assessment. Report. Centre for Tropical Water and Aquatic Ecosystem Research (TropWATER), Townsville, QLD, Australia.
Wilkinson, Adam D., Collier, Catherine J., Flores, Florita, and Negri, Andrew P. (2015) Acute and additive toxicity of ten photosystem-II herbicides to seagrass. Scientific Reports, 5. 17443. pp. 1-11.
Waltham, Nathan, McKenna, Skye, York, Paul, Devlin, Michelle, Campbell, Sean, Rasheed, Michael, Da Silva, Eduardo, Petus, Caroline, and Ridd, Peter (2015) Port of Mackay and Hay Point Ambient Marine Water Quality Monitoring Program (July 2014 to July 2015). Report. TropWATER, James Cook University, Townsville, QLD, Australia.
Wooldridge, Scott A., Brodie, Jon E., Kroon, Frederieke J., and Turner, Ryan D.R. (2015) Ecologically based targets for bioavailable (reactive) nitrogen discharge from the drainage basins of the Wet Tropics region, Great Barrier Reef. Marine Pollution Bulletin, 97 (1-2). pp. 262-272.
Waltham, Nathan J., and Sheaves, Marcus (2015) Expanding coastal urban and industrial seascape in the Great Barrier Reef World Heritage Area: critical need for coordinated planning and policy. Marine Policy, 57. pp. 78-84.
Weeks, Scarla J., Magno-Canto, Marites M., Jaine, Fabrice R.A., Brodie, Jon, and Richardson, Anthony J. (2015) Unique sequence of events triggers manta ray feeding frenzy in the Southern Great Barrier Reef, Australia. Remote Sensing, 7 (3). pp. 3138-3152.
Wallace, Jim, Waltham, Nathan, Burrows, Damien, and McJannet, David (2015) The temperature regimes of dry-season waterholes in tropical northern Australia: potential effects on fish refugia. Freshwater science, 34 (2). pp. 663-678.
Wilkinson, Adam D., Collier, Catherine J., Flores, Florita, Mercurio, Phil, O'Brien, Jake, Ralph, Peter J., and Negri, Andrew P. (2015) A miniature bioassay for testing the acute phytotoxicity of Photosystem II herbicides on seagrass. PLoS ONE, 10 (2). e0117541. pp. 1-17.
Wenger, Amelia S., Fabricius, Katharina E., Jones, Geoffrey P., and Brodie, Jon E. (2015) Effects of sedimentation, eutrophication and chemical pollution on coral reef fishes. In: Mora, Camilo, (ed.) Ecology of Fishes on Coral Reefs. Cambridge University Press, Cambridge, UK, pp. 145-153.
Waltham, Nathan J., and Sheaves, Marcus (2015) Expanding urban and industrial development in tropical seascapes necessitates green engineering and spatial planning thinking. Environmental Science and Technology, 49 (5). pp. 2598-2599.
Wenger, Amelia S., McCormick, Mark I., Endo, Geoff G.K., McLeod, Ian M., Kroom, Frederieke J., and Jones, Geoffrey P. (2014) Suspended sediment prolongs larval development in a coral reef fish. Journal of Experimental Biology, 217. pp. 1122-1128.
Wolanski, Eric, and Kingsford, Michael J. (2014) Oceanographic and behavioural assumptions in models of the fate of coral and coral reef fish larvae. Journal of the Royal Society Interface, 11 (98). 20140209. pp. 1-12.
Waterhouse, Jane, Brodie, Jon, Petus, Caroline, and Wolanski, Eric (2014) Hazard assessment for water quality threats to Torres Strait marine waters and ecosystems. In: Abstracts from the Society for Conservation Biology Oceania Conference. p. 102. From: Society for Conservation Biology Oceania Conference, 9-11 July 2014, Suva, Fiji.
Welsh, Stuart A., Jerry, Dean R., and Burrows, Damien W. (2014) A new species of freshwater eel-tailed catfish of the genus Tandanus (Teleostei: Plotosidae) from the wet tropics region of Eastern Australia. Copeia, 1. pp. 136-142.
Wood, Apanie, Booth, David T., and Limpus, Colin J. (2014) Sun exposure, nest temperature and loggerhead turtle hatchlings: implications for beach shading management strategies at sea turtle rookeries. Journal of Experimental Marine Biology and Ecology, 451. pp. 105-114.
Wolanski, Eric (2014) Estuaries of Australia in 2050 and Beyond. Estuaries of the World . Springer, Dordrecht, The Netherlands.
Waltham, Nathan J., Hughes, Jane M., and Davie, Peter J.F. (2014) Freshwater crabs occupying tropical north Queensland coastal creeks. Australian Zoologist, 37 (2). pp. 256-262.
Waltham, Nathan J., Reichelt-Brushett, Amanda, McCann, Damian, and Eyre, Bradley D. (2014) Water and sediment quality, nutrient biochemistry and pollution loads in an urban freshwater lake: balancing human and ecological services. Environmental Science Processes and Impacts, 16 (12). pp. 2804-2813.
Waltham, Nathan J., Burrows, Damien, Butler, Barry, and Wallace, Jim (2014) Water quality and fish refugia in riverine waterholes in northern Queensland potentially subject to irrigation development. In: Proceedings of the 7th Australian Stream Management Conference. pp. 150-155. From: 7th Australian Stream Management Conference: catchment to coast, 27-30 July 2014, Townsville, QLD, Australia.
Wood, Apanie L., Butler, James R.A., Sheaves, Marcus, and Wani, Jacob (2013) Sport fisheries: opportunities and challenges for diversifying coastal livelihoods in the Pacific. Marine Policy, 42. pp. 305-314.
Wolanski, Eric, Lambrechts, Jonathan, Thomas, Christopher, and Deleersnijder, Eric (2013) The net water circulation through Torres strait. Continental Shelf Research, 64. pp. 66-74.
Wallace, Jim, Macfarlane, Craig, McJannet, Dave, Ellis, Tim, Grigg, Andrew, and van Dijk, Albert (2013) Evaluation of forest interception estimation in the continental scale Australian Water Resources Assessment – Landscape (AWRA-L) model. Journal of Hydrology, 499. pp. 210-223.
Wenger, A.S., McCormick, M.I., McLeod, I.M., and Jones, G.P. (2013) Suspended sediment alters predator–prey interactions between two coral reef fishes. Coral Reefs, 32 (2). pp. 369-374.
Wallace, Jim, and McJannet, Dave (2013) How might Australian rainforest cloud interception respond to climate change? Journal of Hydrology, 481. pp. 85-95.
Wilson, James G., and Devlin, Michelle (2013) Nutrients, food web and tropho-dynamic processes. Estuarine, Coastal and Shelf Science , 135. pp. 1-4.
Wallace, James, and McJannet, Dave (2012) Climate change impacts on the water balance of coastal and montane rainforests in northern Queensland, Australia. Journal of Hydrology, 475. pp. 84-96.
Wolanski, Eric, Andutta, Fernando, and Delhez, Eric (2012) Estuarine hydrology. In: Bengtsson, Lars, Herschy, Reginald W., and Fairbridge, Rhodes W., (eds.) Encyclopedia of Lakes and Reservoirs. Encyclopedia of Earth Sciences Series . Springer-Verlag, pp. 238-249.
Waterhouse, J., Brodie, J., Lewis, S., and Mitchell, A. (2012) Quantifying the sources of pollutants in the Great Barrier Reef catchments and the relative risk to reef ecosystems. Marine Pollution Bulletin, 65 (4-9). pp. 394-406.
Webster, A.J., Bartley, R., Armour, J.D., Brodie, J.E., and Thorburn, P.J. (2012) Reducing dissolved inorganic nitrogen in surface runoff water from sugarcane production systems. Marine Pollution Bulletin, 65 (4-9). pp. 128-135.
Waterhouse, Jane, and Devlin, Michelle (2011) Managing Water Quality on the Great Barrier Reef: an overview of MTSRF research outputs, 2006-2010. Report. Reef and Rainforest Research Centre, Cairns.
Waterhouse, Jane, and Brodie, Jon (2011) Identification of Priority Pollutants and Priority Areas in the Great Barrier Reef catchments. Report. Reef and Rainforest Research Centre, Cairns, QLD.
Wolanski, Eric, McLusky, Donald, Laane, R.W.P.M., and Middleburg, J.J. (2011) Biogeochemistry. Treatise on Estuarine and Coastal Science, 5 . Academic Press, London, UK.
Wilkinson, Clive, and Brodie, Jon (2011) Catchment Management and Coral Reef Conservation. Global Coral Reef Monitoring Network and Reef and Rainforest Research Centre, Townsville, QLD, Australia.
Wolanski, Eric, McLusky, Donald, Simenstad, C., and Yanagi, T. (2011) Classification of Estuarine and Nearshore Coastal Ecosystems. Treatise on Estuarine and Coastal Science, 1 . Academic Press, London, UK.
Wolanski, Eric, McLusky, Donald, Chícharo, L., and Zalewski, M. (2011) Ecohydrology and Restoration. Treatise on Estuarine and Coastal Science, 10 . Academic Press, London, UK.
Wolanski, Eric, McLusky, Donald, van den Belt, M., and Costanza, R. (2011) Ecological Economics of Estuaries and Coasts. Treatise on Estuarine and Coastal Science, 12 . Academic Press, London, UK.
Wolanski, Eric, McLusky, Donald, Baird, D., and Mehta, A. (2011) Estuarine and Coastal Ecosystem Modeling. Treatise on Estuarine and Coastal Science, 9 . Academic Press, London, UK.
Wolanski, Eric, McLusky, Donald, Flemming, B.W., and Hansom, J.D. (2011) Estuarine and Coastal Geology and Geomorphology. Treatise on Estuarine and Coastal Science, 3 . Academic Press, London, UK.
Wolanski, Eric, McLusky, Donald, Heip, C.H.R., Middleburg, J.J., and Philippart, C.J.M. (2011) Functioning of Ecosystems at the Land–Ocean Interface. Treatise on Estuarine and Coastal Science, 7 . Academic Press, London, UK.
Wolanski, Eric, McLusky, Donald, and Schimmield, G. (2011) Geochemistry of Estuaries and Coasts. Treatise on Estuarine and Coastal Science, 4 . Academic Press, London, UK.
Wolanski, Eric, McLusky, Donald, Kennish, M.J., and Elliott, M. (2011) Human-Induced Problems (Uses and Abuses). Treatise on Estuarine and Coastal Science, 8 . Academic Press, London, UK.
Wolanski, Eric, McLusky, Donald, Kremer, H.H., and Pinckney, J.L. (2011) Management of Estuaries and Coasts. Treatise on Estuarine and Coastal Science, 11 . Academic Press, London, UK.
Wolanski, Eric, and McLusky, Donald (2011) Preface to the Treatise on Estuarine and Coastal Science. In: Wolanski, Eric, and McLusky, Donald, (eds.) Treatise on Estuarine and Coastal Science. Academic Press, London, UK, xxxvii-xl.
Wolanski, Eric, McLusky, Donald, Wilson, J.G., and Luczkovich, J.J. (2011) Trophic Relationships of Coastal and Estuarine Ecosystems. Treatise on Estuarine and Coastal Science, 6 . Academic Press, London, UK.
Wolanski, Eric, McLusky, Donald, Uncles, R.J., and Monismith, S.G. (2011) Water and Fine-Sediment Circulation. Treatise on Estuarine and Coastal Science, 2 . Academic Press, London, UK.
Waterhouse, Jane, Grundy, Mike, Gordon, Iain, Brodie, Jon, Eberhard, Rachel, and Yorkston, Hugh (2010) Managing the catchments of the Great Barrier Reef. In: Ferrier, Robert C., and Jenkins, Alan, (eds.) Handbook of Catchment Management. Wiley-Blackwell, Oxford, UK, pp. 350-375.
Wolanski, Eric, Brinson, Mark M., Cahoon, Donald R., and Perillo, Gerardo M.E. (2009) Coastal Wetlands: a synthesis. In: Perillo, Gerardo M.E., Wolanski, Eric, Cahoon, Donald R., and Brinson, Mark M., (eds.) Coastal Wetlands: an integrated ecosystem approach. Elsevier, Amsterdam, The Netherlands, pp. 1-62.
Wolanski, Eric, Martinez, Jonathan A., and Richmond, Robert H. (2009) Quantifying the impact of watershed urbanization on a coral reef: Maunalua Bay, Hawaii. Estuarine, Coastal and Shelf Science , 84 (2). pp. 259-268.
Webb, Alan (2008) Risk Assessment Model Development for Establishment Success and Impact of Non-native Freshwater Fishes in the Wet Tropics Bioregion, Northern Queensland, Australia. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.
Wolanski, Eric, and Richmond, Robert (2008) Estuary Restoration. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, UK, pp. 1422-1427.
Wolanski, Eric, Fabricius, Katharina E., Cooper, Timothy F., and Humphrey, Craig (2008) Wet season fine sediment dynamics on the inner shelf of the Great Barrier Reef. Estuarine, Coastal and Shelf Science , 77 (4). pp. 755-762.
White, Laurent, and Wolanski, Eric (2008) Flow separation and vertical motions in a tidal flow interacting with a shallow-water island. Estuarine, Coastal and Shelf Science , 77 (3). pp. 457-466.
Wolanski, E., Newton, A., Rabalais, N., and Legrand, C. (2008) Coastal zone management. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, pp. 630-637.
Webster, Tony, and Brodie, Jon (2008) Douglas Shire Fertiliser Trial and a Review of Nitrogen Fertiliser Research in Sugarcane Cultivation. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.
Wolanski, E., Chicharo, L., and Chicharo, M.A. (2008) Estuarine ecohydrology. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, pp. 1413-1422.
Webb, A.C. (2008) Spatial and temporal influences on population dynamics of a branchiuran ectoparasite, Argulus sp. A., in fresh waters of tropical northern Queensland, Australia. Crustaceana, 81 (9). pp. 1055-1067.
Wolanski, Eric, and Furukawa, Keita (2007) The oceanography of Palau. In: Kayanne, Hajime, Omori, Makoto, Fabricius, Katharina, Verheij, Eric, Colin, Patrick, Golbuu, Yimnang, and Yukihira, Hideki, (eds.) Coral Reefs of Palau. Palau International Coral Reef Center, Palau, pp. 59-72.
Wooldridge, Scott, Brodie, Jon, and Furnas, Miles (2006) Exposure of inner-shelf reefs to nutrient enriched runoff entering the Great Barrier Reef Lagoon: post-European changes and the design of water quality targets. Marine Pollution Bulletin, 52 (11). pp. 1467-1479.
Wolanski, Eric, Chicharo, Luís, Chicharo, M. Alexandra, and Morais, Pedro (2006) An ecohydrology model of the Guadiana Estuary (South Portugal). Estuarine, Coastal and Shelf Science , 70 (1-2). pp. 132-143.
Wolanski, E., Williams, D., and Hanert, E. (2006) The sediment trapping efficiency of the macro-tidal Daly Estuary, tropical Australia. Estuarine, Coastal and Shelf Science , 69 (1-2). pp. 291-298.
Wolanski, Eric (2006) The evolution time scale of macro-tidal estuaries: examples from the Pacific Rim. Estuarine, Coastal and Shelf Science , 66 (3-4). pp. 544-549.
Williams, David, Wolanski, Eric, and Spagnol, Simon (2006) Hydrodynamics of Darwin Harbour. In: Wolanski, Eric, (ed.) The Environment in Asia Pacific Harbours. Springer, Netherlands, pp. 461-476.
Wolanski, Eric (2006) Increasing trade and urbanisation of the Asia Pacific coast. In: Wolanski, Eric, (ed.) The Environment in Asia Pacific Harbours. Springer, Netherlands, pp. 1-13.
Wolanski, Eric (2006) Is harbour development ecologically sustainable? In: Wolanski, Eric, (ed.) The Environment in Asia Pacific Harbours. Springer, Netherlands, pp. 489-493.
Wolanski, Eric, McKinnon, A. David, Williams, David, and Alongi, Daniel M. (2006) An estuarine ecohydrology model of Darwin Harbour, Australia. In: Wolanski, Eric, (ed.) The Environment in Asia Pacific Harbours. Springer, Netherlands, pp. 477-488.
Wolanski, Eric, Fabricius, Katharina, Spagnol, Simon, and Brinkman, Richard (2005) Fine sediment budget on an inner-shelf coral-fringed island, Great Barrier Reef of Australia. Estuarine, Coastal and Shelf Science , 65 (1-2). pp. 153-158.
Wolanski, Eric, and De’ath, Glenn (2005) Predicting the impact of present and future human land-use on the Great Barrier Reef. Estuarine, Coastal and Shelf Science , 64 (2-3). pp. 504-508.
Wolanski, Eric, and Nhan, Nguyen Huu (2005) Oceanography of the Mekong River estuary. In: Chen, Zhongyuan, Saito, Yoshiki, and Goodbred Jr., Steven L., (eds.) Mega-deltas of Asia Geological Evolution and Human Impact. China Ocean Press, Beijing, China, pp. 113-115.
Wolanski, E., Colin, P., Naithani, J., Deleersnijder, E., and Golbuu, Y. (2004) Large amplitude, leaky, island-generated, internal waves around Palau, Micronesia. Estuarine, Coastal and Shelf Science , 60 (4). pp. 705-716.
Wolanski, Eric, Williams, David, Spagnol, Simon, and Chanson, Hubert (2004) Undular tidal bore dynamics in the Daly Estuary, Northern Australia. Estuarine, Coastal and Shelf Science , 60 (4). pp. 629-636.
Wolanski, Eric, Richmond, Robert H., and McCook, Laurence (2004) A model of the effects of land-based, human activities on the health of coral reefs in the Great Barrier Reef and in Fouha Bay, Guam, Micronesia. Journal of Marine Systems, 46 (1-4). pp. 133-144.
Wolanski, E., Spagnol, S., and Williams, D. (2004) The impact of damming the Ord River on the fine sediment budget in Cambridge Gulf, northwestern Australia. Journal of Coastal Research, 20 (3). pp. 801-807.
Wolanski, Eric, Brinkman, Richard, Spagnol, Simon, McAllister, Felicity, Steinberg, Craig, Skirving, William, and Deleersnijder, Eric (2003) Merging scales in models of water circulation: perspectives from the Great Barrier Reef. In: Lakhan, V.C., (ed.) Advances in Coastal Modeling. Elsevier Oceanography Series (67). Elsevier, pp. 411-429.
Wolanski, E., Richmond, R.H., Davis, G., Deleersnijder, E., and Leben, R.R. (2003) Eddies around Guam, an island in the Mariana Islands group. Continental Shelf Research, 23 (10). pp. 991-1003.
Wolanski, E., and Spagnol, S. (2003) Dynamics of the turbidity maximum in King Sound, tropical Western Australia. Estuarine, Coastal and Shelf Science , 56 (5-6). pp. 877-890.
Wolanski, Eric, Richmond, Robert H., Davis, Gerald, and Bonito, Victor (2003) Water and fine sediment dynamics in transient river plumes in a small, reef-fringed bay, Guam. Estuarine, Coastal and Shelf Science , 56 (5-6). pp. 1029-1040.
Wolanski, Eric, Richmond, Robert, McCook, Laurence, and Sweatman, Hugh (2003) Mud, marine snow and coral reefs. American Scientist, 91 (1). pp. 44-51.
Wolanski, Eric, Marshall, Katie, and Spagnol, Simon (2003) Nepheloid Layer Dynamics in Coastal Waters of the Great Barrier Reef, Australia. Journal of Coastal Research, 19 (3). pp. 748-752.
Wolanski, Eric (2003) Review work: "Fine Sediment Dynamics in the Marine Environment" by J.C. WInterwerp & C.Kranenburg. Journal of Coastal Research, 19 (4). pp. 1131-1132.
Werren, Garry, Panetta, Dane, and Goosem, Steve (2002) Environmental Weed risk assessment in the Wet Tropics: addressing problems of invasive alien species as a major threat to landscape integrity and health. In: Landscape Health of Queensland. pp. 71-86. From: Royal Society of Queensland Symposium, 2002, Brisbane, QLD, Australia.
Wolanski, Eric (2002) Information technology in marine science. In: Field, John G., Hempel , Gotthilf, and Summerhayes, Colin P., (eds.) Oceans 2020: Science Trends and the Challenge of Sustainability. Island Press, USA, pp. 251-252.
Werren, Garry, and Arthington, Angela (2002) The assessment of riparian vegetation as an indicator of stream condition, with particular emphasis on the rapid assessment of flow-related impacts. In: Landscape Health of Queensland. pp. 194-222. From: Royal Society of Queensland Symposium, 2002, Brisbane, QLD, Australia.
Werren, Garry L., and Burrows, Damien W. (1999) Review of environmental factors - Normanton Bridge. Report. James Cook University, Townsville, QLD, Australia.
Webb, Alan Charles (2003) The ecology of invasions of non-indigenous freshwater fishes in northern Queensland. PhD thesis, James Cook University.
Wolanski, Eric (2002) Damming the Mekong and Ord River estuaries. 7th International Coastal Symposium. p. 1. (Unpublished)
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Xu, Shaohua, He, Ziwen, Zhang, Zhang, Guo, Zixiao, Guo, Wuxia, Lyu, Haomin, Li, Jianfang, Yang, Ming, Du, Zhenglin, Huang, Yelin, Zhou, Renchao, Zhong, Cairong, Boufford, David E., Lerdau, Manuel, Wu, Chung-I, Duke, Norman C., The International Mangrove Consortiom, , and Shi, Suhua (2017) The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole-genome sequencing. National Science Review, 4 (5). pp. 721-734.
Xu, Hao, Newton, Alice, Wolanski, Eric, and Chen, Zhongyuan (2015) The fate of phosphorus in the Yangtze (Changjiang) Estuary, China, under multi-stressors: hindsight and forecast. Estuarine, Coastal and Shelf Science , 163 (Part B). pp. 1-6.
Xu, Hao, Wolanski, Eric, and Chen, Zhongyuan (2013) Suspended particulate matter affects the nutrient budget of turbid estuaries: modification of the LOICZ model and application to the Yangtze Estuary. Estuarine, Coastal and Shelf Science , 127. pp. 59-62.
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York, Paul, and Rasheed, Michael (2021) Annual Seagrass Monitoring in the Mackay-Hay Point Region – 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
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York, P.H., and Rasheed, M.A. (2017) Seagrass habitat of Cairns Harbour and Trinity Inlet: Annual Monitoring Report 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.
Yan, Yu-Bin, Duke, Norm C., and Sun, Mei (2016) Comparative analysis of the pattern of population genetic diversity in three Indo-West Pacific Rhizophora mangrove species. Frontiers in Plant Science, 7. 1434. pp. 1-17.
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