A

Archer, R., Talbot, L., Marshall, C., Hunter, C., Muir, B., Forester, T., Wren, L, Bedford, K., Johnson, M., Singleton, G., Singleton, B., Smith, T., Chartrand, K., Wright, J., and Hedge, P. (2023) AMSA Conference Indigenous Workshop Summary. Report. National Environmental Science Program, Cairns, QLD, Australia.

Albright, Rebecca, Hansson, Lina, Cooley, Sarah, Gattuso, Jean-Pierre, Marshall, Paul, Marshall, Nadine, Fletcher, Stephen, Haraldsson, Gunnar, and Hoegh-Guldberg, Ove (2023) Are we ready for ocean acidification? A framework for assessing and advancing policy readiness. Environmental Research Letters, 18. 041001.

Ani, Chinenye J., Smithers, Scott G., Lewis, Stephen, Baird, Mark, and Robson, Barbara (2023) eReefs modelling suggests Trichodesmium may be a major nitrogen source in the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 285. 108306.

Alderdice, Rachel, Pernice, Mathieu, Cardenas, Anny, Hughes, David J., Harrison, Peter L., Boulotte, Nadine, Chartrand, Katie, Kuehl, Michael, Suggett, David J., and Voolstra, Christian R. (2022) Hypoxia as a physiological cue and pathological stress for coral larvae. Molecular Ecology, 31 (2). pp. 571-587.

Armitage, Chris, Auld, Tony, Bradbury, Keith, Campbell, Heather, Clarkson, Bruce, Cox, Andrew, Dixon, Peter, Fitzsimons, James, Foran, Brendan, Howling, Gary, McLeod, Ian, Norrish, Shane, O'Connor, Patrick, O'Gorman, Dermot, Slater, Helen, and Wrigley, Damian (2021) The Darwin Agreement: a collaboration between Australian restoration organisations in support of the UN Decade on Ecosystem Restoration. Ecological Management and Restoration, 22 (3). pp. 220-222.

Adame, Maria, Waltham, Nathan, Iram, Naima, Farahani, Bahareh Shahrabi, Salinas, Cristian, Buford, Michelle, and Ronan, Mike (2021) Denitrification within the sediments and epiphyton of tropical macrophyte stands. Inland Waters, 11. 3. pp. 257-266.

Abhik, Santra, Hope, Pandora, Hendon, Harry H., Hutley, Lindsay B., Johnson, Stephanie, Drosdowsky, Wasyl, Brown, Josephine R, and Duke, Norman C. (2021) Influence of the 2015–2016 El Niño on the record‑breaking mangrove dieback along northern Australia coast. Scientific Reports, 11. 20411.

Abbott, Brett N., Wallace, Jim, Nicholas, David M., Karim, Fazlul, and Waltham, Nathan J. (2020) Bund removal to re-establish tidal flow, remove aquatic weeds and restore coastal wetland services—North Queensland, Australia. PLoS ONE, 15 (1). e0217531.

Arthington, Angela H., Pearson, Richard G., Godfrey, Paul C., Karim, Fazlul, and Wallace, Jim (2020) Integrating freshwater wetland science into planning for Great Barrier Reef sustainability. Aquatic Conservation: Marine and Freshwater Ecosystems, 30 (9). pp. 1727-1733.

Anthony, Kenneth R. N., Helmstedt, Kate J., Bay, Line K., Fidelman, Pedro, Hussey, Karen E., Lundgren, Petra, Mead, David, McLeod, Ian M., Mumby, Peter J., Newlands, Maxine, Schaffelke, Britta, Wilson, Kerrie A., and Hardisty, Paul E. (2020) Interventions to help coral reefs under global change – a complex decision challenge. PLoS ONE, 15 (8). e0236399.

Allard, Sarah M., Costa, Matthew T., Bulseco, Ashley N., Helfer, Véronique, Wilkins, Laetitia G.E., Hassenrück, Christiane, Zengler, Karsten, Zimmer, Martin, Erazo, Natalia, Mazza Rodrigues, Jorge L., Duke, Norman, Melo, Vânia M.M., Vanwonterghem, Inka, Junca, Howard, Makonde, Huxley M., Jiménez, Diego Javier, Tavares, Tallita C.L., Fusi, Marco, Daffonchio, Daniele, Duarte, Carlos M., Peixoto, Raquel S., Rosado, Alexandre S., Gilbert, Jack A., and Bowman, Jeff (2020) Introducing the mangrove microbiome initiative: identifying microbial research priorities and approaches to better understand, protect, and rehabilitate mangrove ecosystems. mSystems, 5 (5). e0065820.

Ayling, T., Ayling, A., Chartrand, K.M., and Rasheed, M.A. (2020) Port of Abbot Point Ambient Coral Monitoring Surveys: 2018-2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Ayling, T., Ayling, A., Chartrand, K.M., and Rasheed, M.A. (2020) Ports of Mackay and Hay Point Ambient Coral Monitoring Surveys: 2018-2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Adams, Matthew P., Koh, Edwin J.Y., Vilas, Maria P., Collier, Catherine J., Lambert, Victoria M., Sisson, Scott A., Quiroz, Matias, McDonald-Madden, Eve, McKenzie, Len J., and O'Brien, Katherine R. (2020) Predicting seagrass decline due to cumulative stressors. Environmental Modelling & Software, 130. 104717.

Amir, A. Aldrie, and Duke, Norman C. (2019) Distinct characteristics of canopy gaps in the subtropical mangroves of Moreton Bay, Australia. Estuarine, Coastal and Shelf Science, 222. pp. 66-80.

Andrisoa, Aladin, Lartaud, Franck, Rodellas, Valentí, Neveu, Ingrid, and Stieglitz, Thomas C. (2019) Enhanced growth rates of the Mediterranean mussel in a coastal lagoon driven by groundwater inflow. Frontiers in Marine Science, 6. 753.

Arthington, Angela H., Mackay, Steve J., Ronan, Mike, James, Cassandra S., and Kennard, Mark J. (2019) Freshwater wetlands of Moreton Bay Quandamooka and catchments: Biodiversity, ecology, threats and management. In: Tibbetts, Ian R., Rothlisberg, Peter C., Neil, David C., Homburg, Tamara A., Brewer, David T., and Arthington, Angela H., (eds.) Moreton Bay Quandamooka & Catchment: Past, present, and future. The Moreton Bay Foundation, Brisbane, Queensland, Australia, pp. 319-333.

Adame, Maria Fernanda, Arthington, Angela, Waltham, Nathan, Hasan, Syezlin, Selles, Amelia, and Ronan, Mike (2019) Managing threats and restoring wetlands within catchments of the Great Barrier Reef, Australia. Aquatic Conservation: marine and freshwater ecosystems, 29. pp. 829-839.

Adame, M.F., Franklin, H., Waltham, N.J., Rodriguez, S., Kavehei, E., Turschwell, M.P., Balcombe, S.R., Kaniewski, P., Burford, M.A., and Ronan, M. (2019) Nitrogen removal by tropical floodplain wetlands through denitrification. Marine and Freshwater Research, 70. pp. 1513-1521.

Ayling, T., Ayling, A., Chartrand, K.M., and Rasheed, M.A. (2019) Ports of Mackay and Hay Point Ambient Coral Monitoring Surveys: 2017-2018. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Andrisoa, Aladin, Stieglitz, Thomas C., Rodellas, Valenti, and Raimbault, Patrick (2019) Primary production in coastal lagoons supported by groundwater discharge and porewater fluxes inferred from nitrogen and carbon isotope signatures. Marine Chemistry, 210. pp. 48-60.

Adams, Matthew P., Collier, Catherine J., Uthicke, Sven, Ow, Yan X., Langlois, Lucas, and O'brien, Katherine R. (2017) Model fit versus biological relevance: evaluating photosynthesis-temperature models for three tropical seagrass species. Scientific Reports, 7. 39930. pp. 1-12.

Albert, Simon, Saunders, Megan I., Roelfsema, Chris M., Leon, Javier X., Johnstone, Elizabeth, Mackenzie, Jock R., Hoegh-Guldberg, Ove, Grinham, Alistair R., Phinn, Stuart R., Duke, Norman C, Mumby, Peter J., Kovacs, Eva, and Woodroffe, Colin D. (2017) Winners and losers as mangrove, coral and seagrass ecosystems respond to sea-level rise in Solomon Islands. Environmental Research Letters, 12 (9). 094009. pp. 1-11.

Aschenbroich, Adélaïde, Michaud, Emma, Stieglitz, Thomas, Fromard, Francois, Gardel, Antoine, Tavares, Marcos, and Thouzeau, Gérard (2016) Brachyuran crab community structure and associated sediment reworking activities in pioneer and young mangroves of French Guiana, South America. Estuarine, Coastal and Shelf Science, 182 (Part A). pp. 60-71.

Albright, Rebecca, Anthony, Kenneth R.N., Baird, Mark, Beeden, Roger, Byrne, Maria, Collier, Catherine, Dove, Sophie, Fabricius, Katharina, Hoegh-Guldberg, Ove, Kelly, Ryan P., Lough, Janice, Mongin, Mathieu, Munday, Philip L., Pears, Rachel J., Russell, Bayden D., Tilbrook, Bronte, and Abal, Eva (2016) Ocean acidification: linking science to management solutions using the Great Barrier Reef as a case study. Journal of Environmental Management, 182. pp. 641-650.

Abrantes, Kátya G., Johnston, Ross, Connolly, Rod M., and Sheaves, Marcus (2015) Importance of mangrove carbon for aquatic food webs in wet–dry tropical estuaries. Estuaries and Coasts, 38 (1). pp. 383-399.

Arthington, Angela A., Godfrey, Paul C., Pearson, Richard G., Karim, Fazlul, and Wallace, Jim (2015) Biodiversity values of remnant freshwater floodplain lagoons in agricultural catchments: evidence for fish of the Wet Tropics bioregion, northern Australia. Aquatic Conservation: marine and freshwater ecosystems , 25 (3). pp. 336-352.

Amies, Rachel, Bryant, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report August 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Amies, R.L., McCormack, C.V., and Rasheed, M.A. (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report July 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Amies, R.L., McCormack, C.V., and Rasheed, M.A. (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report June 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Amies, Rachel, McCormack, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report May 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Alvarez-Romero, Jorge G., Devlin, Michelle, da Silva, Eduardo Teixeira, Petus, Caroline, Ban, Natalie C., Pressey, Robert L., Kool, Johnathan, Roberts, Jason J., Cerdeira-Estrada, Sergio, Wenger, Amelia S., and Brodie, Jon (2013) A novel approach to model exposure of coastal-marine ecosystems to riverine flood plumes based on remote sensing techniques. Journal of Environmental Management, 119. pp. 194-207.

Amies, Rachel, McCormack, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report April 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Amies, Rachel, McCormack, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report March 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Augé, Amélie A., Maughan, Mirjam, Pressey, Robert L., Brodie, Jon, Dale, Allan, and Yorkston, Hugh (2013) Spatially explicit scenarios for conservation planning in the Great Barrier Reef coastal zone, Australia. In: Proceedings of the CoastGIS Conference 2013: monitoring and adapting to change on the coast. pp. 179-182. From: CoastGIS 2013: 11th International Symposium for GIS and Computer Cartography for Coastal Zone Management, 18-21 June 2013, Victoria, BC, Canada.

Alquezar, Ralph, Glendenning, Lionel, and Costanzo, Simon (2013) The use of the brown macroalgae, Sargassum flavicans, as a potential bioindicator of industrial nutrient enrichment. Marine Pollution Bulletin, 77 (1-2). pp. 140-146.

Aswani, Shankar, Christie, Patrick, Muthiga, Nyawira A., Mahon, Robin, Primavera, Jurgenne H., Cramer, Lori A., Granek, Elise F., Kennedy, Chris J., Wolanski, Eric, and Hacker, Sally (2012) The way forward with ecosystem-based management in tropical contexts: reconciling with existing management systems. Marine Policy, 36 (1). pp. 1-10.

Andutta, Fernando P., Ridd, Peter V., and Wolanski, Eric (2011) Dynamics of hypersaline coastal waters in the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 94 (4). pp. 299-305.

Amos, Kathryn J., Croke, Jacky C., Hughes, Andrew O., Chapman, Joanne, Takken, Ingrid, and Lymburner, Leo (2008) A catchment-scale assessment of anabranching in the 143 000 km2 Fitzroy River catchment, north-eastern Australia. Earth Surface Processes and Landforms, 33 (8). pp. 1222-1241.

B

Bainbridge, Zoe T., Olley, Jon M., Lewis, Stephen E., Stevens, Tom, and Smithers, Scott G. (2024) Tracing sources of inorganic suspended particulate matter in the Great Barrier Reef lagoon, Australia. Scientific Reports, 14. 15651.

Bradley, Michael, Dubuc, Alexia, Piggott, Camilla V.H., Sambrook, Katie, Hoey, Andrew S., Depczynski, Martial, Langlois, Tim J., Gagliano, Monica, Wilson, Shaun K., Cure, Katherine, Holmes, Thomas H., Moore, Glenn I., Travers, Michael, Baker, Ronald, Nagelkerken, Ivan, and Sheaves, Marcus (2024) The fish–mangrove link is context dependent: Tidal regime and reef proximity determine the ecological role of tropical mangroves. Fish and Fisheries, 25 (3). pp. 523-541.

Burrows, Ryan M., Garzon-Garcia, Alexandra, Burton, Joanne, Lewis, Stephen E., Gruber, Renee K., Brodie, Jon E., and Burford, Michele A. (2023) Factors affecting broadscale variation in nearshore water-column organic carbon concentrations along the Great Barrier Reef. Regional Studies in Marine Science, 63. 103032.

Buñuel, Xavier, Alcoverro, Teresa, Boada, Jordi, Zinkunegi, Leire, Smith, Timothy M., Barrera, Anaïs, Casas, Marc, Farina, Simone, Pérez, Marta, Romero, Javier, Arthur, Rohan, and Pagès, Jordi F. (2023) Indirect grazing-induced mechanisms contribute to the resilience of Mediterranean seagrass meadows to sea urchin herbivory. Oikos, 2023 (6). e09520.

Bainbridge, Zoe, Olley, Jon, Wilkinson, Scott, Bartley, Rebecca, Lewis, Stephen, Dougall, Cameron, Khan, Sana, Kuhnert, Petra, and Burton, Joanne (2023) Refining fine sediment source identification through integration of spatial modelling, concentration monitoring and source tracing: A case study in the Great Barrier Reef catchments. Science of the Total Environment, 10. 164731.

Bremner, Julie, Petus, Caroline, Dolphin, Tony, Hawes, Jon, Beguet, Benoît, and Devlin, Michelle J. (2023) A Seagrass Mapping Toolbox for South Pacific Environments. Remote Sensing, 15 (3). 834.

Bradley, Michael, Sheaves, Marcus, and Waltham, Nathan J. (2023) Urban-industrial seascapes can be abundant and dynamic fish habitat. Frontiers in Marine Science, 9. 1034039.

Binks, Oliver, Cernusak, Lucas A., Liddell, Michael, Bradford, Matt, Coughlin, Ingrid, Bryant, Callum, Palma, Ana C., Hoffmann, Luke, Alam, Iftakharul, Carle, Hannah J., Rowland, Lucy, Oliveira, Rafael S., Laurance, Susan G.W., Mencuccini, Maurizio, and Meir, Patrick (2023) Vapour pressure deficit modulates hydraulic function and structure of tropical rainforests under nonlimiting soil water supply. New Phytologist, 240 (4). pp. 1405-1420.

Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Wang, Juntao, Shen, Jupei, Hou, Enqing, Rezaei Rashti, Mehran, Huang, Qiaoyun, Bainbridge, Zoe, and Stevens, Tom (2023) The origin of suspended particulate matter in the Great Barrier Reef. Nature Communications, 14. 5629.

Barrios-Garrido, Hector, Arias-Ortiz, Angela, Balladares, Clemente, Espinoza-Rodriguez, Ninive, Garcia-Cruz, Marco, Gonzalez, Maria F., Pulido-Petit, Graciela, Rojas-Cañizales, Daniela, Rondon-Medicci, Maria, Vernet, Pedro, and Wildermann, Natalie E. (2022) Records of Olive Ridley Marine Turtles (Lepidochelys olivacea Eschscholtz 1829) in Venezuelan Waters: A Review of Historical Data Sets and Threats. Chelonian Conservation and Biology, 21 (1). pp. 136-140.

Bigal, Eyal, Galili, Ori, van Rijn, Itai, Rosso, Massimiliano, Cleguer, Christophe, Hodgson, Amanda, Scheinin, Aviad, and Tchernov, Dan (2022) Reduction of Species Identification Errors in Surveys of Marine Wildlife Abundance Utilising Unoccupied Aerial Vehicles (UAVs). Remote Sensing, 14 (16). 4118.

Bell-James, Justine, Fitzsimons, James A., Gillies, Chris L., Shumway, Nicole, and Lovelock, Catherine E. (2022) Rolling covenants to protect coastal ecosystems in the face of sea-level rise. Conservation Science and Practice, 4 (1). e593.

Bahadori, Mohammad, Wang, Jun-Tao, Shen, Ju-pei, Lewis, Stephen, Rezaei Rashti, Mehran, and Chen, Chengrong (2022) Soil organic matter and geochemical characteristics shape microbial community composition and structure across different land uses in an Australian wet tropical catchment. Land Degradation and Development, 33 (6). pp. 817-831.

Boström-Einarsson, Lisa, Martínez-Baena, Francisco, Diggles, Ben, Firby, Lauren, and McLeod, Ian M. (2022) An ecological assessment of Australia's first community oyster gardens. Ecological Management and Restoration, 23 (3). pp. 244-251.

Bergstrom, Dana M., Wienecke, Barbara C., van der Hoff, John, Hughes, Lesley, Lindenmayer, David, Ainsworth, Tracy, Baker, Christopher M., Bland, Lucie, Bowman, David, Brooks, Shaun T., Canadell, Josep G., Constable, Andrew J., Dafforn, Katherine A., Depledge, Michael H., Dickson, Catherine R., Duke, Norman, Helmstedt, Kate J., Holz, Andres, Johnson, Craig, Mcgeoch, Melodie, Melbourne-thomas, Jessica, Morgain, Rachel, Nicholson, Emily, Prober, Suzanne, Raymond, Ben, Ritchie, Euan, Robinson, Sharon, Ruthrof, Katinka X., Setterfield, Samantha A., Sgro, Carla M., Stark, Jonathan S., Travers, Toby, Trebilco, Rowan, Ward, Delphi F.L., Wardle, Glenda, Williams, Kristen, Zylstra, Phillip J., and Shaw, Justine D. (2021) Ecosystem collapse from the tropics to the Antarctic: an assessment and response framework. Global Change Biology, 27. pp. 1692-1703.

Bergstrom, Dana, Wienecke, Barbara C., van den Hoff, John, Hughes, Lesley, Lindenmayer, David B., Ainsworth, Tracy D., Baker, Christopher M., Bland, Lucie, Bowman, David M.J.S., Brooks, Shaun T., Canadell, Josep G., Constable, Andrew J., Dafforn, Katherine, Depledge, Michael H., Dickson, Catherine, Duke, Norman C., Helmstedt, Kate J., Holz, Andres, Johnson, Craig R., McGeoch, Melodie A., Melbourne-thomas, Jessica, Morgain, Rachel, Nicholson, Emily, Prober, Suzanne M., Raymond, Ben, Ritchie, Euan G., Robinson, Sharon A., Ruthrof, Katinka X., Setterfield, Samantha A., Sgro, Carla M., Stark, Jonathan S., Travers, Toby, Trebilco, Rowan, Ward, Delphi F.L., Wardle, Glenda M., Williams, Kristen J., Zylstra, Phillip J., and Shaw, Justine D. (2021) Combating ecosystem collapse from the tropics to the Antarctic. Global Change Biology, 27. pp. 1692-1703.

Boyero, Luz, López-Rojo, Naiara, Pérez, Javier, Tonin, Alan M., Correa-Araneda, Francisco, Davis, Aaron, and Pearson, Richard G. (2021) Effects of gamma irradiation on instream leaf litter decomposition. Hydrobiologia, 848 (21). pp. 5223-5232.

Barrios-Garrido, Hector, De Turris-Morales, Kareen, and Espinoza-Rodriguez, Ninive Edilia (2021) Guiana Dolphin (Sotalia guianensis) in the Maracaibo Lake System, Venezuela: conservation, threats, and population overview. Frontiers in Marine Science, 7. 594021.

Boyero, Luz, López-Rojo, Naiara, Tonin, Alan M., Pérez, Javier, Correa-Araneda, Francisco, Pearson, Richard G., Bosch, Jaime, Albariño, Ricardo J., Anbalagan, Sankarappan, Barmuta, Leon A., Basaguren, Ana, Burdon, Francis J., Caliman, Adriano, Callisto, Marcos, Calor, Adolfo R., Campbell, Ian C., Cardinale, Bradley J., Jesús Casas, J., Chará-Serna, Ana M., Chauvet, Eric, Ciapała, Szymon, Colón-Gaud, Checo, Cornejo, Aydeé, Davis, Aaron M., Degebrodt, Monika, Dias, Emerson S., Díaz, Maria, Douglas, Michael M., Encalada, Andrea C., Figueroa, Ricardo, Flecker, Alexander S., Fleituch, Tadeusz, García, Erica A., García, Gabriela, García, Pavel E., Gessner, Mark O., Gómez, Jesús E., Gómez, Sergio, Gonçalves, Jose F., Graça, Manuel A.S., Gwinn, Daniel C., Hall, Robert O., Hamada, Neusa, Hui, Cang, Imazawa, Daichi, Iwata, Tomoya, Kariuki, Samuel K., Landeira-Dabarca, Andrea, Laymon, Kelsey, Leal, María, Marchant, Richard, Martins, Renato T., Masese, Frank O., Maul, Megan, McKie, Brendan G., Medeiros, Adriana O., Erimba, Charles M.M’, Middleton, Jen A., Monroy, Silvia, Muotka, Timo, Negishi, Junjiro N., Ramírez, Alonso, Richardson, John S., Rincón, José, Rubio-Ríos, Juan, dos Santos, Gisele M., Sarremejane, Romain, Sheldon, Fran, Sitati, Augustine, Tenkiano, Nathalie S.D., Tiegs, Scott D., Tolod, Janine R., Venarsky, Michael, Watson, Anne, and Yule, Catherine M. (2021) Impacts of detritivore diversity loss on instream decomposition are greatest in the tropics. Nature Communications, 12 (1). 3700.

Boyero, Luz, Pérez, Javier, López-Rojo, Naiara, Tonin, Alan M., Correa-Araneda, Francisco, Pearson, Richard G., Bosch, Jaime, Albariño, Ricardo J., Anbalagan, Sankarappan, Barmuta, Leon A., Beesley, Leah, Burdon, Francis J., Caliman, Adriano, Callisto, Marcos, Campbell, Ian C., Cardinale, Bradley J., Jesús Casas, J., Chará-Serna, Ana M., Ciapała, Szymon, Chauvet, Eric, Colón-Gaud, Checo, Cornejo, Aydeé, Davis, Aaron M., Degebrodt, Monika, Dias, Emerson S., Díaz, María E., Douglas, Michael M., Elosegi, Arturo, Encalada, Andrea C., De Eyto, Elvira, Figueroa, Ricardo, Flecker, Alexander S., Fleituch, Tadeusz, Frainer, André, França, Juliana S., García, Erica A., García, Gabriela, García, Pavel, Gessner, Mark O., Giller, Paul S., Gómez, Jesús E., Gómez, Sergio, Gonçalves, Jose F., Graça, Manuel A.S., Hall, Robert O., Hamada, Neusa, Hepp, Luiz U., Hui, Cang, Imazawa, Daichi, Iwata, Tomoya, Junior, Edson S.A., Kariuki, Samuel, Landeira-Dabarca, Andrea, Leal, María, Lehosmaa, Kaisa, M’Erimba, Charles, Marchant, Richard, Martins, Renato T., Masese, Frank O., Camden, Megan, McKie, Brendan G., Medeiros, Adriana O., Middleton, Jen A., Muotka, Timo, Negishi, Junjiro N., Pozo, Jesús, Ramírez, Alonso, Rezende, Renan S., Richardson, John S., Rincón, José, Rubio-Ríos, Juan, Serrano, Claudia, Shaffer, Angela R., Sheldon, Fran, Swan, Christopher M., Tenkiano, Nathalie S.D., Tiegs, Scott D., Tolod, Janine R., Vernasky, Michael, Watson, Anne, Yegon, Mourine J., and Yule, Catherine M. (2021) Latitude dictates plant diversity effects on instream decomposition. Science Advances, 7 (13). eabe7860.

Bainbridge, Zoe, Lewis, Stephen, Stevens, Thomas, Petus, Caroline, Lazarus, Emily, Gorman, Jessica, and Smithers, Scott (2021) Measuring sediment grain size across the catchment to reef continuum: improved methods and environmental insights. Marine Pollution Bulletin, 168. 112339.

Baker, Ronald, and Sheaves, Marcus (2021) Predation in littoral habitats is a complex process: Comment on Whitfield (2020). Marine Ecology - Progress Series, 662. pp. 205-208.

Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Boyd, Sue, Rashti, Mehran, Esfandbod, Maryam, Van Zwieten, Lukas, and Kuzyakov, Yakov (2021) Soil organic matter formation is controlled by the chemistry and bioavailability of organic carbon inputs across different land uses. Science of the Total Environment, 770. 145307.

Brodie, Jon E. (2021) Water Quality Studies in the Great Barrier Reef region and links to management, 1890 – 2016. Report. TropWATER, Townsville, QLD, Australia.

Butler, Barry, Pearson, Richard G., and Birtles, R. Alastair (2021) Water-quality and ecosystem impacts of recreation in streams: Monitoring and management. Environmental Challenges, 5. 100328.

Bostrom Einarsson, Lisa, Babcock, Russel C., Bayraktarov, Elisa, Ceccarelli, Daniella, Cook, Nathan, Ferse, Sebastian C.A., Hancock, Boze, Harrison, Peter, Hein, Margaux, Shaver, Elizabeth, Smith, Adam, Suggett, David, Stewart-sinclair, Phoebe J., Tardi, Tali, and McLeod, Ian M. (2020) Coral restoration – a systematic review of current methods, successes, failures and future directions. PLoS ONE, 15 (1). e0226631.

Benson, Lee, and Pearson, Richard G. (2020) Dynamics of organic material and invertebrates in a tropical headwater stream. Hydrobiologia, 847 (1). pp. 121-136.

Baker, Ronald, Taylor, Matthew D., Able, Kenneth W., Beck, Michael W., Cebrian, Just, Colombano, Denise D., Connolly, Rod M., Currin, Carolyn, Deegan, Linda A., Feller, Ilka C., Gilby, Ben L., Kimball, Matthew E., Minello, Thomas J., Rozas, Lawrence P., Simenstad, Charles, Turner, R. Eugene, Waltham, Nathan J., Weinstein, Michael P., Ziegler, Shelby L., zu Ermgassen, Philine S.E., Alcott, Caitlin, Alford, Scott B., Barbeau, Myriam A., Crosby, Sarah C., Dodds, Kate, Frank, Alyssa, Goeke, Janelle, Goodridge Gaines, Lucy A., Hardcastle, Felicity E., Henderson, Christopher J., James, W. Ryan, Kenworthy, Matthew D., Lesser, Justin, Mallick, Debbrota, Martin, Charles W., McDonald, Ashley E., McLuckie, Catherine, Morrison, Blair H., Nelson, James A., Norris, Gregory S., Ollerhead, Jeff, Pahl, James W., Ramsden, Sarah, Rehage, Jennifer S., Reinhardt, James F., Rezek, Ryan J., Risse, L. Mark, Smith, Joseph A.M., Sparks, Eric L., and Staver, Lorie W. (2020) Fisheries rely on threatened salt marshes. Science, 370 (6517). pp. 670-671.

Baptista, Vânia, Leitão, Francisco, Morais, Pedro, Teodósio, Maria Alexandra, and Wolanski, Eric (2020) Modelling the ingress of a temperate fish larva into a nursery coastal lagoon. Estuarine, Coastal and Shelf Science, 235. 106601.

Bryant, C.V., Wilkinson, J.S., Chartrand, K.M., van de Wetering, C., and Rasheed, M.A. (2020) Port of Townsville Seagrass Monitoring Program: Interim report: April 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bayraktarov, Elisa, Brisbane, Shantala, Hagger, Valerie, Smith, Carter S., Wilson, Kerrie A., Lovelock, Catherine E., Gillies, Chris, Steven, Andrew D.L., and Saunders, Megan I. (2020) Priorities and motivations of marine coastal restoration research. Frontiers in Marine Science, 7. 484.

Buelow, Christina A., and Waltham, Nathan J. (2020) Restoring tropical coastal wetland water quality: ecosystem service provisioning by a native freshwater bivalve. Aquatic Sciences, 82. 77.

Barrios-Garrido, H., Becker, P., Bjorndal, K.A., Bolten, A.B., Diez, C.E., Espinoza-rodriguez, N., Fastigi, M., Gray, J., Harrison, E., Hart, K.A., Meylan, A., Meylan, P., Montiel-villalobos, M.G., Morales, F., Nava, M., Palmar, J., Petit-Rodriguez, M.J., Richardson, P., Rodriguez-Clark, K.M., Rojas-Canizales, D., Sandoval, M.G., Valverde, R.A., van Dam, R., Walker, J.T., Wildermann, N., and Hamann, M. (2020) Sources and movements of marine turtles in the Gulf of Venezuela: regional and local assessments. Regional Studies in Marine Science, 36. 101318.

Baker, Ronald, and Waltham, Nathan (2020) Tethering mobile aquatic organisms to measure predation: a renewed call for caution. Journal of Experimental Marine Biology and Ecology, 523. 151270.

Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Rashti, Mehran Rezaei, Cook, Freeman, Parnell, Andrew, Esfandbod, Maryam, and Stevens, Thomas (2020) Tracing the sources of sediment and associated particulate nitrogen from different land uses in the Johnstone River catchment, Wet Tropics, northeastern Australia. Marine Pollution Bulletin, 157. 111344.

Barrios-Garrido, Héctor A., Montiel-Villalobos, María G., Palmar, Jordano, and Rodríguez-Clark, Kathryn M. (2020) Wayuú capture of green turtles, Chelonia mydas, in the Gulf of Venezuela: a major Caribbean artisanal turtle fishery. Ocean and Coastal Management, 188. 105123.

Bauer-Civiello, Anne, Critchell, Kay, Hoogenboom, Mia, and Hamann, Mark (2019) Input of plastic debris in an urban tropical river system. Marine Pollution Bulletin, 144. pp. 235-242.

Bayraktarov, Elisa, Stewart-Sinclair, Phoebe J., Brisbane, Shantala, Boström‐Einarsson, Lisa, Saunders, Megan I., Lovelock, Catherine E., Possingham, Hugh P., Mumby, Peter J., and Wilson, Kerrie A. (2019) Motivations, success, and cost of coral reef restoration. Restoration Ecology, 27 (5). pp. 981-991.

Brodie, Jon, and Landos, Matt (2019) Pesticides in Queensland and Great Barrier Reef waterways - potential impacts on aquatic ecosystems and the failure of national management. Estuarine, Coastal and Shelf Science, 230. 106447.

Bryant, C.V., Wells, J.N., and Rasheed, M.A. (2019) Port of Townsville Annual Seagrass Monitoring Survey: October 2018. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Baptista, Vânia, Morais, Pedro, Cruz, Joana, Castanho, Sara, Ribeiro, Laura, Pousão-Ferreira, Pedro, Leitão, Francisco, Wolanski, Eric, and Teodósio, Maria Alexandra (2019) Swimming abilities of temperate pelagic fish larvae prove that they may control their dispersion in coastal areas. Diversity, 11 (10). 185.

Burrows, Damien, Purandare, Jemma, Bay, Line, Cook, Nathan, Koopman, Danielle, Long, Suzanne, Lundgren, Petra, Mead, David, Morris, Sheriden, Newlands, Maxine, Roth, Christian, Wachenfeld, David, Smith, Adam K., and McLeod, Ian M. (2019) Symposium report: Great Barrier Reef restoration symposium, 2018. Ecological Management and Restoration, 20 (2). pp. 175-178.

Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Rashti, Mehran Rezaei, Cook, Freeman, Parnell, Andrew, Esfandbod, Maryam, and Boyd, Sue (2019) A novel approach of combining isotopic and geochemical signatures to differentiate the sources of sediments and particulate nutrients from different land uses. Science of the Total Environment, 655. pp. 129-140.

Barrios-Garrido, Hector (2018) Las tortugas marinas y los pueblos Wayuú: una historia de ritos, creencias y usos tradicionales. Ecotropicos, 30. e0002.

Boström‐Einarsson, Lisa, Ceccarelli, Daniela, Babcock, Russell C., Bayraktarov, Elisa, Cook, Nathan, Harrison, Peter, Hein, Margaux, Shaver, Elizabeth, Smith, Adam, Stewart-Sinclair, Phoebe J., Vardi, Tali, and McLeod, Ian M. (2018) Coral restoration in a changing world - a global synthesis of methods and techniques. Report. Reef and Rainforest Research Centre Ltd, Cairns.

Bostrom Einarsson, Lisa (2018) Dead enough? The thorny issue of culling crown-of-thorns starfish using vinegar injections. A reply to Dumas et al. The chaotic history of using vinegar injections to control Acanthaster spp. populations, Ocean & Coastal management, 2018, Volume 165, Page number 434–435. Ocean & Coastal Management, 165. pp. 436-437.

Bostrom Einarsson, Lisa, Bonin, Mary C., Moon, Steve, and Firth, Scott (2018) Environmental impact monitoring of household vinegar-injections to cull crown-of-thorns starfish, Acanthaster spp. Ocean & Coastal Management, 155. pp. 83-89.

Bainbridge, Z., Lewis, S., Bartley, R., Fabricius, K., Collier, C., Waterhouse, J., Garzon-Garcia, A., Robson, B., Burton, J., Wenger, A., and Brodie, J. (2018) Fine sediment and particulate organic matter: a review and case study on ridge-to-reef transport, transformations, fates, and impacts on marine ecosystems. Marine Pollution Bulletin, 135. pp. 1205-1220.

Bryant, Catherine, Carter, Alex, Chartrand, Katie, Wells, Jaclyn, and Rasheed, Michael (2018) Gladstone Healthy Harbour Partnership 2018 Report Card, ISP011: seagrass. Report. James Cook University, Cairns, QLD, Australia.

Burndred, Kate R., Cockayne, Bernie J., Donaldson, James A., and Ebner, Brendan C. (2018) Natural flow events influence the behaviour and movement patterns of eel-tailed catfish (Tandanus tandanus) in a subtropical Queensland river. Australian Journal of Zoology, 66 (3). pp. 185-194.

Baker, Ronald, Bradley, Michael, Freddi, Stefano, Abrantes, Katya, Barnett, Adam, and Sheaves, Marcus (2018) Non-lethal aging of tropical catch-and-release sport fishery species. Fisheries Research, 207. pp. 110-117.

Buelow, Christina A., Baker, Ronald, Reside, April E., and Sheaves, Marcus (2018) Nutrient subsidy indicators predict the presence of an avian mobile-link species. Ecological Indicators, 89. pp. 507-515.

Buelow, Christina A., Reside, April E., Baker, Ronald, and Sheaves, Marcus (2018) Stable isotopes reveal opportunistic foraging in a spatiotemporally heterogeneous environment: bird assemblages in mangrove forests. PLoS ONE, 13 (11). e0206145.

Bejannin, Simon, van Beek, Pieter, Stieglitz, Thomas, Souhaut, Marc, and Tamborski, Joseph (2017) Combining airborne thermal infrared images and radium isotopes to study submarine groundwater discharge along the French Mediterranean coastline. Journal of Hydrology: Regional Studies, 13. pp. 72-90.

Brodersen, Kasper E., Hammer, Katherine J., Schrameyer, Verena, Floytrup, Anja, Rasheed, Michael, Ralph, Peter J., Kühl, Michael, and Pedersen, Ole (2017) Sediment resuspension and deposition on seagrass leaves impedes internal plant aeration and promotes phytotoxic H2S intrusion. Frontiers in Plant Science, 8. 657. pp. 1-13.

Bartley, Rebecca, Waters, David, Turner, Ryan, Kroon, Frederieke, Garzon-Garcia, Alex, Kuhnert, Petra, Lewis, Stephen, Smith, Rachel, Bainbridge, Zoe, Olley, Jon, Brooks, Andrew, Burton, Jo, Brodie, Jon, and Waterhouse, Jane (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition, Chapter 2: sources of sediment, nutrients, pesticides and other pollutants to the Great Barrier Reef. Report Section. State of Queensland.

Beatty, Stephen J., Allen, Mark G., Whitty, Jeff M., Lymbery, Alan J., Keleher, James J., Tweedley, James R., Ebner, Brendan C., and Morgan, David L. (2017) First evidence of spawning migration by goldfish (Carassius auratus); implications for control of a globally invasive species. Ecology of Freshwater Fish, 26. pp. 444-455.

Boyero, Luz, and Pearson, Richard (2017) Global-scale coordinated networks as a tool for exploring the functioning of stream ecosystems. Limnetica, 36 (2). pp. 557-565.

Brodie, Jon, Devlin, Michelle, and Lewis, Stephen (2017) Potential enhanced survivorship of crown of thorns starfish larvae due to near-annual nutrient enrichment during secondary outbreaks on the central mid-shelf of the Great Barrier Reef, Australia. Diversity, 9 (17).

Beatty, Stephen, Allen, Mark, Lymbery, Alan, Jordaan, Martine S., Morgan, David, Impson, Dean, Marr, Sean, Ebner, Brendan, and Weyl, Olaf L.F. (2017) Rethinking refuges: implications of climate change for dam busting. Biological Conservation, 209. pp. 188-195.

Brodie, Jon E., Lewis, Stephen E., Collier, Catherine J., Wooldridge, Scott, Bainbridge, Zoe, Waterhouse, Jane, Rasheed, Michael, Honchin, Carol, Holmes, Glen, and Fabricius, Katharina (2017) Setting ecologically relevant targets for river pollutant loads to meet marine water quality requirements for the Great Barrier Reef, Australia: a preliminary methodology and analysis. Ocean & Coastal Management, 143. pp. 136-147.

Buckland, Amanda, Baker, Ronald, Loneragan, Neil, and Sheaves, Marcus (2017) Standardising fish stomach content analysis: the importance of prey condition. Fisheries Research, 196. pp. 126-140.

Berry, Kathryn L.E., Hoogenboom, Mia O., Brinkman, Diane L., Burns, Kathryn A., and Negri, Andrew P. (2016) Effects of coal contamination on early life history processes of a reef-building coral, Acropora tenuis. Marine Pollution Bulletin, 114 (1). pp. 505-514.

Boyero, Luz, Pearson, Richard G., Hui, Cang, Gessner, Mark, Pérez, Javier, Alexandrou, Markos A., Graça, Manuel A.S., Cardinale, Bradley J., Albariño, Ricardo J., Arunachalam, Muthukumarasamy, Barmuta, Leon A., Boulton, Andrew J., Bruder, Andreas, Callisto, Marcos, Chauvet, Eric, Death, Russell G., Dudgeon, David, Encalada, Andrea C., Ferreira, Verónica, Figueroa, Ricardo, Flecker, Alexander S., Goncalves, José F., Helson, Julie, Iwata, Tomoya, Jinggut, Tajang, Mathooko, Jude, Mathuriau, Catherine, M'Erimba, Charles, Moretti, Marcelo S., Pringle, Catherine M., Ramírez, Alonso, Ratnarajah, Lavenia, Rincon, José, and Yule, Catherine M. (2016) Biotic and abiotic variables influencing plant litter breakdown in streams: a global study. Proceedings of the Royal Society of London Series B: biological sciences, 283 (1829). 20152664. pp. 1-10.

Burns, Kathyrn A., and Jones, Ross (2016) Assessment of sediment hydrocarbon contamination from the 2009 Montara oil blow out in the Timor Sea. Environmental Pollution, 211. pp. 214-225.

Bryant, Catherine, Davies, Jaclyn, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring: November 2015 - February 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bonthu, Subbareddy, Ganguly, Dipnarayan, Ramachandran, Purvaja, Ramachandran, Ramesh, Pattnaik, Ajit K., and Wolanski, Eric (2016) Both riverine detritus and dissolved nutrients drive lagoon fisheries. Estuarine, Coastal and Shelf Science , 183 (Part B). pp. 360-369.

Bainbridge, Zoe, Lewis, Stephen, Smithers, Scott, Wilkinson, Scott, Douglas, Grant, Hillier, Stephen, and Brodie, Jon (2016) Clay mineral source tracing and characterisation of Burdekin River (NE Australia) and flood plume fine sediment. Journal of Soils and Sediments, 16 (2). pp. 687-706.

Brodie, Jon, and Pearson, Richard G. (2016) Ecosystem health of the Great Barrier Reef: time for effective management action based on evidence. Estuarine, Coastal and Shelf Science, 183. pp. 438-451.

Barnett, Adam, Payne, Nicholas L., Semmens, Jayson M., and Fitzpatrick, Richard (2016) Ecotourism increases the field metabolic rate of whitetip reef sharks. Biological Conservation, 199. pp. 132-136.

Brodie, Jon, and Waterhouse, Jane (2016) Great Barrier Reef (Australia): a multi-ecosystem wetland with a multiple use management regime. In: Finlayson, C.M., Milton, R., Prentice, C., and Davidson, N.C., (eds.) The Wetland Book II: distribution description and conservation. Springer , Dordrecht, Netherlands, pp. 1-14.

Bird, Michael I., O'Grady, Damien, and Ulm, Sean (2016) Humans, water, and the colonization of Australia. Proceedings of the National Academy of Sciences, 113 (41). pp. 11477-11482.

Bryant, Catherine, Davies, Jaclyn, Sankey, Tonia, and Rasheed, Michael (2016) Long-Term Seagrass Monitoring in Port Curtis: quarterly permanent transect monitoring progress report 2009 to 2015. Report. James Cook University, Cairns, QLD, Australia.

Bryant, C.V., Carter, A.B., Jarvis, J.C., and Rasheed, M.A. (2016) Port Curtis seagrass seed bank density and viability studies: year 2 report. Report. James Cook University, Cairns, QLD, Australia.

Barnett, Adam, Abrantes, Kátya G., Baker, Ronald, Diedrich, Amy S., Farr, Marina, Kuilboer, Alf, Mahony, Tracey, McLeod, Ian, Moscardo, Gianna, Prideaux, Murray, Stoeckl, Natalie, van Luyn, Ariella, and Sheaves, Marcus (2016) Sportfisheries, conservation and sustainable livelihoods: a multidisciplinary guide to developing best practice. Fish and Fisheries, 17 (3). pp. 696-713.

Baird, Mark E., Adams, Matthew P., Babcock, Russell C., Oubelkheir, Kadija, Mongin, Mathieu, Wild-Allen, Karen A., Skerratt, Jennifer, Robson, Barbara J., Petrou, Katherina, Ralph, Peter J., O’Brien, Katherine R., Carter, Alex B., Jarvis, Jessie C., and Rasheed, Michael A. (2016) A biophysical representation of seagrass growth for application in a complex shallow-water biogeochemical model. Ecological Modelling, 325. pp. 13-27.

Bartley, Rebecca, Croke, Jacky, Bainbridge, Zoe T., Austin, Jenet M., and Kuhnert, Petra M. (2015) Combining contemporary and long-term erosion rates to target erosion hot-spots in the Great Barrier Reef, Australia. Anthropocene, 10. pp. 1-12.

Brookes, Justin D., Aldridge, Kane T., Bice, Chris M., Deegan, Brian, Ferguson, Greg J., Paton, David C., Sheaves, Marcus, Ye, Qifeng, and Zampatti, Brenton P. (2015) Fish productivity in the lower lakes and Coorong, Australia, during severe drought. Transactions of the Royal Society of South Australia, 139 (2). pp. 189-215.

Baker, Ronald, Sheaves, Marcus, and Johnston, Ross (2015) Geographic variation in mangrove flooding and accessibility for fishes and nektonic crustaceans. Hydrobiologia, 762 (1). pp. 1-14.

Boyero, Luz, Pearson, Richard G., Swan, Christopher M., Hui, Cang, Albariño, Ricardo, Arunachalam, Muthukumarasamy, Callisto, Marcos, Chara, Julian, Chara-Serna, Ana M., Chauvet, Eric, Cornejo, Aydeé, Dudgeon, David, Encalada, Andrea C., Ferreira, Veronica, Gessner, Mark O., Gonçalves, José F., Graça, Manuel A.S., Helsen, Julie E., Mathooko, Jude M., McKie, Brendan G., and Yule, Catherine M. (2015) Latitudinal gradient of nestedness and its potential drivers in stream detritivores. Ecography, 38 (9). pp. 949-955.

Boyero, Luz, Pearson, Richard G., Gessner, Mark O., Dudgeon, David, Ramírez, Alonso, Yule, Catherine M., Callisto, Marcos, Pringle, Catherine M., Encalada, Andrea C., Arunachalam, Muthukumarasamy, Mathooko, Jude, Helson, Julie E., Rincon, José, Bruder, Andreas, Cornejo, Aydeé, Flecker, Alexander S., Mathuriau, Catherine, M'Erimba, Charles, Gonçalves, Jose F., Moretti, Marcelo, and Jinggut, Tajang (2015) Leaf-litter breakdown in tropical streams: is variability the norm? Freshwater Science, 34 (2). pp. 759-769.

Brodie, Jon, Lewis, Stephen, Davis, Aaron, Bainbridge, Zoe, O'Brien, Dominique, Waterhouse, Jane, Devlin, Michelle, and Thomas, Colette R. (2015) Management of agriculture to preserve environmental values of the Great Barrier Reef, Australia. In: Chicharo, Luís, Müller, Felix, and Fohrer, Nicola, (eds.) Ecosystems Services and River Basin Ecohydrology. Springer, Dordrecht, Netherlands, pp. 275-292.

Bayala, J., and Wallace, J.S. (2015) The water balance of mixed tree-crop systems. In: Ong, C.K., Black, Colin R., and Wilson, Julia, (eds.) Tree-crop interactions. CABI International, Wallingford, UK, pp. 146-190.

Bainbridge, Zöe T., Lewis, Stephen E., Smithers, Scott G., Kuhnert, Petra M., Henderson, Brent L., and Brodie, Jon E. (2014) Fine-suspended sediment and water budgets for a large, seasonally dry tropical catchment: Burdekin River catchment, Queensland, Australia. Water Resources Research, 50 (11). pp. 9067-9087.

Bryant, Catherine, and Reason, Carissa (2014) Gladstone Western Basin and Channel Dupliaction BPAR Monitoring May - July 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Binning, Sandra A., Barnes, Jeffrey I., Davies, Jaclyn N., Backwell, Patricia R.Y., Keogh, J. Scott, and Roche, Dominique G. (2014) Ectoparasites modify escape behaviour, but not performance, in a coral reef fish. Animal Behaviour, 93. pp. 1-7.

Brodie, Jon, Waterhouse, Jane, and Maynard, Jeffrey (2014) Prioritising catchment agricultural management practice change through marine risk assessment in the Great Barrier Reef. In: Abstracts from the Society for Conservation Biology Oceania Conference. pp. 101-102. From: Society for Conservation Biology Oceania Conference, 9-11 July 2014, Suva, Fiji.

Bryant, Catherine, Chartrand, Katie, Rasheed, Michael, Leith, Mark, Thomas, Ross, and Ralph, Peter (2014) Seasonal recruitment and senescence in tropical deepwater seagrass meadows. In: 51st Australian Marine Sciences Association annual conference: investigating our marine nation: abstracts. p. 139. From: AMSA 2014 Investigating our Marine Nation: 51st Annual Conference of the Australian Marine Sciences Association, 6-10 July 2014, Canberra, ACT, Australia.

Bryant, Catherine, and Tasker, Zoe (2014) Gladstone Western Basin Post Dredge BPAR Monitoring March - May 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, C., Davies, J.D., Jarvis, J.C., Tol, S., and Rasheed, M. (2014) Seagrasses in Port Curtis & Rodds Bay 2013: annual long term monitoring, biannual western basin surveys & updated baseline survey. Report. TropWATER, James Cook University, Cairns.

Brodie, Jon (2014) Dredging the Great Barrier Reef: use and misuse of science. Estuarine, Coastal and Shelf Science , 142. pp. 1-3.

Bryant, C.V., and Tasker, Z. (2014) Gladstone Western Basin Post Dredge BPAR Monitoring December 2013 - February 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Blanchette, Melanie L., Davis, Aaron M., Jardine, Timothy D., and Pearson, Richard G. (2014) Omnivory and opportunism characterize food webs in a large dry-tropics river system. Freshwater science, 33 (1). pp. 142-158.

Bartley, Rebecca, Bainbridge, Zoe T., Lewis, Stephen E., Kroon, Frederieke J., Wilkinson, Scott N., Brodie, Jon E., and Silburn, D. Mark (2014) Relating sediment impacts on coral reefs to watershed sources, processes and management: a review. Science of the Total Environment, 468-469. pp. 1138-1153.

Bartley, Rebecca, Bainbridge, Zoe T., Lewis, Stephen E., Kroon, Frederieke J., Wilkinson, Scott N., Brodie, Jon E., and Silburn, Mark D. (2014) From coral to cows: using ecosystem processes to inform catchment management of the Great Barrier Reef. In: Proceedings of the 7th Australian Stream Management Conference. pp. 9-16. From: 7th Australian Stream Management Conference: catchment to coast, 27-30 July 2014, Townsville, QLD, Australia.

Bryant, Catherine, Jarvis, Jessie, York, Paul, and Rasheed, Michael (2014) Gladstone Healthy Harbour Partnership Pilot Report Card. ISP011: seagrass final report. Report. TropWATER, Cairns, QLD, Australia.

Bryant, C., Davies, J., Sankey, T., Jarvis, J., and Rasheed, M. (2014) Long Term Seagrass Monitoring in Port Curtis: quarterly seagrass assessments & permanent transect monitoring progress report 2009 to 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Burns, Kathryn A. (2014) PAHs in the Great Barrier Reef Lagoon reach potentially toxic levels from coal port activities. Estuarine, Coastal and Shelf Science , 144. pp. 39-45.

Bryant, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report December 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Butler, James R.A., Wong, Grace Y., Metcalfe, Daniel J., Honzák, Miroslav, Pert, Petina L., Rao, Nalini, van Grieken, Martijn E., Lawson, Tina, Bruce, Caroline, Kroon, Frederieke J., and Brodie, Jon E. (2013) An analysis of trade-offs between multiple ecosystem services and stakeholders linked to land use and water quality management in the Great Barrier Reef, Australia. Agriculture, Ecosystems and Environment, 180. pp. 176-191.

Bryant, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report November 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Berry, Kathryn L.E., Seemann, Janina, Dellwig, Olaf, Struck, Ulrich, Wild, Christian, and Leinfelder, Reinhold R. (2013) Sources and spatial distribution of heavy metals in scleractinian coral tissues and sediments from the Bocas del Toro Archipelago, Panama. Environmental Monitoring and Assessment, 185 (11). pp. 9089-9099.

Bryant, Catherine, Amies, Rachel, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: September 2013 update report. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Brodie, Jon, Waterhouse, Jane, Maynard, Jeffrey, Bennett, John, Furnas, Miles, Devlin, Michelle, Lewis, Stephen, Collier, Catherine, Schaffelke, Britta, Fabricius, Katharina, Petus, Caroline, da Silva, Eduardo, Zeh, Daniel, Randall, Lucy, Brando, Vittorio, McKenzie, Len, O'Brien, Dominique, Smith, Rachael, Warne, Michael, Brinkman, Richard, Tonin, Hemerson, Bainbridge, Zoe, Bartley, Rebecca, Negri, Andrew, Turner, Ryan, Davis, Aaron, Bentley, Christie, Mueller, Jochen, Alvarez-Romero, Jorge, Henry, Nyssa, Waters, David, Yorkston, Hugh, and Tracey, Dieter (2013) Assessment of the relative risk of water quality to ecosystems of the Great Barrier Reef. A report to the Department of the Environment and Heritage Protection, Queensland Government, Brisbane - Report 13/28. Report. James Cook University, Townsville, QLD, Australia.

Barnett, Adam, Yick, Jonah L., Abrantes, Kátya G., and Awruch, Cynthia A. (2013) Trophic ecology of an abundant predator and its relationship with fisheries. Marine Ecology Progress Series, 494. pp. 241-248.

Broadhurst, Ben T., Lintermans, Mark, Thiem, Jason D., Ebner, Brendan C., Wright, Daniel W., and Clear, Rhian C. (2012) Spatial ecology and habitat use of two-spined blackfish Gadopsis bispinosus in an upland reservoir. Aquatic Ecology, 46 (3). pp. 297-309.

Bainbridge, Zoe T., Wolanski, Eric, Alvarez Romero, Jorge, Lewis, Stephen E., and Brodie, Jon E. (2012) Fine sediment and nutrient dynamics related to particle size and floc formation in a Burdekin River flood plume, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 236-248.

Brodie, J.E., Kroon, F.J., Schaffelke, B., Wolanski, E.C., Lewis, S.E., Devlin, M.J., Bohnet, I.C., Bainbridge, Z.T., Waterhouse, J., and Davis, A.M. (2012) Terrestrial pollutant runoff to the Great Barrier Reef: an update of issues, priorities and management responses. Marine Pollution Bulletin, 65 (4-9). pp. 81-100.

Brodie, Jon, Wolanski, Eric, Lewis, Stephen, and Bainbridge, Zoe (2012) An assessment of residence times of land-sourced contaminants in the Great Barrier Reef lagoon and the implications for management and reef recovery. Marine Pollution Bulletin, 65 (4-9). pp. 267-279.

Brodie, Jon, and Waterhouse, Jane (2012) A critical review of environmental management of the 'not so Great' Barrier Reef. Estuarine, Coastal and Shelf Science , 104-105. pp. 1-22.

Broadhurst, B.T. , Ebner, B.C., and Clear, R.C. (2012) A rock-ramp fishway expands nursery grounds of the endangered Macquarie perch (Macquaria australasica). Australian Journal of Zoology, 60 (2). pp. 91-100.

Brodie, J.E., Devlin, M., Haynes, D., and Waterhouse, J. (2011) Assessment of the eutrophication status of the Great Barrier Reef lagoon (Australia). Biogeochemistry, 106 (2). pp. 281-302.

Bricker, Suzanne, and Devlin, Michelle (2011) Preface: "Eutrophication" issue of Biogeochemistry. Biogeochemistry, 106 (2). pp. 135-136.

Bohensky, Erin, Butler, James R.A., Costanza, Robert, Bohnet, Iris, Delisle, Aurélie, Fabricius, Katharina, Gooch, Margaret, Kubiszewski, Ida, Lukacs, George, Pert, Petina, and Wolanski, Eric (2011) Future makers or future takers? A scenario analysis of climate change and the Great Barrier Reef. Global Environmental Change, 21 (3). pp. 876-893.

Bainbridge, Zoe, Dight, Ian, Yorkston, Hugh, Lewis, Stephen, and Brodie, Jon (2011) Catchment management in a dry tropical river near the Great Barrier Reef. In: Wilkinson, Clive, and Brodie, Jon, (eds.) Catchment Management and Coral Reef Convservation. Global Coral Reef Monitoring Network and Reef and Rainforest Research Centre, Townsville, QLD, Australia, pp. 96-97.

Ben-Hamadou, R., Atanasova, N., and Wolanski, E. (2011) Ecohydrology modeling: tools for management. In: Wolanski, Eric, McLusky, Donald, Chícharo, L., and Zalewski, M., (eds.) Ecohydrology and Restoration. Treatise on Estuarine and Coastal Science, 10 . Academic Press, London, UK, pp. 301-328.

Bohnet, Iris C., Roebeling, Peter C., Williams, Kristen J., Holzworth, Dean, van Grieken, Martijn E., Pert, Petina L., Kroon, Frederieke J., Westcott, David A., and Brodie, Jon (2011) Landscapes Toolkit: an integrated modelling framework to assist stakeholders in exploring options for sustainable landscape development. Landscape Ecology, 26 (8). pp. 1179-1198.

Baker, William J., Norup, Maria V., Clarkson, James J., Couvreur, Thomas L.P., Dowe, John L., Lewis, Carl E., Pintaud, Jean-Christophe, Savolainen, Vincent, Wilmot, Tomas, and Chase, Mark W. (2011) Phylogenetic relationships among arecoid palms (Arecaceae: Arecoideae). Annals of Botany, 108 (8). pp. 1417-1432.

Barfod, Anders S., Dowe, John Leslie, and Suksathan, Piyakaset (2010) Major Jenkins' fan palm in Thailand. Palms, 54 (3). pp. 109-118.

Brodie, Jon, Schroeder, Thomas, Rohde, Ken, Faithful, John, Masters, Bronwyn, Dekker, Arnold, Brando, Vittorio, and Maughan, Mirjam (2010) Dispersal of suspended sediments and nutrients in the Great Barrier Reef lagoon during river-discharge events: conclusions from satellite remote sensing and concurrent flood-plume sampling. Marine and Freshwater Research, 61 (6). pp. 651-664.

Bainbridge, Zoe T., Brodie, Jon E. , Faithful, John W., Sydes, Damon A., and Lewis, Stephen E. (2009) Identifying the land-based sources of suspended sediments, nutrients and pesticides discharged to the Great Barrier Reef from the Tully–Murray Basin, Queensland, Australia. Marine and Freshwater Research, 60 (11). pp. 1081-1090.

Bainbridge, Z.T., Brodie, J.E., Lewis, S.E., Waterhouse, J., and Wilkinson, S.N. (2009) Utilising catchment modelling as a tool for monitoring Reef Rescue outcomes in the Great Barrier Reef catchment area. In: Proceedings of 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation. pp. 3301-3307. From: 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 13–17 July 2009, Cairns, QLD, Australia.

Brodie, Jon, Pearson, Richard, Lewis, Stephen, Bainbridge, Zoe, Waterhouse, Jane, and Prange, Joelle (2009) Water quality research: baseline synthesis and year 1 summary. Report. Reef and Rainforest Research Centre on behalf of the Australian Government's Marine and Tropical Sciences Research Facility, Cairns, Australia.

Brodie, Jon, Lewis, Stephen, Bainbridge, Zoe, Mitchell, Alan, Waterhouse, Jane, and Kroon, Frederieke (2009) Target setting for pollutant discharge management of rivers in the Great Barrier Reef catchment area. Marine and Freshwater Research, 60 (11). pp. 1141-1149.

Barbier, Edward B., Koch, Evamaria W., Silliman, Brian R., Hacker, Sally D., Wolanski, Eric, Primavera, Jurgenne H., Granek, Elise F., Polasky, Stephen, Aswani, Shankar, Cramer, Lori A., Stoms, David M., Kennedy, Chris J., Bael, David, Kappel, Carrie V., Perillo, Gerardo M. E., and Reed, Denise J. (2008) Response to N. Koedam and F. Dahdouh-Guebas's E-Letter [original article: Barbier et al. (2008) Coastal ecosystem-based management with nonlinear ecological functions and values]. Science, 320. pp. 321-323.

Barbier, Edward B., Koch, Eva-Maria W., Silliman, Brian R., Hacker, Sally D., Wolanski, Eric, Primavera, Jurgenne H., Granek, Elise F., Polasky, Stephen, Aswani, Shankar, Cramer, Lori A., Stoms, David M., Kennedy, Chris J., Bael, David, Kappel, Carrie V., Perillo, Gerardo M.E., and Reed, Denise J. (2008) Vegetation's role in coastal protection: response. American Association for the Advancement of Science.

Barbier, Edward B, Koch, Evamaria W., Silliman, Brian R., Hacker, Sally D., Wolanski, Eric, Primavera, Jurgenne, Granek, Elise F., Polasky, Stephen, Aswani, Shankar, Cramer , Lori A., Stoms, David M., Kennedy, Chris J., Bael, David, Kappel, Carrie V., Perillo, Gerardo M.E., and Reed, Denise J. (2008) Coastal ecosystem–based management with nonlinear ecological functions and values. Science, 319. pp. 321-323.

Bohnet, Iris, Brodie, Jon, and Bartley, Rebecca (2008) Assessing water quality impacts of community defined land use change scenarios for the Douglas Shire, Far North Queensland. In: Pettit, Christopher, Cartwright, William, Bishop, Ian, Lowell, Kim, Pullar, David, and Duncan, David, (eds.) Landscape Analysis and Visualisation: spatial models for natural resource management and planning. Springer, Berlin, Heidleberg, pp. 383-406.

Bainbridge, Zoe, Brodie, Jon, Manning, Chris, Waterhouse, Jane, Lewis, Stephen, Gooch, Margaret, and Broderick, Kathleen (2008) Integrated Monitoring and Modelling Strategy for the Black Ross Water Quality Improvement Plan. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Brodie, J., and Fabricius, K. (2008) Terrestrial runoff to the Great Barrier Reef and the implications for its long term ecological status. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 108-113.

Brodie, Jon, Bainbridge, Zoe, and Lewis, Stephen (2008) Tully Murray Water Quality Monitory Strategy. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Brodie, Jon, and Bainbridge, Zoe (2008) Water Quality Targets for the Burdekin Water Quality Improvement Plan. ACTFR Report No. 08/05 for the Burdekin Dry Tropics NRM. Report. James Cook University, Townsville, QLD, Australia.

Brodie, J., De'ath, G., Devlin, M., Furnas, M., and Wright, M. (2007) Spatial and temporal patterns of near-surface chlorophyll a in the Great Barrier Reef lagoon. Marine and Freshwater Research, 58 (4). pp. 342-353.

Butler, Barry, Loong, Dom, and Burrows, Damien (2007) Accumulation of metals in stream sediments of the Upper Walsh River Catchment, North Queensland. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Burrows, Damien, and Butler, Barry (2007) Determining end-point goals and effective strategies for rehabilitation of Coastal Wetlands: examples from the Burdekin River, North Queensland. In: Proceedings of the 5th Australian Stream Management Conference: Australian Rivers: Making a Difference. pp. 49-54. From: 5th Australian Stream Management Conference: Australian Rivers: Making a Difference, 21-25 May 2007, Albury, NSW.

Butler, Barry, and Burrows, Damien W. (2007) Dissolved Oxygen Guidelines for Freshwater Habitats of Northern Australia. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Butler, Barry, Burrows, Damien, and Pearson, Richard (2007) Providing regional NRM with improved aquatic health risk assessment and monitoring tools: the nationally significant indication: dissolved oxygen. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Bainbridge, Z.T., Lewis, S.E., and Brodie, J.E. (2007) Sediment and nutrient exports for the Burdekin River catchment, north Queensland: a comparison of monitoring and modelling data. In: Proceedings of MODSIM07: the International Congress on Modelling and Simulation. pp. 874-880. From: MODSIM07: International Congress on Modelling and Simulation, 10-13 December 2007, Christchurch, New Zealand.

Brodie, Jon, Fabricius, Katharina, De'ath, Glenn, and Okaji, Ken (2005) Are increased nutrient inputs responsible for more outbreaks of crown-of-thorns starfish? an appraisal of the evidence. Marine Pollution Bulletin, 51 (1-4). pp. 266-278.

Brodie, Jon E., and Mitchell, Alan W. (2005) Nutrients in Australian tropical rivers: changes with agricultural development and implications for receiving environments. Marine and Freshwater Research, 56 (3). pp. 279-302.

Barfod, Anders S., and Dowe, John Leslie (2005) The enigmatic Australian fan-palm Licuala ramsayi. Palms, 49 (1). pp. 15-23.

Brodie, Jon E., and Devlin, Michelle (2004) Exposure of Great Barrier Reef reefs to land-sourced contaminants: changes due to catchment agricultural development. In: Proceedings of the 10th International Coral Reef Symposium. p. 79. From: 10th International Coral Reef Symposium, 28 June - 2 July 2004, Okinawa, Japan.

Burrows, Damien (2004) Aquatic ecosystems. In: McCullough, Marnie, and Musso, Barbara, (eds.) Healthy Rangelands: principles for sustainable systems. Focus on Australia's Burdekin rangelands. Tropical Savannas CRC, pp. 148-170.

Brinkman, R., Wolanski, E., and Spagnol, S. (2004) Field and model studies of the nepheloid layer in coastal waters of the Great Barrier Reef, Australia. In: Jirka, Gerhard H., and Uijttewaal, Wim S.J., (eds.) Shallow Flows. Taylor & Francis, London, UK, pp. 225-229.

Brodie, Jon , and Furnas, Miles (2003) Status of nutrient and sediment inputs from great Barrier Reef catchments and impacts on the Reef. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.

Brodie, Jon E., McKergow, Lucy A., Prosser, Ian P., Furnas, Miles, Hughes, Andrew O., and Hunter, Heather (2003) Sources of sediment and nutrient exports to the Great Barrier Reef World Heritage Area. Report. Australian Centre for Tropical Freshwater Research, Townsville, Australia.

Brodie, J., Mitchell, A., Furnas, M., Haynes, D., Waterhouse, J., Ghonim, S., Morris, S., Yorkston, H., and Audas, D. (2003) Developing catchment pollutant load targets for the protection of the Great Barrier Reef. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20-23 November 2001, Townsville, QLD, Australia.

Brodie, Jon (2003) The Great Barrier Reef: 25 Years of management as a large marine ecosystem. In: Hempel, Gotthilf, and Sherman, Kenneth, (eds.) Large Marine Ecosystems of the World: trends in exploitation, protection, and research. Elsevier, The Netherlands, pp. 313-336.

Burns, K.A., Codi, S., and Duke, N.C. (2000) Gladstone, Australia field studies: weathering and degradation of hydrocarbons in oiled mangrove and salt marsh sediments with and without the application of an experimental bioremediation protocol. Marine Pollution Bulletin, 41 (7-12). pp. 392-402.

Burrows, Damien (2000) Literature review of the potential impacts of grazing on aquatic and riparian ecosystems in the Australian dry tropical rangelands. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien, Faithful, John, Kutt, Alex, Tait, Jim, and Blunden, Lynda (1999) Environmental study of a proposed dam at Mount Douglas on the Belyando River. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1999) Review of buffer widths for Oonoonba School Lagoon. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W., and Kutt, Alex (1999) Review of environmental factors - Flinders Highway (Gardner Creek to Burra Range). Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1999) Review of environmental factors - Tully - Hull Road. Report. James Cook University, Townsville, QLD, Australia.

Butler, B., and Lukacs, G. (1999) Water quality planning Elliott main channel. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W., Pusey, Bradley, Werren, Garry, Walsh, Kerry, Kutt, Alex, Cumming, Russell, and Cohen, Martin (1999) An initial environmental assessment of water infrastructure options in the Burdekin Catchment. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W., Kutt, Alex S., and Kemp, Jeanette E. (1998) Burdekin catchment study – a desktop study of environmental issues associated with dam and irrigation area development. Report. James Cook University, Townsville, QLD, Australia.

Butler, Barry, and Tait, Jim (1998) DNR training course on bioaccumulation - workbook. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1998) FNQ 2010 regional environment strategy. Key waterways report. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W., and Butler, Barry (1998) Literature review and scoping study of the potential downstream impacts of the proposed Nathan Dam on the Dawson River, Fitzroy River and offshore environments. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1998) PNG gas project. Wetland and watercourse crossing study. Cable Beach to Gladstone. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1998) Reed beds pump station and pipeline environmental review. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W., Tait, Jim P., and Webb, Alan C. (1998) A brief biological survey of Idalia Lagoon, Townsville. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1997) Papua New Guinea to Queensland Gas Pipeline wetland and watercourse crossing study Cape York to Gladstone. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1997) Papua New Guinea to Queensland gas pipeline: butterfly desktop review. Report. James Cook University, Townsville, QLD, Australia.

Butler, B.M., and Taylor, J.P. (1996) Comalco Weipa water quality investigation stage 1. Report. James Cook University, Townsville, QLD, Australia.

Butler, Barry, Birtles, Alastair, Pearson, Richard, and Jones, Kim (1996) Ecotourism, water quality and wet tropics streams. Report. James Cook University, Townsville, QLD, Australia.

Burrows, D.W., Kutt, A.S., and Cumming, R.J. (1996) Pandora gas pipeline Palmer River to Townsville section. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien Wayne (2003) The role of insect leaf herbivory on the mangroves Avicennia marina and Rhizophora stylosa. PhD thesis, James Cook University.

C

Collins, William, Bellwood, David, Morais Araujo, Renato, Waltham, Nathan, and Siqueira Correa, Alexandre (2024) Diel movement patterns in nominally nocturnal coral reef fishes (Haemulidae and Lutjanidae): Intra vs. Interspecific variation. Coral Reefs. (In Press)

Cvitanovic, Christopher, Acedera, Mari-Ann M., Samonte, Preciosa C., Baria-Rodriguez, Maria Vanessa, Cabaitan, Patrick, Phuong Dzung, Nguyen Thi, Binh, Nguyen Thanh, Luyen, Nguyen Hanh, Khac Bat, Nguyen Khac, Tran, Nam Anh, Wibowo, Arif, Roeroe, Mi Pingkan Katharina, Muawanah, Umi, Camp, Emma F., Chartrand, Kathyrn M., Diedrich, Amy, Donnelly, Ryan, Bee, Cameron, Fabinyi, Michael, Scott, Abigail L., and Van Putten, Ingrid (2024) Roadmap for improving coral reef restoration practices in Southeast Asia. Ecological Management and Restoration. (In Press)

Cleguer, C., Hamel, M.A., Rankin, R.W., Langlois, L., Edwards, C., and Marsh, H. (2024) 2023 Dugong Aerial Survey: Mission Beach to Cape York. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Cartwright, Paula, Browne, Nicola, Fearns, Peter, O'leary, Mick, and Lowe, Ryan (2024) Applying ensemble climate models to predict the fate of marginal coral reefs already existing at thermal and turbidity limits in arid tropical Australia. Climate Resilience and Sustainability, 3 (1). e66.

Ceccarelli, Daniela M., Logan, Murray, Evans, Richard D., Jones, Geoffrey P., Puotinen, Marji, Petus, Caroline, Russ, Garry R., Sinclair-Taylor, Tane, Srinivasan, Maya, and Williamson, David H. (2024) Regional-scale disturbances drive long-term decline of inshore coral reef fish assemblages in the Great Barrier Reef Marine Park. Global Change Biology, 30 (10). 17506.

Carter, A., McKenna, S., Rasheed, M.A., Taylor, H., van de Wetering, C., Chartrand, K., Reason, C., Collier, C., Shepherd, L., Mellors, J., McKenzie, L., Duke, N.C., Roelofs, A., Smit, N., Groom, R., Barrett, D., Evans, S., Pitcher, R., Murphy, N., Carlisle, M., David, M., Lui, S., Torres Strait Indigenous Rangers, and Coles, R.G. (2024) Seagrass spatial data synthesis from north-east Australia, Torres Strait and Gulf of Carpentaria, 1983 to 2022. Limnology and Oceanography Letters, 9 (1). pp. 7-22.

Cartwright, P.J., Iles, J.A., and Waltham, N.J. (2024) Southern Mackay Ambient Marine Water Quality Monitoring Program: Annual Report 2022-2023. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Cleguer, Christophe, Garrigue, Claire, Fuentes, Mariana M.P.B., Hamann, Mark, Payri, Claude, and Marsh, Helene (2024) Temporal changes in habitat use by dugongs in a spatially restricted coral reef environment. Pacific Conservation Biology, 30 (2). PC23036.

Cartwright, P.J., Iles, J.A., Johns, J., and Waltham, N.J. (2024) Whitsunday water quality monitoring blueprint for tourism operators: Annual report 2023–2024. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Cleguer, Christophe, Hamel, Melanie, Rankin, Robert, Genson, Allyson, Edwards, Chloe, Collins, Kym, Crowe, Michael, Choukroun, Severine, and Marsh, Helene (2023) 2022 Dugong Aerial Survey: Mission Beach to Moreton Bay. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Canning, Adam D., Smart, James C.R., Dyke, Joshua, Curwen, Graeme, Hasan, Syezlin, and Waltham, Nathan J. (2023) Constructed Wetlands Suitability for Sugarcane Profitability, Freshwater Biodiversity and Ecosystem Services. Environmental Management, 71. pp. 304-320.

Canning, A.D., and Death, R.G. (2023) Establishing riverine nutrient criteria using individual taxa thresholds. Water Research, 246. 120731.

Chung, Christine T.Y., Hope, Pandora, Hutley, Lindsay B., Brown, Josephine, and Duke, Norman C. (2023) Future climate change will increase risk to mangrove health in Northern Australia. Communications Earth & Environment, 4. 192.

Cook, Nathan, Cook, Kailash, Harris, Kaitlyn J., Songcuan, Al, and Smith, Adam (2023) Lessons learned implementing mineral accretion and coral gardening at Agincourt Reef, Great Barrier Reef. Ecological Management & Restoration, 24 (2-3). pp. 107-118.

Ceccarelli, Daniela M., Evans, Richard D., Logan, Murray, Jones, Geoffrey P., Puotinen, Marji, Petus, Caroline, Russ, Garry R., Srinivasan, Maya, and Williamson, David H. (2023) Physical, biological and anthropogenic drivers of spatial patterns of coral reef fish assemblages at regional and local scales. Science of the Total Environment, 904. 166695.

Cartwright, Paula, Waltham, Nathan, and Iles, Jordan (2023) Southern Mackay Ambient Marine Water Quality Monitoring Program: Annual Report 2021-2022. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Cameron, Kerry, Chartrand, Katie, Cameron, Grant, Miller, Ross, Shepherd, Lloyd, Concannon, Tess, and Singleton, Tarquin (2023) Stay or spray? Evaluating larval delivery strategies in a multi-partner coral reef restoration project across Gunggandji and Yirrganydji Sea Country. In: [Presented at the Australian Marine Sciences Association Conference 2023]. From: Australian Marine Sciences Association Conference 2023: Science in Sea Country, 2-7 July 2023, Gold Coast, QLD, Australia.

Cadier, Charles, Waltham, Nathan J., Canning, Adam, Fry, Scott, and Adame, Maria (2023) Tidal restoration to reduce greenhouse gas emissions from freshwater impounded coastal wetlands. Restoration Ecology, 31 (8). e13829.

Carter, A., Allan, S., Scott, A., Rasheed, M.A., and Torres Strait Regional Authority Land and Sea Rangers (2023) Torres Strait Seagrass Report Card 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Cartwright, Paula, Waltham, Nathan, and Iles, Jordan (2023) Whitsunday Water Quality Monitoring Blueprint for Tourism Operators: Annual report 2021-2022. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Cleguer, C., and Marsh, H. (2023) An inventory of dugong aerial surveys in Australia. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Carter, Alex B., Coles, Rob, Jarvis, Jessie C., Bryant, Catherine V., Smith, Timothy M., and Rasheed, Michael A. (2023) A report card approach to describe temporal and spatial trends in parameters for coastal seagrass habitats. Scientific Reports, 13. 2295.

Campbell, Cherie J., James, Cassandra S., Morris, Kaylene, Nicol, Jason M., Thomas, Rachael F., Nielsen, Daryl L., Gehrig, Susan L., Palmer, Gary J., Wassens, Skye, Dyer, Fiona, Southwell, Mark, Watt, Robin J., Bond, Nick R., and Capon, Samantha J. (2022) Blue, green and in-between: objectives and approaches for evaluating wetland flow regimes based on vegetation outcomes. Marine and Freshwater Research, 73. pp. 1212-1224.

Castle, Alicia, and Waltham, Nathan (2022) Clearance rates achieved by an intertidal oyster, Isognomon ephippium, under different tidal emersion and temperature conditions. Estuarine, Coastal and Shelf Science, 276. 108018.

Carter, Alex B., Collier, Catherine, Coles, Robert, Lawrence, Emma, and Rasheed, Michael A. (2022) Community-specific "desired" states for seagrasses through cycles of loss and recovery. Journal of Environmental Management, 314. 115059.

Chartrand, Katie, Mumby, Peter, Ridley, Andy, Roelfsema, Chris, and Uusitalo, Jasmina (2022) Great Reef Census – A scalable shared economy approach to reconnaissance survey reef ecosystems. In: [Presented at the Australian Marine Sciences Association 2022 Conference]. From: Australian Marine Science Association Conference 2022: Change and connections, 7-12 August 2022, Cairns, QLD, Australia.

Cook, P.A., Warnock, B., Gillies, C.L., and Hams, A.B. (2022) Historical abundance and distribution of the native flat oyster (Ostrea angasi) in estuaries of the Great Southern region of Western Australia help to prioritise potential sites for contemporary oyster reef restoration. Marine and Freshwater Research, 73 (1). pp. 48-56.

Claassens, L., de Villiers, N.M., and Waltham, N.J. (2022) How developed is the South African coast? Baseline extent of South Africa’s coastal and estuarine infrastructure. Ocean and Coastal Management, 222. 106112.

Cook, Nathan, Smith, Adam, Songcuan, Al, Cassidy, Daniel, Sartori, Greta, and McLeod, Ian (2022) Lessons learned from small-scale coral outplanting intervention at a restoration site on the Great Barrier Reef. Ecological Management and Restoration, 23 (1). pp. 89-93.

Canning, Adam, and Duke, Norm (2022) Monitoring mangrove threats across the Torres Straits using remote-sensing. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Clough, B., Amir, A.A., Chong, V.C., Duke, N.C., Field, C.D., Kjerfve, B., Lee, S.Y., Sasekumar, A., Wong, S.C., Yong, J.W.H., and Gong, W.K. (2022) OBITUARY Dr. Ong Jin Eong (August 28, 1943–August 5, 2021). Estuarine, Coastal and Shelf Science, 266. 107746.

Chartrand, K.M, and Scott, A. (2022) Pilot survey of deep-water seagrasses using the Great Reef Census framework. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Cartwright, Paula, Iles, Jordan, and Waltham, Nathan (2022) Port of Abbot Point Ambient Marine Water Quality Monitoring Program: Annual Report 2021-2022. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Cartwright, P., Iles, J.A., and Waltham, N.J. (2022) Port of Mackay and Hay Point Ambient Marine Water Quality Monitoring Program: Annual Report 2021-2022. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Cooper, Madalyn K., Villacorta-Rath, Cecilia, Burrows, Damien, Jerry, Dean R., Carr, Leah, Barnett, Adam, Huveneers, Charlie, and Simpfendorfer, Colin A. (2022) Practical eDNA sampling methods inferred from particle size distribution and comparison of capture techniques for a Critically Endangered elasmobranch. Environmental DNA, 4 (5). pp. 1011-1023.

Chartrand, K.M., Carter, A.B., Hoffmann, L., and Smith, T. (2022) Progress Report: MARRS Monitoring Trial at Moore Reef – June 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Canning, Adam D. (2022) Rediscovering wild food to diversify production across Australia's agricultural landscapes. Frontiers in Sustainable Food Systems, 6. 865580.

Cleguer, Christophe (2022) Review of dugong detections from images collected during a dugong survey in New Caledonia. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Carter, A., Hoffmann, L.R., Scott, A., David, M., Torres Strait Regional Authority Land and Sea Rangers, and Rasheed, M.A. (2022) Torres Strait Seagrass Report Card 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Cartwright, Paula, Iles, Jordan, Mattone, Carlo, O'Callaghan, Mark, and Waltham, Nathan (2022) Turbidity (NTU) to Suspended Sediment Concentration (SSC) Conversion Protocol. Report. TropWATER, Townsville, QLD, Australia.

Comeros-Raynal, Mia T., Brodie, Jon, Bainbridge, Zoe, Choat, John Howard, Curtis, Meagan, Lewis, Stephen, Stevens, Thomas, Shuler, Christopher K., Sudek, Mareike, and Hoey, Andrew S. (2021) Catchment to sea connection: impacts of terrestrial run-off on benthic ecosystems in American Samoa. Marine Pollution Bulletin, 169. 112530.

Colombano, Denise D., Litvin, Steven Y., Ziegler, Shelby L., Alford, Scott B., Baker, Ronald, Barbeau, Myriam A., Cebrián, Just, Connolly, Rod M., Currin, Carolyn A., Deegan, Linda A., Lesser, Justin S., Martin, Charles W., McDonald, Ashley E., McLuckie, Catherine, Morrison, Blair H., Pahl, James W., Risse, L. Mark, Smith, Joseph A.M., Staver, Lorie W., Turner, R. Eugene, and Waltham, Nathan J. (2021) Climate change implications for tidal marshes and food web linkages to estuarine and coastal nekton. Estuaries and Coasts, 44. pp. 1637-1648.

Creighton, Colin, Waterhouse, Jane, Day, Jon C., and Brodie, Jon (2021) Criteria for effective regional scale catchment to reef management: a case study of Australia's Great Barrier Reef. Marine Pollution Bulletin, 173 (Part A). 112882.

Canning, Adam D., and Waltham, Nathan J. (2021) Ecological impact assessment of climate change and habitat loss on wetland vertebrate assemblages of the Great Barrier Reef catchment and the influence of survey bias. Ecology and Evolution, 11 (10). pp. 5244-5254.

Chilton, Daniel, Hamilton, David P., Nagelkerken, Ivan, Cook, Perran, Hipsey, Matthew R., Reid, Robert, Sheaves, Marcus, Waltham, Nathan J., and Brookes, Justin (2021) Environmental flow requirements of estuaries: providing resilience to current and future climate and direct anthropogenic changes. Frontiers in Environmental Science, 9. 764218.

Canning, Adam D., Jarvis, Diane, Costanza, Robert, Hasan, Syezlin, Smart, James C.R., Finisdore, John, Lovelock, Catherine E., Greenhalgh, Suzie, Marr, Helen M., Beck, Michael W., Gillies, Christopher L., and Waltham, Nathan J. (2021) Financial incentives for large-scale wetland restoration: beyond markets to common asset trusts. One Earth, 4 (7). pp. 937-950.

Cooper, Madalyn K., Huerlimann, Roger, Edmunds, Richard C., Budd, Alyssa M., Le Port, Agnes, Kyne, Peter M., Jerry, Dean R., and Simpfendorfer, Colin A. (2021) Improved detection sensitivity using an optimal eDNA preservation and extraction workflow and its application to threatened sawfishes. Aquatic Conservation: marine and freshwater ecosystems, 31 (8). pp. 2131-2148.

Canning, Adam D., Joy, Michael K., and Death, Russell G. (2021) Nutrient criteria to achieve New Zealand’s riverine macroinvertebrate targets. PeerJ, 9. e11556.

Canning, Adam D., Death, Russell G., and Waltham, Nathan J. (2021) Pharmaceutical companies should pay for raiding nature's medicine cabinet. Lancet, 398 (10303). pp. 840-841.

Chartrand, K.N., Hoffmann, L.R., Ayling, A., and Ayling, T. (2021) Port of Abbot Point Ambient Coral Monitoring Surveys: 2020-2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Chartrand, K.M., Hoffmann, L.R., Ayling, A., and Ayling, T. (2021) Ports of Mackay and Hay Point Ambient Coral Monitoring Surveys: 2020-2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Chartrand, K.M., and Carter, A.B. (2021) Reef Restoration Foundation Fitzroy Island Coral Habitat Assessment: June 2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, A.B., Kish, H., and Chartrand, K. (2021) Reef Restoration Foundation Fitzroy Island Coral Nursery Monitoring: methods and results April - October 2020. Report. James Cook University, Cairns, QLD, Australia.

Carter, Alex, Coles, Rob, Rasheed, Michael, and Collier, Catherine J. (2021) Seagrass communities of the Great Barrier Reef and their desired state: applications for spatial planning and management. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Carter, A.B., McKenna, S.A., and Shepherd, L. (2021) Subtidal seagrass of western Torres Strait. Report. James Cook University, Cairns, QLD, Australia.

Carter, Alex B., McKenna, Skye A., Rasheed, Michael A., Collier, Catherine, McKenzie, Len, Pitcher, Roland, and Coles, Rob (2021) Synthesizing 35 years of seagrass spatial data from the Great Barrier Reef World Heritage Area, Queensland, Australia. Limnology and Oceanography Letters, 6 (4). pp. 216-226.

Carter, Alexandra, Wilkinson, Juliette, David, Madeina, and Lukac, Micaela (2021) Torres Strait Eastern Cluster: intertidal seagrass baseline survey. Report. James Cook University, Cairns, QLD, Australia.

Carter, Alexandra, David, Madeina, Whap, Terrence, Hoffman, Luke, Scott, Abigail, and Rasheed, Michael (2021) Torres Strait Seagrass 2021 Report Card. Report. James Cook University, Cairns, QLD, Australia.

Collier, C.J., Langlois, L.M., McMahon, K.M., Udy, J., Rasheed, M., Lawrence, E., Carter, A.B., Fraser, M.W., and McKenzie, L.J. (2021) What lies beneath: predicting seagrass below-ground biomass from above-ground biomass, environmental conditions and seagrass community composition. Ecological Indicators, 121. 107156.

Canto, Marites M., Fabricius, Katharina E., Logan, Murray, Lewis, Stephen, McKinna, Lachlan I.W., and Robson, Barbara J. (2021) A benthic light index of water quality in the Great Barrier Reef, Australia. Marine Pollution Bulletin, 169. 112539.

Canning, Adam D., and Death, Russell G. (2021) The influence of nutrient enrichment on riverine food web function and stability. Ecology and Evolution, 11 (4). pp. 942-954.

Carter, Alex B., Collier, Catherine, Lawrence, Emma, Rasheed, Michael A., Robson, Barbara J., and Coles, Rob (2021) A spatial analysis of seagrass habitat and community diversity in the Great Barrier Reef World Heritage Area. Scientific Reports, 11. 22344.

Connolly, Niall M., and Pearson, Richard G. (2020) Do constrained immigration rates and high beta diversity explain contrasting productivity-diversity patterns measured at different scales? Oecologia, 194 (3). pp. 481-490.

Chartrand, K.M., Fletcher-Leonhardt, J.D., and Rasheed, M.A. (2020) Green Island Jetty Repairs Coral Monitoring Report – December 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Chartrand, K.M., and Wilkinson, J. (2020) Port of Townsville Chanel Upgrade Project: Western Breakwater Seagrass Assessment April 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Chartrand, K.M., Wilkinson, J.S., and Rasheed, M.A. (2020) Port of Townsville Seagrass Monitoring Program, interim report: Sept/Oct 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, A.B., Kish, H., and Chartrand, K. (2020) Reef Restoration Foundation Hastings Reef Coral Nursery Monitoring: December 2019 - July 2020. Report. James Cook University, Cairns, QLD, Australia.

Crawford, C., Edgar, G., Gillies, C. L., and Heller-Wagner, G. (2020) Relationship of biological communities to habitat structure on the largest remnant flat oyster reef (Ostrea angasi) in Australia. Marine and Freshwater Research, 71 (8). pp. 972-983.

Ceccarelli, Daniela M., McLeod, Ian M., Boström-Einarsson, Lisa, Bryan, Scott E., Chartrand, Kathryn M., Emslie, Michael J., Gibbs, Mark T., Gonzalez Rivero, Manuel, Hein, Margaux Y., Heyward, Andrew, Kenyon, Tania M., Lewis, Brett M., Newlands, Maxine, Mattocks, Neil, Schläppy, Marie-Lise, Suggett, David J., and Bay, Line K. (2020) Substrate stabilisation and small structures in coral restoration: state of knowledge, and considerations for management and implementation. PLoS ONE, 15 (10). e0240846.

Carter, Alexandra, Mellors, Jane, Whap, Terrence, and Hoffman, Luke (2020) Torres Strait Seagrass 2020 Report Card. Report. James Cook University, Cairns, QLD, Australia.

Collier, C.J., Carter, A.B., Rasheed, M., McKenzie, L., Udy, J., Coles, R., Brodie, J., Waycott, M., O’Brien, K.R., Saunders, M., Adams, M., Martin, K., Honchin, C., Petus, C., and Lawrence, E. (2020) An evidence-based approach for setting desired state in a complex Great Barrier Reef seagrass ecosystem: a case study from Cleveland Bay. Environmental and Sustainability Indicators, 7. 100042.

Canning, Adam D., and Death, Russell G. (2019) Ecosystem health indicators - freshwater environments. In: Fath, Brian D., (ed.) Encyclopedia of Ecology. Elsevier, pp. 46-60.

Canning, Adam Douglas, and Death, Russell George (2019) Food web structure but not robustness differ between rivers, lakes and estuaries. Oecologia Australis, 23 (1). pp. 112-126.

Canning, Adam D., Death, Russell G., and Gardner, Erna M. (2019) Forest canopy affects stream macroinvertebrate assemblage structure but not trophic stability. Freshwater Science, 38 (1). pp. 40-52.

Carter, Alex, Chartrand, Katie, Wells, Jaclyn, and Rasheed, Michael (2019) Gladstone Healthy Harbour Partnership 2019 Report Card, ISP011: seagrass. Report. James Cook University, Cairns, QLD, Australia.

Ceccarelli, Daniela M., Evans, Richard D., Logan, Murray, Mantel, Philippa, Puotinen, Marji, Petus, Caroline, Russ, Garry R., and Williamson, David H. (2019) Long-term dynamics and drivers of coral and macroalgal cover on inshore reefs of the Great Barrier Reef Marine Park. Ecological Applications. e02008.

Chartrand, Katie, Rasheed, Michael, Bryant, Catherine, Pernice, Mathieu, and Ralph, Peter (2019) New science informing effective management of the often overlooked deep-water seagrasses of tropical Australia. In: [Presented at the Australian Marine Sciences Association 2019 Conference]. From: Australian Marine Sciences Association Conference 2019: Marine Science for a Blue Economy, 7-11 July 2019, Fremantle, WA, Australia.

Critchell, Kay, Hamann, Mark, Wildermann, Natalie, and Grech, Alana (2019) Predicting the exposure of coastal species to plastic pollution in a complex island archipelago. Environmental Pollution, 252, Part B. pp. 982-991.

Creighton, Colin, Prahalad, Vishnu N., McLeod, Ian, Sheaves, Marcus, Taylor, Matthew D., and Walshe, Terry (2019) Prospects for seascape repair: three case studies from eastern Australia. Ecological Management and Restoration, 20 (3).

Chartrand, K., Wells, J., Carter, A., and Rasheed, M. (2019) Seagrasses in Port Curtis and Rodds Bay 2018: Annual long-term monitoring. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alexandra, Coles, Robert, Grech, Alana, McKenna, Skye, Rasheed, Michael, McKenzie, Len, and Duke, Norman (2019) Spatial data as a baseline for managing coastal seagrasses in Queensland, Australia. In: [Presented at the CERF Biennial Conference]. From: The 25th Biennial CERF Conference, 3–7 November, 2019, Mobile, AL, USA.

Carter, A.B., Mellors, J.E., Reason, C., and Rasheed, M.A. (2019) Torres Strait Seagrass 2019 Report Card. Report. UNSPECIFIED, Cairns, QLD, Australia.

Collier, Catherine, Langlois, Lucas, Ow, Yan, Johansson, Charlotte, Giammusso, Manuela, Adams, Matthew, O'brien, Katherine, and Uthicke, Sven (2018) Losing a winner: thermal stress and local pressures outweigh the positive effects of ocean acidification for tropical seagrasses. New Phytologist, 219 (3). pp. 1005-1017.

Critchell, Kay, and Hoogenboom, Mia O. (2018) Effects of microplastic exposure on the body condition and behaviour of planktivorous reef fish (Acanthochromis polyacanthus). PLoS ONE, 13 (3). e0193308.

Cook, Peter G., Rodellas, Valentí, Adnrisoa, Aladin, and Stieglitz, Thomas C. (2018) Exchange across the sediment-water interface quantified from porewater radon profiles. Journal of Hydrology, 559. pp. 873-883.

Caron, Alexandra G.M., Thomas, Colette R., Berry, Kathryn L.E., Motti, Cherie A., Ariel, Ellen, and Brodie, Jon E. (2018) Ingestion of microplastic debris by green sea turtles (Chelonia mydas) in the Great Barrier Reef: validation of a sequential extraction protocol. Marine Pollution Bulletin, 127. pp. 743-751.

Chartrand, Kathryn M., Szabó, Milán, Sinutok, Sutinee, Rasheed, Michael A., and Ralph, Peter J. (2018) Living at the margins - the response of deep-water seagrasses to light and temperature renders them susceptible to acute impacts. Marine Environmental Research, 136. 126 - 138.

Carter, Alex, and Rasheed, Michael (2018) Mackay-Whitsunday 2017 Baseline Seagrass Survey: Marine Inshore South Zone. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Cook, Peter G., Rodellas, Valentí, and Stieglitz, Thomas C. (2018) Quantifying surface water, porewater, and groundwater interactions using tracers: tracer fluxes, water fluxes, and end‐member concentrations. Water Resources Research, 54 (3). pp. 2452-2465.

Ceccarelli, Daniela M., Loffler, Zoe, Bourne, David G., Al Moajil-Cole, Grace S., Boström Einarsson, Lisa, Evans-Illidge, Elizabeth, Fabricius, Katharina, Glasl, Bettina, Marshall, Paul, McLeod, Ian, Read, Mark, Schaffelke, Britta, Smith, Adam K., Jorda, Georgina T., Williamson, David H., and Bay, Line (2018) Rehabilitation of coral reefs through removal of macroalgae: state of knowledge and considerations for management and implementation. Restoration Ecology, 26 (5). pp. 827-838.

Chartrand, K.M., Rasheed, M.A., and Carter, A.B. (2018) Seagrasses in Port Curtis and Rodds Bay 2017: annual long-term monitoring. Report. James Cook University, Cairns, QLD, Australia.

Carter, A.B., Mellors, J.E., and Rasheed, M.A. (2018) Torres Strait Seagrass 2018 Report Card. Report. James Cook University, Cairns, QLD, Australia.

Carter, A.B., and Rasheed, M.A. (2018) Torres Strait Seagrass Long-term Monitoring: dugong sanctuary, Dungeness Reef and Orman Reefs. Report. James Cook University, Cairns, QLD, Australia.

Caron, Alexandra G.M., Thomas, Colette R., Berry, Kathryn L.E., Motti, Cherie A., Ariel, Ellen, and Brodie, Jon E. (2018) Validation of an optimised protocol for quantification of microplastics in heterogenous samples: a case study using green turtle chyme. MethodsX, 5. pp. 812-823.

Cooper, Michelle, Lewis, Stephen E., Stieglitz, Thomas C., and Smithers, Scott G. (2018) Variability of the useful life of reservoirs in tropical locations: a case study from the Burdekin Falls Dam, Australia. International Journal of Sediment Research, 33. pp. 93-106.

Carter, A.B., Collier, C., Rasheed, M.A., McKenzie, L., and Udy, J. (2018) A framework for defining seagrass habitat for the Great Barrier Reef, Australia. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Carter, A.B., Davies, C.R., Emslie, M.J., Mapstone, B.D., Russ, G.R., Tobin, A.J., and Williams, A.J. (2017) Reproductive benefits of no-take marine reserves vary with region for an exploited coral reef fish. Scientific Reports, 7. 9693. pp. 1-12.

Clarke, David A., York, Paul H., Rasheed, Michael A., and Northfield, Tobin D. (2017) Does biodiversity–ecosystem function literature neglect tropical ecosystems? Trends in Ecology & Evolution, 32 (5). pp. 320-323.

Cumming, Erin, Jarvis, Jessie C., Sherman, Craig, York, Paul H., and Smith, Timothy M. (2017) Seed germination in a southern Australian temperate seagrass. PeerJ, 5. e3114. pp. 1-19.

Cousins, Stephen, Kennard, Mark J., and Ebner, Brendan C. (2017) Depth-related composition and structuring of tropical riverine fish assemblages revealed by baited video. Marine and Freshwater Research, 68 (10). pp. 1965-1975.

Carter, Alex, Davies, Jaclyn, Jarvis, Jessie, McCormack, Catherine, and Rasheed, Michael (2017) Development of a condition report card for variable and diverse seagrass meadows in ports. In: Proceedings of the Australasian Coasts & Ports 2017 Conference. pp. 1152-1158. From: Australasian Coasts & Ports 2017 Conference: working with nature, 21-23 June 2017, Cairns, QLD, Australia.

Chartrand, K.M., Bryant, C.V., Sozou, A., Ralph, P.J., and Rasheed, M.A. (2017) Final Report: Deep-water seagrass dynamics - Light requirements, seasonal change and mechanisms of recruitment. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alex, Wells, Jaclyn, and Rasheed, Michael (2017) Gladstone Healthy Harbour Partnership 2017 Report Card, ISP011: seagrass. Report. James Cook University, Cairns, QLD, Australia.

Cairns, Andi, Davis, Linda, and Pearson, Richard (2017) Guide to the riffle invertebrates of Australian Wet Tropics streams with a bibliography of their ecology. Report. TropWater, Townsville, QLD, Australia.

Clarke, David A., York, Paul H., Rasheed, Michael A., and Northfield, Tobin D. (2017) Identifying areas of need in tropical research: a reply to Stroud and Feeley. Trends in Ecology & Evolution, 32 (9). p. 628.

Chartrand, Katie, Wells, Jaclyn, and Rasheed, Michael (2017) Long-Term Seagrass Monitoring in Port Curtis and Rodds Bay: Quarterly Permanent Transect Monitoring, 2009 to 2016 – Final Report. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Collier, Catherine J., Xiang, Yan Ow, Langlois, Lucas, Uthicke, Sven, Johansson, Charlotte, Hrebien, Victoria, O'Brien, Kate, and Adams, Matthew P. (2017) Optimum temperatures for net primary productivity of three tropical seagrass species. Frontiers in Plant Science, 8. 1446. pp. 1-32.

Cook, Benjamin D., Adams, Mark, Unmack, Peter J., Burrows, Damien, Pusey, Bradley J., Perna, Colton, and Hughes, Jane M. (2017) Phylogeography of the mouth-brooding freshwater fish Glossamia aprion (Apogonidae) in northern and eastern Australia: historical biogeography and allopatric speciation. Biological Journal of the Linnean Society, 121 (4). pp. 833-848.

Cooper, Michelle, Lewis, Stephen E., and Smithers, Scott G. (2017) Spatial and temporal dynamics of suspended sediment causing persistent turbidity in a large reservoir: Lake Dalrymple, Queensland, Australia. Marine and Freshwater Research, 68 (7). pp. 1377-1390.

Carter, A., Coles, R., McKenna, S., and Rasheed, M. (2017) Spatial management tools for coastal seagrasses in Queensland, Australia. In: Proceedings of the Australasian Coasts & Ports 2017 Conference. pp. 226-232. From: Proceedings of the Australasian Coasts & Ports 2017 Conference, 21-23 June 2017, Cairns, QLD, Australia.

Carter, A.B., Wells, J.N., and Rasheed, M.A. (2017) Torres Strait Seagrass – Dungeness Reef Baseline Survey and Dugong Sanctuary Long-term Monitoring. Report. James Cook University, Cairns, QLD, Australia.

Canning, A.D., Death, R.G., and Gardner, E.M. (2017) The effect of forest canopy and flood disturbance on New Zealand stream food web structure and robustness. Austral Ecology, 43 (3). pp. 352-358.

Collier, C.J., Adams, M.P., Langlois, L., Waycott, M., O'Brien, K.R., Maxwell, P.S., and McKenzie, L. (2016) Thresholds for morphological response to light reduction for four tropical seagrass species. Ecological Indicators, 67. pp. 358-366.

Chaiechi, Taha, Stoeckl, Natalie, Jarvis, Diane, Lewis, Stephen, and Brodie, Jon (2016) Assessing the impact of price changes and extreme climatic events on sediment loads in a large river catchment near the Great Barrier Reef. Australian Journal of Agricultural and Resource Economics, 60 (3). pp. 386-405.

Carter, Alex, Bryant, Catherine, Davies, Jaclyn, and Rasheed, Michael (2016) Gladstone Healthy Harbour Partnership 2016 Report Card: ISP011: seagrass. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Clayton, P.D., and Pearson, R.G. (2016) Harsh habitats? Waterfalls and their faunal dynamics in tropical Australia. Hydrobiologia, 775 (1). pp. 123-137.

Connolly, Rod, Dunn, Ryan, Jackson, Emma, Kristensen, Erik, Maxwell, Paul, Pearson, Ryan, Rasheed, Michael, and York, Paul (2016) Gold Coast Seagrass Sensitivities and Resilience (SRMP-003). Report. Griffith University, Gold Coast, QLD, Australia.

Connolly, Niall, Pearson, Richard, and Pearson, Benjamin (2016) Riparian vegetation and sediment gradients determine invertebrate diversity in streams draining an agricultural landscape. Agriculture, Ecosystems and Environment, 221. pp. 163-173.

Clark, Tara R., Leonard, Nicole D., Zhao, Jian-xin, Brodie, Jon, McCook, Laurence J., Wachenfeld, David R., Nguyen, Ai Duc, Markham, Hannah L., and Pandolfi, John M. (2016) Historical photographs revisited: a case study for dating and characterizing recent loss of coral cover on the inshore Great Barrier Reef. Scientific Reports, 6. 19285. pp. 1-14.

Carter, A.B, and Rasheed, M.A. (2016) Assessment of Key Dugong and Turtle Seagrass Resources in North-west Torres Strait. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Connolly, Rod, Dunn, Ryan, Flindt, Mogens, Jackson, Emma, Kristensen, Erik, McKenna, Skye, Olds, Andrew, Rasheed, Michael, Schlacher, Thomas, and York, Paul (2016) Assessment of the effects of foreshore nourishment and mitigation projects on seagrass ecosystems (SRMP-004). Report. Griffith University, Gold Coast, Australia.

Cooper, W.E., Kudo, H., and Duke, Norman C. (2016) Bruguiera hainesii C.G.Rogers (Rhizophoraceae), an endangered species recently discovered in Australia. Austrobaileya, 9 (4). pp. 481-488.

Collier, Catherine J., Langlois, Lucas, Zemoi, Rahel, Martin, Katherine, and McKenzie, Len (2016) Developing and refining biological indicators for condition assessments in an integrated monitoring program. Report. James Cook University, Cairns, Australia.

Collier, Catherine J., Chartrand, Katie, Honchin, Carol, Fletcher, Adam, and Rasheed, Michael (2016) Light thresholds for seagrasses of the GBRWHA: a synthesis and guiding document. Report. James Cook University, Cairns, Australia.

Chartrand, Kathryn M., Bryant, Catherine V., Carter, Alexandra B., Ralph, Peter J., and Rasheed, Michael A. (2016) Light thresholds to prevent dredging impacts on the Great Barrier Reef seagrass, Zostera muelleri ssp. capricorni. Frontiers in Marine Science, 3. 106.

Connolly, Rod, Dunn, Ryan, Kovacs, Eva, Maxwell, Paul, McKenna, Skye, Phinn, Stuart, Rasheed, Michael, Roelfsema, Chris, and York, Paul (2016) Marine plant habitat and monitoring program (SRMP-002)[Report to Gold Coast Waterways Authority]. Report. Griffith University, Gold Coast, Australia.

Critchell, Kay, and Lambrechts, Jonathan (2016) Modelling accumulation of marine plastics in the coastal zone; what are the dominant physical processes? Estuarine, Coastal and Shelf Science , 171. pp. 111-122.

Capon, Samatha, James, Cassandra, and George, Amy (2016) Riverine trees and shrubs. In: Capon, Samatha J., James, Cassandra S., and Reid, Michael, (eds.) Vegetation of Australian Riverine Landscapes: biology, ecology and management. CSIRO Publishing, Melbourne, VIC, Australia, pp. 119-141.

Carter, Alex B., McKenna, Skye A., Rasheed, Michael A., McKenzie, Len J., and Coles, Robert G. (2016) Seagrass mapping synthesis: a resource for coastal management in the Great Barrier Reef World Heritage Area. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Coles, R.G., Rasheed, M.A., Grech, A., and McKenzie, L.J. (2016) Seagrass meadows of northeastern Australia. In: Finlayson, C.M., Milton, G.R., Prentice, R.C., and Davidson, N.C., (eds.) The Wetland Book: distribution description and conservation. Springer, Dordrecht, The Netherlands, pp. 1-9.

Chartrand, Katie, Rasheed, Michael, and Ralph, Peter (2016) Under pressure...how to succeed as a deepwater seagrass. In: [Presented at the 13th International Coral Reef Symposium]. From: 13th International Coral Reef Symposium, 19-24 June 2016, Honolulu, HI, USA.

Capon, Samatha J., Porter, John, and James, Cassandra S. (2016) Vegetation of Australia's desert river landscapes. In: Capon, Samatha J., James, Cassandra S., and Reid, Michael, (eds.) Vegetation of Australian Riverine Landscapes: biology, ecology and management. CSIRO Publishing, Melbourne, VIC, Australia, pp. 239-258.

Carter, A.B., Coles, R.G., McKenna, S.A., and Rasheed, M.A. (2016) A spatial management tool for seagrasses in the Great Barrier Reef World Heritage Area. In: International Coral Reef Symposium: abstract book. 27805. p. 52. From: 13th International Coral Reef Symposium, 19-24 June 2016, Honolulu, HI, USA.

Connolly, N.M., Pearson, R.G., Loong, D., Maughan, M., and Brodie, J. (2015) Water quality variation along streams with similar agricultural development but contrasting riparian vegetation. Agriculture, Ecosystems and Environment, 213. pp. 11-20.

Critchell, K., Grech, A., Schlaefer, J., Andutta, F.P., Lambrechts, J., Wolanski, E., and Hamann, M. (2015) Modelling the fate of marine debris along a complex shoreline: lessons from the Great Barrier Reef. Estuarine, Coastal and Shelf Science , 167 (Part B). pp. 414-426.

Carter, A.B., Davies, J.D., Bryant, C.V., Jarvis, J.C., McKenna, S.A., and Rasheed, M.A. (2015) Seagrasses in Port Curtis and Rodds Bay 2014: annual long-term monitoring, biannual western basin, and updated baseline survey. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Coles, Robert G., Rasheed, Michael A., McKenzie, Len J., Grech, Alana, York, Paul H., Sheaves, Marcus, McKenna, Skye, and Bryant, Catherine (2015) The Great Barrier Reef World Heritage Area seagrasses: managing this iconic Australian ecosystem resource for the future. Estuarine, Coastal and Shelf Science , 153. A1-A12.

Carter, Alex, Bryant, Catherine, Jarvis, Jessie, York, Paul, and Rasheed, Michael (2015) Developing thresholds and indicators of seagrass meadow condition using long-term monitoring data. In: Abstracts from the 52nd Australian Marine Science Association Annual Conference. p. 90. From: AMSA 2015: 52nd Australian Marine Science Association Annual Conference, 5-9 July 2015, Geelong, VIC, Australia.

Carter, Alex, Jarvis, Jessie, Bryant, Catherine, and Rasheed, Michael (2015) Development of seagrass indicators for the Gladstone Healthy Harbour Partnership report card. Report. James Cook University, Cairns, QLD, Australia.

Creighton, Colin, Boon, Paul I., Brookes, Justin D., and Sheaves, Marcus (2015) Repairing Australia's estuaries for improved fisheries production: what benefits, at what cost? Marine and Freshwater Research, 66 (6). pp. 493-507.

Chartrand, K.M., Ralph, P.J., and Rasheed, M.A. (2015) Under pressure – How to succeed as a deepwater seagrass. In: [Presented at CERF 2015]. From: CERF 2015: Grand Challenges in Coastal & Estuarine Science: Securing Our Future, 8-12 November 2015, Portland, Oregon USA.

Carter, Alex, Taylor, Helen, and Rasheed, Michael (2014) Torres Strait mapping: seagrass consolidation: 2002-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, A.B., Taylor, H.A., McKenna, S.A., York, P.Y., and Rasheed, M.A. (2014) The effects of climate on seagrasses in the Torres Strait: 2011-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alex, Taylor, Helen, and Rasheed, Michael (2014) Torres Strait dugong sanctuary: deepwater seagrass monitoring 2010-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, A.B., Taylor, H.A., McKenna, S.A., and Rasheed, M.A. (2014) Long-term seagrass monitoring in the Port of Thursday Island: March 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Cullen-Unsworth, Leanne C., Nordlund, Lina Mtwana, Paddock, Jessica, Baker, Susan, McKenzie, Len, and Unsworth, Richard K.F. (2014) Seagrass meadows globally as a coupled social–ecological system: implications for human wellbeing. Marine Pollution Bulletin, 83 (2). pp. 387-397.

Carter, Alex, and Rasheed, Michael (2014) Critical marine habitats in high risk areas, South Warden Reef to Howick Group region: 2013 atlas. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alex B., Davies, Campbell R., Mapstone, Bruce D., Russ, Garry R., Tobin, Andrew J., and Williams, Ashley J. (2014) Effects of region, demography, and protection from fishing on batch fecundity of common coral trout (Plectropomus leopardus). Coral Reefs, 33 (3). pp. 751-763.

Collier, Catherine J., Devlin, Michelle, Langlois, Lucas, McKenzie, Len J., Petus, Caroline, Da Silva, Eduardo Teixeira, McMahon, Kathryn, Adams, Matthew, O'Brien, Kate, Statton, John, and Waycott, Michelle (2014) Final report on thresholds and indicators of declining water quality as tools for tropical seagrass management. Report. James Cook University, Townsville, Australia.

Carter, A.B., Russ, G.R., Tobin, A.J., Williams, A.J., Davies, C.R., and Mapstone, B.D. (2014) Spatial variation in the effects of size and age on reproductive dynamics of common coral trout Plectropomus leopardus. Journal of Fish Biology, 84 (4). pp. 1074-1098.

Coles, Rob, Short, Fred, Miguel, Fortes, and Kuo, John (2014) Twenty years of seagrass networking and advancing seagrass science: the International Seagrass Biology Workshop Series. Pacific Conservation Biology, 20 (1). pp. 8-16.

Carter, Alex, Taylor, Helen, McKenna, Skye, York, Paul, and Rasheed, Michael (2014) The effect of climate on seagass in the Torres Strait: 2011-2014. Report. TropWATER, Cairns, QLD, Australia.

Calver, Michael C., Beatty, Stephen J., Bryant, Kate A., Dickman, Christopher R., Ebner, Brendan C., and Morgan, David L. (2013) Users beware: implications of database errors when assessing the individual research records of ecologists and conservation biologists. Pacific Conservation Biology, 19 (3/4). pp. 320-330.

Chartrand, K., McCormack, C., Thomas, R., Rasheed, M., and Ralph, P. (2013) Environmental tolerances and drivers of deepwater seagrass change: implications and tools for coastal development management. In: 22nd Biennial Conference of the Coastal and Estuarine Research Federation: abstract book. p. 39. From: CERF2013 Toward Resilient Coasts and Estuaries, Science for Sustainable Solutions, 3-7 November 2013, San Diego, California.

Cooke, Steven J., Midwood, Jonathan D., Thiem, Jason D., Klimley, Peter, Lucas, Martin C., Thorstad, Eva B., Eiler, John, Holbrook, Chris, and Ebner, Brendan C. (2013) Tracking animals in freshwater with electronic tags: past, present and future. Animal Biotelemetry, 1 (May). 5. pp. 1-19.

Carter, A.B., McKenna, S.A., and Rasheed, M.A. (2013) Port of Weipa long‐term seagrass monitoring: August 2012. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alex, Taylor, Helen, McKenna, Skye, and Rasheed, Michael (2013) Critical marine habitats in high risk areas, Torres Strait: Seo Reef to Kai-Wareg Reef: 2013 atlas. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alex, and Rasheed, Michael (2013) Critical marine habitats in high risk areas: Bathurst Bay region: 2012 atlas. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Chartrand, Katie, Ralph, Peter, Petrou, Katherina, and Rasheed, Michael (2012) Development of a Light-Based Seagrass Management Approach for the Gladstone Western Basin Dredging Program. Report. Queensland Department of Agriculture, Fisheries and Forestry, Cairns, QLD, Australia.

Carter, Alex, Mapstone, Bruce, Russ, Garry, Tobin, Andrew, and Williams, Ashley (2012) Reproductive benefits of no-take reserves vary atitudinally for Plectropomus leopardus. In: Abstracts from the 12th International Coral Reef Symposium. pp. 259-260. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Carroll, Chris, Waters, David, Vardy, Suzanne, Silburn, David M., Attard, Steve, Thorburn, Peter J., Davis, Aaron M., Halpin, Neil, Schmidt, Michael, Wilson, Bruce, and Clark, Andrew (2012) A paddock to reef monitoring and modelling framework for the Great Barrier Reef: paddock and catchment component. Marine Pollution Bulletin, 65 (4-9). pp. 136-149.

Carter, Alex, Carton, Guy, Russ, Garry, Tobin, Andrew, and Williams, Ashley (2011) Significant variation in spawning frequency of common coral trout, Plectropomus leopardus, on the Great Barrier Reef. In: Abstracts from the 48th Annual Conference of the Australian Marine Sciences Association. p. 35. From: AMSA 2011: 48th Annual Conference of the Australian Marine Sciences Association, 3-7 July 2011, Fremantle, WA, Australia.

Costanza, R., Bohensky, E., Butler, J.R.A., Bohnet, I., Delisle, A., Fabricius, K., Gooch, M., Kubiszewski, I., Lukacs, G., Pert, P., and Wolanski, E. (2011) A scencario analysis of climate change and ecosystem services for the Great Barrier Reef. In: Wolanski, Eric, McLusky, Donald, van den Belt, M., and Costanza, R., (eds.) Ecological Economics of Estuaries and Coasts. Treatise on Estuarine and Coastal Science, 12 . Academic Press, London, UK, pp. 305-326.

Chen, Zhongyuan, Yanagi, Tetsuo, and Wolanski, Eric (2010) EMECS8 – harmonizing catchment and estuary. Estuarine, Coastal and Shelf Science, 86 (3). v-v.

Carter, Alexandra, Mapstone, Bruce, Russ, Garry, Tobin, Andrew, and Williams, Ashley (2009) Regional variation in the benefit of no-take marine reserves on reproductive output of the common coral trout, Plectropomus leopardus. In: Abstracts from the Australian National Network in Marine Science Inaugural Conference. From: ANNIMS 2009: Australian National Network in Marine Science Inaugural Conference, 1-2 December 2009, Hobart, TAS, Australia.

Cannicci, Stefano, Burrows, Damien, Fratini, Sara, Smith III, Thomas J., Offenberg, Joachim, and Dahdouh-Guebas, Farid (2008) Faunal impact on vegetation structure and ecosystem function in mangrove forests: a review. Aquatic Botany, 89 (2). pp. 189-200.

Coughlin, Tom, O'Reagain, Peter, Nelson, Brigid, Butler, Barry, and Burrows, Damien (2008) Managing for Water Quality within Grazing Lands for the Burdekin Catchment: guidelines for land managers. Report. Burdekin Solutions, Townsville, QLD, Australia.

Connolly, Niall M., and Pearson, Richard G. (2007) The effect of fine sedimentation on tropical stream macroinvertebrate assemblages: a comparison using flow-through artificial stream channels and recirculating mesocosms. Hydrobiologia, 592 (1). pp. 423-438.

Coles, Rob, Grech, Alana, Dew, Kara, Zeller, Brad, and McKenzie, Leonard (2007) A preliminary report on the adequacy of protection provided to species and benthic habitats in the east coast otter trawl fishery by the current system of closures. Report. UNSPECIFIED, Cairns, QLD, Australia.

Cappo, Mike, De'ath, Glenn, Boyle, Steve, Aumend, James, Olbrich, Roland, Hoedt, Frank, Perna, Colton, and Brunskill, Gregg (2005) Development of a robust classifier of freshwater residence in barramundi (Lates calcarifer) life histories using elemental ratios in scales and boosted regression trees. Marine and Freshwater Research, 56 (5). pp. 713-723.

Cooper, Michelle, Faithful, John W., and Shields, Graham (2005) Sediment dynamics of a large tropical river system: the Burdekin River and Lake Dalrymple, Australia. In: Proceedings of 10th International Symposium on the interactions between sediments and water. p. 198. From: 10th International Symposium on the interactions between sediments and water, 28 August - 2 September 2005, Bled, Slovenia.

Connolly, N. M., Crossland, M.R., and Pearson, R.G. (2004) Effect of low dissolved oxygen on survival, emergence, and drift of tropical stream macroinvertebrates. Journal of the North American Benthological Society, 23 (2). pp. 251-270.

Connor, Ron, Milsom, John, Melzer, Alistair, Butler, Barry M., Faithful, John W., Dennison, William, Lloyd, Trevor, and Swaine, Greg (2003) Ecosystem-based assessment and management of marine and estuarine systems at the Queensland Nickel Yabulu Refinery, Townsville. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.

Cairns, A., Richards, M., and Lukacs, G. (2000) Catchment study - Gustav Creek, Magnetic Island. Report. James Cook University, Townsville, QLD, Australia.

Crees, M.R., Kapitzke, I.R., Smithers, S.G., and Pearson, R.G. (1998) Burdekin River Kierle Road bank remediation concept design. Report. James Cook University, Townsville, QLD, Australia.

Connolly, Niall, Doak, Naomi, and Pearson, Richard (1996) Environmental literature scan of the Barron River Catchment. Report. James Cook University, Townsville, QLD, Australia.

Crees, Mark, and Butler, Barry (1996) Feasibilty of using constructed wetlands for the treatment of effluent at Horseshoe Bay. Report. James Cook University, Townsville, QLD, Australia.

Clayton, P.D., and Pearson, R.G. (1996) Instream effects of dunder application to canefields in the Sarina region, Queensland: continued monitoring. Report. James Cook University, Townsville, QLD, Australia.

Critchell, Kay Lilian (2018) Using hydrodynamic models to understand the impacts and risks of plastic pollution. PhD thesis, James Cook University.

D

Duke, Norman, and Lee, Shing Yip (2024) 2.4. The diversity of mangroves. Towards an authoritative list of the world’s mangrove plants. Report Section. Global Mangrove Alliance.

Duke, Norman C., Canning, Adam D., and Mackenzie, Jock R. (2024) More intense severe tropical cyclones in recent decades cause greater impacts on mangroves bordering Australia’s Great Barrier Reef. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, Florida, USA, pp. 226-253.

De Brauwer, Maarten, Clarke, Laurence J., Chariton, Anthony, Cooper, Madalyn K., De Bruyn, Mark, Furlan, Elise, Macdonald, Anna J., Rourke, Meaghan L., Sherman, Craig D.H., Suter, Leonie, Villacorta Rath, Cecilia, Zaiko, Anastasija, and Trujillo-González, Alejandro (2023) Best practice guidelines for environmental DNA biomonitoring in Australia and New Zealand. Environmental DNA, 5 (3). pp. 417-423.

de la Fuente Pinero, Alejandro, and Williams, Stephen E. (2023) Climate change threatens the future of rain forest ringtail possums by 2050. Diversity and Distributions, 29 (1). pp. 173-183.

Douglas, Sophia R.L., Tebbett, Sterling B., Choukroun, Severine, Goatley, Christopher H.R., and Bellwood, David R. (2023) Depth stratified light trap sampling reveals variation in the depth distribution of late-stage cryptobenthic reef fish larvae. Coral Reefs, 42 (2). pp. 507-512.

Duke, Norman C., Virly, Sabrina, and Tracey, Dieter (2023) New Caledonian mangroves: A treasure to protect. MangroveWatch Publications, Currumbin, Queensland, Australia.

Donaldson, James C., Maeda, Ken, Iida, Midori, Kobayashi, Hirozumi, Ebner, Brendan C., and Tran, Hau Duc (2023) New distributional records of four amphidromous gobies (Gobioidei: Sicydiinae) in continental Vietnam / Nouvelles occurrences pour quatre gobies amphidromes (Gobioidei : Sicydiinae) au Vietnam continental. Cybium, 47 (4). pp. 467-472.

Duarte de Paula Costa, Micheli, Adame, Maria Fernanda, Bryant, Catherine V., Hill, Jack, Kellaway, Jeffrey J., Lovelock, Catherine E., Ola, Anne, Rasheed, Michael A., Salinas, Christian, Serrano, Oscar, Waltham, Nathan, York, Paul H., Young, Mary, and Macreadie, Peter (2023) Quantifying blue carbon stocks and the role of protected areas to conserve coastal wetlands. Science of the Total Environment, 874. 162518.

Devlin, Michelle J., Petus, Caroline, and Oubelkheir, Kadija (2023) Special Issue Overview: Advances in Remote Sensing and Mapping for Integrated Studies of Reef Ecosystems in Oceania (Great Barrier Reef and Beyond). Remote Sensing, 15 (10). 2505.

Duke, Norman (2022) Climate change killed 40 million Australian mangroves in 2015. Here’s why they’ll probably never grow back. The Conversation, 28 July 2022.

Duke, Norman Clive, Mackenzie, Jock R., Canning, Adam, Hutley, Lindsay B., Bourke, Adam J., Kovacs, John, Cormier, Riley, Staben, Grant, Lymburner, Leo, and Ai, Emma (2022) ENSO-driven extreme oscillations in mean sea level destabilise critical shoreline mangroves—An emerging threat. PLOS Climate, 1 (8). e0000037.

Derville, Solene, Cleguer, Christophe, and Garrigue, Claire (2022) Ecoregional and temporal dynamics of dugong habitat use in a complex coral reef lagoon ecosystem. Scientific Reports, 12. 552.

Deutsch, Charles J., Castelblanco-Martinez, Delma Nataly, Cleguer, Christophe, and Groom, Rachel (2022) Movement Behavior of Manatees and Dugongs: II. Small-Scale Movements Reflect Adaptations to Dynamic Aquatic Environments. In: Marsh, Helene, (ed.) Ethology and Behavioural Ecology of Sirenia. Ethology and Behavioral Ecology of Marine Mammals . Springer Nature, Cham, Switzerland, pp. 233-298.

Davis, Meredith T., Canning, Adam D., Midwinter, Anne C., and Death, Russell G. (2022) Nitrate enrichment does not affect enteropathogenic Escherichia coli in aquatic microcosms but may affect other strains present in aquatic habitats. PeerJ, 10. e13914.

Duke, Norman C., McKenzie, Jock, Canning, Adam, Kovacs, John, Cormier, Riley, and Castle, Ysabel (2022) PCPA CHAMP – Port Curtis and Port Alma coastal habitat archive and monitoring program – Final Report. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Dubuc, Alexia, Collins, Geoffrey, Coleman, Laura, Waltham, Nathan J., Rummer, Jodie L., and Sheaves, Marcus (2021) Association between physiological performance and short temporal changes in habitat utilisation modulated by environmental factors. Marine Environmental Research, 170. 105448.

Dalby, Oliver, Sinha, Isadora, Unsworth, Richard K.F., McKenzie, Len J., Jones, Benjamin L., and Cullen-Unsworth, Leanne C. (2021) Citizen science driven big data collection requires improved and inclusive societal engagement. Frontiers in Marine Science, 8. 610397.

Duarte de Paula Costa, Micheli, Lovelock, Catherine E., Waltham, Nathan J., Young, Mary, Adame, Maria F., Bryant, Catherine V., Butler, Don, Green, David, Rasheed, Michael A., Salinas, Cristian, Serrano, Oscar, York, Paul H., Whitt, Ashley A., and Macreadie, Peter I. (2021) Current and future carbon stocks in coastal wetlands within the Great Barrier Reef catchments. Global Change Biology, 27 (14). pp. 3257-3271.

Dunstan, Laura, Pulman, Lisa, Waltham, Nathan, and Sargent, Sue (2021) Finding the sweet spot: Can social marketing encourage cane farmers to change practices for water quality outcomes in the Great Barrier Reef Catchment? In: Hay, Rachel, Eagle, Lynne, and Bhati, Abhishek, (eds.) Broadening Cultural Horizons in Social Marketing: comparing case studies from Asia-Pacific. Springer, Singapore, pp. 29-46.

Duarte de Paula Costa, Micheli, Lovelock, Catherine E., Waltham, Nathan C., Moritsch, Monica, Butler, Don, Power, Trent, Thomas, Evan, and Macreadie, Peter I. (2021) Modelling blue carbon farming opportunities at different spatial scales. Journal of Environmental Management, 301. 113813.

Duke, Norman C., Hutley, Lindsay B., Mackenzie, Jock R., and Burrows, Damien (2021) Processes and factors driving change in mangrove forests: an evaluation based on the mass dieback event in Australia’s Gulf of Carpentaria. In: Canadell, Josep G., and Jackson, Robert B., (eds.) Ecosystem Collapse and Climate Change. Ecological Studies, 241 . Springer International Publishing, Cham, Switzerland, pp. 221-264.

Davis, Aaron M., Webster, Anthony J., Fitch, Peter, Fielke, Simon, Taylor, Bruce M., Morris, Sheriden, and Thorburn, Peter J. (2021) The changing face of science communication, technology, extension and improved decision-making at the farm-water quality interface. Marine Pollution Bulletin, 169. 112534.

Devlin, Michelle J., Lyons, Brett P., Johnson, Johanna, and Hills, Jeremy (2021) The tropical Pacific Oceanscape: Current issues, solutions and future possibilities. Marine Pollution Bulletin, 166. 112181. pp. 1-10.

Devlin, Michelle, Smith, Andy, Graves, Carolyn A., Petus, Caroline, Tracey, Dieter, Maniel, Michael, Hooper, Eryn, Kotra, Kryshna, Samie, Erie, Loubser, David, and Lyons, Brett P. (2020) Baseline assessment of coastal water quality, in Vanuatu, South Pacific: insights gained from in-situ sampling. Marine Pollution Bulletin, 160. 111651.

Davis, Aaron M., Pusey, Bradley J., and Betancur-R, Ricardo (2020) Effects of adoption of freshwater residency on life-history ecology of terapontid grunters. Freshwater Biology, 65. pp. 1139-1152.

Duke, Norman (2020) Mangrove harbingers of coastal degradation seen in their responses to global climate change coupled with ever-increasing human pressures. Human Ecology Journal of the Commonwealth Human Ecology Council – Mangrove Special Issue, 30 (April 2020). pp. 19-23.

Dahdouh-guebas, Farid, Ajonina, Gordon N., Amir, A. Aldrie, Andradi-brown, Dominic A., Aziz, Irfan, Balke, Thorsten, Barbier, Edward B., Cannicci, Stefano, Cragg, Simon M., Cunha-Lignon, Marília, Curnick, David J., Duarte, Carlos M., Duke, Norman C., Endsor, Charlie, Fratini, Sara, Feller, Ilka C., Fromard, François, Hugé, Jean, Huxham, Mark, Kairo, James G., Kajita, Tadashi, Kathiresan, Kandasamy, Koedam, Nico, Lee, Shing Yip, Lin, Hsing-Juh, Mackenzie, Jock R., Mangora, Mwita M., Marchand, Cyril, Meziane, Tarik, Minchinton, Todd E., Pettorelli, Nathalie, Polanía, Jaime, Polgar, Gianluca, Poti, Meenakshi, Primavera, Jurgenne, Quarto, Alfredo, Rog, Stefanie M., Satyanarayana, Behara, Schaeffer-Novelli, Yara, Spalding, Mark D., Van der Stocken, Tom, Wodehouse, Dominic, Yong, Jean W.H., Zimmer, Martin, and Friess, Daniel A. (2020) Public perceptions of mangrove forests matter for their conservation. Frontiers in Marine Science, 7. 603651.

de los Santos, Carmen, Scott, Abigail, Arias-Ortiz, Ariane, Jones, Benjamin, Kennedy, Hilary, Mazarrasa, Inés, McKenzie, Len, Nordlund, Lina, de la Torre-Castro, Maricela, Unsworth, Richard, and Ambo-Rappe, Rohani (2020) Seagrass ecosystem services: Assessment of scale and benefits. Report Section. UNEP, Nairobi, Kenya.

Duke, N.C. (2020) A systematic revision of the vulnerable mangrove genus Pelliciera (Tetrameristaceae) in equatorial America. Blumea, 65. pp. 107-120.

Dubuc, Alexia, Baker, Ronald, Marchand, Cyril, Waltham, Nathan J., and Sheaves, Marcus (2019) Hypoxia in mangroves: occurrence and impact on valuable tropical fish habitat. Biogeosciences, 16 (20). pp. 3959-3976.

Donaldson, James A., Drews, Paulo, Bradley, Michael, Morgan, David L., Baker, Ronald, and Ebner, Brendan C. (2019) Countering low visibility in video survey of an estuarine fish assemblage. Pacific Conservation Biology, 26 (2). pp. 190-200.

Dunn, Ryan J.K., Welsh, David T., Teasdale, Peter R., Gilbert, Franck, Poggiale, Jean-Christopher, and Waltham, Nathan J. (2019) Effects of the bioturbating marine yabby Trypaea australiensis on sediment properties in sandy sediments receiving mangrove leaf litter. Journal of Marine Science and Engineering, 7 (12). 426.

David, Marine, Bailly-Comte, Vincent, Munaron, Dominique, Fiandrino, Annie, and Stieglitz, Thomas C. (2019) Groundwater discharge to coastal streams – a significant pathway for nitrogen inputs to a hypertrophic Mediterranean coastal lagoon. Science of the Total Environment, 677. pp. 142-155.

Devloo-Delva, Floriaan, Huerlimann, Roger, Chua, Gladys, Matley, Jordan K., Heupel, Michelle R., Simpfendorfer, Colin A., and Maes, Gregory E. (2019) How does marker choice affect your diet analysis: comparing genetic markers and digestion levels for diet metabarcoding of tropical-reef piscivores. Marine and Freshwater Research, 70 (1). MF17209. pp. 8-18.

Duke, N.C., and Larkum, A.W.D. (2019) Mangroves and seagrasses. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO, Melbourne, VIC, Australia, pp. 219-228.

Dubuc, Alexia, Waltham, Nathan J., Baker, Ronald, Marchand, Cyril, and Sheaves, Marcus (2019) Patterns of fish utilisation in a tropical IndoPacific mangrove-coral seascape, New Caledonia. PLoS ONE, 14 (4). e0207168.

Devlin, Michelle J., Lyons, Brett P., Bacon, John, Edmonds, Nathan, Tracey, Dieter, Al Zaidan, Abdullah S., Al Ajmi, Fahad, Al-Wazzan, Zainab A., Al-Hussain, Mona M., Al Khaled, Hessa, and Le Quesne, Will J.F. (2019) Principles to enable comprehensive national marine ecosystem status assessments from disparate data: the state of the marine environment in Kuwait. Estuarine, Coastal and Shelf Science, 230. 106407.

Dunn, Ryan J.K., Waltham, Nathan J., Huang, Jianyin, Teasdale, Peter R., and King, Brian A. (2019) Protecting water quality in urban estuaries: Australian case studies. In: Wolanski, Eric, Day, John W., Elliott, Michael, and Ramachandran, Ramesh, (eds.) Coasts and Estuaries: the future. Elsevier, Oxford, United Kingdom, pp. 69-86.

Davis, Aaron M., and Neelamraju, Catherine (2019) Quantifying water quality improvements through use of precision herbicide application technologies in a dry-tropical, furrow-irrigated cropping system. Water, 11 (11). 2326.

Duke, Norman C., Field, Colin, Mackenzie, Jock R., Meynecke, Jan-Olaf, and Wood, Apanie L. (2019) Rainfall and its possible hysteresis effect on the proportional cover of tropical tidal wetland mangroves and saltmarsh-saltpans. Marine and Freshwater Research, 70. pp. 1047-1055.

Dujon, Antoine M., Stieglitz, Thomas C., Amice, Erwan, and Webber, D.M. (2019) Snail leaps and bounds: drivers of the diel movement pattern of a large invertebrate, the Caribbean queen conch (Lobatus gigas), in a marginal inshore habitat. Canadian Journal of Zoology, 97 (5). pp. 436-445.

Duffy, J. Emmett, Benedetti-Cecchi, Lisandro, Trinanes, Joaquin, Muller-Karger, Frank E., Ambo-Rappe, Rohani, Boström, Christoffer, Buschmann, Alejandro H., Byrnes, Jarrett, Coles, Robert G., Creed, Joel, Cullen-Unsworth, Leanne C., Diaz-Pulido, Guillermo, Duarte, Carlos M., Edgar, Graham J., Fortes, Miguel, Goni, Gustavo, Hu, Chuanmin, Huang, Xiaoping, Hurd, Catriona L., Johnson, Craig, Konar, Brenda, Krause-Jensen, Dorte, Krumhansl, Kira, Macreadie, Peter, Marsh, Helene, McKenzie, Len J., Mieszkowska, Nova, Miloslavich, Patricia, Montes, Enrique, Nakaoka, Masahiro, Norderhaug, Kjell Magnus, Norlund, Lina M., Orth, Robert J., Prathep, Anchana, Putman, Nathan F., Samper-Villarreal, Jimena, Serrao, Ester A., Short, Frederick, Pinto, Isabel Sousa, Steinberg, Peter, Stuart-smith, Rick, Unsworth, Richard K.F., van Keulen, Mike, van Tussenbroek, Brigitta I., Wang, Mengqiu, Waycott, Michelle, Weatherdon, Lauren V., Wernberg, Thomas, and Yaakub, Siti Maryam (2019) Toward a coordinated global observing system for seagrasses and marine macroalgae. Frontiers in Marine Science, 6. 317. pp. 1-26.

Dale, Pat, Sporne, Ilva, Knight, Jon, Sheaves, Marcus, Eslami-Andergoli, Leila, and Dwyer, Patrick (2019) A conceptual model to improve links between science, policy and practice in coastal management. Marine Policy, 103. pp. 42-49.

Dale, Allan P., Vella, Karen, Gooch, Margaret, Potts, Ruth, Pressey, Robert L., Brodie, Jon, and Eberhard, Rachel (2018) Avoiding implementation failure in catchment landscapes: a case study in governance of the Great Barrier Reef. Environmental Management, 62. pp. 70-81.

Davis, Aaron M., Pusey, Brad J., and Pearson, Richard G. (2018) Big floods, big knowledge gap: food web dynamics in a variable river system. Ecology of Freshwater Fish, 27 (4). pp. 898-909.

Duke, N.C., and Kudo, H. (2018) Bruguiera × dungarra, a new hybrid between mangrove species B. exaristata and B. gymnorhiza (Rhizophoraceae) recently discovered in north-east Australia. Blumea, 63. pp. 279-285.

Duke, Norman C., and Mackenzie, Jock (2018) ECY Report 2017. Final report: East Cape York shoreline environmental surveys. External Commissioned Report. James Cook University, Townsville, QLD, Australia.

Davey, P.A., and Rasheed, M.A. (2018) Port of Abbot Point Long-Term Seagrass Monitoring Program - 2017: A Report for North Queensland Bulk Ports Corporation. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Daly, Ryan, Smale, Malcolm J., Singh, Sarika, Anders, Darrell, Shivji, Mahmood, Daly, Clare A.K., Lea, James S.E., Sousa, Lara L., Wetherbee, Bradley M., Fitzpatrick, Richard, Clarke, Christopher R., Sheaves, Marcus, and Barnett, Adam (2018) Refuges and risks: evaluating the benefits of an expanded MPA network for mobile apex predators. Diversity and Distributions, 24 (9). pp. 1217-1230.

Death, Russell, Canning, Adam, Magierowski, Regina, and Tonkin, Jonathan (2018) Why aren't we managing water quality to protect ecological health? In: [Presented at the 31st Annual FLRC Workshop]. From: 31st Annual FLRC Workshop, 7-9 February 2018, Auckland, New Zealand.

Datry, T., Foulquier, A., Corti, R., von Schiller, D., Tockner, K., Mendoza-Lera, C., Clement, J.C., Gessner, M.O., Moleon, M., Stubbington, R., Gucker, B., Albarino, R., Allen, D.C., Altermatt, F., Arce, M.I., Arnon, S., Banas, D., Banegas-Medina, A., Beller, E., Blanchette, M.L., Blanco-Libreros, J.F., Blessing, J.J., Boechat, I.G., Boersma, K.S., Bogan, M.T., Bonada, N., Bond, N.R., Brintrup Barria, K.C., Bruder, A., Burrows, R.M., Cancellario, T., Canhoto, C., Carlson, S.M., Cauvy-Fraunie, S., Cid, N., Danger, M., de Freitas Terra, Bianca, De Girolamo, A.M., de La Barra, Evans, del Campo, R., Diaz-Villanueva, V.D., Dyer, F., Elosegi, A., Faye, E., Febria, C., Four, B., Gafny, S., Ghate, S.D., Gomez, R., Gomez-Gener, L., Graça, M.A.S., Guareschi, S., Hoppeler, F., Hwan, J.L., Kubheka, S., Laini, A., Langhans, S.D., Leigh, C., Little, C.J., Lorenz, S., Marshall, J.C., Martin, E., McIntosh, A.R., Meyer, E.I., Milisa, M., Mlambo, M.C., Morais, M., Moya, N., Negus, P.M., Niyogi, D.K., Papatheodoulou, A., Pardo, I., Paril, P., Pauls, S.U., Pesic, V., Polasek, M., Robinson, C.T., Rodriguez-Lozano, P., Rolls, R.J., Sanchez-Montoya, M.M., Savic, A., Shumilova, O., Shridhar, K.R., Steward, A.L., Storey, R., Taleb, A., Uzan, A., Vander Vorste, Ross, Waltham, Nathan, Woelfle-Erskine, C., Zak, D., Zarfl, C., and Zoppini, A. (2018) A global analysis of terrestrial plant litter dynamics in non-perennial waterways. Nature Geoscience, 11. pp. 497-503.

Davey, Peter A., Pernice, Mathieu, Ashworth, Justin, Kuzhiumparambil, Unnikrishnan, Szabó, Milán, Dolferus, Rudy, and Ralph, Peter J. (2018) A new mechanistic understanding of light-limitation in the seagrass Zostera muelleri. Marine Environmental Research, 134. pp. 55-67.

Dunbar, Kimberley, Baker, Ronnie, and Sheaves, Marcus (2017) Effects of forest width on fish use of fringing mangroves in a highly urbanised tropical estuary. Marine and Freshwater Research, 68 (9). pp. 1764-1770.

Duke, Norman (2017) Climate calamity along Australia's gulf coast. Landscape Architecture Australia, 153. pp. 66-71.

Dubuc, Alexia, Waltham, Nathan, Malerba, Martino, and Sheaves, Marcus (2017) Extreme dissolved oxygen variability in urbanised tropical wetlands: the need for detailed monitoring to protect nursery ground values. Estuarine, Coastal and Shelf Science, 198 (Part A). pp. 163-171.

Duke, Norman C., Kovacs, John M., Griffiths, Anthony D., Preece, Luke, Hill, Duncan J. E., Van Oosterzee, Penny, Mackenzie, Jock, Morning, Hailey S., and Burrows, Damien (2017) Large-scale dieback of mangroves in Australia’s Gulf of Carpentaria: a severe ecosystem response, coincidental with an unusually extreme weather event. Marine and Freshwater Research, 68 (10). MF16322. pp. 1816-1829.

Duke, Norman (2017) Love at low tide: why mangroves deserve our admiration. Wildlife Australia, 54 (3). pp. 29-33.

Duke, Norman C. (2017) Mangrove floristics and biogeography revisited: further deductions from biodiversity hot spots, ancestral discontinuities and common evolutionary processes. In: Rivera-Monroy, Victor H., Lee, Shing Yip, Kristensen, Erik, and Twilley, Robert R., (eds.) Mangrove Ecosystems: A Global Biogeographic Perspective - Structure, Function and Services. Springer International Publishing, Cham, Switzerland, pp. 17-53.

Dunn, Ryan J.K., Waltham, Nathan, Teasdale, Peter R., Roberston, David, and Welsh, David T. (2017) Short-term nitrogen and phosphorus release during the disturbance of surface sediments: a case study in an urbanised estuarine system (Gold Coast Broadwater, Australia). Journal of Marine Science and Engineering, 5 (2). pp. 1-13.

Delandmeter, Philippe, Lambrechts, Jonathan, Marmorino, George O., Legat, Vincent, Wolanski, Eric, Remacle, Jean-François, Chen, Wei, and Deleersnijder, Eric (2017) Submesoscale tidal eddies in the wake of coral islands and reefs: satellite data and numerical modelling. Ocean Dynamics, 67 (7). pp. 897-913.

Davis, Aaron M., and Betancur, Ricardo (2017) Widespread ecomorphological convergence in multiple fish families spanning the marine-freshwater interface. Proceedings of the Royal Society of London Series B, Biological Sciences, 284 (1854). 20170565.

Duke, Norman C. (2016) Oil spill impacts on mangroves: recommendations for operational planning and action based on a global review. Marine Pollution Bulletin, 109 (2). pp. 700-715.

Dichmont, Catherine M., Dutra, Leo X.C., Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Deng, Roy A., van Putten, Elizabeth I., Pascual, Ricardo, Dambacher, Jeffrey M., Warne, Michael St.J., Quinn, Ross H., Thébaud, Olivier, Bennett, John, Read, Mark, Wachenfeld, David, Davies, Julia, Garland, Anna, Dunning, Malcolm, Collier, Catherine, Waycott, Michelle, and Playford, Julia (2016) A generic method of engagement to elicit regional coastal management options. Ocean & Coastal Management, 124. pp. 22-32.

Davis, Aaron M., Tink, Michelle, Rohde, Ken, and Brodie, Jon E. (2016) Urea contributions to dissolved 'organic' nitrogen losses from intensive, fertilised agriculture. Agriculture, Ecosystems and Environment, 223. pp. 190-196.

Davis, Aaron M., and Moore, Alex R. (2016) Conservation potential of artificial water bodies for fish communities on a heavily modified agricultural floodplain. Aquatic Conservation: marine and freshwater ecosystems , 26 (6). pp. 1184-1196.

Davis, Aaron M., Unmack, Peterj., Vari, Richard P., and Betancur-R, Ricardo (2016) Herbivory promotes dental disparification and macroevolutionary dynamics in grunters (Teleostei: Terapontidae), a freshwater adaptive radiation. American Naturalist, 187 (3). pp. 320-333.

Dutra, Leo X.C., Dichmont, Catherine M., van Putten, Ingrid E., Thébaud, Oliver, Deng, Roy A., Pascual, Ricardo, Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Warne, M.St.J., Quinn, R., Bennett, J., Read, M., Wachenfeld, D., Collier, Catherine, Waycott, Michelle, Davies, J., Garland, A., Dunning, M., and Playford, J. (2016) How important is the coast? A survey of coastal objectives in an Australian regional city. Marine Policy, 71. pp. 229-241.

Dale, Allan, Vella, Karen, Pressey, Robert L., Brodie, Jon, Gooch, Margaret, Potts, Ruth, and Eberhard, Rachel (2016) Monitoring and adaptively reducing system-wide governance risks facing the GBR: final report. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Davies, Jaclyn, and Rasheed, Michael (2016) Port of Townsville Annual Seagrass Monitoring: September 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davis, Aaron M., and Pradolin, Jordan (2016) Precision herbicide application technologies to decrease herbicide losses in furrow irrigation outflows in a northeastern Australian cropping system. Journal of Agricultural and Food Chemistry, 64 (20). pp. 4021-4028.

Davis, Aaron M., Pearson, Richard G., Brodie, Jon E., and Butler, Barry (2016) Review and conceptual models of agricultural impacts and water quality in waterways of the Great Barrier Reef catchment area. Marine and Freshwater Research, 68 (1). pp. 1-19.

Dale, Allan P., Vella, Karen, Pressey, Robert L., Brodie, Jon, Gooch, Margaret, Potts, Ruth, and Eberhard, Rachel (2016) Risk analysis of the governance system affecting outcomes in the Great Barrier Reef. Journal of Environmental Management, 183 (Part 3). pp. 712-721.

Davies, J.D., Bryant, C.V., Carter, A.B., and Rasheed, M.A. (2016) Seagrasses in Port Curtis and Rodds Bay 2015: annual long-term monitoring. Report. James Cook University, Cairns, QLD, Australia.

Davies, Claire H., Coughlan, Alex, Hallegraeff, Gustaaf, Ajani, Penelope, Armbrecht, Linda, Atkins, Natalia, Bonham, Prudence, Brett, Steve, Brinkman, Richard, Burford, Michele, Clementson, Lesley, Coad, Peter, Coman, Frank, Davies, Diana, Dela-Cruz, Jocelyn, Devlin, Michelle, Edgar, Steven, Eriksen, Ruth, Furnas, Miles, Hassler, Christel, Hill, David, Holmes, Michael, Ingleton, Tim, Jameson, Ian, Leterme, Sophie C., Lønborg, Christian, McLaughlin, James, McEnnulty, Felicity, Mckinnon, A. David, Miller, Margaret, Murray, Shauna, Nayar, Sasi, Patten, Renee, Pritchard, Tim, Proctor, Roger, Purcell-Meyerink, Diane, Raes, Eric, Rissik, David, Ruszczyk, Jason, Slotwinski, Anita, Swadling, Kerrie M., Tattersall, Katherine, Thompson, Peter, Thomson, Paul, Tonks, Mark, Trull, Thomas W., Uribe-Palomino, Julian, Waite, Anya M., Yauwenas, Rouna, Zammit, Anthony, and Richardson, Anthony J. (2016) A database of marine phytoplankton abundance, biomass and species composition in Australian waters. Scientific Data, 3. 160043. pp. 1-12.

Devlin, M.J., Massoud, M.S., Hamid, S.A., Al-Zaidan, A., Al-Sarawi, H., Al-Enezi, M., Al-Ghofran, L., Smith, A.J., Barry, J., Stentiford, G.D., Morris, S., da Silva, E.T., and Lyons, B.P. (2015) Changes in the water quality conditions of Kuwait's marine waters: long term impacts of nutrient enrichment. Marine Pollution Bulletin, 100 (2). pp. 607-620.

Devlin, Michelle J., Petus, Caroline, Da Silva, Eduardo, Tracey, Dieter, Wolff, Nicholas H., Waterhouse, Jane, and Brodie, Jon (2015) Water quality and river plume monitoring in the Great Barrier Reef: an overview of methods based on ocean colour satellite data. Remote Sensing, 7 (10). pp. 12909-12941.

Davies, Jaclyn, Scott, Emma, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Duplication BPAR Monitoring: May - August 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Dafforn, Katherine A., Mayer-Pinto, Mariana, Morris, Rebecca L., and Waltham, Nathan J. (2015) Application of management tools to integrate ecological principles with the design of marine infrastructure. Journal of Environmental Management, 158. pp. 61-73.

Duke, Norman C., Mackenzie, Jock, Wood, Apanie, and Burrows, Damien (2015) New partnership network helps to protect Australian mangroves and saltmarsh. Wetlands Australia, National Wetlands Update (27). pp. 48-50.

Devillers, Rodolphe, Pressey, Robert L., Grech, Alana, Kittinger, John N., Edgar, Graham J., Ward, Trevor, and Watson, Reg (2015) Reinventing residual reserves in the sea: are we favouring ease of establishment over need for protection? Aquatic Conservation: marine and freshwater ecosystems , 25 (4). pp. 480-504.

Davies, Jaclyn, Taylor, Helen, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Dupliaction BPAR Monitoring February/ March - May 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Devlin, Michelle J., Petus, Caroline, Da Silva, Eduardo, Tracey, Dieter, Wolff, Nicholas, Brodie, Jon, Waterhouse, Jane, and Martin, Katherine (2015) Improvements to water quality monitoring through the inclusion of ocean colour products correlated with in-situ water quality gradients for the Great Barrier Reef. In: Posters from the International Ocean Colour Science meeting. From: IOCS 2015: Second International Ocean Colour Science Meeting, 15-18 June 2015, San Fransisco, CA, USA.

Davies, Jaclyn, Scott, Emma, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Duplication BPAR Monitoring: November 2014 - March 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, Tol, Samantha, and Rasheed, Michael (2015) Port of Townsville annual monitoring and baseline survey: October 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Duke, Norman C., and Schmitt, Klaus (2015) Mangroves: unusual forests at the seas edge. In: Pancel, Laslo, and Köhl, Michael, (eds.) Tropical Forestry Handbook. Springer, Berlin, Germany, pp. 1-24.

Dao, Hoc Tan, Smith-Keune, Carolyn, Wolanski, Eric, Jones, Clive M., and Jerry, Dean R. (2015) Oceanographic currents and local ecological knowledge indicate, and genetics does not refute, a contemporary pattern of larval dispersal for the ornate spiny lobster, Panulirus ornatus in the south-east Asian archipelago. PLoS ONE, 10 (5). e0124568. pp. 1-19.

Davis, Aaron M., Pearson, Richard G., Kneipp, Ian J., Benson, Lee J., and Fernandes, Leanne (2015) Spatiotemporal variability and environmental determinants of invertebrate assemblage structure in an Australian dry-tropical river. Freshwater Science, 34 (2). pp. 634-647.

Devlin, Michelle, Fabricius, Katharina, Negri, Andrew, Brodie, Jon, Waterhouse, Jane, Uthicke, Sven, Collier, Catherine, Pressey, Bob, Augé, Amélie, Reid, Ben, Woodberry, Owen, Zhao, Jian-xin, Clarke, Tara, Pandolfi, John, and Bennett, John (2015) Water quality synthesis of NERP tropical ecosystems hub GBR water quality research outputs 2011-2014. Report. Reef and Rainforest Research Centre, Cairns, Australia.

Devlin, Michelle, Le Quesne, Will J.F., and Lyons, Brett P. (2015) The marine environment of Kuwait—emerging issues in a rapidly changing environment. Marine Pollution Bulletin, 100 (2). pp. 593-596.

Delandmeter, Philippe, Lewis, Stephen E., Lambrechts, Jonathan, Deleersnijder, Eric, Legat, Vincent, and Wolanski, Eric (2015) The transport and fate of riverine fine sediment exported to a semi-open system. Estuarine, Coastal and Shelf Science , 167 (Part B). pp. 336-346.

Davis, A.M., Lewis, S.E., Brodie, J.E., and Benson, Ash (2014) The potential benefits of herbicide regulation: a cautionary note for the Great Barrier Reef catchment area. Science of the Total Environment, 490. pp. 81-92.

DeBose, Jennifer L., and Paul, Valerie J. (2014) Chemical signatures of multi-species foraging aggregations are attractive to fish. Marine Ecology Progress Series, 498. pp. 243-248.

Davies, J.N., McKenna, S.A., Jarvis, J.C., Carter, A.B., and Rasheed, M.A. (2014) Port of Townsville annual monitoring and baseline survey: October 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Dichmont, Catherine M., Dutra, Leo X.C., van Putten, Ingrid, Deng, Roy, Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Pascual, Richardo, Warne, Michael, Quinn, Ross, Thébaud, Olivier, Bennett, John, Read, Mark, Wachenfeld, David, Davies, Julia, Garland, Anna, Dunning, Malcolm, Waycott, Michelle, Collier, Catherine, Dambacher, Jeffrey M., Playford, Julia, Harm, Rachel, Gribble, Neil, and Pitcher, Roland (2014) Design and implementation of management strategy evaluation for the Great Barrier Reef inshore (MSE-GBR). Report. Reef and Rainforest Research Centre, Cairns, Australia.

Davis, Aaron M., Unmack, Peter J., Pusey, Bradley J., Pearson, Richard G., and Morgan, David L. (2014) Evidence for a multi-peak adaptive landscape in the evolution of trophic morphology in terapontid fishes. Biological Journal of the Linnean Society, 113 (2). pp. 623-634.

Dunn, Ryan J.K., Waltham, Nathan J., Benfer, Nathan P., King, Brian A., Lemckert, Charles J., and Zigic, Sasha (2014) Gold Coast Broadwater: southern Moreton Bay, Southeast Queensland (Australia). In: Wolanski, Eric, (ed.) Estuaries of Australia in 2050 and Beyond. Estuaries of the World . Springer, Dordrecht, The Netherlands, pp. 93-110.

Duke, Norman (2014) Mangrove coast. In: Harff, Jan, Meschede, Martin, Petersen, Sven, and Thiede, Jörn, (eds.) Encyclopedia of Marine Geosciences. Encyclopedia of Earth Sciences Series . Springer, The Netherlands, pp. 412-422.

Davis, Aaron M., Lewis, Stephen E., O'Brien, Dominique S., Bainbridge, Zoë T., Bentley, Christie, Mueller, Jochen F., and Brodie, Jon E. (2014) Water resource development and high value coastal wetlands on the lower Burdekin floodplain, Australia. In: Wolanski, Eric, (ed.) Estuaries of Australia in 2050 and Beyond. Estuaries of the World . Springer, Dordrecht, The Netherlands, pp. 223-246.

Duke, Norman, Nagelkerken, Ivan, Agardy, Tundi, Wells, Sue, and Van Lavieren, Hanneke (2014) The importance of mangroves to people: a call to action. Report. United Nations Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK.

Davis, A.M., Thorburn, P.J., Lewis, S.E., Bainbridge, Z.T., Attard, S.J., Milla, R., and Brodie, J.E. (2013) Environmental impacts of irrigated sugarcane production: Herbicide run-off dynamics from farms and associated drainage systems. Agriculture, Ecosystems and Environment, 180. pp. 123-135.

Devlin, Michelle J., da Silva, Eduardo Teixeira, Petus, Caroline, Wenger, Amelia, Zeh, Daniel, Tracey, Dieter, Álvarez-Romero, Jorge G., and Brodie, Jon (2013) Combining in-situ water quality and remotely sensed data across spatial and temporal scales to measure variability in wet season chlorophyll-a: Great Barrier Reef lagoon (Queensland, Australia). Ecological Processes, 2. 31. pp. 1-22.

Davies, Jaclyn, McCormack, Catherine, McKenna, Skye, Taylor, Helen, and Rasheed, Michael (2013) Productive capacities of tropical seagrasses communities at three locations along the East Coast of Queensland and their potential for carbon sequestration. In: 50th Australian Marine Sciences Association annual conference: shaping the future: abstracts. p. 108. From: AMSA 2013 Shaping the Future: 50th Annual Conference of the Australian Marine Sciences Association, 1-7 July 2013, Gold Coast, Queensland.

Davies, J.D., McCormack, C.V., and Rasheed, M.A. (2013) Port Curtis and Rodds Bay Seagrass Monitoring Program. Biannual western basin & annual long term monitoring November 2012. Report. TropWATER, James Cook University, Cairns.

DeBose, J.L., Nuttall, M.F., Hickerson, E.L., and Schmahl, G.P. (2013) A high-latitude coral community with an uncertain future: Stetson Bank, northwestern Gulf of Mexico. Coral Reefs, 32 (1). pp. 225-267.

Davis, Aaron M., Unmack, Peter. J., Pusey, Bradley J., Pearson, Richard G., and Morgan, David L. (2013) Ontogenetic development of intestinal length and relationships to diet in an Australasian fish family (Terapontidae). BMC Evolutionary Biology, 13. 53. pp. 1-16.

Donaldson, James A., Ebner, Brendan C., and Fulton, Christopher J. (2013) Flow velocity underpins microhabitat selection by gobies of the Australian Wet Tropics. Freshwater Biology, 58 (5). pp. 1038-1051.

Devlin, Michelle, Petus, Caroline, da Silva, Eduardo Teixera, Alvarez-Romero, Jorge, Zeh, Daniel, Waterhouse, Jane, and Brodie, Jon (2013) Mapping of exposure to flood plumes, water types and exposure to pollutants (DIN, TSS) in the Great Barrier Reef: toward the production of operational risk maps for the world's most iconic marine ecosystem. Report Section. James Cook University, Townsville, QLD.

Dale, Allan, Vella, Karen, Pressey, Robert L., Brodie, Jon, Yorkston, Hugh, and Potts, Ruth (2013) A method for risk analysis across governance systems: a Great Barrier Reef case study. Environmental Research Letters, 8 (1). 015037. pp. 1-16.

Duke, Norm (2012) Mangroves of South-East Australia. In: Sainty, Geoff, Hosking, John, Carr, Geoff, and Adam, Paul, (eds.) Estuary plants and what's happening to them in south-east Australia. Sainty and Associates, Potts Point, Sydney, pp. 132-139.

Davis, A.M., Unmack, P.J., Pusey, B.J., Johnson, J.B., and Pearson, R.G. (2012) Marine-freshwater transitions are associated with the evolution of dietary diversification in terapontid grunters (Teleostei: Terapontidae). Journal of Evolutionary Biology, 25 (6). pp. 1163-1179.

Davis, Aaron M., Pusey, Bradley J., and Pearson, Richard G. (2012) Contrasting intraspecific dietary shifts in two terapontid assemblages from Australia's wet-dry tropics. Ecology of Freshwater Fish, 21 (1). pp. 42-56.

Davis, Aaron M., Lewis, Stephen E., Bainbridge, Zoë T., Glendenning, Lionel, Turner, Ryan D.R., and Brodie, Jon E. (2012) Dynamics of herbicide transport and partitioning under event flow conditions in the lower Burdekin region, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 182-193.

Devlin, Michelle, Wenger, Amelia, Da Silva, Eduardo, Alvarez Romero, Jorge G., Waterhouse, Jane, and McKenzie, Len (2012) Extreme weather conditions in the Great Barrier Reef: drivers of change? In: Proceedings of the 12th International Coral Reef Symposium. 21A_1. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Davis, Aaron M., Blanchette, Melanie L., Pusey, Bradley J., Jardine, Tim D., and Pearson, Richard G. (2012) Gut content and stable isotope analyses provide complementary understanding of ontogenetic dietary shifts and trophic relationships among fishes in a tropical river. Freshwater Biology, 57 (10). pp. 2156-2172.

Doshi, Amar, Pascoe, Sean, Thébaud, Olivier, Thomas, Colette R., Setiasih, Naneng, Hong, James Tan Chun, True, James, Schuttenberg, Heidi Z., and Heron, Scott F. (2012) Loss of economic value from coral bleaching in S.E. Asia. In: Proceedings of the 12th International Coral Reef Symposium. 22D_1. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Devlin, M.J., McKinna, L.W., Alvarez-Romero, J.G., Petus, C., Abott, B., Harkness, P., and Brodie, J. (2012) Mapping the pollutants in surface riverine flood plume waters in the Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 224-235.

Devlin, Michelle, Wenger, Amelia, Waterhouse, Jane, Alvarez-Romero, Jorge, Abbott, Brett, and da Silva, Eduardo Teixeira (2012) Reef Rescue Marine Monitoring Program: flood plume monitoring annual report 2010-11: incorporating results from the Extreme Weather Response Program flood plume monitoring. Report. James Cook University, Townsville, QLD, Australia.

Devlin, Michelle, Wenger, Amelia, Petus, Caroline, da Silva, Eduardo Teixeira, Debose, Jennifer, and Álvarez-Romero, Jorge (2012) Reef Rescue Monitoring Program: final report of JCU activities 2011/12: flood plumes and extreme weather monitoring for the Great Barrier Reef Marine Park Authority. Report. James Cook University, Townsville, QLD, Australia.

Davis, Aaron M., Pusey, Bradley, and Pearson, Richard G. (2012) Trophic ecology of terapontid fishes (Pisces: Terapontidae): the role of morphology and ontogeny. Marine and Freshwater Research, 63 (2). pp. 128-141.

Devlin, Michelle, and Lewis, Stephen (2011) Advancing Our Understanding of the Source, Transport and Impacts of Pesticides on the Great Barrier Reef and in Associated Ecosystems: a review of MTSRF research outputs, 2006-2010. Report. Reef and Rainforest Research Centre, Cairns, QLD.

Devlin, Michelle, Bricker, Suzanne, and Painting, Suzanne (2011) Comparison of five methods for assessing impacts of nutrient enrichment using estuarine case studies. Biogeochemistry, 106 (2). pp. 177-205.

Devlin, Michelle (2011) Flooding in NE Australia: how ongoing monitoring of flood plumes helps in managing the Great Barrier Reef. Marine Ecosystems and Management, 4 (4). p. 7.

Davis, A.M., Pearson, R.G., Pusey, B.J., Perna, C., Morgan, D.L., and Burrows, D. (2011) Trophic ecology of northern Australia's terapontids: ontogenetic dietary shifts and feeding classification. Journal of Fish Biology, 78 (1). pp. 265-286.

Dowe, John L., and Jones, David L. (2011) Arecaceae. In: Wilson, Annette, (ed.) Flora of Australia. Flora of Australia Series, 39 . Australian Biological Resources Study/CSIRO, Melbourne, VIC, Australia, pp. 145-210.

Douglas, Michael, Jackson, Sue, Setterfield, Samantha, Pusey, Brad, Davies, Peter, Kennard, Mark, Burrows, Damien, and Bunn, Stuart (2011) Northern futures: threats and opportunities for freshwater ecosystems. In: Pusey, B.J., (ed.) Aquatic Biodiversity in Northern Australia: Patterns, Threats and Future. CDU Press, Darwin, NT, pp. 203-220.

Davis, A.M., and Pusey, B.J. (2010) Trophic polymorphism and water clarity in northern Australian Scortum (Pisces: Terapontidae). Ecology of Freshwater Fish, 19 (4). pp. 638-643.

Doupe, R.G., and Knott, M.J. (2010) Rapid digestion of fish prey by the highly invasive ‘detritivore’ Oreochromis mossambicus. Journal of Fish Biology, 76 (4). pp. 1019-1024.

Davis, A.M., Pusey, B.J., Thorburn, D.C ., Dowe, J.L., Morgan, D.L., and Burrows, D. (2010) Riparian contributions to the diet of terapontid grunters (Pisces: Terapontidae) in wet–dry tropical rivers. Journal of Fish Biology, 76 (4). pp. 862-879.

Doupe, Robert G., Mitchell, Jim, Knott, Matthew J., Davis, Aaron M., and Lymbery, Alan J. (2010) Efficacy of exclusion fencing to protect ephemeral floodplain lagoon habitats from feral pigs (Sus scrofa). Wetlands Ecology and Management, 18 (1). pp. 69-78.

Doupe, Robert G., Knott, Matthew J., Schaffer, Jason, Burrows, Damien W., and Lymbery, Alan J. (2010) Experimental herbivory of native Australian macrophytes by the introduced Mozambique tilapia Oreochromis mossambicus. Austral Ecology, 35 (1). pp. 24-30.

Dowe, John (2010) Australian Palms: Biogeography, Ecology and Systematics. CSIRO Publishing, Collingwood, Victoria, Australia.

Devlin, Michelle, Barry, Jon, Painting, Suzanne, and Best, Mike (2009) Extending the phytoplankton tool kit for the UK Water Framework Directive: indicators of phytoplankton community structure. Hydrobiologia, 633 (1). pp. 151-168.

Doupé, Robert G., Schaffer, Jason, Knott, Matthew J., and Burrows, Damien W. (2009) How might an exotic fish disrupt spawning success in a sympatric native species? Marine and Freshwater Research, 60 (5). pp. 379-383.

Devlin, M.J., Barry, J., Mills, D.K., Gowen, R.J., Foden, J., Sivyer, D., Greenwood, N., Pearce, D., and Tett, P. (2009) Estimating the diffuse attenuation coefficient from optically active constituents in UK marine waters. Estuarine, Coastal and Shelf Science , 82 (1). pp. 73-83.

Dowe, John Leslie (2009) A preliminary note on the impact of Cyclone Larry on populations of Archontophoenix alexandrae (Arecaceae), north Queensland, Australia. Palms & Cycads, 102. pp. 4-8.

Dowe, John Leslie (2009) Archontophoenix (Arecaceae) description of species and notes. The Palm Journal, 192. pp. 4-11.

Davis, Aaron M., and Perna, Colton (2009) Evidence for predation on terrestrial Cane Toads Bufo marinus by the Sooty Grunter Hephaestus fuliginosus in northern Australia. Northern Territory Naturalist, 21. pp. 45-48.

Doupé, R.G., Knott, M.J., Schaffer, J., and Burrows, D.W. (2009) Investigational piscivory of some juvenile Australian freshwater fishes by the introduced Mozambique tilapia Oreochromis mossambicus. Journal of Fish Biology, 74 (10). pp. 2386-2400.

Devlin, Michelle, and Schaffelke, Britta (2009) Spatial extent of riverine flood plumes and exposure of marine ecosystems in the Tully coastal region, Great Barrier Reef. Marine and Freshwater Research, 60 (11). pp. 1109-1122.

Doupe, Robert G., Schaffer, Jason, Knott, Matthew J., and Dicky, Paul W. (2009) A description of freshwater turtle habitat destruction by feral pigs in tropical north eastern Australia. Herpetological Conservation and Biology, 4 (3). pp. 331-339.

Dowe, J.L. (2009) A taxonomic account of Livistona R.Br. (Arecaceae). Garden's Bulletin Singapore, 60 (2). pp. 185-344.

Doupè, Robert G., Schaffer, Jason, and Knott, Matthew J. (2008) An Example of Freshwater Turtle Habitat Destruction by Foraging Feral Pigs in Tropical North-Eastern Australia. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Devlin, M.J., Barry, J., Mills, D.K., Gowen, R.J., Foden, J., Sivyer, D., and Tett, P. (2008) Relationships between suspended particulate material, light attenuation and Secchi depth in UK marine waters. Estuarine, Coastal and Shelf Science , 79 (3). pp. 429-439.

Dowe, John Leslie (2008) Botanical Inventory of the Mungalla Coastal Habitats. Report. James Cook University, Townsville, QLD, Australia.

Davis, Aaron, Lewis, Stephen, Bainbridge, Zoe, Brodie, Jon, and Shannon , Evan (2008) Pesticide residues in waterways of the lower Burdekin region: challenges in ecotoxicological interpretation of monitoring data. Australasian Journal of Ecotoxicology, 14. pp. 89-108.

Dowe, John Leslie, and Broughton, Alan D. (2008) F.M. Bailey's taxonomy of A. Meston's collections from the Bellenden Ker Expedition of 1904. Austrobaileya, 7. pp. 675-677.

Duke, N.C., and Larkum, A.W.D. (2008) Mangroves and seagrasses. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: Biology, Environment and Management. CSIRO Publishing, Collingwood, VIC, pp. 156-170.

Doupe, Robert G., and Burrows, Damien W. (2008) Thirty years later, should we be more concerned for the ongoing invasion of Mozambique Tilapia in Australia? Pacific Conservation Biology, 14 (4). pp. 235-238.

Dowe, John Leslie, and Broughton, Alan D. (2007) F.M. Bailey's ascent of Mt Bellenden-Ker in 1889, and notes on the publication priority of new vascular plant species from the expedition. Austrobaileya, 7 (3). pp. 555-566.

Davis, Aaron (2007) Overview of research and environmental issues relevant to development of recommended farming practices for sugar cane farming in the Lower Burdekin region. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Dowe, John Leslie (2007) Ptychosperma macarthurii: discovery, horticulture and taxonomy. Palms, 51 (2). pp. 85-96.

Dixon, Ian, Douglas, Michael, Dowe, John, and Burrows, Damien (2006) Tropical rapid appraisal of riparian condition Version 1 (for use in tropical savannas). Report. Land and Water Australia, Canberra, Australia.

Duke, Norman (2006) Australia's Mangroves: an authoritative guide to Australia’s mangrove plants. University of Queensland and Norman C. Duke, Brisbane, QLD, Australia.

Dowe, John Leslie, and Chapin, Melany H. (2006) Beccari's "Grande Nouveauté": the discovery, taxonomic history and typification of Pelagodoxa henryana. Palms, 50 (4). pp. 185-192.

Dowe, John Leslie (2005) Observations of palms made by the botanist and explorer Ludwig Leichhardt, during the Australian Overland Expedition of 1844-1845. Palms, 49 (4). pp. 167-182.

Dixon, Ian, Douglas, Michael, Dowe, John, Burrows, Damien, and Townsend, Simon (2005) A rapid method for assessing the condition of riparian zones in the wet/dry tropics of northern Australia. In: Proceedings of the 4th Australian Stream Management Conference. pp. 173-178. From: The 4th Australian Stream Management Conference, 19-22 October 2004, Launceston, TAS, Australia.

Dowe, John Leslie (2005) Ludwig Leichhardt's Australian plant collections, 1842-1847. Austrobaileya, 7 (1). pp. 151-163.

Devlin, M.J., and Brodie, J. (2005) Terrestrial discharge into the Great Barrier Reef Lagoon: nutrient behavior in coastal waters. Marine Pollution Bulletin, 51 (1). pp. 9-22.

Dowe, John L., and Mogea, Johanis P. (2004) New species of Livistona (Arecaceae) from New Guinea. Palms, 48 (4). pp. 197-203.

Dowe, John Leslie (2004) Taxonomic notes on palms (Arecaceae) in catalogues of the Brisbane Botanic Garden, Australia, of 1875 and 1885. Austrobaileya, 6 (4). pp. 967-972.

Devlin, Michelle, Brodie, Jon, Waterhouse, Jane, Mitchell, Alan , Audas, Donna, and Haynes, David (2003) Exposure of Great Barrier Reef inner-shelf reefs to river-borne contaminants. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.

Doupé, R.G., and Pettit, N.E. (2002) Ecological perspectives on regulation and water allocation for the Ord River, Western Australia. River Research and Applications: an international journal devoted to river research and management, 18 (3). pp. 307-320.

Dowe, John L., and Barfod, Anders S. (2001) New species of Livistona R. Br. (Arecaceae) from north Queensland and Papua New Guinea. Austrobaileya, 6 (1). pp. 165-174.

Devlin, Michelle, Waterhouse, Jane, Taylor, Jeremy, and Brodie, Jon (2001) Flood plumes in the Great Barrier Reef : spatial and temporal patterns in composition and distribution. Report. Great Barrier Reef Marine Park Authority, Townsville, Australia.

Duke, Norman (2001) Mangrove phenologies and the factors influencing them in the Australasian region. In: De Lacerda, Luiz-Drude, (ed.) Mangrove Ecosystems: Function and Management. Environmental Science . Springer-Verlag, Berlin, Germany, pp. 217-233.

Duke, Norman, and Wolanski, Eric (2001) Muddy coastal waters and depleted mangrove coastlines - depleted seagrass and coral reefs. In: Wolanski, Eric, (ed.) Oceanographic Processes of Coral Reefs: physical and biology links in the Great Barrier Reef. CRC Press, Washington, DC, USA, pp. 77-91.

Dixon, Dale (2000) Flora and fauna survey of the vegetation and faunal habitats adjacent to the Mackay-Bucasia Road. Report. James Cook University, Townsville, QLD, Australia.

Duke, Norman (1997) Mangroves in the Great Barrier Reef World Heritage Area: current status, long-term trends, management implications and research. In: Wachenfeld, David, Oliver, Jamie, and Davis, Kim, (eds.) State of the Great Barrier Reef World Heritage Area Workshop. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia, pp. 288-299.

Duke, Norman (1996) Mangrove reforestation in Panama: an evaluation of planting in areas deforested by a large oil spill. In: Field, Colin D., (ed.) Restoration of mangrove ecosystems. International Society for Mangrove Ecosystems ISME & International Tropical Timber Organization ITTO, Okinawa, Japan, pp. 209-232.

Duke, N.C. (1990) Phenological trends with latitude in the mangrove tree Avicennia marina. Journal of Ecology, 78 (1). pp. 113-133.

Duke, N.C., and Bunt, J.S. (1979) The genus Rhizophora (Rhizophoraceae) in north-eastern Australia. Australian Journal of Botany, 27 (5). pp. 657-678.

Devlin, Michelle (2005) Spatial and temporal patterns of flood plumes in the Great Barrier Reef, Australia. PhD thesis, James Cook University.

E

Ebner, Brendan C., Maeda, Ken, Donaldson, James A., Harasti, David, Lord, Clara, Hay, Vincent, Heffernan, Jason, Starrs, Danswell, Thuesen, Paul, Beatty, Stephen, Boseto, David, Copeland, Lekima K.F., Rashni, Bindiya, Hevalao, Robson S., and Keith, Philippe (2023) Pebbled places preferred by people and pipefish in a World Heritage protected area. Cybium, 47 (4). pp. 401-416.

Ebner, Brendan C., and Rentz, David (2022) Cool Runnings: Antennae facilitate collective motion by a grounded group of adult antlions. Ecology, 103 (7). e3682.

Earp, Hannah, Vye, Siobhan, Bohn, Katrin, Burrows, Michael, Chenery, Jade, Dickens, Stephanie, Foster, Charlotte, Grist, Hannah, Lamont, Peter, Long, Sarah, Morrall, Zoe, Pocklington, Jacqueline, Scott, Abigail, Watson, Gordon, West, Victoria, Jenkins, Stuart, Delany, Jane, and Sugden, Heather (2022) Do you see what i see? Quantifying inter-observer variability in an intertidal marine citizen science experiment. Citizen Science: Theory and Practice, 7 (1). 12.

Espinoza-Rodriguez, Ninive, and Barrios-Garrido, Hector (2022) Fibropapillomatosis in immature Green Turtles (Chelonia mydas) from the Gulf of Venezuela / Fibropapilomatosis en juveniles de Tortuga Verde (Chelonia mydas) del Golfo de Venezuela. Revista Cientifica, 32. e32086.

Ebner, Brendan C., Donaldson, James A., Marshall, Jonathan, Starrs, Danswell, and Freeman, Alastair B. (2021) Diving beetles strip eel to the bone. Food Webs, 27. e00188.

Espinoza-rodriguez, Ninive, Pernia, Yumara, Severeyn, Hector, Garcia de Severeyn, Yajaira, and Barrios-Garrido, Hector (2021) Echinoderms from the Gulf of Venezuela, north-western coast of Venezuela. Papéis Avulsos de Zoologia, 61. e20216151.

Espinoza-rodriguez, Ninive, and Barrios-Garrido, Hector (2021) First report of a Humpback Whale Megaptera novaeangliae (Borowski, 1781) (Cetartiodactyla: Balaenopteridae) stranding in the Gulf of Venezuela. Ecotropicos, 33. pp. 1-7.

Elisa, Manase, Kihwele, Emilian, Wolanski, Eric, and Birkett, Charon (2021) Managing wetlands to solve the water crisis in the Katuma River ecosystem, Tanzania. Ecohydrology and Hydrobiology, 21 (2). pp. 211-222.

Ebner, Brendan C., Donaldson, James A., Murphy, Helen, Thuesen, Paul, Ford, Andrew, Schaffer, Jason, and Keith, Philippe (2021) Waterfalls mediate the longitudinal distribution of diadromous predatory fishes structuring communities in tropical, short, steep coastal streams. Freshwater Biology, 66 (6). pp. 1225-1241.

Ebner, Brendan C. (2021) Yellowfin bream, Acanthopagrus australis, reorientate individual shells in search of prey. Food Webs, 29. e00216.

Edmunds, Richard C., and Burrows, Damien (2020) Got glycogen?: Development and multispecies validation of the novel preserve, precipitate, lyse, precipitate, purify (pplpp) workflow for environmental dna extraction from Longmire's preserved water samples. Journal of Biomolecular Techniques, 31 (4). pp. 125-150.

Ebner, B.C., Millington, M., Holmes, B.J., Wilson, D.T., Sydes, T., Bickel, T.O., Power, T., Hammer, M., Lach, L., Schaffer, J., Lymbery,, A., and Morgan, D. (2020) Scoping the biosecurity risks and appropriate management relating to the freshwater ornamental aquarium trade across northern Australia. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Ebner, Brendan C., and Kemp, Darrell J. (2020) The boy can dance: ritual courtship of the opal cling goby. Pacific Conservation Biology, 26. pp. 201-203.

Ebner, Brendan C., Donaldson, James A., Courtney, Robert, Fitzpatrick, Richard, Starrs, Danswell, Fletcher, Cameron S., and Seymour, Jamie (2019) Averting danger under the bridge: video confirms that adult small-toothed morays tolerate salinity before and during tidal influx. Pacific Conservation Biology, 26 (2). pp. 182-189.

Ebner, Brendan C., Donaldson, James A., and Starrs, Danswell (2019) Barred grunters shift objects to access benthic invertebrates in a crater lake. Food Webs, 20. e00119.

Espinoza-rodriguez, Ninive, De Turris-Morales, Kareen, and Barrios-Garrido, Hector (2019) Descripción craneométrica de cinco individuos del delfín nariz de botella Tursiops truncatus Montagu, 1821 (Cetartiodactyla: Delphinidae) presentes en las costas del Golfo de Venezuela / Craniometrical descriptions of five specimens for the Bottlenose dolphin Tursiops truncatus Montagu, 1821 (Cetartiodactyla: Delphinidae) from the Gulf of Venezuela coasts. Ecotrópicos, 31. E007.

Ebner, Brendan C., Donaldson, James A., and Starrs, Danswell (2019) Juvenile silver grunter Mesopristes argenteus shift benthic objects to access food. Journal of Fish Biology, 95 (3). pp. 974-978.

Elliott, Michael, Day, John W., Ramachandran, Ramesh, and Wolanski, Eric (2019) A synthesis: what is the future for coasts, estuaries, deltas and other transitional habitats in 2050 and beyond? In: Wolanski, Eric, Day, John W., Elliott, Michael, and Ramachandran, Ramesh, (eds.) Coasts and Estuaries: the future. Elsevier, Oxford, United Kingdom, pp. 1-28.

Ebner, Brendan C., Donaldson, James A., and Starrs, Danswell (2018) Coal grunters shift benthic objects to access macroinvertebrates in a headwater stream. Pacific Conservation Biology, 24 (4). pp. 417-418.

Eberhard, Rachel, Thorburn, Peter, Rolfe, John, Taylor, Bruce, Ronan, Mike, Webber, Tony, Flint, Nicole, Kroon, Frederieke, Silburn, Mark, Bartley, Rebecca, Davis, Aaron, Wilkinson, Scott, Lewis, Stephen, Star, Megan, Poggio, Mark, Windle, Jill, Marshall, Nadine, Hill, Rosemary, Maclean, Kirsten, Lyons, Pethie, Robinson, Cathy, Adame, Fernanda, Selles, Amelia, Griffiths, Matthew, Gunn, John, and McCosker, Kevin (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition. Chapter 4: management options and their effectiveness. Report Section. State of Queensland.

Ebner, Brendan C. (2017) Growth, maximum daily ration and intraspecific cohabitation of the moray Gymnothorax polyuranodon (Muraenidae)in a freshwater aquarium. Cybium, 41 (2). pp. 93-99.

Ebner, Brendan C., Donaldson, James, Allen, Gerald E., and Keith, Philippe (2017) Visual census, photographic records and the trial of a video network provide first evidence of the elusive Sicyopterus cynocephalus in Australia. Cybium, 41 (2). pp. 117-125.

Ebner, Brendan C., Morgan, David L., Kerezsy, Adam, Hardie, Scott, Beatty, Stephen J., Seymour, Jamie E., Donaldson, James A., Linke, Simon, Peverell, Stirling, Roberts, David, Espinoza, Thomas, Marshall, Nadine, Kroon, Frederieke J., Burrows, Damien W., and McAllister, Ryan R.J. (2016) Enhancing conservation of Australian freshwater ecosystems: identification of freshwater flagship fishes and relevant target audiences. Fish and Fisheries, 17 (4). pp. 1134-1151.

Elliott, Michael, Mander, Lucas, Mazik, Krysia, Simenstad, Charles, Valesini, Fiona, Whitfield, Alan, and Wolanski, Eric (2016) Ecoengineering with ecohydrology: successes and failures in estuarine restoration. Estuarine, Coastal and Shelf Science , 176. pp. 12-35.

Ebner, Brendan C., Fulton, Christopher J., Donaldson, James A., and Schaffer, Jason (2016) Distinct habitat selection by freshwater morays in tropical rainforest streams. Ecology of Freshwater Fish, 25 (2). pp. 329-335.

Epstein, Hannah E., Templeman, Michelle A., and Kingsford, Michael J. (2016) Fine-scale detection of pollutants by a benthic marine jellyfish. Marine Pollution Bulletin, 107 (1). pp. 340-346.

Elliott, Michael, and Wolanski, Eric (2015) Editorial - Climate change impacts on rural poverty in low-elevation coastal zones, Edward B. Barbier. Estuarine, Coastal and Shelf Science , 165. ii-iii.

Ebner, Brendan C., Fulton, Christopher J., Cousins, Stephen, Donaldson, James A., Kennard, Mark J., Meynecke, Jan-Olaf, and Schaffer, Jason (2015) Filming and snorkelling as visual techniques to survey fauna in difficult to access tropical rainforest streams. Marine and Freshwater Research, 66 (2). pp. 120-126.

Ebner, Brendan C., Starrs, Danswell, Morgan, David L., Fulton, Christopher J., Donaldson, James A., Doody, J. Sean, Cousins, Stephen, Kennard, Mark, Butler, Gavin, Tonkin, Zeb, Beatty, Stephen, Broadhurst, Ben, Clear, Rhian, Lintermans, Mark, and Fletcher, Cameron S. (2014) Emergence of field-based underwater video for understanding the ecology of freshwater fishes and crustaceans in Australia. Journal of the Royal Society of Western Australia, 97. pp. 287-296.

Edelman, Alexandra, Gelding, Andrea, Konovalov, Elena, McComiskie, Rodney, Penny, Anne, Roberts, Nicholas, Templeman, Shelley, Trewin, Dennis, Ziembicki, Mark, Trewin, Blair, Cortlet, Richard, Hemingway, Janet, Isaac, Joanne, and Turton, Steve (2014) State of the Tropics 2014 report. Report. James Cook University, Cairns.

Ebner, B.C., and Morgan, D.L. (2013) Using remote underwater video to estimate freshwater fish species richness. Journal of Fish Biology, 82 (5). pp. 1592-1612.

Ebner, B.C., Kroll, B., Godfrey, P., Thuesen, P.A., Vallance, T., Pusey, B., Allen, G.R., Rayner, T.S., and Perna, C.N. (2011) Is the elusive Gymnothorax polyuranodon really a freshwater moray? Journal of Fish Biology, 79 (1). pp. 70-79.

Edmunds, Richard C., van Herwerden, Lynne, Smith-Keune, Carolyn, and Jerry, Dean R. (2009) Comparative characterization of a temperature responsive gene (lactatedehydrogenase-B, ldh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus. International Journal of Biological Sciences, 5 (6). pp. 558-569.

F

Frappi, Sofia, Williams, Collin, Pilcher, Nicolas, Rodrigue, Mattie, Marshall, Paul, Pieribone, Vincent, Qurban, Mohammed, and Duarte, Carlos M. (2023) New depth records and novel feeding observations of three elasmobranchs species in the Eastern Red Sea. Frontiers in Marine Science, 10. 1270257.

Fronkova, Lenka, Greenwood, Naomi, Martinez, Roi, Graham, Jennifer A., Harrod, Richard, Graves, Carolyn A., Devlin, Michelle J., and Petus, Caroline (2022) Can Forel–Ule Index Act as a Proxy of Water Quality in Temperate Waters? Application of Plume Mapping in Liverpool Bay, UK. Remote Sensing, 14. 2375.

Fielke, Simon, Taylor, Bruce M., Coggan, Anthea, Jakku, Emma, Davis, Aaron M., Thorburn, Peter J., Webster, Anthony J., and Smart, James C.R. (2022) Understanding power, social capital and trust alongside near real-time water quality monitoring and technological development collaboration. Journal of Rural Studies, 92. pp. 120-131.

Fillols, E.F., and Davis, A. (2021) Effect of the soil-binding adjuvant Grounded® on herbicide efficacy and runoff losses in bare soil in ratoons. In: Proceedings of the Australian Society of Sugar Cane Technologists (42) pp. 555-562. From: 42nd Australian Society of Sugar Cane Technologists Conference, 20-23 April 2021, Bundaberg, QLD, Australia.

Fielke, Simon J., Taylor, Bruce M., Jakku, Emma, Mooij, Martijn, Stitzlein, Cara, Fleming, Aysha, Thorburn, Peter J., Webster, Anthony J., Davis, Aaron, and Vilas, Maria P. (2021) Grasping at digitalisation: turning imagination into fact in the sugarcane farming community. Sustainability Science, 16. pp. 677-690.

Friess, Daniel, Dahdouh-Guebas, Farid, Satyanarayana, Behara, Cannicci, Stefano, Chua, Siew Chin, Duke, Norman, Feller, Ilka, Jaafer, Zeehan, Jayatissa, L.P., Koedam, Nico, Krauss, Ken, Lee, Shing Yip, Pineda, Jose Ernesto Mancera, Ruwa, Renison, Vannini, Marco, and Yando, Erik S. (2021) Scientific contributions of the Mangrove Macrobenthos and Management (MMM) conference series, 2000–2019. Estuarine, Coastal and Shelf Science, 248. 106742.

Fillois, E.F., and Davis, A.M. (2021) Soil-binding adjuvants can reduce herbicide loss via runoff. In: Proceedings of the Australian Society of Sugar Cane Technologists. pp. 433-443. From: ASSCT 2020: 42nd Annual Conference of the Australian Society of Sugar Cane Technologists, 20-23 April 2021, Bundaberg, QLD, Australia.

Ferse, Sebastian C.A., Hein, Margaux Y., and Rölfer, Lena (2021) A survey of current trends and suggested future directions in coral transplantation for reef restoration. PLoS ONE, 16 (5). e0249966.

Fillols, Emilie, Davis, Aaron M., Lewis, Stephen E., and Ward, Andrew (2020) Combining weed efficacy, economics and environmental considerations for improved herbicide management in the Great Barrier Reef catchment area. Science of the Total Environment, 720. 137481.

Fitzsimons, James A., Branigan, Simon, Gillies, Chris L., Brumgaugh, Robert D., Cheng, Jun, DeAngelis, Bryan M., Geselbracht, Laura, Hancock, Boze, Jeffs, Andrew, McDonald, Tein, McLeod, Ian M., Pogoda, Bernadette, Theuerkauf, Seth J., Thomas, Marine, Westby, Stephanie, and zu Ermgassen, Philine S.E. (2020) Restoring shellfish reefs: global guidelines for practitioners and scientists. Conservation Science and Practice, 2 (6). e198.

Folan, Anthony, Fischer, Justin, Waltham, Nathan, and Horton, Peter (2019) Flying fish point rock revetment upgrade: application of 'green engineering', fish friendly features and other innovative measures. In: Proceedings of the Australasian Coasts and Ports 2019 Conference. pp. 411-417. From: Australasian Coasts and Ports 2019 Conference, 10-13 September 2019, Hobart, TAS, Australia.

Fillols, E., Lewis, S., and Davis, A. (2018) Efficacy and environmental runoff impact of alternative pre-emergent herbicides to diuron applied on trash blanketed ratoons. In: Proceedings of the 40th Annual Conference of the Australian Society of Sugar Cane Technologists (40) pp. 281-292. From: ASSCT 2018: 40th Annual Conference of the Australian Society of Sugar Cane Technologists, 17-20 April 2018, Mackay, QLD, Australia.

Flint, N., Pearson, R.G., and Crossland, M.R. (2018) Embryos of eastern rainbowfish Melanotaenia splendida splendida (Peters, 1866) tolerate fluctuating hypoxia. Marine and Freshwater Research, 69 (6). pp. 987-991.

Flint, Nicole, Pearson, Richard G., and Crossland, Michael R. (2018) Reproduction and embryo viability of a range-limited tropical freshwater fish exposed to fluctuating hypoxia. Marine and Freshwater Research, 69 (2). pp. 267-276.

Fraser, Matthew, Short, Jessie, Kendrick, Gary, McLean, Dianne, Keesing, John, Byrne, Maria, Caley, M. Julian, Clarke, Doug, Davis, Andrew R., Erftemeijer, Paul L.A., Field, Stewart, Gustin-Craig, Sam, Huisman, John, Keough, Mick, Lavery, Paul S., Masini, Ray, McMahon, Kathryn, Mengersen, Kerrie, Rasheed, Michael, Statton, John, Stoddart, Jim, and Wu, Paul (2017) Effects of dredging on critical ecological processes for marine invertebrates, seagrasses and macroalgae, and the potential for management with environmental windows using Western Australia as a case study. Ecological Indicators, 78. pp. 229-242.

Farrington, John W., Burns, Kathryn A., and Leinen, Margaret S. (2016) Synthesis and crosscutting topics. Oceanography, 29 (3). pp. 204-213.

Furuichi, Takahisa, Olley, Jon, Wilkinson, Scott, Lewis, Stephen, Bainbridge, Zoe, and Burton, Joanne (2016) Paired geochemical tracing and load monitoring analysis for identifying sediment sources in a large catchment draining into the Great Barrier Reef Lagoon. Geomorphology, 266. pp. 41-52.

Fabricius, K.E., Logan, M., Weeks, S.J., Lewis, S.E., and Brodie, J. (2016) Changes in water clarity in response to river discharges on the Great Barrier Reef continental shelf: 2002-2013. Estuarine, Coastal and Shelf Science, 173. A1-A15.

Flores-de-Santiago, Francisco, Kovacs, John M., Wang, Jinfei, Flores-Verdugo, Francisco, Zhang, Chunhua, and González-Farías, Fernando (2016) Examining the influence of seasonality, condition, and species composition on mangrove leaf pigment contents and laboratory based spectroscopy data. Remote Sensing, 8 (3). 226. pp. 1-20.

Flint, Nicole, Crossland, Michael R., and Pearson, Richard G. (2015) Sublethal effects of fluctuating hypoxia on juvenile tropical Australian freshwater fish. Marine and Freshwater Research, 66 (4). pp. 293-304.

Fabricius, K.E, Logan, M., Weeks, S., and Brodie, J. (2014) The effects of river run-off on water clarity across the central Great Barrier Reef. Marine Pollution Bulletin, 84 (1-2). pp. 191-200.

Farrington, Lachlan W., Lintermans, Mark, and Ebner, Brendan C. (2014) Characterising genetic diversity and effective population size in one reservoir and two riverine populations of the threatened Macquarie perch. Conservation Genetics, 15 (3). pp. 707-716.

Fisher, Diana O., Johnson, Chris N., Lawes, Michael J., Fritz, Susanne A., McCallum, Hamish, Blomberg, Simon P., VanDerWal, Jeremy, Abbott, Brett, Frank, Anke, Legge, Sarah, Letnic, Mike, Thomas, Colette R., Fisher, Alaric, Gordon, Iain J., and Kutt, Alex (2014) The current decline of tropical marsupials in Australia: is history repeating? Global Ecology and Biogeography , 23 (2). pp. 181-190.

Foden, Wendy B., Butchart, Stuart H.M., Stuart, Simon N., Vié, Jean-Christophe, Akçakaya, H. Resit, Angulo, Ariadne, DeVantier, Lyndon M., Gutsche, Alexander, Turak, Emre, Cao, Long, Donner, Simon D., Katariya, Vineet, Bernard, Rodolphe, Holland, Robert A., Hughes, Adrian F., O'Hanlon, Susannah E., Garnett, Stephen T., Şekercioǧlu, Çagan H., and Mace, Georgina M. (2013) Identifying the world's most climate change vulnerable species: a systematic trait-based assessment of all birds, amphibians and corals. PLoS ONE, 8 (6). e65427. pp. 1-13.

Fulton, Christopher J., Starrs, Danswell, Ruibal, Monica P., and Ebner, Brendan C. (2012) Counting crayfish: active searching and baited cameras trump conventional hoop netting in detecting Euastacus armatus. Endangered Species Research, 19 (1). pp. 39-45.

Flint, Nicole, Pearson, Richard G., and Crossland, Michael R. (2012) Use of aquatic plants to create fluctuating hypoxia in an experimental environment. Marine and Freshwater Research, 63 (4). pp. 351-360.

Foden, Jo, Devlin, Michelle J., Mills, David K., and Malcolm, Stephen J. (2011) Searching for undesirable disturbance: an application of the OSPAR eutrophication assessment method to marine waters of England and Wales. Biogeochemistry, 106 (2). pp. 157-175.

Fabricius, Katharina, Brodie, Jon, Waterhouse, Jane, and Yorkston, Hugh (2011) Science-based catchment management is evolving along the Great Barrier Reef of Australia. In: Wilkinson, Clive, and Brodie, Jon, (eds.) Catchment Management and Coral Reef Convservation. Global Coral Reef Monitoring Network and Reef and Rainforest Research Centre, Townsville, QLD, Australia, pp. 102-105.

Foden, J., Sivyer, D.B., Mills, D.K., and Devlin, M.J. (2008) Spatial and temporal distribution of chromophoric dissolved organic matter (CDOM) fluorescence and its contribution to light attenuation in UK waterbodies. Estuarine, Coastal and Shelf Science , 79 (4). pp. 707-717.

Fairfax, R., Fensham, R., Wager, R., Brooks, S., Webb, A., and Unmack, P. (2007) Recovery of the red-finned blue-eye: an endangered fish from springs of the Great Artesian Basin. Wildlife Research, 34 (2). pp. 156-166.

Fensham, R.J., Bean, A.R., Dowe, J. L., and Dunlop, C.R. (2006) This disastrous event staggered me: reconstructing the botany of Ludwig Leichhardt on the expedition from Moreton Bay to Port Essington, 1844-45. Cunninghamia, 9 (4). pp. 451-506.

Frisch, Ashley, and Anderson, Trevor (2005) Physiological stress responses of two species of coral trout (Plectropomus leopardus and Plectropomus maculatus). Comparative Biochemistry and Physiology-Part A: molecular & integrative physiology, 140 (3). pp. 317-327.

Furnas, Miles, Mitchell, Alan, Skuza, Michelle, and Brodie, Jon (2005) In the other 90%: phytoplankton responses to enhanced nutrient availability in the Great Barrier Reef lagoon. Marine Pollution Bulletin, 51 (1). pp. 253-265.

Faithful, John, and Finlayson, Wendy (2005) Water quality assessment for sustainable agriculture in the Wet Tropics: a community-assisted approach. Marine Pollution Bulletin, 51 (1-4). pp. 99-112.

Frisch, Ashley (2004) Sex-change and gonadal steroids in sequentially-hermaphroditic teleost fish. Reviews in Fish Biology and Fisheries, 14 (4). pp. 481-499.

Fabricius, K.E., Wild, C., Wolanski, E., and Abele, D. (2003) Effects of transparent exopolymer particles and muddy terrigenous sediments on the survival of hard coral recruits. Estuarine, Coastal and Shelf Science , 57 (4). pp. 613-621.

Finlayson, C.M., and Lukacs, George P. (2003) Status of wetlands in Northern Australia. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.

Faithful, John W., and Griffiths, Dilwyn J. (2000) Turbid flow through a tropical reservoir (Lake Dalrymple, Queensland, Australia): responses to a summer storm event. Lakes and Reservoirs: research and management, 5 (4). pp. 231-247.

Fulton, Elizabeth, Kault, David, Mapstone, Bruce, and Sheaves, Marcus (1999) Spawning season influences on commercial catch rates: computer simulations and Plectropomus leopardus, a case in point. Canadian Journal of Fisheries and Aquatic Sciences, 56 (6). pp. 1096-1108.

Faithful, John W., and Cairns, Andi (1999) Townsville Ring Road (Douglas section). Review of environmental factors flora, fauna and water quality. Report. James Cook University, Townsville, QLD, Australia.

G

Garrigue, Claire, Derville, Solene, Bonnerville, Claire, Brisset, Maele, Bustamante, Paco, Cleguer, Christophe, Clua, Eric E.G., Dabin, Willy, Fiat, Sylvie, Justine, Jean-Lou, Machful, Pauline, Mai, Tepoerau, Pilchon, Patrice, Portal, Annie, Sidobre, Christine, Steel, Debbie, Vivier, Jean-Christophe, and Vourey, Elodie (2024) Marine mammal strandings recorded in New Caledonia, South West Pacific Ocean, 1877 to 2022. Pacific Conservation Biology, 30 (1). PC23016.

Glanville, K., Perry, J., Ryan, T., Ronan, M., and Zivec, P. (2023) Applying a versatile, comprehensive, attribute-based waterhole classification scheme to ecosystem-based management challenges. Wildlife Research, 50 (12). pp. 1085-1096.

Godinez-Espinosa, Sara, Raoult, Vincent, Smith, Timothy M., Gaston, Troy F., and Williamson, Jane E. (2023) Functional roles of coral reef primary producers examined with stable isotopes. Marine and Freshwater Research, 74 (7). pp. 601-613.

Garrigue, Claire, Bonnerville, Claire Daisy, Cleguer, Christophe, and Oremus, Marc (2022) Extremely Low mtDNA Diversity and High Genetic Differentiation Reveal the Precarious Genetic Status of Dugongs in New Caledonia, South Pacific. Journal of Heredity, 113 (5). pp. 516-524.

Godfrey, Paul C., Pusey, Bradley J., Pearson, Richard G., and Arthington, Angela H. (2022) Predictable hydrology, habitat and food resources determine fish recruitment dynamics in an incised tropical Australian river. Ecohydrology, 15 (7). e2457.

Garzon, Francesco, Willliams, Collin T., Cochran, Jesse E.M., Tanabe, Lyndsey, Abdulla, Ameer, Berumen, Michael L., Habis, Thamer, Marshall, Paul A., Rodrigue, Mattie, and Hawkes, Lucy A. (2022) A multi-method characterization of Elasmobranch & Cheloniidae communities of the north-eastern Red Sea and Gulf of Aqaba. PLoS ONE, 18 (9). e0275511.

Gauthey, Alice, Backes, Diana, Balland, Jeff, Alam, Iftakharul, Maher, Damien T., Cernusak, Lucas A., Duke, Norman C., Medlyn, Belinda E., Tissue, David T., and Choat, Brendan (2022) The role of hydraulic failure in a massive mangrove die-off event. Frontiers in Plant Science, 13. 822136.

Godfrey, Paul C., Pearson, Richard G., Pusey, Bradley J., and Arthington, Angela H. (2021) Drivers of zooplankton dynamics in a small tropical lowland river. Marine and Freshwater Research, 72 (2). MF20067. pp. 173-185.

Gouezo, Marine, Wolanski, Eric, Critchell, Kay, Fabricius, Katharina, Harrison, Peter, Golbuu, Yimnang, and Doropoulos, Christopher (2021) Modelled larval supply predicts coral population recovery potential following disturbance. Marine Ecology - Progress Series, 661. pp. 127-145.

Garzon-Garcia, Alexandra, Burton, Joanne M., Lewis, Stephen, Bainbridge, Zoe, De Hayr, Rob, Moody, Philip, and Brodie, Jon (2021) The bioavailability of nitrogen associated with sediment in riverine plumes of the Great Barrier Reef. Marine Pollution Bulletin, 173. 112910.

Gillies, Chris L., Castine, Sarah A., Alleway, Heidi K., Crawford, Christine, Fitzsimons, James, Hancock, Boze, Koch, Paul, McAfee, Domonic, McLeod, Ian M., and zu Ermgassen, Philine S.E. (2020) Conservation status of the Oyster Reef Ecosystem of Southern and Eastern Australia. Global Ecology and Conservation, 22. e00988.

Gilby, Ben L., Weinstein, Michael P., Baker, Ronald, Cebrian, Just, Alford, Scott B., Chelsky, Ariella, Colombano, Denise, Connolly, Rod M., Currin, Carolyn A., Feller, Ilka C., Frank, Alyssa, Goeke, Janelle A., Goodridge Gaines, Lucy A., Hardcastle, Felicity E., Henderson, Christopher J., Martin, Charles W., McDonald, Ashley E., Morrison, Blair H., Olds, Andrew D., Rehage, Jennifer S., Waltham, Nathan J., and Ziegler, Shelby L. (2020) Human actions alter tidal marsh seascapes and the provision of ecosystem services. Estuaries and Coasts.

Graham, Erin M., Reside, April E., Atkinson, Ian, Baird, Daniel, Hodgson, Lauren, James, Cassandra S., and VanderWal, Jeremy J. (2019) Climate change and biodiversity in Australia: a systematic modelling approach to nationwide species distributions. Australasian Journal of Environmental Management, 26 (2). pp. 112-123.

Gouezo, Marine, Golbuu, Yimnang, Fabricius, Katharina, Olsudong, Dawnette, Mereb, Geory, Nestor, Victor, Wolanski, Eric, Harrison, Peter, and Doropoulos, Christopher (2019) Drivers of recovery and reassembly of coral reef communities. Proceedings of the Royal Society of London Series B, Biological Sciences, 286 (1897). 20182908.

Grech, Alana, Hanert, Emmanuel, McKenzie, Len, Rasheed, Michael, Thomas, Christopher, Tol, Samantha, Wang, Mingzhu, Waycott, Michelle, Wolter, Jolan, and Coles, Rob (2018) Predicting the cumulative effect of multiple disturbances on seagrass connectivity. Global Change Biology, 24 (7). pp. 3093-3104.

Guo, Zixiao, Li, Xinnian, He, Ziwen, Yang, Yuchen, Wang, Wenqing, Zhong, Cairong, Greenberg, Anthony J., Wu, Chung-I, Duke, Norman C., and Shi, Suhua (2018) Extremely low genetic diversity across mangrove taxa reflects past sea level changes and hints at poor future responses. Global Change Biology, 24 (4). pp. 1741-1748.

Gillies, Chris, McLeod, Ian, Alleway, Heidi K., Cook, Peter, Crawford, Christine, Creighton, Colin, Diggles, Ben, Ford, John, Hamer, Paul, Heller-Wagner, Gideon, Lebrault, Emma, Le Port, Agnes, Russell, Kylie, Sheaves, Marcus, and Warnock, Bryn (2018) Australian shellfish ecosystems: past distribution, current status and future direction. PLoS ONE, 13 (2).

Groom, Rachel, Neil, Kerry, and Marsh, Helene (2018) Suggested improvements to the Australian Environmental Impact Assessment process to benefit marine megafauna. Environmental and Planning Law Journal, 35 (1). pp. 46-59.

Ghandehari, Mehdi Bahadorzadeh, and Jahanbakht, Mohammad (2017) Design and fabrication a metamaterial based absorber for GSM and DCS band application. International Journal of Electrical and Electronic Engineering and Telecommunications, 6 (2).

Gladish, Daniel W., Kuhnert, Petra M., Pagendam, Daniel E., Wikle, Christopher K., Bartley, Rebecca, Searle, Ross D., Ellis, Robin J., Dougall, Cameron, Turner, Ryan D.R., Lewis, Stephen E., Bainbridge, Zoe T., and Brodie, Jon E. (2016) Spatio-temporal assimilation of modelled catchment loads with monitoring data in the Great Barrier Reef. Annals of Applied Statistics, 10 (3). pp. 1590-1618.

Godfrey, Paul C., Arthington, Angela H., Pearson, Richard G., Karim, Fazlul, and Wallace, Jim (2016) Fish larvae and recruitment patterns in floodplain lagoons of the Australian Wet Tropics. Marine & Freshwater Research, 68 (5). pp. 964-979.

Gleason, Sean M., Westoby, Mark, Jansen, Steven, Choat, Brendan, Hacke, Uwe G., Pratt, Robert B., Bhaskar, Radika, Brodribb, Tim J., Bucci, Sandra J., Cao, Kun-Fang, Cochard, Hervé, Delzon, Sylvain, Domec, Jean-Christophe, Fan, Ze-Xin, Feild, Taylor S., Jacobsen, Anna L., Johnson, Daniel M., Lens, Frederic, Maherali, Hafiz, Martínez-Vilalta, Jordi, Mayr, Stefan, McCulloh, Katherine A., Mencuccini, Maurizio, Mitchell, Patrick J., Morris, Hugh, Nardini, Andrea, Pittermann, Jarmila, Plavcova, Lenka, Schreiber, Stefan G., Sperry, John S., Wright, Ian J., and Zanne, Amy E. (2016) Weak tradeoff between xylem safety and xylem-specific hydraulic efficiency across the world's woody plant species. New Phytologist, 209 (1). pp. 123-136.

Guo, Zixiao, Huang, Yelin, Chen, Yongmei, Duke, Norman C., Zhong, Cairong, and Shi, Sugua (2016) Genetic discontinuities in a dominant mangrove Rhizophora apiculata (Rhizophoraceae) in the Indo-Malesian region. Journal of Biogeography, 43. pp. 1856-1868.

Golbuu, Yimnang, Gouezo, Marine, Kurihara, Haruko, Rehm, Lincoln, and Wolanski, Eric (2016) Long-term isolation and local adaptation in Palau's Nikko Bay help corals thrive in acidic waters. Coral Reefs, 35 (3). pp. 909-918.

Grech, Alana, Wolter, Jolan, Coles, Rob, McKenzie, Len, Rasheed, Michael, Thomas, Christopher, Waycott, Michelle, and Hanert, Emmanuel (2016) Spatial patterns of seagrass dispersal and settlement. Diversity and Distributions, 22 (11). pp. 1150-1162.

Gillies, Chris L., Fitzsimons, James A., Branigan, Simon, Hale, Lynne, Hancock, Boze, Creighton, Colin, Alleway, Heidi, Bishop, Melanie J., Brown, Simon, Chamberlain, Dean, Cleveland, Ben, Crawford, Christine, Crawford, Matthew, Diggles, Ben, Ford, John R., Hamer, Paul, Hart, Anthony, Johnston, Emma, McDonald, Tein, McLeod, Ian, Pinner, Breanna, Winstanley, Ross, and Russell, Kylie (2015) Scaling-up marine restoration efforts in Australia. Ecological Management and Restoration, 16 (2). pp. 84-85.

Grech, A., Bos, M., Brodie, J., Coles, R., Dale, A., Gilbert, R., Hamann, M., Marsh, H., Neil, K., Pressey, R.L., Rasheed, M.A., Sheaves, M., and Smith, A. (2013) Guiding principles for the improved governance of port and shipping impacts in the Great Barrier Reef. Marine Pollution Bulletin, 75 (1). pp. 8-20.

Gedan, Keryn B., Kirwan, Matthew L., Wolanski, Eric, Barbier, Edward B., and Silliman, Brian R. (2011) The present and future role of coastal wetland vegetation in protecting shorelines: answering recent challenges to the paradigm. Climatic Change, 106 (1). pp. 7-29.

Golbuu, Yimnang, Wolanski, Eric, Harrison, Peter, Richmond, Robert H., Victor, Steven, and Fabricius, Katharina E. (2011) Effects of land-use change on characteristics and dynamics of watershed discharges in Babeldaob, Palau, Micronesia. Journal of Marine Biology, 2011. 981273. pp. 1-17.

Gratani, Monica, Butler, James R.A., Royee, Frank, Valentine, Peter, Burrows, Damien, Canendo, Warren I., and Anderson, Alex S. (2011) Is validation of indigenous ecological knowledge a disrespectful process? A case study of traditional fishing poisons and invasive fish management from the Wet Tropics, Australia. Ecology and Society, 16 (3). 25. pp. 1-14.

Granek, Elise F., Polasky, Stephen, Kappel, Carrie V., Reed, Denise J., Stoms, David M., Koch, Evamaria W., Kennedy, Chris J., Cramer, Lori A., Hacker, Sally D., Barbier, Edward B., Aswani, Shankar, Ruckelshaus, Mary, Perillo, Gerardo M.E., Silliman, Brian R., Muthiga, Nyawira, Bael, David, and Wolanski, Eric (2010) Ecosystem services as a common language for coastal ecosystem-based management. Conservation Biology, 24 (1). pp. 207-216.

Griffith, M. Patrick, Dowe, John L., Noblick, Larry R., and Danielson, I. Laurie (2009) Archontophoenix at Montgomery Botanical Center. The Palm Journal, 192. pp. 12-14.

Gereta, Emmanuel , Mwangomo, Ephraim, and Wolanski, Eric (2009) Ecohydrology as a tool for the survival of the threatened Serengeti ecosystem. Ecohydrology and Hydrobiology, 9 (1). pp. 115-124.

Gowen, R.J., Tett, P., Kennington, K., Mills, D.K., Shammon, T.M., Stewart, B.M., Greenwood, N., Flanagan, C., Devlin, M., and Wither, A. (2008) The Irish Sea: Is it eutrophic? Estuarine, Coastal and Shelf Science , 76 (2). pp. 239-254.

Griffith, M. Patrick, Noblick, Larry R., Dowe, John L., Husby, Chad E., and Calonje, Michael A. (2008) Cyclone tolerance in New World Arecaceae: biogeographic variation and abiotic natural selection. Annals of Botany, 102 (4). pp. 591-598.

Greiner, Romy, and Lankester, Allyson (2007) Supporting on-farm biodiversity conservation through debt-for-conservation swaps: concept and critique. Land Use Policy, 24 (2). pp. 458-471.

Greiner, Romy, Lankester, Allyson, and Patterson, Louisa (2007) Incentives to enhance the adoption of 'best management practices' by landholders: achieving water quality improvements in the Burdekin River catchment. Report. Burdekin Dry Tropics, Townsville, QLD, Australia.

Graham, Catherine H., Moritz, Craig, and Williams, Stephen E. (2006) Habitat history improves prediction of biodiversity in rainforest fauna. Proceedings of the National Academy of Sciences of the United States of America, 103 (3). pp. 632-636.

Guan, W.B., Kot, S.C., and Wolanski, E. (2005) 3-D fluid-mud dynamics in the Jiaojiang Estuary, China. Estuarine, Coastal and Shelf Science , 65 (4). pp. 747-762.

Greiner, R., Herr, A., Brodie, J., and Haynes, D. (2005) A multi-criteria approach to Great Barrier Reef catchment (Queensland, Australia) diffuse-source pollution problem. Marine Pollution Bulletin, 51 (1). pp. 128-137.

H

Hook, Sharon E., Smith, Rachael A., Waltham, Nathan, and Warne, Michael St.J. (2024) Pesticides in the Great Barrier Reef catchment area: Plausible risks to fish populations. Integrated Environmental Assessment and Management. (In Press)

Hernandez, Stephanie, Duce, Stephanie, Sheaves, Marcus, Murray, Nicholas, and Adams, Vanessa M. (2024) Predicting the impacts of clearing on vegetation communities: a model-based approach for identifying conservation priorities in Queensland, Australia. Australasian Journal of Environmental Management, 31 (1). pp. 40-63.

Hobbs, Jean-Paul A., and Srinivasan, Maya (2024) Structure of Reef Fish Families (Butterflyfishes and Angelfishes) at Isolated Oceanic Reefs in the Indian Ocean: Christmas Island and the Cocos (Keeling) Islands. Diversity, 16 (9). 569.

Haydon, Trent D., Matthews, Jennifer L., Seymour, Justin R., Raina, Jean-Baptiste, Seymour, Jamie E., Chartrand, Kathryn, Camp, Emma F., and Suggett, David J. (2023) Metabolomic signatures of corals thriving across extreme reef habitats reveal strategies of heat stress tolerance. Proceedings of the Royal Society of London Series B, Biological Sciences, 290 (1992). 20221877.

Harrison, H.B., Drane, L., Cresswell, B.J., Evans, R.D., Galbraith, G.F., Srinivasan, M., Taylor, B.M., Williamson, D.H., and Jones, G.P. (2023) Ageing of juvenile coral grouper (Plectropomus maculatus) reveals year-round spawning and recruitment: implications for seasonal closures. Proceedings of the Royal Society of London Series B, Biological Sciences, 290. 20230584.

Hill, Erin, Murphy, Nicholas, Linacre, Adrian, Toop, Simon, and Strugnell, Jan M. (2023) Kinship analysis reveals low dispersal in a hog deer (Axis porcinus) population in Wilsons Promontory National Park, Australia. Wildlife Research, 50 (8-9). pp. 746-756.

Hochkirch, Axel, Bilz, Melanie, Ferreira, Catarina C., Danielczak, Anja, Allen, David, Nieto, Ana, Rondinini, Carlo, Harding, Kate, Hilton-Taylor, Craig, Pollock, Caroline M., Seddon, Mary, Vié, Jean-Christophe, Alexander, Keith N.A., Beech, Emily, Biscoito, Manuel, Braud, Yoan, Burfield, Ian J., Buzzetti, Filippo Maria, Cálix, Marta, Carpenter, Kent E., Chao, Ning Labbish, Chobanov, Dragan, Christenhusz, Maarten J.M., Collette, Bruce B., Comeros-Raynal, Mia T., Cox, Neil, Craig, Matthew, Cuttelod, Annabelle, Darwall, William R.T., Dodelin, Benoit, Dulvy, Nicholas K., Englefield, Eve, Fay, Michael F., Fettes, Nicholas, Freyhof, Jörg, García, Silvia, Criado, Mariana García, Harvey, Michael, Hodgetts, Nick, Ieronymidou, Christina, Kalkman, Vincent J., Kell, Shelagh P., Kemp, James, Khela, Sonia, Lansdown, Richard V., Lawson, Julia M., Leaman, Danna J., Brehm, Joana Magos, Maxted, Nigel, Miller, Rebecca M., Neubert, Eike, Odé, Baudewijn, Pollard, David, Pollom, Riley, Pople, Rob, Asensio, Juan José Presa, Ralph, Gina M., Rankou, Hassan, Rivers, Malin, Roberts, Stuart P.M., Russell, Barry, Sennikov, Alexander, Soldati, Fabien, Staneva, Anna, Stump, Emilie, Symes, Andy, Telnov, Dmitry, Temple, Helen, Terry, Andrew, Timoshyna, Anastasiya, van Swaay, Chris, Väre, Henry, Walls, Rachel H.L., Willemse, Luc, Wilson, Brett, Window, Jemma, Wright, Emma G.E., and Zuna-Kratky, Thomas (2023) A multi-taxon analysis of European Red Lists reveals major threats to biodiversity. PLoS ONE, 18 (11). e0293083.

Hamel, M.A., Marsh, H., Cleguer, C., Garrigue, C., and Oremus, M. (2022) Dugong dugon (New Caledonia subpopulation). The IUCN Red List of Threatened Species, 2022. T218582754A218589361.

He, Ziwen, Feng, Xiao, Chen, Qipian, Li, Liangwei, Li, Sen, Han, Kai, Guo, Zixiao, Wang, Jiayan, Liu, Min, Shi, Chengcheng, Xu, Shaohua, Shao, Shao, Liu, Xin, Mao, Xiaomeng, Xie, Wei, Wang, Xinfeng, Zhang, Rufan, Li, Guohong, Wu, Weihong, Zheng, Zheng, Zhong, Cairong, Duke, Norman C., Boufford, David E., Fan, Guangyi, Wu, Chung I., Ricklefs, Robert E., and Shi, Suhua (2022) Evolution of coastal forests based on a full set of mangrove genomes. Nature Ecology and Evolution, 6. pp. 738-749.

Hoffmann, B., Erwood, K., Ncomanzi, S., Fischer, V., O'Brien, D., and Lee, A. (2022) Management strategies for adult patients with dental anxiety in the dental clinic: a systematic review. Australian Dental Journal, 67 (S1). S3-S13.

Hagger, Valerie, Waltham, Nathan J., and Lovelock, Catherine E. (2022) Opportunities for coastal wetland restoration for blue carbon with co-benefits for biodiversity, coastal fisheries, and water quality. Ecosystem Services, 55. 101423.

Houde, Edward D., Able, Kenneth W., Strydom, Nadine A., Wolanski, Eric, and Arula, Timo (2022) Reproduction, Ontogeny and Recruitment. In: Whitfield, Alan K., Able, Kenneth W., Blaber, Stephen J.M., and Elliott, Michael, (eds.) Fish and Fisheries in Estuaries: A Global Perspective. © 2022 John Wiley & Sons Ltd., Hoboken, NJ, USA, 60 -187.

Hardesty, Britta Denise, Roman, Lauren, Duke, Norman C., Mackenzie, Jock R., and Wilcox, Chris (2021) Abandoned, lost and discarded fishing gear ‘ghost nets’ are increasing through time in Northern Australia. Marine Pollution Bulletin, 173. 112959.

Hewitt, Daniel E., Taylor, Matthew D., Raoult, Vincent, Smith, Timothy M., and Gaston, Troy (2021) Diet-tissue discrimination and turnover of δ 13 C and δ 15 N in muscle tissue of a penaeid prawn. Rapid Communications in Mass Spectrometry, 35 (19). e9167.

Hein, Margaux, Staub, francis, Banaszack, Anastazia, Dallison, Thomas, Deri, Wilfrid, Grimsditch, Gabriel, Jacob, Florina, Loder, Jennifer, McLeod, Ian, Mead, David, Moore, Tom, Newlands, Maxine, Shaver, Elizabeth, Thornton, Hazel, Vardi, Tali, Winters, R. Scott, and Zoccola, Didier (2021) Mapping the global funding landscape for coral reef restoration. External Commissioned Report. International Coral Reef Initiative.

Hein, Margaux Y., Vardi, Tali, Shaver, Elizabeth C., Pioch, Sylvain, Boström-Einarsson, Lisa, Ahmed, Mohamed, Grimsditch, Gabriel, and McLeod, Ian M. (2021) Perspectives on the Use of Coral Reef Restoration as a Strategy to Support and Improve Reef Ecosystem Services. Frontiers in Marine Science, 8. 618303.

Hoffmann, L.R., and Rasheed, M.A. (2021) Weipa Dredge Material Placement Area Marine Macrophyte Assessment 2020. Report. TropWATER, Cairns, QLD, Australia.

He, Ziwen, Xu, Shaohua, Zhang, Zhang, Guo, Wuxia, Lyu, Haomin, Zhong, Cairong, Boufford, David E., Duke, Norman C., The International Mangrove Consortium, and Shi, Suhua (2020) Convergent adaptation of the genomes of woody plants at the land-sea interface. National Science Review, 7 (6). pp. 978-993.

Huerlimann, R., Cooper, M.K., Edmunds, R.C., Villacorta-Rath, C., Le Port, A., Robson, H.L.A., Strugnell, J.M., Burrows, D., and Jerry, D.R. (2020) Enhancing tropical conservation and ecology research with aquatic environmental DNA methods: an introduction for non-environmental DNA specialists. Animal Conservation, 23 (6). pp. 632-645.

Huerlimann, Roger, Maes, Gregory E., Maxwell, Michael J., Mobli, Mehdi, Launikonis, Bradley S., Jerry, Dean R., and Wade, Nicholas M. (2020) Multi-species transcriptomics reveals evolutionary diversity in the mechanisms regulating shrimp tail muscle excitation-contraction coupling. Gene, 752. 144765.

Hamman, Evan, Pointon, Revel, and Purandare, Jemma (2020) Protecting coastal wetland habitat for migratory shorebirds: is Australian law doing enough? Environmental and Planning Law Journal, 37 (4). pp. 477-496.

Hoffmann, Luke, Edwards, Will, York, Paul H., and Rasheed, Michael A. (2020) Richness of primary producers and consumer abundance mediate epiphyte loads in a tropical seagrass system. Diversity, 12 (10). 384.

Harrison, Peter, Chartrand, Katie, and Suggett, David (2020) Scaling up coral restoration using innovative Symbiodinium co‐culture and mass larval supply on reefs. Report. James Cook University, Cairns, QLD, Australia.

Hayes, Matthew A., McClure, Eva C., York, Paul H., Jinks, Kristin I., Rasheed, Michael A., Sheaves, Marcus, and Connolly, Rod M. (2020) The differential importance of deep and shallow seagrass to Nekton assemblages of The Great Barrier Reef. Diversity, 12 (8). 292.

Hopkinson, Charles S., Wolanski, Eric, Brinson, Mark M., Cahoon, Donald R., and Perillo, Gerardo M.E. (2019) Coastal wetlands: a synthesis. In: Perillo, Gerardo M.E., Wolanski, Eric, Cahoon, Donald R., and Hopkinson, Charles S., (eds.) Coastal Wetlands: an integrated ecosystem approach. Elsevier, Amsterdam, Netherlands, pp. 1-75.

He, Ziwen, Li, Xinnian, Yang, Ming, Wang, Xinfeng, Zhong, Cairong, Duke, Norman C., Shi, Suhua, and Wu, Chung-I (2019) Speciation with gene flow via cycles of isolation and migration: insights from multiple mangrove taxa. National Science Review, 6 (2). pp. 275-288.

Hays, Graeme C., Bailey, Helen, Bograd, Steven J., Bowen, W. Don, Campagna, Claudio, Carmichael, Ruth H., Casale, Paolo, Chiaradia, André, Costa, Daniel P., Cuevas, Eduardo, de Bruyn, P. J. Nico, Dias, Maria P., Duarte, Carlos M., Dunn, Daniel C., Dutton, Peter H., Esteban, Nicole, Friedlaender, Ari, Goetz, Kimberly T., Godley, Brendan J., Halpin, Patrick N., Hamann, Mark, Hammerschlag, Neil, Harcourt, Robert, Harrison, Autumn-Lynn, Hazen, Elliott L., Heupel, Michelle R., Hoyt, Erich, Humphries, Nicolas E., Kot, Connie Y., Lea, James S. E., Marsh, Helene, Maxwell, Sara M., McMahon, Clive R., di Sciara, Giuseppe Notarbartolo, Palacios, Daniel M., Phillips, Richard A., Righton, David, Schofield, Gail, Seminoff, Jeffrey A., Simpfendorfer, Colin A., Sims, David W., Takahashi, Akinori, Tetley, Michael J., Thums, Michele, Trathan, Philip N., Villegas-Amtmann, Stella, Wells, Randall S., Whiting, Scott D., Wildermann, Natalie E., and Sequeira, Ana M. M. (2019) Translating marine animal tacking data into conservation policy and management. Trends in Ecology and Evolution, 34 (5). pp. 459-473.

Hays, Graeme C., Alcoverro, Teresa, Christianen, Marjolijn J.A., Duarte, Carlos M., Hamann, Mark, Macreadie, Peter I., Marsh, Helene D., Rasheed, Michael A., Thums, Michele, Unsworth, Richard K.F., York, Paul H., and Esteban, Nicole (2018) New tools to identify the location of seagrass meadows: marine grazers as habitat indicators. Frontiers in Marine Science, 5. 9.

Howley, C., Devlin, M., and Burford, M. (2018) Assessment of water quality from the Normanby River catchment to coastal flood plumes on the northern Great Barrier Reef, Australia. Marine and Freshwater Research, 69 (6). pp. 859-873.

Harris, R.M.B., Beaumont, L.J., Vance, T.R., Tozer, C.R., Remenyi, T.A., Perkins-Kirkpatrick, S.E., Mitchell, P.J., Nicotra, A.B., McGregor, S., Andrew, N.R., Letnic, M., Kearney, M.R., Wernberg, T., Hutley, L.B., Chambers, L.E., Fletcher, M.-S., Keatley, M.R., Woodward, Clifford, Williamson, G., Duke, N.C., and Bowman, D.M.J.S. (2018) Biological responses to the press and pulse of climate trends and extreme events. Nature Climate Change, 8. pp. 579-587.

Hall, Rebecca Jehne, Robson, Simon K.A., and Ariel, Ellen (2018) Colour vision of green turtle (Chelonia mydas) hatchlings: do they still prefer blue under water? PeerJ, 6. 5572.

Hagihara, Rie, Jones, Rhondda E., Sobtzick, Susan, Cleguer, Christophe, Garrigue, Claire, and Marsh, Helene (2018) Compensating for geographic variation in detection probability with water depth improves abundance estimates of coastal marine megafauna. PLoS ONE, 13 (1).

Hammer, Michael P., Allen, Gerald R., Martin, Keith C., Adams, Mark, Ebner, Brendan C., Raadik, Tarmo A., and Unmack, Peter J. (2018) Revision of the Australian Wet Tropics endemic rainbowfish genus Cairnsichthys (Atheriniformes: Melanotaeniidae), with description of a new species. Zootaxa, 4413 (2). pp. 271-294.

Hoogenboom, Mia, Frank, Grace E., Chase, Tory J., Jurriaans, Saskia, Álvarez-Noriega, Mariana, Peterson, Katie, Critchell, Kay, Berry, Kathryn L.E., Nicolet, Katia J., Ramsby, Blake, and Paley S., Allison (2017) Environmental drivers of variation in bleaching severity of Acropora species during an extreme thermal anomaly. Frontiers in Marine Science, 4. 376.

Heindler, Franz M., Alajmi, Fahad, Huerlimann, Roger, Zeng, Chaoshu, Newman, Stephen J., Vamvounis, George, and van Herwerden, Lynne (2017) Toxic effects of polyethylene terephthalate microparticles and Di(2-ethylhexyl)phthalate on the calanoid copepod, Parvocalanus crassirostris. Ecotoxicology and Environmental Safety, 141. pp. 298-305.

Huveneers, Charlie, Stehfest, Kilian M., Simpfendorfer, Colin A., Semmens, Jayson, Hobday, Alistair J., Pederson, Hugh, Stieglitz, Thomas, Vallee, Richard, Webber, Dale, Heupel, Michelle R., and Harcourt, Robert (2017) Application of the Acoustic Propagation Model to a deep-water cross-shelf curtain. Methods in Ecology and Evolution, 8 (10). pp. 1305-1308.

Harris, Todd, Hope, Pandora, Oliver, Eric, Smalley, Robert, Arblaster, Julie, Holbrook, Neil, Duke, Norman, Pearce, Karen, Braganza, Karl, and Bindoff, Nathaniel (2017) Climate drivers of the 2015 Gulf of Carpentaria mangrove dieback. Report. Bureau of Meteorology, Canberra, ACT, Australia.

Harding, Sandra, Trewin, Dennis, Penny, Ann, Ziembicki, Mark, Dale, Allan, Ustan, Taha Sellin, Tan, David, Waltham, Nathan, Laurance, William F., Ceclia, Rogas, Yong, Wik Diew, Kuah, Adrian T., Hassan, Suhaimy, Mcjannet, Kelly, Langston, James, Riggs, Rebecca, Mohd Sharif, Dato' Maimunah, and Jamaludin, Siti Rohaidah (2017) State of the Tropics 2017 report: sustainable infrastructure in the tropics. Report. James Cook University, Townsville, QLD, Australia.

Hammerschlag, Neil, Bell, Ian, Fitzpatrick, Richard, Gallagher, Austin J., Hawkes, Lucy A., Meekan, Mark G., Stevens, John D., Thums, Michele, Witt, Matthew J., and Barnett, Adam (2016) Behavioral evidence suggests facultative scavenging by a marine apex predator during a food pulse. Behavioral Ecology and Sociobiology, 70 (10). pp. 1777-1788.

Huveneers, Charlie, Simpfendorfer, Colin A., Kim, Susan, Semmens, Jayson M., Hobday, Alistair J., Pederson, Hugh, Stieglitz, Thomas, Vallee, Richard, Webber, Dale, Heupel, Michelle R., Peddemors, Vic, and Harcourt, Robert G. (2016) The influence of environmental parameters on the performance and detection range of acoustic receivers. Methods in Ecology and Evolution, 7 (7). pp. 825-835.

Huerlimann, Roger, Zenger, Kyall R., Jerry, Dean R., and Heimann, Kirsten (2015) Phylogenetic analysis of nucleus-encoded acetyl-CoA carboxylases targeted at the cytosol and plastid of algae. PLoS ONE, 10 (7). e0131099. pp. 1-10.

Hall, N.M., Berry, K.L.E., Rintoul, L., and Hoogenboom, M.O. (2015) Microplastic ingestion by scleractinian corals. Marine Biology, 162 (3). pp. 725-732.

Hughes, Terry P., Day, Jon C., and Brodie, Jon (2015) Securing the future of the Great Barrier Reef. Nature Climate Change, 5. pp. 508-511.

Hawdon, Aaron, McJannet, David, and Wallace, Jim (2014) Calibration and correction procedures for cosmic-ray neutron soil moisture probes located across Australia. Water Resources Research, 50 (6). pp. 5029-5043.

Hilbert, David W., Hill, Rosemary, Moran, Catherine, Turton, Stephen M., Bohnet, Iris C., Marshall, Nadine A., Pert, Petina L., Stoeckl, Natalie, Murphy, Helen T., Reside, April E., Laurance, Susan G.W., Alamgir, Mohammed, Coles, Rob, Crowley, Gabriel, Curnock, Matt, Dale, Allan, Duke, Norman C., Esparon, Michelle, Farr, Marina, Gillet, Sarah, Gooch, Margaret, Fuentes, Mariana, Hamann, Mark, James, Cassandra S., Kroon, Frederieke J., Larson, Silva, Lyons, Pethie, Marsh, Helene, Meyer Steiger, Dagmar, Sheaves, Marcus, and Westcott, David (2014) Climate change issues and impacts in the Wet Tropics NRM cluster region. Report. James Cook University, Cairns, QLD, Australia.

Hilbert, David W., Hill, Rosemary, Moran, Catherine, Turton, Steve M., Bohnet, Iris C., Marshall, Nadine A., Pert, Petina L., Stoeckl, Natalie, Murphy, Helen T., Reside, April E., Laurance, Susan G.W., Alamgir, Mohammed, Coles, Rob, Crowley, Gabriel, Curnock, Matthew, Dale, Allan, Duke, Norman C., Esparon, Michelle, Farr, Marina, Gillet, Sarah, Gooch, Margaret, Fuentes, Marianna, Hamann, Mark, James, Cassandra S., Kroon, Frederieke J., Larson, Silva, Lyons, Pethie, Marsh, Helene, Meyer Steiger, Dagmar, Sheaves, Marcus, and Westcott, David A. (2014) Key messages extracted from the Synthesis of Climate Change Issues and Impacts in the Wet Tropics NRM Cluster Region. Report. James Cook University, Cairns, QLD, Australia.

Hamann, Mark, Grech, Alana, Wolanski, Eric, and Lambrechts, Jonathan (2011) Modelling the fate of marine turtle hatchlings. Ecological Modelling, 222 (8). pp. 1515-1521.

Hughes, T.P., Bellwood, D.R., Baird, A.H., Brodie, J., Bruno, J.F., and Pandolfi, J.M. (2011) Shifting base-lines, declining coral cover, and the erosion of reef resilience: comment on Sweatman et al. (2011). Coral Reefs, 30 (3). pp. 653-660.

Heffernan, Janet, Barry, Jon, Devlin, Michelle, and Fryer, Rob (2010) A simulation tool for designing nutrient monitoring programmes for eutrophication assessments. Environmetrics, 21 (1). pp. 3-20.

Hassani, H.R., and Jahanbakht, M. (2008) Method of moment analysis of finite phased array of aperture coupled circular microstrip patch antennas. Progress In Electromagnetics Research B, 4. pp. 197-210.

Hassan, Marina H., Beatty, S.J. , Morgan, D.L., Doupe, R.G., and Lymbery, A.J. (2008) An introduced parasite, Lernaea cyprinacea L., found on native freshwater fishes in the south west of Western Australia. Journal of the Royal Society of Western Australia, 91 (2). pp. 149-153.

Haynes, David, Brodie, Jon, Waterhouse, Jane, Bainbridge, Zoe, Bass, Deb, and Hart, Barry (2007) Assessment of the water quality and ecosystem health of the Great Barrier Reef (Australia): conceptual models. Environmental Management, 40 (6). pp. 993-1003.

Hateley, L.R., Armour, J.D., Brodie, J., Faithful, J., Pitt, G.L., and Nelson, P.N. (2007) Modelling, monitoring and sediment tracing in the Tully river catchment, North Queensland: a comparison of techniques. In: Proceedings of MODSIM07: the International Congress on Modelling and Simulation. pp. 867-873. From: MODSIM07: International Congress on Modelling and Simulation, 10-13 December 2007, Christchurch, New Zealand.

I

Iles, J.A., Cartwright, P., Johns, J., and Waltham, N.J. (2024) Port of Weipa ambient marine water quality monitoring program: Annual report 2022–2023. Report. TropWATER, James Cook University, Townsville, QLD, Australia. (In Press)

Iles, J.A., Cartwright, P., Johns, J., and Waltham, N.J. (2023) Quality control procedure for marine water quality logger data. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Iles, J.A., Cartwright, P.J., and Waltham, N.J. (2023) Whitsunday Water Quality Monitoring Blueprint for Tourism Operators: Annual report 2022-2023. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Iles, J.A., Cartwright, P.J., and Waltham, N. (2022) TSRA Groundwater Monitoring: Final Report 2022. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Iles, Jordan A., Pettit, Neil E., Cawthray, Greg, and Grierson, Pauline F. (2022) Chemotaxonomic responses of autotrophic periphyton communities to nutrient additions in pools of an intermittent stream. Freshwater Biology, 67 (12). pp. 2148-2160.

Iles, Jordan A., Pettit, Neil E., Donn, Michael J., and Grierson, Pauline F. (2022) Phosphorus sorption characteristics and interactions with leaf litter‑derived dissolved organic matter leachate in iron‑rich sediments of a sub‑tropical ephemeral stream. Aquatic Sciences, 84 (4). 56.

Iles, Jordan, and Waltham, Nathan (2021) Whitsunday Water Quality Monitoring Blueprint for Tourism Operators: Quarterly update - January 2021 Report 21/02. Report. TropWATER, Townsville.

Iles, J.A., and Waltham, N.J. (2020) Whitsunday Water Quality Monitoring Blueprint for Tourism Operators: Quarterly update - July 2020: A Report for Reef Catchments (Mackay Whitsunday Isaac) Limited. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Iles, Jordan, and Waltham, Nathan (2021) Whitsunday Water Quality Monitoring Blueprint for Tourism Operators: Final report. Report. James Cook University, Townsville, QLD, Australia. (Unpublished)

Iles, Jordan, and Waltham, Nathan (2021) Whitsunday Water Quality Monitoring Blueprint for Tourism Operators: Quarterly update - April 2021. Report. TropWATER, Townsville, QLD, Australia. (Unpublished)

J

Jahanbakht, Mohammad, Rahimi Azghadi, Mostafa, and Waltham, Nathan J. (2023) Semi-supervised and weakly-supervised deep neural networks and dataset for fish detection in turbid underwater videos. Ecological Informatics, 78. 102303.

Jahanbakht, Mohammad, Xiang, Wei, Waltham, Nathan J., and Rahimiazghadi, Mostafa (2022) Distributed Deep Learning in the Cloud and Energy-efficient Real-time Image Processing at the Edge for Fish Segmentation in Underwater Videos Segmentation in Underwater Videos. IEEE Access, 10. pp. 117796-117807.

Jing, Zhaowei, Yu, Wusheng, Lewis, Stephen, Thompson, Lonnie G., Xu, Jie, Zhang, Jingyi, Xu, Baiqing, Wu, Guangjian, Ma, Yaoming, Wang, Yong, and Guo, Rong (2022) Inverse altitude effect disputes the theoretical foundation of stable isotope paleoaltimetry. Nature Communications, 13. 4371.

Jones, Geoffrey P., Srinivasan, Maya, Galbraith, Gemma F., Berumen, Michael L., and Planes, Serge (2022) Saving Nemo: Extinction Risk, Conservation Status, and Effective Management Strategies for Anemonefishes. In: Laudet, Vincent, and Ravasi, Timothy, (eds.) Evolution, Development and Ecology of Anemonefishes. CRC Press, Boca Raton, FL, USA, pp. 285-298.

Joy, Michael K., Rankin, Douglas A., Wöhler, Lara, Boyce, Paul, Canning, Adam, Foote, Kyleisha J., and McNie, Pierce M. (2022) The grey water footprint of milk due to nitrate leaching from dairy farms in Canterbury, New Zealand. Australasian Journal of Environmental Management, 29 (2). pp. 177-199.

Jing, Zhaowei, Yu, Wusheng, Schneider, Andreas, Borsdorff, Tobias, Landgraf, Jochen, Lewis, Stephen, Zhang, Jingyi, Tang, Wenjun, Ma, Yaoming, Xu, Baiqing, and Qu, Dongmei (2021) Interannual variation in stable isotopes in water vapor over the Northern Tibetan Plateau Linked to ENSO. Geophysical Research Letters, 48 (8). e2021GL092708.

Jarvis, Jessie C., McKenna, Skye A., and Rasheed, Michael A. (2021) Seagrass seed bank spatial structure and function following a large-scale decline. Marine Ecology Progress Series, 665. pp. 75-87.

Joy, M.K., and Canning, A.D. (2021) Shifting baselines and political expediency in New Zealand's freshwater management. Marine and Freshwater Research, 72. pp. 456-461.

Jackson, Emma L., Smith, Timothy M., York, Paul H., Nielsen, Jesper, Irving, Andrew D., and Sherman, Craig D. H. (2021) An assessment of the seascape genetic structure and hydrodynamic connectivity for sub-tropical seagrass restoration. Restoration Ecology, 29 (1). e13269.

Jinks, Kristin I., Rasheed, Michael A., Brown, Christopher J., Olds, Andrew D., Schlacher, Thomas A., Sheaves, Marcus, York, Paul H., and Connolly, Rod M. (2020) Saltmarsh grass supports fishery food webs in subtropical Australian estuaries. Estuarine, Coastal and Shelf Science, 238. 106719.

Jinks, Kristin I., Brown, Christopher J., Rasheed, Michael A., Scott, Abigail L., Sheaves, Marcus, York, Paul H., and Connolly, Rod M. (2019) Habitat complexity influences the structure of food webs in Great Barrier Reef seagrass meadows. Ecosphere, 10 (11). e02928.

Jones, Benjamin L., Unsworth, Richard K.F., McKenzie, Len J., Yoshida, Rudi L., and Cullen-Unsworth, Leanne (2018) Crowdsourcing conservation: the role of citizen science in securing a future for seagrass. Marine Pollution Bulletin, 134. pp. 210-215.

James, Cassandra S., Reside, April E., VanDerWal, Jeremy, Pearson, Richard G., Burrows, Damien, Capon, Samatha J., Harwood, Thomas D., Hodgson, Lauren, and Waltham, Nathan J. (2017) Sink or swim? potential for high faunal turnover in Australian rivers under climate change. Journal of Biogeography, 44 (3). pp. 489-501.

Jennerjahn, T.C., Gilman, E., Krauss, K.W., Lacerda, L.D., Nordhaus, I., and Wolanski, E. (2017) Mangrove ecosystems under climate change. In: Rivera-Monroy, Victor H., Lee, Shing Yip, Kristensen, Erik, and Twilley, Robert R., (eds.) Mangrove Ecosystems: A Global Biogeographic Perspective - Structure, Function and Services. Springer International Publishing, Cham, Switzerland, pp. 211-244.

James, Cassandra, Templeman, Shelley, and Burrows, Damien (2017) Townsville field training area ecological monitoring November 2016 - July 2017. External Commissioned Report. James Cook University, Townsville, QLD, Australia.

James, Cassandra S., Reid, Michael A., and Capon, Samatha J. (2016) Climate change and the future of Australian riverine vegetation. In: Capon, Samatha J., James, Cassandra S., and Reid, Michael, (eds.) Vegetation of Australian Riverine Landscapes: biology, ecology and management. CSIRO publishing, Melbourne, VIC, Australia, pp. 387-407.

James, Cassandra S., Mackay, Stephen J., Arthington, Angela H., Capon, Samatha J., Barnes, Anna, and Pearson, Ben (2016) Does stream flow structure woody riparian vegetation in subtropical catchments? Ecology and Evolution, 6 (16). pp. 5950-5963.

James, Cassandra S., Capon, Samatha J., and Quinn, Gerry P. (2015) Nurse plant effects of a dominant shrub (Duma florulenta) on understorey vegetation in a large, semiarid wetland in relation to flood frequency and drying. Journal of Vegetation Science, 26 (5). pp. 985-994.

Jarvis, Jessie C., and Moore, Kenneth A. (2015) Effects of seed source, sediment type, and burial depth on mixed-annual and perennial Zostera marina L. seed germination and seedling establishment. Estuaries and Coasts, 38 (3). pp. 964-978.

Jerry, Dean, Noble, Tansyn, Basiita, Rose, Robson, Heather, and Burrows, Damien (2015) Environmental DNA (eDNA) survey of Tilapia infestations in the Moranbah/Isaac region. Report. James Cook University, Townsville, QLD, Australia.

Jerry, Dean, Noble, Tansyn, Robson, Heather, and Burrows, Damien (2015) Environmental DNA (eDNA) survey of the Tilapia in the Cudgeon Region, NSW. Report. James Cook University, Cairns, QLD, Australia.

Jarvis, J.C., Scott, E.L., Bryant, C.V., and Rasheed, M.A. (2015) Port Curtis seagrass seed bank density and viability studies: year 1. Report. James Cook University, Cairns, QLD, Australia.

Jarvis, Jessie C., Moore, Kenneth A., and Kenworthy, W. Judson (2014) Persistence of Zostera marina L. (eelgrass) seeds in the sediment seed bank. Journal of Experimental Marine Biology and Ecology, 459. pp. 126-136.

Jackson, Emma, Nielsen, Jesper, Weatherall, Emily, Bryant, Catherine, Jones, Conor, Hendry, Rebecca, and Campbell, Marnie (2014) Predicting seagrass connectivity in a disturbed environment. In: 51st Australian Marine Sciences Association annual conference: investigating our marine nation: abstracts1st Annual Conference: program handbook and abstracts. p. 101. From: AMSA 2014 Investigating our Marine Nation: 51st Annual Conference of the Australian Marine Sciences Association, 6-10 July 2014, Canberra, Australian Capital Territory.

Jarvis, J.C., Rasheed, M.A., McKenna, S.A., and Sankey, T. (2014) Seagrass habitat of Cairns Harbour and Trinity Inlet: annual and quarterly monitoring report 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Jarvis, Jessie C., Brush, Mark J., and Moore, Kenneth A. (2014) Modeling loss and recovery of Zostera marina beds in the Chesapeake Bay: the role of seedlings and seed-bank viability. Aquatic Botany, 113. pp. 32-45.

Jerry, Dean, Noble, Tansyn, Robson, Heather, and Burrows, Damien (2014) Environmental DNA (eDNA) survey of Tilapia in the lower Pioneer catchment. Report. James Cook University, Townsville, QLD, Australia.

Jerry, Dean, Noble, Tansyn, Robson, Heather, and Burrows, Damien (2014) Environmental DNA (eDNA) survey of Tilapia infestations in the Fitzroy River Basin. Report. James Cook University, Townsville, QLD, Australia.

Jarvis, J.C., McKenna, S.A., and Rasheed, M.A. (2013) Seagrass habitat of Cairns Harbour and Trinity Inlet: sediment seed bank analysis. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

James, Cassandra, Vanderwal, Jeremy, Capon, Samantha, Hodgson, Lauren, Waltham, Nathan, Ward, Doug, Anderson, Barbara, and Pearson, Richard (2013) Identifying Climate Refuges for Freshwater Biodiversity Across Australia: identification and characterisation of freshwater refuges in the face of climate change. National Climate Change Adaptation Research Facility, Gold Coast, QLD, Australia.

Jahanbakht, M., and Lotfi-Neyestanak, A.A. (2011) Coplanar MEMS Phased Array Antenna Using Koch Fractal Geometry. Progress In Electromagnetics Research M, 17. pp. 29-42.

Johnson, Johanna, Brando, Vittorio, Devlin, Michelle, McKenzie, Len, Morris, Sheridan, Schaffelke, Britta, Thompson, Angus, Waterhouse, Jane, and Waycott, M (2011) Reef Rescue Marine Monitoring Program: 2009/2010 synthesis report. Report. Reef and Rainforest Research Centre, Cairns, QLD.

Jones, David L., and Dowe, John L. (2004) Nomenclatural changes for two Australian species of Livistona R. Br. (Arecaceae). Austrobaileya, 6 (4). pp. 979-981.

K

Krause, Johannes R., Lefcheck, Jonathan S., Orth, Robert J., Patrick, Christopher J., Lizcano-Sandoval, Luis, McKenzie, Len J., Reshitnyk, Luba, Manning, Faye, Monteith, Zachary L., Hessing-Lewis, Margot, York, Paul H., Rasheed, Michael A., Carter, Alex, McKenna, Skye, Vaudrey, Jamie M.P., Connolly, Rod M., Fourqurean, James W., and Duffy, Emmett (2024) Diverging trends of coastal ecosystem extent and condition: global seagrass monitoring highlights the need for coordinated data collection at multiple scales. In: ISBW15 & WSC2024 Book of Abstracts. 343. From: ISBW 2024: International Seagrass Biology Workshop, 17-21 June 2024, Naples, Italy.

Kingsford, Michael J., and Wolanski, Eric (2024) The Emergence of Biophysical Sciences for the Great Barrier Reef. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Oceanographic Processes of Coral Reefs. CRC Press, Boca Raton, FL, USA, pp. 3-8.

Kwong, Sarah Lok Ting, Villacorta Rath, Cecilia, Pratchett, Morgan, and Uthicke, Sven (2023) Telomere dynamics in the Pacific crown-of-thorns seastar (Acanthaster cf. solaris): effect of age, diet, and tissue type. Coral Reefs, 42. pp. 977-985.

Kingsford, Michael J., Krunes, Emily A., and Hall, April E. (2022) Testing the critical size at settlement hypothesis for two species of coral reef fish. Marine Ecology Progress Series, 681. pp. 87-101.

Karim, Fazlul, Wallace, Jim, Abbott, Brett, Nicholas, Mike, and Waltham, Nathan J. (2021) Modelling the removal of an earth bund to maximise seawater ingress into a coastal wetland. Estuarine, Coastal and Shelf Science, 263. 107626.

Kimball, Matthew, Connolly, Rod M., Alford, Scott B., Colombano, Denise D., James, W. Ryan, Kenworthy, Matthew D., Norris, Gregory S., Ollerhead, Jeff, Ramsden, Sarah, Rehage, Jennifer S., Sparks, Eric L., Waltham, Nathan J., Worthington, Thomas A., and Taylor, Matthew D. (2021) Novel applications of technology for advancing tidal marsh ecology. Estuaries and Coasts, 44. pp. 1568-1578.

Kwong, Lok Ting, Villacorta-Rath, Cecilia, Doyle, Jason, and Uthicke, Sven (2021) Quantifying shedding and degradation rates of environmental DNA (eDNA) from Pacific crown-of-thorns seastar (Acanthaster cf. solaris). Marine Biology, 168. 85.

Kelleway, Jeffrey J., Iles, Jordan A., Kobayashi, Tsuyoshi, and Ling, Joanne (2021) Resilience of a native soil seed bank in a floodplain lake subjected to cropping, grazing and extended drought. Marine and Freshwater Research, 72 (6). pp. 787-799.

Kihwele, E.S., Veldhuis, M.P., Loishooki, A., Hongoa, J.R., Hopcraft, J.G.C., Olff, H., and Wolanski, E. (2021) Upstream land-use negatively affects river flow dynamics in the Serengeti National Park. Ecohydrology and Hydrobiology, 21 (1). pp. 1-12.

Kingsford, M. J., and Wolanski, E. (2019) Oceanography. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef. Biology, Environment and Management. CSIRO Publishing, Clayton South, VIC, Australia, pp. 37-49.

Kuhnert, P.M., Pagendam, D.E., Bartley, R., Gladish, D.W., Lewis, S.E., and Bainbridge, Z.T. (2018) Making management decisions in the face of uncertainty: a case study using the Burdekin catchment in the Great Barrier Reef. Marine and Freshwater Research, 69 (8). pp. 1187-1200.

Kelly, E., Martin, P.A.J., Gibson-Kueh, S., Morgan, D.L., Ebner, B.C., Donaldson, J., Buller, N., Crook, D.A., Brooks, S., Davis, Aaron, Hammer, M.P., Foyle, L., Hair, S., and Lymbery, A.J. (2018) First detection of Edwardsiella ictaluri (Proteobacteria: Enterobacteriaceae) in wild Australian catfish. Journal of Fish Diseases, 41 (2). pp. 199-208.

Kihwele, Emilian, Muse, Epaphras, Magomba, Evance, Mnaya, Bakari, Nassoro, Ahamed, Banga, Paul, Murashani, Edimund, Irmamasita, Daniel, Kiwango, Halima, Birkett, Charon, and Wolanski, Eric (2018) Restoring the perennial Great Ruaha River using ecohydrology, engineering and governance methods in Tanzania. Ecohydrology and Hydrobiology, 18 (2). pp. 120-129.

Kiwango, Halima, Njau, Karoli N., and Wolanski, Eric (2018) The application of nutrient budget models to determine the ecosystem health of the Wami Estuary, Tanzania. Ecohydrology and Hydrobiology, 18 (2). pp. 107-119.

Karsten, Salomo, Smith, James F., Feild, Taylor S., Samain, Marie-Stephanie, Bond, Laura, Davidson, Christopher, Zimmers, Jay, Neinhuis, Christoph, and Wanke, Stefan (2017) The emergence of earliest angiosperms may be earlier than fossil evidence indicates. Systematic Botany, 42 (4). pp. 607-619.

Karim, Fazlul, Petheram, Cuan, Marvanek, Steve, Ticehurst, Catherine, Wallace, Jim, and Hasan, Masud (2016) Impact of climate change on floodplain inundation and hydrological connectivity between wetlands and rivers in a tropical river catchment. Hydrological Processes, 30 (10). pp. 1574-1593.

Kelly, E., Gibson-Kueh, S., Ebner, B.C., Donaldson, J.A., Yang, R., Buller, N., Hair, S., Morgan, D.L., and Lymbery, A.J. (2016) Observations on the health of Tandanus tropicanus (Teleostei: Plotosidae) from an Australian river system. Australian Zoologist, 38 (1). pp. 83-89.

Keith, Philippe, Lord, Clara, Boseto, David, and Ebner, Brendan C. (2016) A new species of Lentipes (Gobiidae) from the Solomon Islands. Cybium, 40 (2). pp. 139-146.

Kilminster, Kieryn, McMahon, Kathryn, Waycott, Michelle, Kendrick, Gary A., Scanes, Peter, McKenzie, Len, O'Brien, Katherine R., Lyons, Mitchell, Ferguson, Angus, Maxwell, Paul, Glasby, Tim, and Udy, James (2015) Unravelling complexity in seagrass systems for management: Australia as a microcosm. Science of the Total Environment, 534. pp. 97-109.

Kroon, F., Phillips, S., Burrows, D., and Hogan, A. (2015) Presence and absence of non-native fish species in the Wet Tropics region, Australia. Journal of Fish Biology, 86 (3). pp. 1177-1185.

Kiwango, Halima, Njau, Karoli N., and Wolanski, Eric (2015) The need to enforce minimum environmental flow requirements in Tanzania to preserve estuaries: case study of mangrove-fringed Wami River estuary. Ecohydrology and Hydrobiology, 15 (4). pp. 171-181.

Karim, Fazlul, Kingsey-Henderson, Anne, Wallace, Jim, Godfrey, Paul, Arthington, Angela H., and Pearson, Richard G. (2014) Modelling hydrological connectivity of tropical floodplain wetlands via a combined natural and artificial stream network. Hydrological Processes, 28 (23). pp. 5696-5710.

King, Juliette, Alexander, Frances, and Brodie, Jon (2013) Regulation of pesticides in Australia: the Great Barrier Reef as a case study for evaluating effectiveness. Agriculture, Ecosystems and Environment, 180. pp. 54-67.

Kennedy, Karen, Schroeder, Thomas, Shaw, Melanie, Haynes, David, Lewis, Stephen, Bentley, Christie, Paxman, Chris, Carter, Steve, Brando, Vittorio E., Bartkow, Michael, Hearn, Laurence, and Mueller, Jochen F. (2012) Long term monitoring of photosystem II herbicides: correlation with remotely sensed freshwater extent to monitor changes in the quality of water entering the Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 292-305.

Kuhnert, Petra M., Henderson, Brent L., Lewis, Stephen E., Bainbridge, Zoe T., Wilkinson, Scott N., and Brodie, Jon E. (2012) Quantifying total suspended sediment export from the Burdekin River catchment using the loads regression estimator tool. Water Resources Research, 48 (4). W04533. pp. 1-18.

Kroon, Frederieke J., Kuhnert, Petra M., Henderson, Brent L., Wilkinson, Scott N., Kinsey-Henderson, Anne, Abbot, Brett, Brodie, Jon E., and Turner, Ryan D.R. (2012) River loads of suspended solids, nitrogen, phosphorus and herbicides delivered to the Great Barrier Reef lagoon. Marine Pollution Bulletin, 65 (4-9). pp. 167-181.

Kennedy, Karen, Devlin, Michelle, Bentley, Christie, Lee-Chue, Kristie, Paxman, Chris, Carter, Steve, Lewis, Stephen, Brodie, Jon, Guy, Ellia, Vardy, Suzanne, Martin, Katherine C., Jones, Alison, Packett, Robert, and Mueller, Jochen F. (2012) The influence of a season of extreme wet weather events on exposure of the World Heritage Area Great Barrier Reef to pesticides. Marine Pollution Bulletin, 64 (7). pp. 1495-1507.

Koch, Evamaria W., Barbier, Edward B., Silliman, Brian R., Reed, Denise J., Perillo, Gerardo M.E., Hacker, Sally D., Granek, Elise F., Primavera, Jurgenne H., Muthiga, Nyawira, Polasky, Stephen, Halpern, Benjamin S., Kennedy, Christopher J., Kappel, Carrie V., and Wolanski, Eric (2009) Non-linearity in ecosystem services: temporal and spatial variability in coastal protection. Frontiers in Ecology and the Environment, 7 (1). pp. 29-37.

Kroon, F.J., and Brodie, J. (2009) Catchment management and health of coastal ecosystems: synthesis and future research. Marine and Freshwater Research, 60 (11). pp. 1196-1200.

Kiwango, Yustina Andrew, and Wolanski, Eric (2008) Papyrus wetlands, nutrients balance, fisheries collapse, food security, and Lake Victoria level decline in 2000–2006. Wetlands Ecology and Management, 16 (2). pp. 89-96.

Kingsford, M.J., and Wolanski, E. (2008) Oceanography. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 28-39.

Kutt, Alex, and Schulz, Martin (2000) Distribution and habitat of the flute-nosed bat Murina florium (Chiroptera: Vespertilionidae) in the wet tropics of north-eastern Queensland. Australian Zoologist, 31 (3). pp. 458-467.

Kutt, A., and Burrows, D. (1999) Cairns International Airport fauna surveys. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A.S. (1999) High frequency modernization project Speed Creek Receive Station: additional flora survey. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A.S. (1999) Vertebrate fauna survey of the Desert Uplands Bioregion: interim final report(data). Report. James Cook University, Townsville, QLD, Australia.

Kutt, A., and Kemp, J. (1998) Flora and fauna survey of the Inkerman and Molongle blocks, Burdekin River irrigation area, right bank. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A., and Kemp, J. (1998) Reconnaissance flora and fauna survey of three areas near Bowen associated with the proposed Elliot Main Channel extension. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A. (1998) Survey for northern hopping-mouse (Notomys aquilo) and marine turtle nesting at the proposed Cable Beach landfall, PNG gas project. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A. (1997) Billwon Weir and Tinaroo Stage II impact assessment study: terrestrial fauna. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A., and Burnett, S. (1997) Papua New Guinea to Queensland gas project: vertebrate fauna survey and review, Townsville to Gladstone. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A.S. (1996) Chalumbin-Woree 275kv transmission line: flora and fauna assessment of Crowleys Creek, Cairns. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A.S. (1996) Great Palm Island proposed Francis Creek dam. Draft environmental impact statement: supplementary fauna survey. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A. (1996) High frequency modernisation project: flora and fauna assessment. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A., Burrows, D., and Cummings, R. (1996) Pandora onshore gas pipeline flora and fauna studies: Palmer River to Townsville. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A.S. (1996) Ross Island development, Townsville, baseline studies: an investigation of the mixed flying fox camp and ibis colony, potential impacts and recommendations for monitoring. Report. James Cook University, Townsville, QLD, Australia.

L

Lewis, Stephen E., Baird, Mark E., Bainbridge, Zoe, and Davis, Aaron M. (2024) Correspondence on “Submarine Groundwater Discharge Exceeds River Inputs as a Source of Nutrients to the Great Barrier Reef”. Environmental Science and Technology, 58 (23). pp. 10409-10410.

Lekammudiyanse, Manuja U., Saunders, Megan I., Flint, Nicole, Irving, Andrew, Aiken, Christopher, Clark, Dana E., Berthelsen, Anna, Hindmarsh, Breanna, Hooks, Rachel, Connolly, Rod M., Sievers, Michael, Rasheed, Michael A., Smith, Timonthy M., Glasby, Tim M., Sherman, Craig D.H., and Jackson, Emma L. (2024) Environmental drivers of flowering in the genus Zostera and spatio-temporal variability of Zostera muelleri flowering in Australasia. Aquatic Conservation: marine and freshwater ecosystems, 34 (2). e4068.

Lewis, Stephen, McCloskey, Gillian, Bainbridge, Zoe, Davis, Aaron, Bartley, Rebecca, and Turner, Ryan (2024) Sediment and nutrient flux from land. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Oceanographic Processes of Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, FL, USA, pp. 126-142.

Losciale, Riccardo, Day, Jon C., Rasheed, Michael A., and Heron, Scott F. (2024) The vulnerability of World Heritage seagrass habitats to climate change. Global Change Biology, 30 (1). e17113.