Collins, William, Bellwood, David, Morais Araujo, Renato, Waltham, Nathan, and Siqueira Correa, Alexandre (2024) Diel movement patterns in nominally nocturnal coral reef fishes (Haemulidae and Lutjanidae): Intra vs. Interspecific variation. Coral Reefs. (In Press)

Hook, Sharon E., Smith, Rachael A., Waltham, Nathan, and Warne, Michael St.J. (2024) Pesticides in the Great Barrier Reef catchment area: Plausible risks to fish populations. Integrated Environmental Assessment and Management. (In Press)

Iles, J.A., Cartwright, P., Johns, J., and Waltham, N.J. (2024) Port of Weipa ambient marine water quality monitoring program: Annual report 2022–2023. Report. TropWATER, James Cook University, Townsville, QLD, Australia. (In Press)

Cvitanovic, Christopher, Acedera, Mari-Ann M., Samonte, Preciosa C., Baria-Rodriguez, Maria Vanessa, Cabaitan, Patrick, Phuong Dzung, Nguyen Thi, Binh, Nguyen Thanh, Luyen, Nguyen Hanh, Khac Bat, Nguyen Khac, Tran, Nam Anh, Wibowo, Arif, Roeroe, Mi Pingkan Katharina, Muawanah, Umi, Camp, Emma F., Chartrand, Kathyrn M., Diedrich, Amy, Donnelly, Ryan, Bee, Cameron, Fabinyi, Michael, Scott, Abigail L., and Van Putten, Ingrid (2024) Roadmap for improving coral reef restoration practices in Southeast Asia. Ecological Management and Restoration. (In Press)

Thompson-Saud, G., Grech, A., Choukroun, S., Vásquez, S.I., Salas, C., and Ospina‐Alvarez, A. (2024) The biophysical dynamics of giant kelp, Macrocystis pyrifera: Seasonal patterns and dispersal mechanisms in the southeast Pacific. Journal of Biogeography. (In Press)

Sheaves, M., Baker, R., dos Santos Abrantes, K., Barnett, A., Bradley, M., Dubuc, A., Mattone, C., Sheaves, J., and Waltham, N. (2024) Consequences for nekton of the nature, dynamics, and ecological functioning of tropical tidally dominated ecosystems. Estuarine, Coastal and Shelf Science, 304. 108825.

Duke, Norman, and Lee, Shing Yip (2024) 2.4. The diversity of mangroves. Towards an authoritative list of the world’s mangrove plants. Report Section. Global Mangrove Alliance.

Cleguer, C., Hamel, M.A., Rankin, R.W., Langlois, L., Edwards, C., and Marsh, H. (2024) 2023 Dugong Aerial Survey: Mission Beach to Cape York. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Teodosio, Maria Alexandra Anica, Faria, Silvana, Baptista, Vânia, and Wolanski, Eric (2024) Applying Ecohydrology to Promote a Nature-Based Solution. In: UNSPECIFIED, (ed.) Scientific Innovations for Coastal Resource Management. IGI Global, Hershey PA, USA, pp. 199-228.

Cartwright, Paula, Browne, Nicola, Fearns, Peter, O'leary, Mick, and Lowe, Ryan (2024) Applying ensemble climate models to predict the fate of marginal coral reefs already existing at thermal and turbidity limits in arid tropical Australia. Climate Resilience and Sustainability, 3 (1). e66.

Vulliet, Cecile, Koci, Jack, Jarihani, Ben, Sheaves, Marcus, and Waltham, Nathan (2024) Assessing Tidal Hydrodynamics in a Tropical Seascape Using Structure-from‐Motion Photogrammetry and 2D Flow Modelling. Estuaries and Coasts, 47. pp. 352-375.

Shanafield, Margaret, Blanchette, Melanie, Daly, Edoardo, Wells, Naomi, Burrows, Ryan M, Korbel, Kathryn, Rau, Gabriel C., Bourke, Sarah, Wakelin-King, Gresley, Holland, Aleicia, Ralph, Timothy, McGrath, Gavan, Robson, Belinda, Fowler, Keirnan, Andersen, Martin S., Yu, Songyan, Jones, Christopher S., Waltham, Nathan, Banks, Eddie W., Flatley, Alissa, Leigh, Catherine, Maxwell, Sally, Siebers, Andre, Bond, Nick, Beesley, Leah, Hose, Grant, Iles, Jordan, Cartwright, Ian, Reid, Michael, de Castro Tayer, Thiaggo, and Duvert, Clement (2024) Australian non-perennial rivers: Global lessons and research opportunities. Journal of Hydrology, 634. 130939.

Thibault, Martin, Letourneur, Yves, Cleguer, Christophe, Bonneville, Claire, Briand, Marine J., Derville, Solene, Bustamante, Paco, and Garrigue, Claire (2024) C and N stable isotopes enlighten the trophic behaviour of the dugong (Dugong dugon). Scientific Reports, 14. 896.

Waltham, Nathan J., Cartwright, Paula, Motson, Katie, Sheaves, Marcus, and Ronan, Mike (2024) Coastal Wetland Restoration: Case Studies from Great Barrier Reef Catchments. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Oceanographic Processes of Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, FL, USA, pp. 358-373.

Lewis, Stephen E., Baird, Mark E., Bainbridge, Zoe, and Davis, Aaron M. (2024) Correspondence on “Submarine Groundwater Discharge Exceeds River Inputs as a Source of Nutrients to the Great Barrier Reef”. Environmental Science and Technology, 58 (23). pp. 10409-10410.

Villacorta Rath, Cecilia (2024) Development of two species-specific environmental DNA (eDNA) assays for electric ant (Wasmannia auropunctata) and tropical fire ant (Solenopsis germinata) detection: A report for the Department of Environment, Science and Innovation. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Krause, Johannes R., Lefcheck, Jonathan S., Orth, Robert J., Patrick, Christopher J., Lizcano-Sandoval, Luis, McKenzie, Len J., Reshitnyk, Luba, Manning, Faye, Monteith, Zachary L., Hessing-Lewis, Margot, York, Paul H., Rasheed, Michael A., Carter, Alex, McKenna, Skye, Vaudrey, Jamie M.P., Connolly, Rod M., Fourqurean, James W., and Duffy, Emmett (2024) Diverging trends of coastal ecosystem extent and condition: global seagrass monitoring highlights the need for coordinated data collection at multiple scales. In: ISBW15 & WSC2024 Book of Abstracts. 343. From: ISBW 2024: International Seagrass Biology Workshop, 17-21 June 2024, Naples, Italy.

Ulm, Sean, Mcniven, Ian J., Summerhayes, Glenn R., Wu, Pei-hua, Bunbury, Magdalena M.E., Petchey, Fiona, Hua, Quan, Skelly, Robert, Lambrides, Ariana B.J., Rowe, Cassandra, Lowe, Kelsey M., Reepmeyer, Christian H., Maclaurin, Cailey, Woo, Katherine G.P., Harris, Matthew, Morgan, Sarah B., Turner-Kose, Kayla L., Slater, Sarah A., Connelly, Joshua D., Kneppers, Michael C., Szabó, Katherine, Fairbairn, Andrew, Haberle, Simon G., Hopf, Felicitas, Bultitude, Robert, Ash, Jeremy, Lewis, Stephen E., Beaman, Robin J., Leon, Javier Xavier, McDowell, Matthew C., Potter, Martin, Connelly, Benjamin, Little, Chris, Jackson, Scott, McCarthy, John, Nothdurft, Luke D., Zhao, Jian-xin, Bird, Michael I., Felgate, Matthew W., Cobus, Brian, and Walmbaar Aboriginal Corporation RNTBC (2024) Early Aboriginal pottery production and offshore island occupation on Jiigurru (Lizard Island group), Great Barrier Reef, Australia. Quaternary Science Reviews, 333. 108624.

Kingsford, Michael J., and Wolanski, Eric (2024) The Emergence of Biophysical Sciences for the Great Barrier Reef. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Oceanographic Processes of Coral Reefs. CRC Press, Boca Raton, FL, USA, pp. 3-8.

Lekammudiyanse, Manuja U., Saunders, Megan I., Flint, Nicole, Irving, Andrew, Aiken, Christopher, Clark, Dana E., Berthelsen, Anna, Hindmarsh, Breanna, Hooks, Rachel, Connolly, Rod M., Sievers, Michael, Rasheed, Michael A., Smith, Timonthy M., Glasby, Tim M., Sherman, Craig D.H., and Jackson, Emma L. (2024) Environmental drivers of flowering in the genus Zostera and spatio-temporal variability of Zostera muelleri flowering in Australasia. Aquatic Conservation: marine and freshwater ecosystems, 34 (2). e4068.

Tol, Samantha J., Carter, Alexandra, York, Paul H., Grech, Alana, Situ, Rong, and Coles, Robert G. (2024) Estimates of Wind Drift Coefficient to Inform Biophysical Models of Seagrass Dispersal in the Great Barrier Reef. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Oceanographic Processes of Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, Florida, USA, pp. 184-192.

McDonald, S., Williams, C., and Templeman, S. (2024) Glencore Lady Loretta Mine Receiving Environment Monitoring Program Report 2023-24. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Wolanski, Eric, and Kingsford, Michael J. (2024) Great Barrier Reef Biophysics. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Oceanographic Processes of Coral Reefs. CRC Press, Boca Raton, FL, USA, pp. 438-451.

Waterhouse, Jane, Pearson, Richard, Lewis, Stephen, Davis, Aaron, and Waltham, Nathan (2024) Great Barrier Reef Ecohydrology. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Oceanographic Processes of Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, Florida, USA, pp. 105-125.

Perry, Matthew J., Curic, Mara, Scott, Abigail L., Ritmejeryte, Edita, Rahayu, Dyah U.C., Keller, Paul A., Oelgemöller, Michael, Yeshi, Karma, and Wangchuk, Phurpa (2024) The In Vitro Antioxidant and Anti-Inflammatory Activities of Selected Australian Seagrasses. Life, 14 (6). 710.

Waltham, Nathan J., and Sheaves, Marcus (2024) Investigating thermal regime on seawalls to maximise nature positive outcomes for encrusting tropical oysters. Ecological Engineering, 209. 107426.

Vulliet, Cecile, Koci, Jack, Sheaves, Marcus, and Waltham, Nathan (2024) Linking tidal wetland vegetation mosaics to micro-topography and hydroperiod in a tropical estuary. Marine Environmental Research, 197. 106485.

Garrigue, Claire, Derville, Solene, Bonnerville, Claire, Brisset, Maele, Bustamante, Paco, Cleguer, Christophe, Clua, Eric E.G., Dabin, Willy, Fiat, Sylvie, Justine, Jean-Lou, Machful, Pauline, Mai, Tepoerau, Pilchon, Patrice, Portal, Annie, Sidobre, Christine, Steel, Debbie, Vivier, Jean-Christophe, and Vourey, Elodie (2024) Marine mammal strandings recorded in New Caledonia, South West Pacific Ocean, 1877 to 2022. Pacific Conservation Biology, 30 (1). PC23016.

York, Paul H., Scott, Abigail L., Smith, Timothy M., Davey, Peter A., Carter, Alex B., and Rasheed, Michael A. (2024) Megaherbivory is a major force driving seagrass structure on the Great Barrier Reef. In: ISBW15 & WSC2024 Book of Abstracts. From: ISBW 2024: International Seagrass Biology Workshop, 17-21 June 2024, Naples, Italy.

Duke, Norman C., Canning, Adam D., and Mackenzie, Jock R. (2024) More intense severe tropical cyclones in recent decades cause greater impacts on mangroves bordering Australia’s Great Barrier Reef. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, Florida, USA, pp. 226-253.

McDonald, S., Williams, C., and Templeman, S. (2024) Mt Leyshon Mine Receiving Environment Monitoring Program Report: 1 Nov 2022 to 31 Oct 2023. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Wolanski, Eric, Zeidan, Bakenaz A., and Aly, A.I.M. (2024) The Nile River Basin ecohydrology system: Problems and solutions. In: UNSPECIFIED, (ed.) The Nile River System, Africa: Ecohydrology and Management from Catchment to Coast. Elsevier, Amsterdam, Netherlands, pp. 319-335.

Wirth, Wytamma, Schwarzkopf, Lin, Schaffer, Jason, and Ariel, Ellen (2024) No Ranaviral DNA Found in Australian Freshwater Turtles, 2014–19, Despite Previous Serologic Evidence. Journal of Wildlife Diseases, 60 (3). pp. 683-690.

Wolanski, Eric, and Kingsford, Michael J. (2024) Oceanographic Processes of Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, FL, USA.

Wolanski, Eric, Kingsford, Michael J., Lambrechts, Jonathan, and Marmorino, George (2024) The Physical Oceanography of the Great Barrier Reef:. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Oceanographic Processes of Coral Reefs. CRC Press, Boca Raton, FL, USA, pp. 9-34.

Hernandez, Stephanie, Duce, Stephanie, Sheaves, Marcus, Murray, Nicholas, and Adams, Vanessa M. (2024) Predicting the impacts of clearing on vegetation communities: a model-based approach for identifying conservation priorities in Queensland, Australia. Australasian Journal of Environmental Management, 31 (1). pp. 40-63.

Templeman, Michelle, and McDonald, Sarah (2024) Question 5.2 What are the primary sources of pesticides that have been found in Great Barrier Reef ecosystems and what are the key factors that influence pesticide delivery from source to ecosystem? [in 2022 Scientific Consensus Statement on land-based impacts on Great Barrier Reef water quality and ecosystem condition]. Report Section. Commonwealth of Australia and Queensland Government.

Williams, C., Ballantyne, S., McDonald, S., and Templeman, S. (2024) Ravenswood Gold Receiving Environment Monitoring Program: 1 Aug 2022 to 31 Jul 2023. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Murdiyarso, Daniel, Swails, Erin, Hergoualc’h, Kristell, Bhomia, Rupesh, and Sasmito, Sigit D. (2024) Refining greenhouse gas emission factors for Indonesian peatlands and mangroves to meet ambitious climate targets. Proceedings of the National Academy of Sciences of the United States of America, 121 (17). e2307219121.

Ceccarelli, Daniela M., Logan, Murray, Evans, Richard D., Jones, Geoffrey P., Puotinen, Marji, Petus, Caroline, Russ, Garry R., Sinclair-Taylor, Tane, Srinivasan, Maya, and Williamson, David H. (2024) Regional-scale disturbances drive long-term decline of inshore coral reef fish assemblages in the Great Barrier Reef Marine Park. Global Change Biology, 30 (10). 17506.

Carter, A., McKenna, S., Rasheed, M.A., Taylor, H., van de Wetering, C., Chartrand, K., Reason, C., Collier, C., Shepherd, L., Mellors, J., McKenzie, L., Duke, N.C., Roelofs, A., Smit, N., Groom, R., Barrett, D., Evans, S., Pitcher, R., Murphy, N., Carlisle, M., David, M., Lui, S., Torres Strait Indigenous Rangers, and Coles, R.G. (2024) Seagrass spatial data synthesis from north-east Australia, Torres Strait and Gulf of Carpentaria, 1983 to 2022. Limnology and Oceanography Letters, 9 (1). pp. 7-22.

Lewis, Stephen, McCloskey, Gillian, Bainbridge, Zoe, Davis, Aaron, Bartley, Rebecca, and Turner, Ryan (2024) Sediment and nutrient flux from land. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Oceanographic Processes of Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, FL, USA, pp. 126-142.

Cartwright, P.J., Iles, J.A., and Waltham, N.J. (2024) Southern Mackay Ambient Marine Water Quality Monitoring Program: Annual Report 2022-2023. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Hobbs, Jean-Paul A., and Srinivasan, Maya (2024) Structure of Reef Fish Families (Butterflyfishes and Angelfishes) at Isolated Oceanic Reefs in the Indian Ocean: Christmas Island and the Cocos (Keeling) Islands. Diversity, 16 (9). 569.

Cleguer, Christophe, Garrigue, Claire, Fuentes, Mariana M.P.B., Hamann, Mark, Payri, Claude, and Marsh, Helene (2024) Temporal changes in habitat use by dugongs in a spatially restricted coral reef environment. Pacific Conservation Biology, 30 (2). PC23036.

Bainbridge, Zoe T., Olley, Jon M., Lewis, Stephen E., Stevens, Tom, and Smithers, Scott G. (2024) Tracing sources of inorganic suspended particulate matter in the Great Barrier Reef lagoon, Australia. Scientific Reports, 14. 15651.

Ram, Mark, Sheaves, Marcus, and Waltham, Nathan J. (2024) Tracking the long-term vegetation and soil characteristics of restored mangroves: a case study from Guyana's coast. Restoration Ecology, 32 (5). e14170.

Yu, Wusheng, Guo, Rong, Thompson, Lonnie, Zhang, Jinyi, Lewis, Stephen, Jing, Zhaowei, He, Junmei, Ma, Yaoming, Xu, Balquing, Wu, Guangjian, Tang, Wenjun, Wang, Wenjun, Ren, Pengjie, Zhang, Zhuaxia, and Qu, Dongmei (2024) Water isotope ratios reflect convection intensity rather than rain type proportions in the pan-tropics. Science Advances, 10 (33). eado3258.

Sheaves, M., Mattone, C., Barnett, A., Abrantes, K., Bradley, M., Sheaves, A., Sheaves, J., and Waltham, N.J. (2024) Whale sharks as oceanic nurseries for Golden Trevally. Pacific Conservation Biology, 30 (1). PC23004.

Wolanski, Eric (2024) The White Nile River developing water crisis. In: Zeidan, Bakenaz A., and Aly, Aly Islam Metwally, (eds.) The Nile River System, Africa: Ecohydrology and Management from Catchment to Coast. Ecohydrology from Catchment to Coast, 2 . Elsevier, pp. 103-132.

Cartwright, P.J., Iles, J.A., Johns, J., and Waltham, N.J. (2024) Whitsunday water quality monitoring blueprint for tourism operators: Annual report 2023–2024. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Bradley, Michael, Dubuc, Alexia, Piggott, Camilla V.H., Sambrook, Katie, Hoey, Andrew S., Depczynski, Martial, Langlois, Tim J., Gagliano, Monica, Wilson, Shaun K., Cure, Katherine, Holmes, Thomas H., Moore, Glenn I., Travers, Michael, Baker, Ronald, Nagelkerken, Ivan, and Sheaves, Marcus (2024) The fish–mangrove link is context dependent: Tidal regime and reef proximity determine the ecological role of tropical mangroves. Fish and Fisheries, 25 (3). pp. 523-541.

Losciale, Riccardo, Day, Jon C., Rasheed, Michael A., and Heron, Scott F. (2024) The vulnerability of World Heritage seagrass habitats to climate change. Global Change Biology, 30 (1). e17113.

Haydon, Trent D., Matthews, Jennifer L., Seymour, Justin R., Raina, Jean-Baptiste, Seymour, Jamie E., Chartrand, Kathryn, Camp, Emma F., and Suggett, David J. (2023) Metabolomic signatures of corals thriving across extreme reef habitats reveal strategies of heat stress tolerance. Proceedings of the Royal Society of London Series B, Biological Sciences, 290 (1992). 20221877.

Cleguer, Christophe, Hamel, Melanie, Rankin, Robert, Genson, Allyson, Edwards, Chloe, Collins, Kym, Crowe, Michael, Choukroun, Severine, and Marsh, Helene (2023) 2022 Dugong Aerial Survey: Mission Beach to Moreton Bay. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Archer, R., Talbot, L., Marshall, C., Hunter, C., Muir, B., Forester, T., Wren, L, Bedford, K., Johnson, M., Singleton, G., Singleton, B., Smith, T., Chartrand, K., Wright, J., and Hedge, P. (2023) AMSA Conference Indigenous Workshop Summary. Report. National Environmental Science Program, Cairns, QLD, Australia.

Harrison, H.B., Drane, L., Cresswell, B.J., Evans, R.D., Galbraith, G.F., Srinivasan, M., Taylor, B.M., Williamson, D.H., and Jones, G.P. (2023) Ageing of juvenile coral grouper (Plectropomus maculatus) reveals year-round spawning and recruitment: implications for seasonal closures. Proceedings of the Royal Society of London Series B, Biological Sciences, 290. 20230584.

Moy, Karl, Schaffer, Jason, Hammer, Michael P., Attard, Catherine R.M., Beheregaray, Luciano, Duncan, Richard, Lintermans, Mark, Brown, Culum, and Unmack, Peter (2023) Alternative conservation outcomes from aquatic fauna translocations: Losing and saving the Running River rainbowfish. Aquatic Conservation: marine and freshwater ecosystems, 33 (12). pp. 1445-1459.

York, P.H., van de Wetering, C., Reason, C.L., and Rasheed, M.A. (2023) Annual Seagrass Monitoring in the Mackay – Hay Point Region - 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Glanville, K., Perry, J., Ryan, T., Ronan, M., and Zivec, P. (2023) Applying a versatile, comprehensive, attribute-based waterhole classification scheme to ecosystem-based management challenges. Wildlife Research, 50 (12). pp. 1085-1096.

Albright, Rebecca, Hansson, Lina, Cooley, Sarah, Gattuso, Jean-Pierre, Marshall, Paul, Marshall, Nadine, Fletcher, Stephen, Haraldsson, Gunnar, and Hoegh-Guldberg, Ove (2023) Are we ready for ocean acidification? A framework for assessing and advancing policy readiness. Environmental Research Letters, 18. 041001.

Ulm, Sean, O'Grady, Damien, Petchey, Fiona, Hua, Quan, Jacobsen, Geraldine, Linnenlucke, Lauren, David, Bruno, Rosendahl, Daniel, Bunbury, Magdalena M.E., Bird, Michael I., and Reimer, Paula J. (2023) Australian marine radiocarbon reservoir effects: ΔR atlas and ΔR calculator for Australian mainland coasts and near-shore islands. Radiocarbon, 65 (5). pp. 1139-1159.

Tol, S.J., Coles, R.G., Shepherd, L., Scott, A., Hoffmann, L., Leeson, P., Ekins, M, Clarke, M., Rasheed, M.A., and York, P. (2023) Benthic Habitat Mapping in the Central Coral Sea Marine Park: Preliminary voyage report for December 2022 survey. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

De Brauwer, Maarten, Clarke, Laurence J., Chariton, Anthony, Cooper, Madalyn K., De Bruyn, Mark, Furlan, Elise, Macdonald, Anna J., Rourke, Meaghan L., Sherman, Craig D.H., Suter, Leonie, Villacorta Rath, Cecilia, Zaiko, Anastasija, and Trujillo-González, Alejandro (2023) Best practice guidelines for environmental DNA biomonitoring in Australia and New Zealand. Environmental DNA, 5 (3). pp. 417-423.

Waltham, Nathan, Lovelock, Catherine, and Buelow, Christina (2023) Blue carbon stocks and cycling in tropical tidal marshes facing grazing pressure. Marine Ecology Progress Series, 717. pp. 1-16.

Tanabe, Lyndsey K., Cochran, Jesse E.M., Williams, Colin T., Garzon, Francesco, Langner, Ute, Hardenstine, Royale S., Hawkes, Lucy A., Brainard, Russell E., Eweida, Ameer A., Marshall, Paul A., and Berumen, Michael L. (2023) Case report: tracking data from foraging hawksbill turtles in the northern Red Sea. Animal Biotelemetry, 11. 1.

Santoro, Anthony, Chambers, Jane M., Ebner, Brendan, and Beatty, Stephen J. (2023) Climate change affects the early-life history of a freshwater turtle in a severely drying region. Austral Ecology, 48 (8). pp. 2205-2229.

de la Fuente Pinero, Alejandro, and Williams, Stephen E. (2023) Climate change threatens the future of rain forest ringtail possums by 2050. Diversity and Distributions, 29 (1). pp. 173-183.

Canning, Adam D., Smart, James C.R., Dyke, Joshua, Curwen, Graeme, Hasan, Syezlin, and Waltham, Nathan J. (2023) Constructed Wetlands Suitability for Sugarcane Profitability, Freshwater Biodiversity and Ecosystem Services. Environmental Management, 71. pp. 304-320.

Zhang, Jingyi, Yu, Wusheng, Lewis, Stephen, Thompson, Lonnie G, Bowen, Gabriel J, Yoshimura, Kei, Werner, Martin, Chakraborty, Supriyo, Jing, Zhaowei, Ma, Yaoming, Guo, Xiaoyu, Xu, Baiqing, Wu, Guangjian, Guo, Rong, Qu, Dongmei, and Cauquoin, Alexandre (2023) Controls on Stable Water Isotopes in Monsoonal Precipitation Across the Bay of Bengal: Atmosphere and Surface Analysis. Geophysical Research Letters, 50 (5). e2022GL102229.

McGowan, Alexandra M., Lanyon, Janet M., Clark, Nicholas, Blair, David, Marsh, Helene, Wolanski, Eric, and Seddon, Jennifer M. (2023) Cryptic marine barriers to gene flow in a vulnerable coastal species, the dugong (Dugong dugon). Marine Mammal Science, 39 (3). pp. 918-939.

Douglas, Sophia R.L., Tebbett, Sterling B., Choukroun, Severine, Goatley, Christopher H.R., and Bellwood, David R. (2023) Depth stratified light trap sampling reveals variation in the depth distribution of late-stage cryptobenthic reef fish larvae. Coral Reefs, 42 (2). pp. 507-512.

Li, Yao, Yu, Wusheng, Tian, Lide, Lewis, Stephen, Yoshimura, Kei, Weng, Cheng, Cui, Jiangpeng, Ma, Yaoming, Guo, Rong, Zhang, Jingyi, Jing, Zhaowei, Shao, Lili, Guo, Ziaoyu, and Wang, Yong (2023) Diagnosis of atmospheric circulation shifts in the central Tibetan Plateau: Evidence from stable isotopes. Atmospheric Research, 282. 106536.

Silburn, D. Mark, Fillols, Emilie, Rojas-Ponce, Samuel, Lewis, Steve, and McHugh, A.D. (2023) Direct comparison of runoff of residual and knockdown herbicides in sugarcane using a rainfall simulator finds large difference in runoff losses and toxicity relative to diuron. Science of the Total Environment, 863. 160976.

Canning, A.D., and Death, R.G. (2023) Establishing riverine nutrient criteria using individual taxa thresholds. Water Research, 246. 120731.

Burrows, Ryan M., Garzon-Garcia, Alexandra, Burton, Joanne, Lewis, Stephen E., Gruber, Renee K., Brodie, Jon E., and Burford, Michele A. (2023) Factors affecting broadscale variation in nearshore water-column organic carbon concentrations along the Great Barrier Reef. Regional Studies in Marine Science, 63. 103032.

Godinez-Espinosa, Sara, Raoult, Vincent, Smith, Timothy M., Gaston, Troy F., and Williamson, Jane E. (2023) Functional roles of coral reef primary producers examined with stable isotopes. Marine and Freshwater Research, 74 (7). pp. 601-613.

Chung, Christine T.Y., Hope, Pandora, Hutley, Lindsay B., Brown, Josephine, and Duke, Norman C. (2023) Future climate change will increase risk to mangrove health in Northern Australia. Communications Earth & Environment, 4. 192.

Lau, Sally C. Y., Wilson, Nerida G., Golledge, Nicholas R., Naish, Tim R., Watts, Phillip C., Silva, Catarina N. S., Cooke, Ira R., Allcock, A. Louise, Mark, Felix C., Linse, Katrin, and Strugnell, Jan M. (2023) Genomic evidence for West Antarctic Ice Sheet collapse during the Last Interglacial. Science, 382. pp. 1384-1389.

Williams, C., Templeman, S., and McDonald, S. (2023) Glencore Lady Loretta Mine EPML00982013, Assessment of Receiving Environment Outcomes from Containment Dam Releases in March 2023. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

McDonald, S., Williams, C., and Templeman, S. (2023) Glencore Lady Loretta Mine Receiving Environment Monitoring Program Report 2022-23. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Risandi, Johan, Rifai, Husen, Lukman, Kevin M., Sondak, Calvyn F.A., Hernawan, Udhi E., Quevedo, Jay Mar D., Hidayat, Rahman, Ambo-Rappe, Rohani, Lanuru, Mahatma, McKenzie, Len, Kohsaka, Ryo, and Nadaoka, Kazuo (2023) Hydrodynamics across seagrass meadows and its impacts on Indonesian coastal ecosystems: A review. Frontiers in Earth Science, 11. 1034827.

Oubelkheir, Kadija, Ford, Phillip W., Cherukuru, Nagur, Clementson, Lesley A., Petus, Caroline, Devlin, Michelle, Schroeder, Thomas, and Steven, Andrew D.L. (2023) Impact of a Tropical Cyclone on Terrestrial Inputs and Bio-Optical Properties in Princess Charlotte Bay (Great Barrier Reef Lagoon). Remote Sensing, 15 (3). 652.

Buñuel, Xavier, Alcoverro, Teresa, Boada, Jordi, Zinkunegi, Leire, Smith, Timothy M., Barrera, Anaïs, Casas, Marc, Farina, Simone, Pérez, Marta, Romero, Javier, Arthur, Rohan, and Pagès, Jordi F. (2023) Indirect grazing-induced mechanisms contribute to the resilience of Mediterranean seagrass meadows to sea urchin herbivory. Oikos, 2023 (6). e09520.

Smith, Adam K., Cook, Nathan, Grundy, Allen, Lück, Michael, Pert, Petina L., Picken, Felicity, and Stacey, Joanne (2023) Innovative local response to cyclone damaged reef leads to rapid tourism recovery. Journal of Ecotourism, 22 (3). pp. 354-374.

Lear, Karissa O., Ebner, Brendan C., Fazeldean, Travis, Whitty, Jeff, and Morgan, David L. (2023) Inter-decadal variation in diadromous and potamodromous fish assemblages in a near pristine tropical dryland river. Ecology of Freshwater Fish, 32 (2). pp. 444-463.

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York, Paul, and Rasheed, Michael (2021) Annual Seagrass Monitoring in the Mackay-Hay Point Region – 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

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Reason, C.L., McKenna, S.A., and York, P.H. (2021) Cairns - Marine Plant Assessment for Smith's Creek and Wharf 8 potential Port Infrastructure Sites - June 2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

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Lambert, Victoria, Bainbridge, Zoe T., Collier, Catherine, Lewis, Stephen E., Adams, Matthew P., Carter, Alex, Saunders, Megan I., Brodie, Jon, Turner, Ryan D.R., Rasheed, Michael A., and O'Brien, Katherine R. (2021) Connecting targets for catchment sediment loads to ecological outcomes for seagrass using multiple lines of evidence. Marine Pollution Bulletin, 169. 112494.

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Zhang, Jingyi, Yu, Wusheng, Jing, Zhaowei, Lewis, Stephen, Xu, Baiqing, Ma, Yaoming, Wei, Feili, Luo, Lun, and Qu, Dongmei (2021) Coupled effects of moisture transport pathway and convection on stable isotopes in precipitation across the East Asian Monsoon Region: implications for paleoclimate reconstruction. Journal of Climate, 34 (24). pp. 9811-9822.

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Duarte de Paula Costa, Micheli, Lovelock, Catherine E., Waltham, Nathan J., Young, Mary, Adame, Maria F., Bryant, Catherine V., Butler, Don, Green, David, Rasheed, Michael A., Salinas, Cristian, Serrano, Oscar, York, Paul H., Whitt, Ashley A., and Macreadie, Peter I. (2021) Current and future carbon stocks in coastal wetlands within the Great Barrier Reef catchments. Global Change Biology, 27 (14). pp. 3257-3271.

Armitage, Chris, Auld, Tony, Bradbury, Keith, Campbell, Heather, Clarkson, Bruce, Cox, Andrew, Dixon, Peter, Fitzsimons, James, Foran, Brendan, Howling, Gary, McLeod, Ian, Norrish, Shane, O'Connor, Patrick, O'Gorman, Dermot, Slater, Helen, and Wrigley, Damian (2021) The Darwin Agreement: a collaboration between Australian restoration organisations in support of the UN Decade on Ecosystem Restoration. Ecological Management and Restoration, 22 (3). pp. 220-222.

Adame, Maria, Waltham, Nathan, Iram, Naima, Farahani, Bahareh Shahrabi, Salinas, Cristian, Buford, Michelle, and Ronan, Mike (2021) Denitrification within the sediments and epiphyton of tropical macrophyte stands. Inland Waters, 11. 3. pp. 257-266.

Hewitt, Daniel E., Taylor, Matthew D., Raoult, Vincent, Smith, Timothy M., and Gaston, Troy (2021) Diet-tissue discrimination and turnover of δ 13 C and δ 15 N in muscle tissue of a penaeid prawn. Rapid Communications in Mass Spectrometry, 35 (19). e9167.

Ebner, Brendan C., Donaldson, James A., Marshall, Jonathan, Starrs, Danswell, and Freeman, Alastair B. (2021) Diving beetles strip eel to the bone. Food Webs, 27. e00188.

Godfrey, Paul C., Pearson, Richard G., Pusey, Bradley J., and Arthington, Angela H. (2021) Drivers of zooplankton dynamics in a small tropical lowland river. Marine and Freshwater Research, 72 (2). MF20067. pp. 173-185.

Espinoza-rodriguez, Ninive, Pernia, Yumara, Severeyn, Hector, Garcia de Severeyn, Yajaira, and Barrios-Garrido, Hector (2021) Echinoderms from the Gulf of Venezuela, north-western coast of Venezuela. Papéis Avulsos de Zoologia, 61. e20216151.

Sheaves, Marcus, Mattone, Carlo, Connolly, Rod M., Hernandez, Stephanie, Nagelkerken, Ivan, Murray, Nicholas, Ronan, Michael, Waltham, Nathan John, and Bradley, Michael (2021) Ecological constraint mapping: understanding uutcome-limiting bottlenecks for improved environmental decision-making in marine and coastal environments. Frontiers in Marine Science, 8. 717448.

Canning, Adam D., and Waltham, Nathan J. (2021) Ecological impact assessment of climate change and habitat loss on wetland vertebrate assemblages of the Great Barrier Reef catchment and the influence of survey bias. Ecology and Evolution, 11 (10). pp. 5244-5254.

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McDonald, Sarah, Hassell, Kathryn, and Cresswell, Tom (2021) Effect of short-term dietary exposure on metal assimilation and metallothionein induction in the estuarine fish Pseudogobius sp. Science of the Total Environment, 772. 145042.

Fillols, E.F., and Davis, A. (2021) Effect of the soil-binding adjuvant Grounded® on herbicide efficacy and runoff losses in bare soil in ratoons. In: Proceedings of the Australian Society of Sugar Cane Technologists (42) pp. 555-562. From: 42nd Australian Society of Sugar Cane Technologists Conference, 20-23 April 2021, Bundaberg, QLD, Australia.

Boyero, Luz, López-Rojo, Naiara, Pérez, Javier, Tonin, Alan M., Correa-Araneda, Francisco, Davis, Aaron, and Pearson, Richard G. (2021) Effects of gamma irradiation on instream leaf litter decomposition. Hydrobiologia, 848 (21). pp. 5223-5232.

Villacorta Rath, Cecilia, and Burrows, Damien (2021) Environmental DNA survey in areas of the Kimberley region at risk of invasion by cane toads. Report. National Environmental Science Programme (NESP), Townsville, QLD, Australia.

Chilton, Daniel, Hamilton, David P., Nagelkerken, Ivan, Cook, Perran, Hipsey, Matthew R., Reid, Robert, Sheaves, Marcus, Waltham, Nathan J., and Brookes, Justin (2021) Environmental flow requirements of estuaries: providing resilience to current and future climate and direct anthropogenic changes. Frontiers in Environmental Science, 9. 764218.

Smith, Adam, Cook, Nathan, Cook, Kailash, Brown, Rachelle, Woodgett, Richard, Veron, John, and Saylor, Vicki (2021) Field measurements of a massive Porites coral at Goolboodi (Orpheus Island), Great Barrier Reef. Scientific Reports, 11 (1). 15334.

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Dunstan, Laura, Pulman, Lisa, Waltham, Nathan, and Sargent, Sue (2021) Finding the sweet spot: Can social marketing encourage cane farmers to change practices for water quality outcomes in the Great Barrier Reef Catchment? In: Hay, Rachel, Eagle, Lynne, and Bhati, Abhishek, (eds.) Broadening Cultural Horizons in Social Marketing: comparing case studies from Asia-Pacific. Springer, Singapore, pp. 29-46.

Espinoza-rodriguez, Ninive, and Barrios-Garrido, Hector (2021) First report of a Humpback Whale Megaptera novaeangliae (Borowski, 1781) (Cetartiodactyla: Balaenopteridae) stranding in the Gulf of Venezuela. Ecotropicos, 33. pp. 1-7.

Pearson, Richard G., Connolly, Niall M., Davis, Aaron M., and Brodie, Jon E. (2021) Fresh waters and estuaries of the Great Barrier Reef catchment: effects and management of anthropogenic disturbance on biodiversity, ecology and connectivity. Marine Pollution Bulletin, 166. 112194.

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Fielke, Simon J., Taylor, Bruce M., Jakku, Emma, Mooij, Martijn, Stitzlein, Cara, Fleming, Aysha, Thorburn, Peter J., Webster, Anthony J., Davis, Aaron, and Vilas, Maria P. (2021) Grasping at digitalisation: turning imagination into fact in the sugarcane farming community. Sustainability Science, 16. pp. 677-690.

Barrios-Garrido, Hector, De Turris-Morales, Kareen, and Espinoza-Rodriguez, Ninive Edilia (2021) Guiana Dolphin (Sotalia guianensis) in the Maracaibo Lake System, Venezuela: conservation, threats, and population overview. Frontiers in Marine Science, 7. 594021.

York, Paul H., and McKenna, Skye A. (2021) Half Tide Tug Harbour, Hay Point Marine Plant Assessment – September 2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Thiault, Lauric, Jupiter, Stacy, Johnson, Johanna E., Cinner, Joshua E., Jarvis, Rebecca M., Heron, Scott F., Maina, Joseph M., Marshall, Nadine A., Marshall, Paul A., and Claudet, Joachim (2021) Harnessing the potential of vulnerability assessments for managing social-ecological systems. Ecology and Society, 26 (2). 1.

York, Paul, Van de Wetering, Chris, and Rasheed, M.A. (2021) Hay Point Coal Terminal Marine macrophyte assessment for potential mooring sites – October 2020. Report. TropWATER, Cairns, QLD, Australia.

Scott, Abigail L., York, Paul H., and Rasheed, Michael A. (2021) Herbivory has a major influence on structure and condition of a Great Barrier Reef subtropical seagrass meadow. Estuaries and Coasts, 44. pp. 506-521.

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Cooper, Madalyn K., Huerlimann, Roger, Edmunds, Richard C., Budd, Alyssa M., Le Port, Agnes, Kyne, Peter M., Jerry, Dean R., and Simpfendorfer, Colin A. (2021) Improved detection sensitivity using an optimal eDNA preservation and extraction workflow and its application to threatened sawfishes. Aquatic Conservation: marine and freshwater ecosystems, 31 (8). pp. 2131-2148.

Abhik, Santra, Hope, Pandora, Hendon, Harry H., Hutley, Lindsay B., Johnson, Stephanie, Drosdowsky, Wasyl, Brown, Josephine R, and Duke, Norman C. (2021) Influence of the 2015–2016 El Niño on the record‑breaking mangrove dieback along northern Australia coast. Scientific Reports, 11. 20411.

Jing, Zhaowei, Yu, Wusheng, Schneider, Andreas, Borsdorff, Tobias, Landgraf, Jochen, Lewis, Stephen, Zhang, Jingyi, Tang, Wenjun, Ma, Yaoming, Xu, Baiqing, and Qu, Dongmei (2021) Interannual variation in stable isotopes in water vapor over the Northern Tibetan Plateau Linked to ENSO. Geophysical Research Letters, 48 (8). e2021GL092708.

Lewis, Stephen E., Bartley, Rebecca, Wilkinson, Scott, Bainbridge, Zoe T., Kinsey-Henderson, Anne, James, Cassandra S., Irvine, Scott A., and Brodie, Jon E. (2021) Land use change in the river basins of the Great Barrier Reef, 1860 to 2019: a foundation for understanding environmental history across the catchment to reef continuum. Marine Pollution Bulletin, 166. p. 112193.

Waltham, Nathan J., Wegscheidl, Carla, Volders, Adrian, Smart, James C.R., Hasan, Syezlin, Ledee, Elodie, and Waterhouse, Jane (2021) Land use conversion to improve water quality in high DIN risk, low-lying sugarcane areas of the Great Barrier Reef catchments. Marine Pollution Bulletin, 167. 112373.

Boyero, Luz, Pérez, Javier, López-Rojo, Naiara, Tonin, Alan M., Correa-Araneda, Francisco, Pearson, Richard G., Bosch, Jaime, Albariño, Ricardo J., Anbalagan, Sankarappan, Barmuta, Leon A., Beesley, Leah, Burdon, Francis J., Caliman, Adriano, Callisto, Marcos, Campbell, Ian C., Cardinale, Bradley J., Jesús Casas, J., Chará-Serna, Ana M., Ciapała, Szymon, Chauvet, Eric, Colón-Gaud, Checo, Cornejo, Aydeé, Davis, Aaron M., Degebrodt, Monika, Dias, Emerson S., Díaz, María E., Douglas, Michael M., Elosegi, Arturo, Encalada, Andrea C., De Eyto, Elvira, Figueroa, Ricardo, Flecker, Alexander S., Fleituch, Tadeusz, Frainer, André, França, Juliana S., García, Erica A., García, Gabriela, García, Pavel, Gessner, Mark O., Giller, Paul S., Gómez, Jesús E., Gómez, Sergio, Gonçalves, Jose F., Graça, Manuel A.S., Hall, Robert O., Hamada, Neusa, Hepp, Luiz U., Hui, Cang, Imazawa, Daichi, Iwata, Tomoya, Junior, Edson S.A., Kariuki, Samuel, Landeira-Dabarca, Andrea, Leal, María, Lehosmaa, Kaisa, M’Erimba, Charles, Marchant, Richard, Martins, Renato T., Masese, Frank O., Camden, Megan, McKie, Brendan G., Medeiros, Adriana O., Middleton, Jen A., Muotka, Timo, Negishi, Junjiro N., Pozo, Jesús, Ramírez, Alonso, Rezende, Renan S., Richardson, John S., Rincón, José, Rubio-Ríos, Juan, Serrano, Claudia, Shaffer, Angela R., Sheldon, Fran, Swan, Christopher M., Tenkiano, Nathalie S.D., Tiegs, Scott D., Tolod, Janine R., Vernasky, Michael, Watson, Anne, Yegon, Mourine J., and Yule, Catherine M. (2021) Latitude dictates plant diversity effects on instream decomposition. Science Advances, 7 (13). eabe7860.

Rojas-Cañizales, Daniela, Espinoza-rodriguez, Ninive, Rodriguez, Maria A., Palmar, Jordano, Montiel-villalobos, María, Wildermann, Natalie, and Barrios-Garrido, Hector (2021) Leatherback turtles (Dermochelys coriacea) in the Gulf of Venezuela: an updated stranding assessment 2001-2014. Marine & Fishery Sciences, 34 (1). pp. 113-119.

Mejias-Balsalobre, Carmen, Restrepo, Jamie, Borges, Gilberto, Garcia, Raul, Rojas-Cañizales, Daniela, Barrios-Garrido, Hector, and Valverde, Roldan A. (2021) Local community perceptions of sea turtle egg use in Tortuguero, Costa Rica. Ocean & Coastal Management, 201. 105423.

Villacorta-Rath, Cecilia, Hoskin, Conrad J., Strugnell, Jan M., and Burrows, Damien (2021) Long distance (>20 km) downstream detection of endangered stream frogs suggests an important role for eDNA in surveying for remnant amphibian populations. PeerJ, 9. e12013.

van de Wetering, C., Carter, A.B., and Rasheed, M.A. (2021) Mackay-Whitsunday-Isaac Seagrass Monitoring 2017-2020: marine inshore south zone. Report. James Cook University, Cairns, QLD, Australia.

Elisa, Manase, Kihwele, Emilian, Wolanski, Eric, and Birkett, Charon (2021) Managing wetlands to solve the water crisis in the Katuma River ecosystem, Tanzania. Ecohydrology and Hydrobiology, 21 (2). pp. 211-222.

Hein, Margaux, Staub, francis, Banaszack, Anastazia, Dallison, Thomas, Deri, Wilfrid, Grimsditch, Gabriel, Jacob, Florina, Loder, Jennifer, McLeod, Ian, Mead, David, Moore, Tom, Newlands, Maxine, Shaver, Elizabeth, Thornton, Hazel, Vardi, Tali, Winters, R. Scott, and Zoccola, Didier (2021) Mapping the global funding landscape for coral reef restoration. External Commissioned Report. International Coral Reef Initiative.

McKenzie, L.J., Collier, C.J., Langlois, L.A., Yoshida, R.L., Uusitalo, J., and Waycott, M. (2021) Marine Monitoring Program: Annual Report for Inshore Seagrass Monitoring 2019–20. Report. Great Barrier Reef Marine Park Authority, Townsville.

Bainbridge, Zoe, Lewis, Stephen, Stevens, Thomas, Petus, Caroline, Lazarus, Emily, Gorman, Jessica, and Smithers, Scott (2021) Measuring sediment grain size across the catchment to reef continuum: improved methods and environmental insights. Marine Pollution Bulletin, 168. 112339.

Gouezo, Marine, Wolanski, Eric, Critchell, Kay, Fabricius, Katharina, Harrison, Peter, Golbuu, Yimnang, and Doropoulos, Christopher (2021) Modelled larval supply predicts coral population recovery potential following disturbance. Marine Ecology - Progress Series, 661. pp. 127-145.

Duarte de Paula Costa, Micheli, Lovelock, Catherine E., Waltham, Nathan C., Moritsch, Monica, Butler, Don, Power, Trent, Thomas, Evan, and Macreadie, Peter I. (2021) Modelling blue carbon farming opportunities at different spatial scales. Journal of Environmental Management, 301. 113813.

Karim, Fazlul, Wallace, Jim, Abbott, Brett, Nicholas, Mike, and Waltham, Nathan J. (2021) Modelling the removal of an earth bund to maximise seawater ingress into a coastal wetland. Estuarine, Coastal and Shelf Science, 263. 107626.

Lewis, S., and Bainbridge, Z. (2021) Much more than just sediments: The importance of sediment composition for Great Barrier Reef ecosystems. Report. Reef and Rainforest Research Centre, James Cook University, Cairns, QLD, Australia.

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Morgan, David L., Lear, Karissa O., Ebner, Brendan C., and Beatty, Stephen J. (2021) Net design for selective control of the “plague minnow” Gambusia holbrooki that minimises impact on native Australian fishes. Journal of Fish Biology, 99 (6). pp. 2060-2065.

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Waltham, N., Iles, J.A., and Johns, J. (2021) Port of Abbot Point Ambient Marine Water Quality Monitoring Program: Annual Report 2020-2021: A Report for North Queensland Bulk Ports Corporation. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

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Smith, T.M., and Rasheed, M.A. (2021) Port of Bundaberg Seagrass and Benthic Monitoring Survey 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Smith, T.M., and Rasheed, M.A. (2021) Port of Bundaberg Spoil Ground Seagrass and Benthic Fauna Survey 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Scott, A.L., and Rasheed, M.A. (2021) Port of Karumba Long-term Annual Seagrass Monitoring 2020. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

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McKenna, Skye A. (2021) Port of Townsville Temporary Offloading Facility Seagrass Assessment May 2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

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Baker, Ronald, and Sheaves, Marcus (2021) Predation in littoral habitats is a complex process: Comment on Whitfield (2020). Marine Ecology - Progress Series, 662. pp. 205-208.

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Chartrand, K.M., and Carter, A.B. (2021) Reef Restoration Foundation Fitzroy Island Coral Habitat Assessment: June 2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, A.B., Kish, H., and Chartrand, K. (2021) Reef Restoration Foundation Fitzroy Island Coral Nursery Monitoring: methods and results April - October 2020. Report. James Cook University, Cairns, QLD, Australia.

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Scott, A.L, and Rasheed, M.A. (2021) Seagrass Habitat in the Port of Thursday Island: Annual Monitoring Report 2021. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

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Reason, C.L., Smith, T.M., and Rasheed, M.A. (2021) Seagrass habitat of Cairns Harbour and Trinity Inlet: Cairns Shipping Development Program and Annual Monitoring Report 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Reason, C.L., York, P.H., and Rasheed, M.A. (2021) Seagrass habitat of Mourilyan Harbour: Annual Monitoring Report – 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Jarvis, Jessie C., McKenna, Skye A., and Rasheed, Michael A. (2021) Seagrass seed bank spatial structure and function following a large-scale decline. Marine Ecology Progress Series, 665. pp. 75-87.

Smith, T.M., Reason, C., McKenna, S., and Rasheed, M.A. (2021) Seagrasses in Port Curtis and Rodds Bay 2020 Annual long‐term monitoring. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Nourdi, Njutapvoui F., Raphael, Onguene, Grégoire, Abessolo O., Jean Paul, Rudant, Sakaros, Bogning, Thomas, Stieglitz, and Minette, Tomedi E. (2021) Seasonal to decadal scale shoreline changes along the Cameroonian coastline, Bay of Bonny (1986 to 2020). Regional Studies in Marine Science, 45. 101798.

Joy, M.K., and Canning, A.D. (2021) Shifting baselines and political expediency in New Zealand's freshwater management. Marine and Freshwater Research, 72. pp. 456-461.

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Fillois, E.F., and Davis, A.M. (2021) Soil-binding adjuvants can reduce herbicide loss via runoff. In: Proceedings of the Australian Society of Sugar Cane Technologists. pp. 433-443. From: ASSCT 2020: 42nd Annual Conference of the Australian Society of Sugar Cane Technologists, 20-23 April 2021, Bundaberg, QLD, Australia.

Waltham, N.J., and Iles, J.A. (2021) Southern Mackay Ambient Marine Water Quality Monitoring Program: Annual report 2020-2021. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

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Scott, Abigail L., York, Paul H., Macreadie, Peter I., and Rasheed, Michael A. (2021) Spatial and temporal variability of green turtle and dugong herbivory in seagrass meadows of the southern Great Barrier Reef (GBR). Marine Ecology Progress Series, 667. pp. 225-231.

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Carter, Alexandra, Wilkinson, Juliette, David, Madeina, and Lukac, Micaela (2021) Torres Strait Eastern Cluster: intertidal seagrass baseline survey. Report. James Cook University, Cairns, QLD, Australia.

Carter, Alexandra, David, Madeina, Whap, Terrence, Hoffman, Luke, Scott, Abigail, and Rasheed, Michael (2021) Torres Strait Seagrass 2021 Report Card. Report. James Cook University, Cairns, QLD, Australia.

Kihwele, E.S., Veldhuis, M.P., Loishooki, A., Hongoa, J.R., Hopcraft, J.G.C., Olff, H., and Wolanski, E. (2021) Upstream land-use negatively affects river flow dynamics in the Serengeti National Park. Ecohydrology and Hydrobiology, 21 (1). pp. 1-12.

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Brodie, Jon E. (2021) Water Quality Studies in the Great Barrier Reef region and links to management, 1890 – 2016. Report. TropWATER, Townsville, QLD, Australia.

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Ebner, Brendan C., Donaldson, James A., Murphy, Helen, Thuesen, Paul, Ford, Andrew, Schaffer, Jason, and Keith, Philippe (2021) Waterfalls mediate the longitudinal distribution of diadromous predatory fishes structuring communities in tropical, short, steep coastal streams. Freshwater Biology, 66 (6). pp. 1225-1241.

Hoffmann, L.R., and Rasheed, M.A. (2021) Weipa Dredge Material Placement Area Marine Macrophyte Assessment 2020. Report. TropWATER, Cairns, QLD, Australia.

Collier, C.J., Langlois, L.M., McMahon, K.M., Udy, J., Rasheed, M., Lawrence, E., Carter, A.B., Fraser, M.W., and McKenzie, L.J. (2021) What lies beneath: predicting seagrass below-ground biomass from above-ground biomass, environmental conditions and seagrass community composition. Ecological Indicators, 121. 107156.

Iles, Jordan, and Waltham, Nathan (2021) Whitsunday Water Quality Monitoring Blueprint for Tourism Operators: Quarterly update - January 2021 Report 21/02. Report. TropWATER, Townsville.

Waltham, Nathan, and Schaffer, Jason (2021) Will fencing floodplain and riverine wetlands from feral pig damage conserve fish community values? Ecology and Evolution, 11 (20). pp. 13780-13792.

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Garzon-Garcia, Alexandra, Burton, Joanne M., Lewis, Stephen, Bainbridge, Zoe, De Hayr, Rob, Moody, Philip, and Brodie, Jon (2021) The bioavailability of nitrogen associated with sediment in riverine plumes of the Great Barrier Reef. Marine Pollution Bulletin, 173. 112910.

Davis, Aaron M., Webster, Anthony J., Fitch, Peter, Fielke, Simon, Taylor, Bruce M., Morris, Sheriden, and Thorburn, Peter J. (2021) The changing face of science communication, technology, extension and improved decision-making at the farm-water quality interface. Marine Pollution Bulletin, 169. 112534.

Canning, Adam D., and Death, Russell G. (2021) The influence of nutrient enrichment on riverine food web function and stability. Ecology and Evolution, 11 (4). pp. 942-954.

Wolanski, E., Petus, C., Lambrechts, J., Brodie, J., Waterhouse, J., and Tracey, D. (2021) The intrusion of polluted Fly River mud into Torres Strait. Marine Pollution Bulletin, 166. 112243.

Scott, Abbi, York, Paul, Macreadie, Peter, and Rasheed, Michael (2021) The role of herbivores as ecosystem engineers in tropical seagrass meadows. In: [Presented at the Australian Marine Sciences Association Conference 2021]. From: Australian Marine Sciences Association Conference 2021: Marine Science in the Anthropocene, 27 June - 2 July 2021, Virtual.

Carter, Alex B., Collier, Catherine, Lawrence, Emma, Rasheed, Michael A., Robson, Barbara J., and Coles, Rob (2021) A spatial analysis of seagrass habitat and community diversity in the Great Barrier Reef World Heritage Area. Scientific Reports, 11. 22344.

Ferse, Sebastian C.A., Hein, Margaux Y., and Rölfer, Lena (2021) A survey of current trends and suggested future directions in coral transplantation for reef restoration. PLoS ONE, 16 (5). e0249966.

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Devlin, Michelle J., Lyons, Brett P., Johnson, Johanna, and Hills, Jeremy (2021) The tropical Pacific Oceanscape: Current issues, solutions and future possibilities. Marine Pollution Bulletin, 166. 112181. pp. 1-10.

Templeman, Michelle A., McKenzie, Madeline R., and Kingsford, Michael J. (2021) The utility of jellyfish as marine biomonitors. Marine Pollution Bulletin, 173. 113056.

Moran, Lisandro, Rincon, Jose Ely, Sibira, Luis, Ortega, Maria G., and Barrios-Garrido, Hector (2020) Nuevos registros del camarón tigre Penaeus monodon Fabricius, 1798 (Decapoda: Penaeidae) en el Sistema del Lago de Maracaibo, Venezuela [New records of Giant Tiger Prawn, Penaeus monodon Fabricius, 1798 (Decapoda: Panaeidae) in the Maracaibo Lake System, Venezuela]. Ecotrópicos, 32. e0015.

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Abbott, Brett N., Wallace, Jim, Nicholas, David M., Karim, Fazlul, and Waltham, Nathan J. (2020) Bund removal to re-establish tidal flow, remove aquatic weeds and restore coastal wetland services—North Queensland, Australia. PLoS ONE, 15 (1). e0217531.

Vilas, Maria P., Thorburn, Peter J., Fielke, Simon, Webster, Tony, Mooij, Martijn, Biggs, Jody S., Zhang, Yi-Fan, Adham, Adam, Davis, Aaron, Dungan, Bertrand, Butler, Roger, and Fitch, Peter (2020) 1622WQ: a web-based application to increase farmer awareness of the impact of agriculture on water quality. Environmental Modelling and Software, 132. 104816.

York, P.H., and Rasheed, M.A. (2020) Annual Seagrass Monitoring in the Mackay‐Hay Point Region 2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Devlin, Michelle, Smith, Andy, Graves, Carolyn A., Petus, Caroline, Tracey, Dieter, Maniel, Michael, Hooper, Eryn, Kotra, Kryshna, Samie, Erie, Loubser, David, and Lyons, Brett P. (2020) Baseline assessment of coastal water quality, in Vanuatu, South Pacific: insights gained from in-situ sampling. Marine Pollution Bulletin, 160. 111651.

Schlaefer, Jodie A., Wolanski, Eric, Yadav, Shreya, and Kingsford, Michael J. (2020) Behavioural maintenance of highly localised jellyfish (Copula sivickisi, class Cubozoa) populations. Marine Biology, 167. 40.

McLeod, Ian M., Bourne, David, Ceccarelli, Daniela M., Boström-Einarsson, Lisa, Cook, Nathan, Fulton, Stella E., Hancock, Boze, Harrison, Peter, Hein, Margaux, Le Port, Agnès, Paewai-Higgins, Roma, Smith, Hillary A., and Smith, Adam (2020) Best practice coral restoration for the Great Barrier Reef. Report. Reef and Rainforest Research Centre Limited (RRRC), Cairns, QLD, Australia.

Lintermans, Mark, Geyle, Hayley M., Beatty, Stephen, Brown, Culum, Ebner, Brendan C., Freeman, Rob, Hammer, Michael P., Humphreys, William F., Kennard, Mark J., Kern, Pippa, Martin, Keith, Morgan, David L., Raadik, Tarmo A., Unmack, Peter J., Wager, Rob, Woinarski, John C.Z., and Garnett, Stephen T. (2020) Big trouble for little fish: identifying Australian freshwater fishes in imminent risk of extinction. Pacific Conservation Biology, 26 (4). pp. 365-377.

Stewart-Sinclair, Phoebe J., Purandare, Jemma, Bayraktarov, Elisa, Waltham, Nathan, Reeves, Simon, Statton, John, Sinclair, Elizabeth A., Brown, Benjamin M., Shribman, Zoë I., and Lovelock, Catherine E. (2020) Blue restoration - building confidence and overcoming barriers. Frontiers in Marine Science, 7. 541700.

Saunders, Megan I., Doropoulos, Christopher, Bayraktarov, Elisa, Babcock, Russell C., Gorman, Daniel, Eger, Aaron M., Vozzo, Maria L., Gillies, Chris L., Vanderklift, Mathew A., Steven, Andy D.L., Bustamante, Rodrigo H., and Silliman, Brian R. (2020) Bright spots in coastal marine ecosystem restoration. Current Biology, 30 (24). R1500-R1510.

Villacorta Rath, Cecilia, Adekunle, Adeshina I., Edmunds, Richard C., Strugnell, Jan M., Schwarzkopf, Lin, and Burrows, Damien (2020) Can environmental DNA be used to detect first arrivals of the cane toad, Rhinella marina, into novel locations? Environmental DNA, 2 (4). pp. 635-646.

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Thomas, Colette R., Bennett, William W., Garcia, Clement, Simmonds, Andrew, Honchin, Carol, Turner, Ryan, Madden Hof, Christine A., and Bell, Ian (2020) Coastal bays and coral cays: multi-element study of Chelonia mydas forage in the Great Barrier Reef (2015–2017). Science of the Total Environment, 740. 140042.

Fillols, Emilie, Davis, Aaron M., Lewis, Stephen E., and Ward, Andrew (2020) Combining weed efficacy, economics and environmental considerations for improved herbicide management in the Great Barrier Reef catchment area. Science of the Total Environment, 720. 137481.

Lambert, V., Collier, C., Brodie, J., Adams, M.P., Baird, M., Bainbridge, Z., Carter, A., Lewis, S., Rasheed, M., Saunders, M., and O'Brien, K. (2020) Connecting Sediment Load Targets to Ecological Outcomes for Seagrass. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Gillies, Chris L., Castine, Sarah A., Alleway, Heidi K., Crawford, Christine, Fitzsimons, James, Hancock, Boze, Koch, Paul, McAfee, Domonic, McLeod, Ian M., and zu Ermgassen, Philine S.E. (2020) Conservation status of the Oyster Reef Ecosystem of Southern and Eastern Australia. Global Ecology and Conservation, 22. e00988.

He, Ziwen, Xu, Shaohua, Zhang, Zhang, Guo, Wuxia, Lyu, Haomin, Zhong, Cairong, Boufford, David E., Duke, Norman C., The International Mangrove Consortium, and Shi, Suhua (2020) Convergent adaptation of the genomes of woody plants at the land-sea interface. National Science Review, 7 (6). pp. 978-993.

McLeod, Ian, and Newlands, Maxine (2020) Coral restoration in a warming world. The Marine Biologist, 14 (April). pp. 26-29.

Bostrom Einarsson, Lisa, Babcock, Russel C., Bayraktarov, Elisa, Ceccarelli, Daniella, Cook, Nathan, Ferse, Sebastian C.A., Hancock, Boze, Harrison, Peter, Hein, Margaux, Shaver, Elizabeth, Smith, Adam, Suggett, David, Stewart-sinclair, Phoebe J., Tardi, Tali, and McLeod, Ian M. (2020) Coral restoration – a systematic review of current methods, successes, failures and future directions. PLoS ONE, 15 (1). e0226631.

Connolly, Niall M., and Pearson, Richard G. (2020) Do constrained immigration rates and high beta diversity explain contrasting productivity-diversity patterns measured at different scales? Oecologia, 194 (3). pp. 481-490.

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Benson, Lee, and Pearson, Richard G. (2020) Dynamics of organic material and invertebrates in a tropical headwater stream. Hydrobiologia, 847 (1). pp. 121-136.

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Reeves, Simon E., Renzi, Julianna J., Fobert, Emily K., Silliman, Brian R., Hancock, Boze, and Gillies, Chris L. (2020) Facilitating better outcomes: how positive species interactions can improve oyster reef restoration. Frontiers in Marine Science, 7. 656.

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Edmunds, Richard C., and Burrows, Damien (2020) Got glycogen?: Development and multispecies validation of the novel preserve, precipitate, lyse, precipitate, purify (pplpp) workflow for environmental dna extraction from Longmire's preserved water samples. Journal of Biomolecular Techniques, 31 (4). pp. 125-150.

Chartrand, K.M., Fletcher-Leonhardt, J.D., and Rasheed, M.A. (2020) Green Island Jetty Repairs Coral Monitoring Report – December 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Scott, Abigail L., York, Paul H., and Rasheed, Michael A. (2020) Green turtle (Chelonia mydas) grazing plot formation creates structural changes in a multi-species Great Barrier Reef seagrass meadow. Marine Environmental Research, 162. 105183.

McLeod, I.M., Bostrom Einarsson, L., Creighton, C., D'Anastasi, B., Diggles, B., Dwyer, P.G., Firby, L., Le Port, A., Luongo, A., Martinez-Baena, F., McOrrie, S., Heller-Wagner, G., and Gillies, C.L (2020) Habitat value of Sydney rock oyster (Saccostrea glomerata) reefs on soft sediments. Marine and Freshwater Research, 71 (7). pp. 771-781.

Ricart, Aurora M., York, Paul H., Bryant, Catherine V., Rasheed, Michael A., Ierodiaconou, Daniel, and Macreadie, Peter I. (2020) High variability of Blue Carbon storage in seagrass meadows at the estuary scale. Scientific Reports, 10. 5865.

Tonin, Alan M., Boyero, Luz, Bambi, Paulino, Pearson, Richard, Correa-Araneda, Francisco, and Goncalves, José (2020) High within‐stream replication is needed to predict litter fluxes in wet–dry tropical streams. Freshwater Biology, 65 (4). pp. 688-697.

McLeod, Ian M., Heller-Wagner, Gideon, Gillies, Chris, Boström-Einarsson, Lisa, and Dwyer, Patrick G. (2020) Hitching a ride on Hercules: fatal epibiosis drives ecosystem change from mud banks to oyster reefs. Ecology, 101 (6). e03032.

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Paris, Claire Beatrix, and Wolanski, Eric (2020) The Importance of Behavior in the Recruitment of Marine Fauna and Flora. Frontiers Media SA, Lausanne, Switzerland.

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Wolanski, Eric, Wattayakorn, Gullaya, Furukawa, Keita, and Chavanich, Suchana Apple (2020) Integrating science in the management of enclosed seas - a synthesis. Estuarine Coastal And Shelf Science, 234. 106647. pp. 1-3.

Anthony, Kenneth R. N., Helmstedt, Kate J., Bay, Line K., Fidelman, Pedro, Hussey, Karen E., Lundgren, Petra, Mead, David, McLeod, Ian M., Mumby, Peter J., Newlands, Maxine, Schaffelke, Britta, Wilson, Kerrie A., and Hardisty, Paul E. (2020) Interventions to help coral reefs under global change – a complex decision challenge. PLoS ONE, 15 (8). e0236399.

Allard, Sarah M., Costa, Matthew T., Bulseco, Ashley N., Helfer, Véronique, Wilkins, Laetitia G.E., Hassenrück, Christiane, Zengler, Karsten, Zimmer, Martin, Erazo, Natalia, Mazza Rodrigues, Jorge L., Duke, Norman, Melo, Vânia M.M., Vanwonterghem, Inka, Junca, Howard, Makonde, Huxley M., Jiménez, Diego Javier, Tavares, Tallita C.L., Fusi, Marco, Daffonchio, Daniele, Duarte, Carlos M., Peixoto, Raquel S., Rosado, Alexandre S., Gilbert, Jack A., and Bowman, Jeff (2020) Introducing the mangrove microbiome initiative: identifying microbial research priorities and approaches to better understand, protect, and rehabilitate mangrove ecosystems. mSystems, 5 (5). e0065820.

Wolanski, Eric, Choukroun, Severine, and Nhan, Nguyen Huu (2020) Island building and overfishing in the Spratly Islands archipelago are predicted to decrease larval flow and impact the whole system. Estuarine, Coastal and Shelf Science, 233. 106545.

Duke, Norman (2020) Mangrove harbingers of coastal degradation seen in their responses to global climate change coupled with ever-increasing human pressures. Human Ecology Journal of the Commonwealth Human Ecology Council – Mangrove Special Issue, 30 (April 2020). pp. 19-23.

Rojas-Cañizales, Daniela, Espinoza-Rodríguez, Nínive, Petit-Rodríguez, María J., Palmar, Jordano, Mejías-Balsalobre, Carmen, Wildermann, Natalie, Barros, Tito, and Barrios-Garrido, Hector (2020) Marine turtle mortality in a southern Caribbean artisanal fishery: a threat for immature green turtles. Regional Studies in Marine Science, 38. 101380.

Waltham, Nathan J., Pyott, Merv, Buelow, Christina, and Wearne, Lynise (2020) Mechanical harvester removes invasive aquatic weeds to restore water quality and fish habitat values on the Burdekin floodplain. Ecological Management and Restoration, 21 (3). pp. 187-197.

Baptista, Vânia, Leitão, Francisco, Morais, Pedro, Teodósio, Maria Alexandra, and Wolanski, Eric (2020) Modelling the ingress of a temperate fish larva into a nursery coastal lagoon. Estuarine, Coastal and Shelf Science, 235. 106601.

Huerlimann, Roger, Maes, Gregory E., Maxwell, Michael J., Mobli, Mehdi, Launikonis, Bradley S., Jerry, Dean R., and Wade, Nicholas M. (2020) Multi-species transcriptomics reveals evolutionary diversity in the mechanisms regulating shrimp tail muscle excitation-contraction coupling. Gene, 752. 144765.

Sasmito, Sigit D., Kuzyakov, Yakov, Lubis, Ali Arman, Murdiyarso, Daniel, Hutley, Lindsay B., Bachri, Samsul, Friess, Daniel A., Martius, Christopher, and Borchard, Nils (2020) Organic carbon burial and sources in soils of coastal mudflat and mangrove ecosystems. Catena, 187. 104414.

McKenzie, Len J., and Yoshida, Rudi L. (2020) Over a decade monitoring Fiji's seagrass condition demonstrates resilience to anthropogenic pressures and extreme climate events. Marine Pollution Bulletin, 160. 111636.

Waltham, Nathan J., McCann, Jack, Power, Trent, Moore, Matt, and Buelow, Christina (2020) Patterns of fish use in urban estuaries: engineering maintenance schedules to protect broader seascape habitat. Estuarine, Coastal and Shelf Science, 238. 106729.

Ayling, T., Ayling, A., Chartrand, K.M., and Rasheed, M.A. (2020) Port of Abbot Point Ambient Coral Monitoring Surveys: 2018-2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

van de Wetering, C., York, P.H., Reason, C.L., Wilkinson, J., and Rasheed, M.A. (2020) Port of Abbot Point Long-Term Seagrass Monitoring Program 2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Chartrand, K.M., and Wilkinson, J. (2020) Port of Townsville Chanel Upgrade Project: Western Breakwater Seagrass Assessment April 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Chartrand, K.M., Wilkinson, J.S., and Rasheed, M.A. (2020) Port of Townsville Seagrass Monitoring Program, interim report: Sept/Oct 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

McKenna, S., Chartrand, K., van de Wetering, C., Wells, J., Carter, A., and Rasheed, M. (2020) Port of Townsville Seagrass Monitoring Program: 2019. Report. James Cook University, Cairns, QLD, Australia.

McKenna, S., Wilkinson, J., Chartrand, K., and van de Wetering, C. (2020) Port of Townsville Seagrass Monitoring Program: 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, C.V., Wilkinson, J.S., Chartrand, K.M., van de Wetering, C., and Rasheed, M.A. (2020) Port of Townsville Seagrass Monitoring Program: Interim report: April 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Rasheed, Michael, Hoffmann, Luke, Reason, Carissa, and McKenna, Skye (2020) Port of Weipa long-term seagrass monitoring program, 2000-2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Smith, Tim, Reason, Carissa, McKenna, Skye, and Rasheed, Michael (2020) Port of Weipa long‐term seagrass monitoring program, 2000‐2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Ayling, T., Ayling, A., Chartrand, K.M., and Rasheed, M.A. (2020) Ports of Mackay and Hay Point Ambient Coral Monitoring Surveys: 2018-2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Adams, Matthew P., Koh, Edwin J.Y., Vilas, Maria P., Collier, Catherine J., Lambert, Victoria M., Sisson, Scott A., Quiroz, Matias, McDonald-Madden, Eve, McKenzie, Len J., and O'Brien, Katherine R. (2020) Predicting seagrass decline due to cumulative stressors. Environmental Modelling & Software, 130. 104717.

Bayraktarov, Elisa, Brisbane, Shantala, Hagger, Valerie, Smith, Carter S., Wilson, Kerrie A., Lovelock, Catherine E., Gillies, Chris, Steven, Andrew D.L., and Saunders, Megan I. (2020) Priorities and motivations of marine coastal restoration research. Frontiers in Marine Science, 7. 484.

Hamman, Evan, Pointon, Revel, and Purandare, Jemma (2020) Protecting coastal wetland habitat for migratory shorebirds: is Australian law doing enough? Environmental and Planning Law Journal, 37 (4). pp. 477-496.

Dahdouh-guebas, Farid, Ajonina, Gordon N., Amir, A. Aldrie, Andradi-brown, Dominic A., Aziz, Irfan, Balke, Thorsten, Barbier, Edward B., Cannicci, Stefano, Cragg, Simon M., Cunha-Lignon, Marília, Curnick, David J., Duarte, Carlos M., Duke, Norman C., Endsor, Charlie, Fratini, Sara, Feller, Ilka C., Fromard, François, Hugé, Jean, Huxham, Mark, Kairo, James G., Kajita, Tadashi, Kathiresan, Kandasamy, Koedam, Nico, Lee, Shing Yip, Lin, Hsing-Juh, Mackenzie, Jock R., Mangora, Mwita M., Marchand, Cyril, Meziane, Tarik, Minchinton, Todd E., Pettorelli, Nathalie, Polanía, Jaime, Polgar, Gianluca, Poti, Meenakshi, Primavera, Jurgenne, Quarto, Alfredo, Rog, Stefanie M., Satyanarayana, Behara, Schaeffer-Novelli, Yara, Spalding, Mark D., Van der Stocken, Tom, Wodehouse, Dominic, Yong, Jean W.H., Zimmer, Martin, and Friess, Daniel A. (2020) Public perceptions of mangrove forests matter for their conservation. Frontiers in Marine Science, 7. 603651.

Carter, A.B., Kish, H., and Chartrand, K. (2020) Reef Restoration Foundation Hastings Reef Coral Nursery Monitoring: December 2019 - July 2020. Report. James Cook University, Cairns, QLD, Australia.

Crawford, C., Edgar, G., Gillies, C. L., and Heller-Wagner, G. (2020) Relationship of biological communities to habitat structure on the largest remnant flat oyster reef (Ostrea angasi) in Australia. Marine and Freshwater Research, 71 (8). pp. 972-983.

Waltham, Nathan J., Coleman, Laura, Buelow, Christina, Fry, Scott, and Burrows, Damien (2020) Restoring fish habitat values on a tropical agricultural floodplain: learning from two decades of aquatic invasive plant maintenance efforts. Ocean and Coastal Management, 198. 105355.

Fitzsimons, James A., Branigan, Simon, Gillies, Chris L., Brumgaugh, Robert D., Cheng, Jun, DeAngelis, Bryan M., Geselbracht, Laura, Hancock, Boze, Jeffs, Andrew, McDonald, Tein, McLeod, Ian M., Pogoda, Bernadette, Theuerkauf, Seth J., Thomas, Marine, Westby, Stephanie, and zu Ermgassen, Philine S.E. (2020) Restoring shellfish reefs: global guidelines for practitioners and scientists. Conservation Science and Practice, 2 (6). e198.

Buelow, Christina A., and Waltham, Nathan J. (2020) Restoring tropical coastal wetland water quality: ecosystem service provisioning by a native freshwater bivalve. Aquatic Sciences, 82. 77.

Hoffmann, Luke, Edwards, Will, York, Paul H., and Rasheed, Michael A. (2020) Richness of primary producers and consumer abundance mediate epiphyte loads in a tropical seagrass system. Diversity, 12 (10). 384.

Jinks, Kristin I., Rasheed, Michael A., Brown, Christopher J., Olds, Andrew D., Schlacher, Thomas A., Sheaves, Marcus, York, Paul H., and Connolly, Rod M. (2020) Saltmarsh grass supports fishery food webs in subtropical Australian estuaries. Estuarine, Coastal and Shelf Science, 238. 106719.

Harrison, Peter, Chartrand, Katie, and Suggett, David (2020) Scaling up coral restoration using innovative Symbiodinium co‐culture and mass larval supply on reefs. Report. James Cook University, Cairns, QLD, Australia.

Ebner, B.C., Millington, M., Holmes, B.J., Wilson, D.T., Sydes, T., Bickel, T.O., Power, T., Hammer, M., Lach, L., Schaffer, J., Lymbery,, A., and Morgan, D. (2020) Scoping the biosecurity risks and appropriate management relating to the freshwater ornamental aquarium trade across northern Australia. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

de los Santos, Carmen, Scott, Abigail, Arias-Ortiz, Ariane, Jones, Benjamin, Kennedy, Hilary, Mazarrasa, Inés, McKenzie, Len, Nordlund, Lina, de la Torre-Castro, Maricela, Unsworth, Richard, and Ambo-Rappe, Rohani (2020) Seagrass ecosystem services: Assessment of scale and benefits. Report Section. UNEP, Nairobi, Kenya.

Reason, C.L., McKenna, S.A., and Rasheed, M.A. (2020) Seagrass habitat of Cairns Harbour and Trinity Inlet: Cairns Shipping Development Program and Annual Monitoring Report 2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

van de Wetering, C., Carter, A., and Rasheed, M. (2020) Seagrass habitat of Mourilyan Harbour: annual monitoring report – 2019. Report. James Cook University, Cairns, QLD, Australia.

Tan, Yi Mei, Dalby, Oliver, Kendrick, Gary A., Statton, John, Sinclair, Elizabeth A., Fraser, Matthew W., Macreadie, Peter I., Gillies, Chris L., Coleman, Rhys, Waycott, Michelle, van Dijk, Kor-Jent, Vergés, Adriana, Ross, Jeff D., Campbell, Marnie L., Matheson, Fleur E., Jackson, Emma L., Irving, Andrew D., Govers, Laura, Connolly, Rod M., McLeod, Ian M., Rasheed, Michael A., Kirkman, Hugh, Flindt, Morgens R., Lange, Troels, Miller, Adam D,, and Sherman, Craig D.H. (2020) Seagrass restoration is possible: insights and lessons from Australia and New Zealand. Frontiers in Marine Science, 7. 617.

Smith, T.M., Chartrand, K.M., Wells, J.N., Carter, A.B., and Rasheed, M.A. (2020) Seagrasses in Port Curtis and Rodds Bay 2019 Annual long‐term monitoring and whole of port survey: a report for Gladstone Ports Corporation. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Barrios-Garrido, H., Becker, P., Bjorndal, K.A., Bolten, A.B., Diez, C.E., Espinoza-rodriguez, N., Fastigi, M., Gray, J., Harrison, E., Hart, K.A., Meylan, A., Meylan, P., Montiel-villalobos, M.G., Morales, F., Nava, M., Palmar, J., Petit-Rodriguez, M.J., Richardson, P., Rodriguez-Clark, K.M., Rojas-Canizales, D., Sandoval, M.G., Valverde, R.A., van Dam, R., Walker, J.T., Wildermann, N., and Hamann, M. (2020) Sources and movements of marine turtles in the Gulf of Venezuela: regional and local assessments. Regional Studies in Marine Science, 36. 101318.

Ceccarelli, Daniela M., McLeod, Ian M., Boström-Einarsson, Lisa, Bryan, Scott E., Chartrand, Kathryn M., Emslie, Michael J., Gibbs, Mark T., Gonzalez Rivero, Manuel, Hein, Margaux Y., Heyward, Andrew, Kenyon, Tania M., Lewis, Brett M., Newlands, Maxine, Mattocks, Neil, Schläppy, Marie-Lise, Suggett, David J., and Bay, Line K. (2020) Substrate stabilisation and small structures in coral restoration: state of knowledge, and considerations for management and implementation. PLoS ONE, 15 (10). e0240846.

Rodellas, Valenti, Cook, Peter G., McCallum, James, Andrisoa, Aladin, Meule, Samuel, and Stieglitz, Thomas C. (2020) Temporal variations in porewater fluxes to a coastal lagoon driven by wind waves and changes in lagoon water depths. Journal of Hydrology, 581. 124363.

Baker, Ronald, and Waltham, Nathan (2020) Tethering mobile aquatic organisms to measure predation: a renewed call for caution. Journal of Experimental Marine Biology and Ecology, 523. 151270.

Waltham, Nathan J., and Sheaves, Marcus (2020) Thermal exposure risks to mobile tropical marine snails: are eco-engineered rock pools on seawalls scale-specific enough for comprehensive biodiversity outcomes? Marine Pollution Bulletin, 156. 111237.

Carter, Alexandra, Mellors, Jane, Whap, Terrence, and Hoffman, Luke (2020) Torres Strait Seagrass 2020 Report Card. Report. James Cook University, Cairns, QLD, Australia.

Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Rashti, Mehran Rezaei, Cook, Freeman, Parnell, Andrew, Esfandbod, Maryam, and Stevens, Thomas (2020) Tracing the sources of sediment and associated particulate nitrogen from different land uses in the Johnstone River catchment, Wet Tropics, northeastern Australia. Marine Pollution Bulletin, 157. 111344.

Unsworth, Richard K.F., Jones, Benjamin, Fortes, Miguel, Scott, Abbi, Macreadie, Peter, Kerninon, Fanny, and McKenzie, Len (2020) Transforming conservation and understanding of seagrass ecosystems through the use of citizen science. in Out of the blue: The value of seagrass to the environment and to people. Report Section. UNEP, Nairobi, Kenya.

Waltham, Nathan J., Elliott, Michael, Lee, Shing Yip, Lovelock, Catherine, Duarte, Carlos M., Buelow, Christina, Simenstad, Charles, Nagelkerken, Ivan, Claassens, Louw, Wen, Colin K.-C., Barletta, Mario, Connolly, Rod, Gillies, Christopher, Mitsch, William, Ogburn, Matthew B., Purandare, Jemma, Possingham, Hugh, and Sheaves, Marcus (2020) UN decade on ecosystem restoration 2021-2020 - what chance for success in restoring coastal ecosystems? Frontiers in Marine Science, 7. 71. pp. 1-5.

Barrios-Garrido, Héctor A., Montiel-Villalobos, María G., Palmar, Jordano, and Rodríguez-Clark, Kathryn M. (2020) Wayuú capture of green turtles, Chelonia mydas, in the Gulf of Venezuela: a major Caribbean artisanal turtle fishery. Ocean and Coastal Management, 188. 105123.

Smith, T.M., Reason, C.L., and Rasheed, M.A. (2020) Western Basin expansion reclamation area and barge unloading facility seagrass and marine plants survey. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Lewis, S., Bainbridge, Z., Stevens, T., Garzon-George, A., Bahador, M., Burton, J., Rezaei Rasht, M., James, C., Smithers, S., and Olley, J. (2020) What’s really damaging the Reef?: Tracing the origin and fate of the ecologically detrimental sediment and associated bioavailable nutrients. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Iles, J.A., and Waltham, N.J. (2020) Whitsunday Water Quality Monitoring Blueprint for Tourism Operators: Quarterly update - July 2020: A Report for Reef Catchments (Mackay Whitsunday Isaac) Limited. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Marsh, H., Grech, A., Miller, R., and Collins, K. (2020) An assessment of the distribution and abundance of dugongs and large in-water turtles in Cleveland Bay and adjacent bays to provide baseline information for the Port of Townsville Channel Upgrade Project: a report for the Port of Townsville Limited. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Ebner, Brendan C., and Kemp, Darrell J. (2020) The boy can dance: ritual courtship of the opal cling goby. Pacific Conservation Biology, 26. pp. 201-203.

Sheaves, Marcus, Abrantes, Katya, Barnett, Adam, Benham, Claudia, Dale, Patricia, Mattone, Carlo, Sheaves, Alison, Waltham, Nathan, and Bradley, Michael (2020) The consequences of paradigm change and poorly validated science: the example of the value of mangroves to fisheries. Fish and Fisheries, 21 (5). pp. 1067-1075.

Hayes, Matthew A., McClure, Eva C., York, Paul H., Jinks, Kristin I., Rasheed, Michael A., Sheaves, Marcus, and Connolly, Rod M. (2020) The differential importance of deep and shallow seagrass to Nekton assemblages of The Great Barrier Reef. Diversity, 12 (8). 292.

Collier, C.J., Carter, A.B., Rasheed, M., McKenzie, L., Udy, J., Coles, R., Brodie, J., Waycott, M., O’Brien, K.R., Saunders, M., Adams, M., Martin, K., Honchin, C., Petus, C., and Lawrence, E. (2020) An evidence-based approach for setting desired state in a complex Great Barrier Reef seagrass ecosystem: a case study from Cleveland Bay. Environmental and Sustainability Indicators, 7. 100042.

McKenzie, Len J, Nordlund, Lina M., Jones, Benjamin L., Cullen-Unsworth, Leanne C., Roelfsema, Chris, and Unsworth, Richard K.F. (2020) The global distribution of seagrass meadows. Environmental Research Letters, 15 (7). 074041.

Wolanski, Eric, and Lambrechts, Jonathan (2020) The net water circulation in the far Northern Great Barrier Reef. Estuarine, Coastal and Shelf Science, 235. 106569.

Younes, Nicolas, Northfield, Tobin D., Joyce, Karen E., Maier, Stefan W., Duke, Norman C., and Lymburner, Leo (2020) A novel approach to modelling mangrove phenology from satellite images: a case study from Northern Australia. Remote Sensing, 12 (24). 4008.

Stieglitz, Thomas C., Dujon, Antoine M., Peel, Joanne, and Amice, Erwan (2020) The potential of marginal coastal nursery habitats for the conservation of a culturally important Caribbean marine species. Diversity and Distributions, 26 (5). pp. 565-574.

Duke, N.C. (2020) A systematic revision of the vulnerable mangrove genus Pelliciera (Tetrameristaceae) in equatorial America. Blumea, 65. pp. 107-120.

McAfee, Dominic, McLeod, Ian M., Bostrom-Einarsson, Lisa, and Gillies, Chris L. (2020) The value and opportunity of restoring Australia's lost rock oyster reefs. Restoration Ecology, 28. 2. pp. 304-314.

Dubuc, Alexia, Baker, Ronald, Marchand, Cyril, Waltham, Nathan J., and Sheaves, Marcus (2019) Hypoxia in mangroves: occurrence and impact on valuable tropical fish habitat. Biogeosciences, 16 (20). pp. 3959-3976.

Wu, Paul Pao-Yen, Mengersen, Kerrie, Caley, M. Julian, McMahon, Kathryn, Rasheed, Michael A., and Kendrick, Gary A. (2019) Analysing the dynamics and relative influence of variables affecting ecosystem responses using functional PCA and boosted regression trees: a seagrass case study. Methods in Ecology and Evolution, 10 (10). pp. 1723-1733.

York, Paul, and Rasheed, Michael (2019) Annual Seagrass Monitoring in the Mackay-Hay Point Region – 2018. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Pratchett, Morgan, Bridge, Thomas, Brodie, Jon, Cameron, Darren, Day, Jonathan, Emslie, Mike, Grech, Alana, Hamann, Mark, Heron, Scott, Hoey, Andrew, Hoogenboom, Mia, Lough, Janice, Morrison, Tiffany, Osborne, Kate, Read, Mark, Schauble, Chloe, Smithers, Scott, Sweatman, Hugh, and Waterhouse, Jane (2019) Australia's Great Barrier Reef. In: Sheppard, Charles, (ed.) World Seas: an environmental evaluation. Elsevier, London, UK, pp. 333-362.

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