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Arbon, P.M., Andrade Martinez, Maria, Garrett, M. Andrade, Jerry, D.R., and Condon, K. (2024) Determining patterns of tissue tropism for IHHNV, GAV and YHV-7 infection in giant black tiger shrimp (Penaeus monodon) using real-time RT-qPCR. Aquaculture, 584. 740680.

Qiu, Jianqiang, Chen, Bing, Huang, Wen, Zhao, Hongxia, Hu, Junru, Loh, Jiun-Yan, and Peng, Kai (2024) Dietary condensed tannin exhibits stronger growth-inhibiting effect on Chinese sea bass than hydrolysable tannin. Animal Feed Science and Technology, 308. 115880.

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Moran, Megan N., Jones, D.B., Jensen, S.A., Marcoli, R., and Jerry, D. R. (2024) Optimising commercial traits through gene editing in aquaculture: Strategies for accelerating genetic improvement. Reviews in Aquaculture. (In Press)

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Wong, Kuan Yee, Megat Mazhar Khair, Megat Hamzah, Song, Adelene Ai Lian, Masarudin, Mas Jaffri, Loh, Jiun Yan, Chong, Chou Min, Beardall, John, Teo, Michelle Yee Mun, and In, Lionel Lian Aun (2024) Recombinant lactococcal-based oral vaccine for protection against Streptococcus agalactiae infections in tilapia (Oreochromis niloticus). Fish and Shellfish Immunology, 149. 109572.

Genodepa, Jerome, Zeng, Chaoshu, Militz, Thane A., and Southgate, Paul C. (2024) Responses of digestive enzyme profiles in newly-hatched (Zoea I) larvae of the mud crab Scylla serrata to intermittent food availability and food deprivation. Comparative Biochemistry and Physiology. Part B: Biochemistry and Molecular Biology, 269. 110906.

Arbon, P.M., Andrade Martinez, M., Jerry, D.R., and Condon, K. (2024) Towards a 'systems' approach for viral challenge experiments in shrimp: Reporting guidelines for publication. Reviews in Aquaculture, 16 (2). pp. 923-941.

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Qiu, Jianqiang, Chen, Bing, Zhao, Hongxia, Huang, Wen, Cao, Junming, Wang, Guoxia, Loh, Jiun-Yan, and Peng, Kai (2024) The protective role of condensed tannins on growth inhibition and enterohepatic injury induced by histamine in Chinese seabass (Lateolabrax maculatus). Animal Feed Science and Technology, 310. 115921.

Rolton, Anne, Webb, Stephen Charles, López-Sanmartín, Monserrat, and Hutson, Kate Suzanne (2023) Bivalve digestive epithelial virosis (DEV): A cause of disease or a natural process? Journal of Invertebrate Pathology, 198. 107924.

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De Vos, Bas C., Cyrus, Mark D., Macey, Brett M., Batik, Theodore, and Bolton, John J. (2023) Combining computer vision and standardised protocols for improved measurement of live sea urchins for research and industry. Aquaculture, Fish and Fisheries, 3 (6). pp. 507-517.

Shen, Xueyan, Yáñez, José M., Gomes, Giana, Poon, Zhi Weng Josiah, Foster, Derick, Alarcon, Jorge, and Domingos, Jose A. (2023) Comparative gonad transcriptome analysis in cobia (Rachycentron canadum). Frontiers in Genetics, 14. 1128943.

Chew, Xian Zhe, Gibson-Kueh, Susan, Jerry, Dean R., and Shen, Xueyan (2023) Comparison of intestinal bacterial communities in asymptomatic and diseased Asian seabass (Lates calcarifer) with chronic enteritis and mixed bacterial infections. Aquaculture, 572. 739516.

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Qiu, Jianqiang, Huang, Wen, Cao, Junming, Zhao, Hongxia, Chen, Bing, Jiun-Yan, Loh, and Peng, Kai (2023) Dietary hydrolyzable tannins reduce growth performance and induce histological damage of Chinese seabass (Lateolabrax maculatus). Frontiers in Marine Science, 10. 1183438.

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Xu, Tian, and Zeng, Chaoshu (2023) Effects of salinity on larval survival and development of the decorator crab Camposcia retusa and food consumption patterns of megalopae. Aquaculture, 562. 738753.

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Genodepa, Jerome, Zeng, Chaoshu, Militz, Thane A., and Southgate, Paul C. (2023) Influence of Live-Food (Brachionus rotundiformis) Density at First-Feeding on Digestive Enzyme Activities in Newly Hatched (Zoea I) Larvae of the Mud Crab, Scylla serrata. Journal of Shellfish Research, 42 (3). pp. 517-523.

Genodepa, Jerome, Zeng, Chaoshu, Militz, Thane A., and Southgate, Paul C. (2023) Influence of Moult Cycles on Digestive Enzyme Activities during Early Larval Stages of Panulirus ornatus. Aquaculture Research, 2023. 9956046.

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Marc, Adrien, Guppy, Jarrod L., Marshall, Hayley, Jerry, Dean R., Rudd, Donna, and Paris, Damien B.B.P. (2023) Optimization of a non-activating medium for short-term chilled storage of barramundi (Lates calcarifer) testicular spermatozoa. Fish Physiology and Biochemistry, 49. pp. 559-576.

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Amira, Kafia Islam, Rahman, Mohammad Redwanur, Sikder, Suchandan, Khatoon, Helen, Afruj, Jinat, Haque, Mohammad Ekramul, and Minhaz, Tashrif Mahmud (2021) Data on Growth, survivability, water quality and hemato-biochemical indices of Nile Tilapia (Oreochromis niloticus) fry fed with selected marine microalgae. Data in Brief, 38. 107422.

Arbon, Phoebe M., Silva, Catarina N.S., Jones, David B., Jaccoud, Damian, Gervis, Mark, Jerry, Dean R., and Strugnell, Jan M. (2021) Development and validation of a SNP-based genotyping tool for pedigree establishment in Australian greenlip abalone Haliotis laevigata Donovan, 1808. Aquaculture Reports, 20. 100746.

Abualreesh, Muyassar, Myers, Jaelen, Gurbatow, Jeremy, Johnson, Andrew, Xing, De, Wang, Jinhai, Li, Shangjia, Coogan, Michael, Vo, Khoi, El Husseini, Nour, Creamer, David, Dunham, Rex A., and Butts, Ian A.E. (2021) Development of an effective cryopreservation protocol for Blue Catfish oogonia. North American Journal of Aquaculture, 83 (4). pp. 336-345.

Banh, Quyen Q.T., Domingos, Jose A., Pinto, Ricardo C.C., Nguyen, Kien T., and Jerry, Dean R. (2021) Dietary 17 β-oestradiol and 17 α-ethinyloestradiol alter gonadal morphology and gene expression of the two sex-related genes, dmrt1 and cyp19a1a, in juvenile barramundi (Lates calcarifer Bloch). Aquaculture Research, 52 (4). pp. 1414-1430.

Terence, Celestine, Domingos, Jose A., Angelo Uichanco, Joseph, Monteil, Yann, Monteil, Loïc, De Braux, Emmanuel, Banh, Quyen Q.T., Gibson-Kueh, Susan, and Jerry, Dean R. (2021) Early sex change of barramundi Lates calcarifer farmed in Singapore. Aquaculture Reports, 20. 100712.

Wang, Lin, Wang, Shuhong, Zeng, Chaoshu, Wang, Yuyue, and Zeng, Chunxiao (2021) Effects of food concentration and photoperiod on egg production, female life expectancy and population dynamics of the paracalanid copepod, Bestiolina amoyensis. Frontiers in Marine Science, 8. 788744.

Amira, Kafia Islam, Rahman, Mohammad Redwanur, Khatoon, Helena, Sikder, Suchandan, Islam, Skm Azizul, Afruj, Jinat, Jamal, Foujia, and Haque, Mohammad Ekramul (2021) Effects of microalgae inoculated diet on growth performance and blood parameters of Nile tilapia (Oreochromis niloticus). Bangladesh Journal of Fisheries, 33 (2). pp. 243-254.

Camus, Thomas, Rolla, Lucrezia, Jiang, Jufeng, and Zeng, Chaoshu (2021) Effects of microalgal food quantity on several productivity-related parameters of the calanoid copepod Bestiolina similis (Calanoida: Paracalanidae). Frontiers in Marine Science, 8. 812240.

Trung, Nguyen Bao, Nan, Fan-Hua, Lee, Meng-Chou, Loh, Jiun-Yan, Gong, Hong-Yi, Lu, Ming-Wei, Hang, Ho Thi, Lin, Yu-Lin, and Lee, Po-Tsang (2021) Fish-specific TLR18 in Nile tilapia (Oreochromis niloticus) recruits MyD88 and TRIF to induce expression of effectors in NF-κB and IFN pathways in melanomacrophages. Fish and Shellfish Immunology, 119. pp. 587-601.

Domingos, Jose A., Goldsbury, Julie A., Bastos Gomes, Giana, Smith, Brett G., Tomlinson, Christopher, Bade, Tim, Sander, Corey, Forrester, Justin, and Jerry, Dean R. (2021) Genotype by environment interactions of harvest growth traits for barramundi (Lates calcarifer) commercially farmed in marine vs. freshwater conditions. Aquaculture, 532. 735989.

Lee, Po-Tsang, Yamamoto, Fernando Y., Low, Chen-Fei, Loh, Jiun Yan, and Chong, Chou-Min (2021) Gut Immune System and the Implications of Oral-Administered Immunoprophylaxis in Finfish Aquaculture. Frontiers in Immunology, 12. 773193.

Mohamad, Suhaini, Liew, Hon Jung, Zainuddin, Rabiatul Adawiyyah, Rahmah, Sharifah, Waiho, Khor, Ghaffar, Mazlan Abd, Nhan, Hua Thai, Loh, Jiun‐Yan, Lim, Leong‐Seng, Chang, Yumei, Liang, Liqun, and De Boeck, Gudrun (2021) High environmental temperature and low pH stress alter the gill phenotypic plasticity of Hoven's carp Leptobarbus hoevenii. Journal of Fish Biology, 99 (1). pp. 206-218.

Banh, Quyen Q. T., Guppy, Jarrod L., Domingos, Jose A., Budd, Alyssa M., Pinto, Ricardo C. C., Marc, Adrien F., and Jerry, Dean R. (2021) Induction of precocious females in the protandrous barramundi (Lates calcarifer) through implants containing 17β-estradiol - effects on gonadal morphology, gene expression and DNA methylation of key sex genes. Aquaculture, 539. 736601.

Mariah, Sharven Rao, and Loh, Jiun-Yan (2021) Insect Meal: The Way Towards Sustainable Aquaculture? Aqua Practical, 6 (2). pp. 6-8.

Liu, Fang, Shi, Wenyuan, Ye, Haihui, Zeng, Chaoshu, and Zhu, Zhihuang (2021) Insulin-like androgenic gland hormone 1 (IAG1) regulates sexual differentiation in a hermaphrodite shrimp through feedback to neuroendocrine factors. General and Comparative Endocrinology, 303. 113706.

Navarro, Alejandro, Young, Mary, Macreadie, Peter I., Nicholson, Emily, and Ierodiaconou, Daniel (2021) Mangrove and saltmarsh distribution mapping and land cover change assessment for south-eastern Australia from 1991 to 2015. Remote Sensing, 13 (8). 1450.

Infante Villamil, Sandra, Huerlimann, Roger, and Jerry, Dean R. (2021) Microbiome diversity and dysbiosis in aquaculture. Reviews in Aquaculture, 13 (2). pp. 1077-1096.

Jaroenram, Wansadaj, Owens, Leigh, Hayakijkosol, Orachun, and Elliman, Jennifer (2021) Natural, in ovo, vertical transmission of the RNA viruses, Chequa iflavirus and Athtab bunyavirus, but not Cherax reovirus in redclaw crayfish (Cherax quadricarinatus). Aquaculture, 534. 736285.

Gibson-Kueh, Susan, Terence, Celestine, Chew, Xian Zhe, Uichanco, Joseph Angelo, and Shen, Xueyan (2021) PCR, in-situ hybridization, and phylogenetic analysis suggest that ‘big belly’ disease in barramundi, Lates calcarifer (Bloch), is caused by a novel Vibrio species. Journal of Fish Diseases, 44 (12). pp. 1985-1992.

Cabral, Reniel B., Bradley, Darcy, Mayorga, Juan, Goodell, Whitney, Friedlander, Alan M., Sala, Enric, Costello, Christopher, and Gaines, Steven D. (2021) Reply to Hilborn: We agree that MPAs can improve fish catch in the South and Southeast Asia. Proceedings of the National Academy of Sciences of the United States of America, 118 (17). e2100660118.

Cabral, Reniel B., Bradley, Darcy, Mayorga, Juan, Goodell, Whitney, Friedlander, Alan M., Sala, Enric, Costello, Christopher, and Gaines, Steven D. (2021) Reply to Ovando et al.: How connected are global fisheries? Proceedings of the National Academy of Sciences of the United States of America, 118 (23). e2100364118.

Hayakijkosol, Orachun, Jaroenram, Wansadaj, Owens, Leigh, and Elliman, Jennifer (2021) Reverse transcription polymerase chain reaction (RT-PCR) detection for Australian Cherax reovirus from redclaw crayfish (Cherax quadricarinatus). Aquaculture, 530. 735881.

Massault, C., Jones, D.B., Zenger, K., Strugnell, J.M., Barnard, R., and Jerry, D.R. (2021) A SNP parentage assignment panel for the silver lipped pearl oyster (Pinctada maxima). Aquaculture Reports, 20. 100687.

Domingos, Jose A., Shen, Xueyan, Terence, Celestine, Senapin, Saengchan, Dong, Ha Thanh, Tan, Marie R., Gibson-Kueh, Susan, and Jerry, Dean R. (2021) Scale Drop Disease Virus (SDDV) and Lates calcarifer Herpes Virus (LCHV) coinfection downregulate immune-relevant pathways and cause splenic and kidney necrosis in barramundi under commercial farming conditions. Frontiers in Genetics, 12. 666897.

Chen, Jun Yu, and Zeng, Chaoshu (2021) Transition to Artemia feeding phase for orchid dottyback Pseudochromis fridmani larvae: establishing suitable prey shift time and strategy. Aquaculture, 545. 737180.

Marc, Adrien F., Guppy, Jarrod L., Bauer, Paige, Mulvey, Peter, Jerry, Dean R., and Paris, Damien B.B.P. (2021) Validation of advanced tools to evaluate sperm function in barramundi (Lates calcarifer). Aquaculture, 531. 735802.

Chen, Jun Yu, and Zeng, Chaoshu (2021) The effects of live prey and greenwater on the early larval rearing of orchid dottyback Pseudochromis fridmani. Aquaculture, 543. 737008.

Hua, Katheline (2021) A meta-analysis of the effects of replacing fish meals with insect meals on growth performance of fish. Aquaculture, 530. 735732.

Gibson-Kueh, Susan, and Uichanco, Joseph Angelo (2021) The pathology associated with putative algal toxicosis in red snapper, Lutjanus species (Bloch 1790). Journal of Fish Diseases, 44 (6). pp. 857-861.

Candebat, Caroline L., Booth, Mark A., and Pirozzi, Igor (2021) The sulfur amino acid requirements of juvenile Yellowtail Kingfish (Seriola lalandi). Aquaculture, 534. 736234.

Wei, Yujie, Lin, Dongdong, Xu, Zhanning, Gao, Xiaoman, Zeng, Chaoshu, and Ye, Haihui (2020) A possible role of crustacean cardioactive peptide in regulating immune response in hepatopancreas of mud crab. Frontiers in Immunology, 11. 711.

Dam, Chinh Thi My, Booth, Mark, Pirozzi, Igor, Salini, Michael, Smullen, Richard, Ventura, Tomer, and Elizur, Abigail (2020) Alternative feed raw materials modulate intestinal microbiota and its relationship with digestibility in Yellowtail Kingfish Seriola lalandi. Fishes, 5 (2). 14.

Priyambodo, Bayu, Jones, Clive M., and Sammut, Jesmond (2020) Assessment of the lobster puerulus (Panulirus homarus and Panulirus ornatus, Decapoda: Palinuridae) resource of Indonesia and its potential for sustainable harvest for aquaculture. Aquaculture, 528. 735563.

Nayfa, Maria G., Jones, Dave B., Benzie, John A.H., Jerry, Dean R., and Zenger, Kyall R. (2020) Comparing genomic signatures of selection between the Abbassa Strain and eight wild populations of Nile tilapia (Oreochromis niloticus) in Egypt. Frontiers in Genetics, 11. 567969.

Hair, Cathy, Militz, Thane, Daniels, Nicholas, and Southgate, Paul C. (2020) Comparison of survival, growth and burying behavior of cultured and wild sandfish (Holothuria scabra) juveniles: implications for ocean mariculture. Aquaculture, 526. 735355.

Elliman, J. Ruth, and Owens, L. (2020) Confirmation that candidatus Coxiella cheraxi from redclaw crayfish (Cherax quadricarinatus) is a close relative of Coxiella burnetii, the agent of Q-fever. Letters in Applied Microbiology, 71 (3). pp. 320-326.

Guppy, Jarrod L., Jones, David B., Kjeldsen, Shannon R., Le Port, Agnes, Khatkar, Mehar S., Wade, Nicholas M., Sellars, Melony J., Raadsma, Herman W., Jerry, Dean R., and Zenger, Kyall R. (2020) Development and validation of a RAD-Seq target-capture based genotyping assay for routine application in advanced black tiger shrimp (Penaeus monodon) breeding programs. BMC Genomics, 21. 541.

Meemetta, Watcharachai, Domingos, Jose A., Dong, Ha Thanh, and Senapin, Saengchan (2020) Development of a SYBR Green quantitative PCR assay for detection of Lates calcarifer herpesvirus (LCHV) in farmed barramundi. Journal of Virological Methods, 285. 113920.

Jones, Clive M., and Valverde, Colin (2020) Development of mass production hatchery technology for the redclaw crayfish, Cherax quadricarinatus. Freshwater Crayfish, 25 (1). pp. 1-6.

Candebat, Caroline Lourdes, Booth, Mark, Codabaccus, Mohamed Basseer, and Pirozzi, Igor (2020) Dietary methionine spares the requirement for taurine in juvenile Yellowtail Kingfish (Seriola lalandi). Aquaculture, 522. 735090.

Mendonça, Raoani Cruz, Chen, Jun Yu, Zeng, Chaoshu, and Tsuzuki, Mônica Yumi (2020) Embryonic and early larval development of two marine angelfish, Centropyge bicolor and Centropyge bispinosa. Zygote, 28 (3). pp. 196-202.

Praeger, Christina, Vucko, Matthew J., McKinna, Lachlan, de Nys, Rocky, and Cole, Andrew (2020) Estimating the biomass density of macroalgae in land-based cultivation systems using spectral reflectance imagery. Algal Research, 50. 102009.

Valero-Rodriguez, J.M., Swearer, S.E., Dempster, T., de Nys, R., and Cole, A.J. (2020) Evaluating the performance of freshwater macroalgae in the bioremediation of nutrient-enriched water in temperate environments. Journal of Applied Phycology, 32. pp. 641-652.

Low, Chen-Fei, Chong, Chou-Min, and Loh, Jiun-Yan (2020) Feasibility of vaccination against Macrobrachium rosenbergii nodavirus infection in giant freshwater prawn. Fish and Shellfish Immunology, 104. pp. 431-438.

Vu, Nga T.T., Zenger, Kyall R., Guppy, Jarrod L., Sellars, Melony J., Nunes Soares Silva, Catarina N.S., Kjeldsen, Shannon R., and Jerry, Dean R. (2020) Fine-scale population structure and evidence for local adaptation in Australian giant black tiger shrimp (Penaeus monodon) using SNP analysis. BMC Genomics, 21. 669.

Noble, Tansyn N., Coman, Gregory J., Wade, Nicholas M., Thomson, Peter C., Raadsma, Herman W., Khatkar, Mehar S., Guppy, Jarrod L., and Jerry, Dean R. (2020) Genetic parameters for tolerance to gill-associated virus under challenge-test conditions in the black tiger shrimp (Penaeus monodon). Aquaculture, 516. 734428.

Noble, Tansyn H., Coman, Gregory J., Wade, Nicholas M., Thomson, Peter, Raadsma, Herman W., Khatkar, Mehar S., Guppy, Jarrod L., and Jerry, Dean R. (2020) Genetic parameters of Gill-associated virus infection and body weight under commercial conditions in black tiger shrimp, Penaeus monodon. Aquaculture, 528. 735580.

Sukhavachana, Sila, Tongyoo, Pumipat, Massault, Cecile, McMillan, Nichanun, Leungnaruemitchai, Amorn, and Poompuang, Supawadee (2020) Genome-wide association study and genomic prediction for resistance against Streptococcus agalactiae in hybrid red tilapia (Oreochromis spp.). Aquaculture, 525. 735297.

Dam, Chinh Thi My, Ventura, Tomer, Booth, Mark, Pirozzi, Igor, Salini, Michael, Smullen, Richard, and Elizur, Abigail (2020) Intestinal transcriptome analysis highlights key differentially expressed genes involved in nutrient metabolism and digestion in yellowtail kingfish (Seriola lalandi) fed terrestrial animal and plant proteins. Genes, 11 (6). 621.

Harohau, Daykin, Blythe, Jessica, Sheaves, Marcus, and Diedrich, Amy (2020) Limits of tilapia aquaculture for rural livelihoods in the Solomon Islands. Sustainability, 12. 4592.

Kinley, Robert D., Martinez-Fernandez, Gonzalo, Matthews, Melissa K., de Nys, Rocky, Magnusson, Marie, and Tomkins, Nigel W. (2020) Mitigating the carbon footprint and improving productivity of ruminant livestock agriculture using a red seaweed. Journal of Cleaner Production, 259.

Skilton, Dylan C., Saunders, Richard J., and Hutson, Kate S. (2020) Parasite attractants: identifying trap baits for parasite management in aquaculture. Aquaculture, 516. 734557.

Chen, Jun Yu, Zeng, Chaoshu, Jerry, Dean R., and Cobcroft, Jennifer M. (2020) Recent advances of marine ornamental fish larviculture: broodstock reproduction, live prey and feeding regimes, and comparison between demersal and pelagic spawners. Reviews in Aquaculture, 12 (3). pp. 1518-1541.

Shi, Wenyuan, Liu, Fang, Liu, An, Huang, Huiyang, Lin, Qi, Zeng, Chaoshu, and Ye, Haihui (2020) Roles of gonad-inhibiting hormone in the protandric simultaneous hermaphrodite peppermint shrimp. Biology of Reproduction, 103 (4). pp. 817-827.

Neveux, Nicolas, Nugroho, A.A., Roberts, D.A., Vucko, M.J., and de Nys, R. (2020) Selecting extraction conditions for the production of liquid biostimulants from the freshwater macroalga Oedogonium intermedium. Journal of Applied Phycology, 32. pp. 539-551.

Hair, Cathy, Foale, Simon, Daniels, Nicholas, Minimulu, Peter, Aini, John, and Southgate, Paul C. (2020) Social and economic challenges to community-based sea cucumber mariculture development in New Ireland Province, Papua New Guinea. Marine Policy, 117. 103940.

Shao, Luchang, and Zeng, Chaoshu (2020) Survival, growth, ingestion rate and foraging behavior of larval green mandarin fish (Synchiropus splendidus) fed copepods only versus co-fed copepods with rotifers. Aquaculture, 520. 734958.

Noordin, Noordiyana M., Zeng, Chaoshu, and Southgate, Paul C. (2020) Survival, molting pattern, and growth of early blue swimmer crab, Portunus pelagicus, juveniles fed diets containing varying levels of cholesterol. Journal of the World Aquaculture Society, 51. pp. 255-265.

Vij, Shubha, Purushothanman, Kathiresan, Sridatta, Prakki Sai Rama, and Jerry, Dean R. (2020) Transcriptomic analysis of gill and kidney from Asian seabass (Lates calcarifer) acclimated to different salinities reveals pathways involved with euryhalinity. Genes, 11 (7). 733.

Mangott, A., Nappi, J., Delli Paoli Carini, A., Goncalves, P., Hua, K., Domingos, J.A., de Nys, R., and Thomas, T. (2020) Ulva lactuca as a functional ingredient and water bioremediator positively influences the hepatopancreas and water microbiota in the rearing of Litopenaeus vannamei. Algal Research, 51. 102040.

Harohau, Daykin, Blythe, Jessica, Sheaves, Marcus, and Diedrich, Amy (2020) Uneven adoption of tilapia aquaculture in rural Solomon Islands. Aquaculture International, 28. pp. 2093-2109.

Magnusson, Marie, Vucko, Matthew J., Neoh, Tze Loon, and de Nys, Rocky (2020) Using oil immersion to deliver a naturally-derived, stable bromoform product from the red seaweed Asparagopsis taxiformis. Algal Research, 51. 102065.

Navarro, Alejandro, Young, Mary, Allan, Blake, Carnell, Paul, Macreadie, Peter, and Ierodiaconou, Daniel (2020) The application of Unmanned Aerial Vehicles (UAVs) to estimate above-ground biomass of mangrove ecosystems. Remote Sensing of Environment, 242. 111747.

Onomu, Abigail J., Vine, Niall G., Cyrus, Mark D., Macey, Brett M., and Bolton, John J. (2020) The effect of fresh seaweed and a formulated diet supplemented with seaweed on the growth and gonad quality of the collector sea urchin, Tripneustes gratilla, under farm conditions. Aquaculture Research, 51 (10). pp. 4087-4102.

Tandiono, Tandiono, Kang, Chang Wei, Lu, Xin, Turangan, Cary K., Tan, Matthew, Bin Osman, Hafiiz, and Lim, Fannon (2020) An experimental study of gas nuclei-assisted hydrodynamic cavitation for aquaculture water treatment. Journal of Visualization, 23 (5). pp. 863-872.

Jones, David B., Nguyen, Huu, Khatkar, Mehar, Simma, David, Jerry, Dean, Raadsma, Herman, Van Der Steen, Hein, Prochaska, Jeffrey, and Zenger, Kyall (2020) The identification of a major sex QTL in the white-leg shrimp, Litopenaeus vannamei. Aquaculture, 529. 735673.

Loh, Jiun Yan, Chan, Hor Kuan, Yam, Hok Chai, In, Lionel Lian Aun, and Lim, Crystale Siew Ying (2020) An overview of the immunomodulatory effects exerted by probiotics and prebiotics in grouper fish. Aquaculture International, 28. pp. 729-750.

Rigg, Damian, Seymour, Jamie E., Courtney, Robert L., and Jones, Clive M. (2020) A review of juvenile redclaw crayfish Cherax quadricarinatus (von Martens, 1898) Aquaculture: global production practices and innovation. Freshwater Crayfish, 25 (1). pp. 13-30.

Mousavi, Seyedehlaleh, Zahedinezhad, Somayeh, and Loh, Jiun Yan (2020) A review on insect meals in aquaculture: the immunomodulatory and physiological effects. International Aquatic Research, 12. pp. 100-115.

Hua, Katheline, and Bureau, Dominique (2019) Estimating changes in essential amino acid requirements of rainbow trout and Atlantic salmon as a function of body weight or diet composition using a novel factorial requirement model. Aquaculture, 513. 733440.

Zenger, Kyall R., Khatkar, Mehar S., Jones, David B., Khalilisamani, Nima, Jerry, Dean R., and Raadsma, Herman W. (2019) Genomic selection in aquaculture: application, limitations and opportunities with special reference to marine shrimp and pearl oysters. Frontiers in Genetics, 9. 693.

Dam, Chinh T.M., Elizur, Abigail, Ventura, Tomer, Salini, Michael, Smullen, Richard, Pirozzi, Igor, and Booth, Mark (2019) Apparent digestibility of raw materials by yellowtail kingfish (Seriola lalandi). Aquaculture, 511. 734233.

Infante-Villamil, Sandra, Huerlimann, Roger, Condon, Kelly, Maes, Gregory E., and Jerry, Dean R. (2019) Bacterial signatures of productivity decay in Penaeus monodon ponds infected with PirA toxin. Aquaculture, 511. 734202.

Foote, Andrew, Simma, David, Khatkar, Mehar, Raadsma, Herman, Guppy, Jarrod, Coman, Gregory, Giardina, Erika, Jerry, Dean, Zenger, Kyall, and Wade, Nicholas (2019) Considerations for maintaining family diversity in commercially mass-spawned penaeid shrimp: a case study on Penaeus monodon. Frontiers in Genetics, 10. 1127.

Liu, Angela, Pirozzi, Igor, Codabaccus, Basseer, Hines, Barney, Simon, Cedric, Sammut, Jesmond, and Booth, Mark (2019) Digestible choline requirement of juvenile yellowtail kingfish (Seriola lalandi). Aquaculture, 509. pp. 209-220.

Hua, Katheline, Suwendi, Erwin, and Bureau, Dominique P. (2019) Effect of body weight on lysine utilization efficiency in Nile Tilapia (Oreochromis niloticus). Aquaculture, 505. pp. 47-53.

Liu, Meimei, Wang, Lin, Cheng, Yongxu, Gong, Jie, Zeng, Chaoshu, and Wu, Xugan (2019) Effect of estradiol on hepatopancreatic lipid metabolism in the swimming crab, Portunus trituberculatus. General and Comparative Endocrinology, 280. pp. 115-122.

Long, Xiaowen, Wu, Renfu, Wu, Xugan, Hou, Wenjie, Pan, Guiping, Zeng, Chaoshu, and Cheng, Yongxu (2019) Effects of dietary fish oil replacement with blended vegetable oils on growth, lipid metabolism and antioxidant capacity of subadult swimming crab Portunus trituberculatus. Aquaculture Nutrition, 25 (6). pp. 1218-1230.

Hua, Katheline, Koppe, Wolfgang, and Fontanillas, Ramon (2019) Effects of dietary protein and lipid levels on growth, body composition and nutrient utilization of Channa striata. Aquaculture, 501. pp. 368-373.

Jiang, Jufeng, Nuez Ortin, Waldo, Angell, Alex, Zeng, Chaoshu, de Nys, Rocky, and Vucko, Matthew (2019) Enhancing the colouration of the marine ornamental fish Pseudochromis fridmani using natural and synthetic sources of astaxanthin. Algal Research, 42. 101596.

Magnusson, Marie, Glasson, Christopher R.K., Vucko, Matthew J., Angell, Alex, Neoh, Tze Loon, and de Nys, Rocky (2019) Enrichment processes for the production of high-protein feed from the green seaweed Ulva ohnoi. Algal Research, 41. 101555.

Berry, Sarah E., Wade, Nicholas, Cedric, Simon, Foote, Andrew, Jerry, Dean R., and Wade, Nicholas M. (2019) Evaluation of baseline haemolymph biochemistry, volume and total body energetics to determine an accurate condition index in the black tiger shrimp, Penaeus monodon. Comparative Biochemistry and Physiology-Part B: biochemistry & molecular biology, 228. pp. 1-9.

Chong, Wai-Wei, Lim, Crystale Siew-Ying, Lai, Kok-Song, and Loh, Jiun-Yan (2019) In vitro antimicrobial assessment on lactic acid bacteria isolated from common freshwater fishes. Asia Pacific Journal of Molecular Biology and Biotechnology, 27 (2). pp. 18-25.

Praeger, Christina, Vucko, Matthew J., de Nys, Rocky, and Cole, Andrew (2019) Maximising the productivity of the attached cultivation of Ulva tepida in land-based systems. Algal Research, 40. 101507.

Nowland, Samantha J., Silva, Catarina N.S., Southgate, Paul C., and Strugnell, Jan M. (2019) Mitochondrial and nuclear genetic analyses of the tropical black-lip rock oyster (Saccostrea echinata) reveals population subdivision and informs sustainable aquaculture development. BMC Genomics, 20. 711.

Xu, Tian, Zeng, Chaoshu, and Hutson, Kate S. (2019) Morphological descriptions of the larval and first juvenile stages of the decorator crab Camposcia retusa (Latreille, 1829) from laboratory-reared material. Zootaxa, 4577 (2). pp. 295-315.

Glasson, Christopher R.K., Donnet, Luke, Angell, Alex, Vucko, Matthew J., Lorbeer, Andrew J., Vamvounis, George, de Nys, Rocky, and Magnusson, Marie (2019) Multiple response optimisation of the aqueous extraction of high quality ulvan from Ulva ohnoi. Bioresource Technology Reports, 7. 100262.

Chen, Daming, Liu, Fang, Zhu, Zhihuang, Lin, Qi, Zeng, Chaoshu, and Ye, Haihui (2019) Ontogenetic development of gonads and external sexual characters of the protandric simultaneous hermaphrodite peppermint shrimp, Lysmata vittata (Caridea: Hippolytidae). PLoS ONE, 14 (4). e0215406.

Gomes, Giana Bastos, Hutson, Kate S., Domingos, Jose A., Infante Villamil, Sandra, Huerlimann, Roger, Miller, Terrence L., and Jerry, Dean (2019) Parasitic protozoan interactions with bacterial microbiome in a tropical fish farm. Aquaculture, 502. pp. 196-201.

Trasvina-Moreno, A.G., Ascencio, F., Angulo, C., Hutson, K.S., Aviles-Quevedo, A., Inohuye-Rivera, R.B., and Perez-Urbiola, J.C. (2019) Plant extracts as a natural treatment against the fish ectoparasite Neobenedenia sp. (Monogenea: Capsalidae). Journal of Helminthology, 93 (1). pp. 57-65.

Loughnan, Shannon R., Smith-Keune, Carolyn, Beheregaray, Luciano B., Robinson, Nicholas A., and Jerry, Dean R. (2019) Population genetic structure of barramundi (Lates calcarifer) across the natural distribution range in Australia informs fishery management and aquaculture practices. Marine and Freshwater Research, 70. pp. 1533-1542.

Huang, Huiyang, Huang, Chencui, Guo, Limei, Zeng, Chaoshu, and Ye, Haihui (2019) Profiles of calreticulin and Ca2+ concentration under low temperature and salinity stress in the mud crab, Scylla paramamosain. PLoS One, 14 (7). e0220405.

Pirozzi, Igor, Benito, Marina Rubio, and Booth, Mark (2019) Protein, amino acid and energy utilisation of juvenile Yellowtail Kingfish (Seriola lalandi): quantifying abiotic influences. Aquaculture, 513. 734439.

Hilder, Pollyanna E., Battaglene, Stephen C., Hart, Nathan S., Collin, Shaun P., and Cobcroft, Jennifer M. (2019) Retinal adaptations of southern bluefin tuna larvae: implications for culture. Aquaculture, 507. pp. 222-232.

Long, Xiaowen, Wu, Xugan, Zhu, Shaicheng, Ye, Haihui, Cheng, Yongxu, and Zeng, Chaoshu (2019) Salinity can change the lipid composition of adult Chinese mitten crab after long-term salinity adaptation. PLoS ONE, 14 (7). e0219260.

Diedrich, Amy, Blythe, Jessica, Petersen, Elizabeth, Euriga, Epsi, Fatchiya, Anna, Shimada, Takahiro, and Jones, Clive (2019) Socio-economic drivers of adoption of small-scale aquaculutre in Indonesia. Sustainability, 11 (6). 1543.

Haller-Bull, Vanessa, and Bode, Michael (2019) Superadditive and subadditive dynamics are not inherent to the types of interacting threat. PLoS ONE, 14 (8). e0211444.

Liu, Meimei, Feng, Qiangmei, Francis, David S., Turchini, Giovanni M., Zeng, Chaoshu, and Wu, Xugan (2019) Tamoxifen affects the histology and hepatopancreatic lipid metabolism of swimming crab Portunus trituberculatus. Aquatic Toxicology, 213. 105220.

Rusaini, and Owens, Leigh (2019) The effect of viral infection on the relationship between the LOS cells and moulting stages of the black tiger prawn (Penaeus monodon). Aquaculture, Aquarium, Conservation and Legislation, 12 (4). pp. 1087-1101.

Hua, Katheline, Cobcroft, Jennifer M., Cole, Andrew, Condon, Kelly, Jerry, Dean R., Mangott, Arnold, Praeger, Christina, Vucko, Matthew J., Zeng, Chaoshu, Zenger, Kyall, and Strugnell, Jan M. (2019) The future of aquatic protein: implications for protein sources in aquaculture diets. One Earth, 1 (3). pp. 316-329.

Marchese, Gioele, Fitzgibbon, Quinn P., Trotter, Andrew J., Carter, Chris G., Jones, Clive M., and Smith, Gregory G. (2019) The influence of flesh ingredients format and krill meal on growth and feeding behaviour of juvenile tropical spiny lobster Panulirus ornatus. Aquaculture, 499. pp. 128-139.

Barton, Jonathan A., Hutson, Kate S., Bourne, David G., Humphrey, Craig, Dybala, Cat, and Rawlinson, Kate A. (2019) The life cycle of the Acropora coral-eating flatworm (AEFW), Prosthiostomum acroporae; the influence of temperature and management guidelines. Frontiers in Marine Science, 6. 524.

Tan, Cheryl K.Y., Cowley, Jeff A., and Jerry, Dean R. (2019) A magnetic bead-based DNA extraction protocol suitable for high-throughput genotyping in shrimp breeding programs. Genetics of Aquatic Organisms, 3 (2). pp. 47-56.

Liu, An, Liu, Jing, Chen, Xuelei, Lu, Bei, Zeng, Chaoshu, and Ye, Haihui (2019) A novel crustacean hyperglycemic hormone (CHH) from the mud crab Scylla paramamosain regulating carbohydrate metabolism. Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 231. pp. 49-55.

Cyrus, Mark D., Bolton, John J., and Macey, Brett M. (2019) The use of stable isotope ratios δ 13 C and δ 15 N to track the incorporation of Ulva and other important dietary ingredients into the gonads of the sea urchin Tripneustes gratilla. Aquaculture Nutrition, 26 (1). pp. 174-185.

Konovalov, Dmitry A., Saleh, Alzayat, Domingos, Jose A., White, Ron D., and Jerry, Dean R. (2018) Estimating mass of harvested Asian seabass Lates calcarifer from images. World Journal of Engineering and Technology, 6 (3). pp. 15-23.

Praeger, Christina, and de Nys, Rocky (2018) Improvement of the seeding of filamentous Ulva tepida on free-floating surfaces. Algal Research, 30. pp. 73-78.

Long, Xiaowen, Wu, Xugan, Zhao, Lei, Ye, Haihui, Cheng, Yongxu, and Zeng, Chaoshu (2018) Physiological responses and ovarian development of female Chinese mitten crab Eriocheir sinensis subjected to different salinity conditions. Frontiers in Physiology, 8. 1072.

Hutson, Kate, Cable, Joanne, Grutter, Alexandra S., Paziewska-Harris, Anna, and Barber, Iain (2018) Aquatic parasite cultures and their applications. Trends in Parasitology, 34 (12). pp. 1082-1096.

Li, Xixi, Norman, Hayley C., Kinley, Robert D., Laurence, Michael, Wilmot, Matt, Bender, Hannah, de Nys, Rocky, and Tomkins, Nigel (2018) Asparagopsis taxiformis decreases enteric methane production from sheep. Animal Production Science, 58 (4). pp. 681-688.

Marshall, Dustin J., Lawton, Rebecca J., Monro, Keyne, and Paul, Nicholas A. (2018) Biochemical evolution in response to intensive harvesting in algae: evolution of quality and quantity. Evolutionary Applications, 11 (8). pp. 1389-1400.

Loh, Jiun Yan, Kay, Gemma L., and Ting, Adeline Su Yien (2018) Bioencapsulation and Colonization Characteristics of Lactococcus lactis subsp. lactis CF4MRS in Artemia franciscana: a Biological Approach for the Control of Edwardsiellosis in Larviculture. Marine Biotechnology, 20. pp. 353-362.

Roberts, David A., Shiels, Laura, Tickle, Julian, de Nys, Rocky, and Paul, Nicholas A. (2018) Bioremediation of aluminium from the waste water of a conventional water treatment plant using the freshwater macroalga Oedogonium. Water, 10 (5). 626.

Genodepa, Jerome G., Zeng, Chaoshu, and Southgate, Paul C. (2018) Changes in digestive enzyme activities and nutrient utilization during embryonic development and starvation of newly hatched larvae of the mud crab, Scylla serrata. Aquaculture, 493. pp. 137-143.

Purcell, Steven W., Williamson, David H., and Ngaluafe, Poasi (2018) Chinese market prices of beche-de-mer: implications for fisheries and aquaculture. Marine Policy, 91. pp. 58-65.

Vaughan, David B., Grutter, Alexandra S., and Hutson, Kate S. (2018) Cleaner shrimp are a sustainable option to treat parasitic disease in farmed fish. Scientific Reports, 8. 13959. pp. 1-10.

Vaughan, David B., Grutter, Alexandra S., and Hutson, Kate S. (2018) Cleaner shrimp remove parasite eggs on fish cages. Aquaculture Environment Interactions, 10. pp. 429-436.

Chen, Zhigang, Wang, Guizhong, Zeng, Chaoshu, and Wu, Lisheng (2018) Comparative study on the effects of two diatoms as diets on planktonic calanoid and benthic harpacticoid copepods. Journal of Experimental Zoology, Part A, 329 (3). pp. 140-148.

Sakuna, Kitikarn, Elliman, Jennifer, and Owens, Leigh (2018) Comparison of molecular detection PCR methods for chequa iflavirus in freshwater crayfish, Cherax quadricarinatus. Journal of Virological Methods, 251. pp. 139-144.

Brazenor, Alexander K.,, Bertozzi, Terry, Miller, Terrence L., Whittington, Ian D., and Hutson, Kate S. (2018) DNA profiling reveals Neobenedenia girellae as the primary culprit in global fisheries and aquaculture. Molecular Phylogenetics and Evolution, 129. pp. 130-137.

Huerlimann, Roger, Wade, Nicholas M., Gordon, Lavinia, Montenegro, Juan D., Goodall, Jake, McWilliam, Sean, Tinning, Matthew, Siemering, Kirby, Giardina, Erika, Donovan, Dallas, Sellars, Melony J., Cowley, Jeff A., Condon, Kelly, Coman, Greg J., Khatkar, Mehar S., Raadsma, Herman W., Maes, Gregory E., Zenger, Kyall R., and Jerry, Dean R. (2018) De novo assembly, characterization, functional annotation and expression patterns of the black tiger shrimp (Penaeus monodon) transcriptome. Scientific Reports, 8. 13553.

Syafrizal, Syafrizal, Jones, Clive M., Permana, Idat G., and Utomo, Nur Bambang P. (2018) Effect of feeding frequency on survival and growth of juvenile spiny lobster Panulirus versicolor in Indonesia. Aquaculture, Aquarium, Conservation and Legislation, 11 (5). pp. 1427-1434.

Li, Ming, Wang, Runqiu, Gomes, Giana Bastos, Zou, Hong, Li, Wen-xiang, Wu, Shan-gong, Wang, Gui-tang, and Ponce-Gordo, Francisco (2018) Epidemiology and identification of two species of Chilodonella affecting farmed fishes in China. Veterinary Parasitology, 264. pp. 8-17.

Cole, Andrew, Praeger, Christina, Mannering, Thomas, de Nys, Rocky, and Magnusson, Marie (2018) Hot and bright: thermal and light environments for the culture of Oedogonium intermedium and the geographical limits for large-scale cultivation in Australia. Algal Research, 34 (2018). pp. 209-216.

Cabral, Reniel B., and Geronimo, Rollan C. (2018) How important are coral reefs to food security in the Philippines? Diving deeper than national aggregates and averages. Marine Policy, 91. pp. 136-141.

Bao, Chenchang, Yang, Yanan, Zeng, Chaoshu, Huang, Huiyang, and Ye, Haihui (2018) Identifying neuropeptide GPCRs in the mud crab, Scylla paramamosain, by combinatorial bioinformatics analysis. General and Comparative Endocrinology, 269. pp. 122-130.

Yasumaru, Fanny A., De Maesschalck, Celine, Wouters, Roeland, and Lemos, Daniel (2018) In vitro degree of protein hydrolysis using enzyme extracts from larval and postlarval Litopenaeus vannamei (Boone). Aquaculture Research, 49 (12). pp. 3933-3937.

Hair, Cathy A., Ram, Ravinesh, and Southgate, Paul C. (2018) Is there a difference between bêche-de-mer processed from ocean-cultured and wild-harvested sandfish (Holothuria scabra)? Aquaculture, 483. pp. 63-68.

Noble, T.H., Stratford, C.N., Wade, N., Cowley, J.A., Sellars, M.J., Coman, G.J., and Jerry, D.R. (2018) PCR testing of single tissue samples can result in misleading data on gill-associated virus infection loads in shrimp. Aquaculture, 492. pp. 91-96.

do Prado, Fernanda Dotti, Vera, Manuel, Hermida, Miguel, Bouza, Carmen, Pardo, Belén G., Vilas, Román, Blanco, Andrés, Fernández, Carlos, Maroso, Francesco, Maes, Gregory E., Turan, Cemal, Volckaert, Filip A.M., Taggart, John B., Carr, Adrian, Ogden, Rob, Nielsen, Einar Eg, Aquatrace, Consortium, and Martínez, Paulino (2018) Parallel evolution and adaptation to environmental factors in a marine flatfish: implications for fisheries and aquaculture management of the turbot (Scophthalmus maximus). Evolutionary Applications, 11 (8). pp. 1322-1341.

Xu, Xiaojun, Wang, Guizhong, Zeng, Chaoshu, and Li, Shaojing (2018) Parentage determination of the mud crab Scylla paramamosain using microsatellite markers. Aquaculture Research, 49 (1). pp. 217-221.

Foote, A.R., Stratford, C.N., and Coman, G.J. (2018) Passive integrated transponder (PIT) tagging black tiger shrimp, Penaeus monodon: Applications for breeding programs. Aquaculture, 491. pp. 321-324.

Jones, Clive (2018) Progress and obstacles in establishing rock lobster aquaculture in Indonesia. Bulletin of Marine Science, 94 (3). pp. 1223-1233.

Noordin, Noordiyana Mat, Zeng, Chaoshu, and Southgate, Paul C. (2018) Progress in diet development for blue swimmer crab, Portunus pelagicus, juveniles: effect of dietary phospholipid on survival, development, growth and resistance to osmotic shock. Aquaculture Nutrition, 24 (6). pp. 1834-1844.

Zamora, Leonardo Nicolas, Yuan, Xiutang, Carton, Alexander Guy, and Slater, Matthew James (2018) Role of deposit‐feeding sea cucumbers in integrated multitrophic aquaculture: progress, problems, potential and future challenges. Reviews in Aquaculture, 10 (1). pp. 57-74.

Domingos, Jose A., Budd, Alyssa M., Banh, Quyen Q., Goldsbury, Julie A., Zenger, Kyall R., and Jerry, Dean R. (2018) Sex-specific dmrt1 and cyp19a1 methylation and alternative splicing in gonads of the protandrous hermaphrodite barramundi. PLoS ONE, 13 (9). e0204182.

Sakuna, Kitikarn, Elliman, Jennifer, and Owens, Leigh (2018) Therapeutic trials against pre-existing Chequa iflavirus in redclaw crayfish (Cherax quadricarinatus). Aquaculture, 492. pp. 9-14.

Zhang, Rui, Yuen, Alexander K.L., Magnusson, Marie, Wright, Jeffrey T., de Nys, Rocky, Masters, Anthony F., and Maschmeyer, Thomas (2018) A comparative assessment of the activity and structure of phlorotannins from the brown seaweed Carpophyllum flexuosum. Algal Research, 29. pp. 130-141.

Angell, Alex, de Nys, Rocky, Mangott, Arnold, and Vucko, Matthew J. (2018) The effects of concentration and supplementation time of natural and synthetic sources of astaxanthin on the colouration of the prawn Penaeus monodon. Algal Research, 35. pp. 577-585.

Zeng, Chaoshu, Shao, Luchang, Ricketts, Amanda, and Moorhead, Jonathan (2018) The importance of copepods as live feed for larval rearing of the green mandarin fish Synchiropus splendidus. Aquaculture, 491. pp. 65-71.

Praeger, Christina, and de Nys, Rocky (2018) A new dimension in algal cultivation – 3D printed structures with a range of buoyancies. Algal Research, 36. pp. 209-216.

Sakuna, Kitikarn, Elliman, Jennifer, Tzamouzaki, Anna, and Owens, Leigh (2018) A novel virus (order Bunyavirales) from stressed redclaw crayfish (Cherax quadricarinatus) from farms in northern Australia. Virus Research, 250. pp. 7-12.

Guppy, Jarrod L., Jones, Dave B., Jerry, Dean R., Wade, Nicholas M., Raadsma, Herman W., Huerlimann, Roger, and Zenger, Kyall R. (2018) The state of "omics" research for farmed penaeids: advances in research and impediments to industry utilization. Frontiers in Genetics, 9. 282.

Shiel, Brett P., Hall, Nathan E., Cooke, Ira R., Robinson, Nicholas A., Stone, David A.J., and Strugnell, Jan M. (2017) The effect of commercial, natural and grape seed extract supplemented diets on gene expression signatures and survival of greenlip abalone (Haliotis laevigata) during heat stress. Aquaculture, 479. pp. 798-807.

Castanho, S., Califano, G., Soares, F., Costa, R., Mata, L., Pousão-Ferreira, P., and Ribeiro, L. (2017) The effect of live feeds bathed with the red seaweed Asparagopsis armata on the survival, growth and physiology status of Sparus aurata larvae. Fish Physiology and Biochemistry, 43 (4). pp. 1043-1054.

Long, Xiaowen, Wu, Xugan, Zhao, Lei, Ye, Haihui, Cheng, Yongxu, and Zeng, Chaoshu (2017) Effects of salinity on gonadal development, osmoregulation and metabolism of adult male Chinese mitten crab, Eriocheir sinensis. PLoS ONE, 12 (6). e0179036. pp. 1-19.

Lawton, Rebecca J., Paul, Nicholas A., Marshall, Dustin J., and Monro, Keyne (2017) Limited evolutionary responses to harvesting regime in the intensive production of algae. Journal of Applied Phycology, 29 (3). pp. 1449-1459.

Bastos Gomes, G., Jerry, D.R., Miller, T.L., and Hutson, K.S. (2017) Current status of parasitic ciliates Chilodonella spp. (Phyllopharyngea: Chilodonellidae) in freshwater fish aquaculture. Journal of Fish Diseases, 40 (5). pp. 703-715.

Duy, Nguyen Dinh Quang, Francis, David S., and Southgate, Paul C. (2017) The nutritional value of live and concentrated micro-algae for early juveniles of sandfish, Holothuria scabra. Aquaculture, 473. pp. 97-104.

Bastos Gomes, Giana, Miller, Terrence L., Vaughan, David B., Jerry, Dean R., McCowan, Christina, Bradley, Tracey L., and Hutson, Kate S. (2017) Evidence of multiple species of Chilodonella (Protozoa, Ciliophora) infecting Australian farmed freshwater fishes. Veterinary Parasitology, 237. pp. 8-16.

Angell, Alex R., Paul, Nicholas A., and de Nys, Rocky (2017) A comparison of protocols for isolating and concentrating protein from the green seaweed Ulva ohnoi. Journal of Applied Phycology, 29 (2). pp. 1011-1026.

Romano, Nicholas, and Zeng, Chaoshu (2017) Cannibalism of decapod crustaceans and implications for their aquaculture: a review of its prevalence, influencing factors, and mitigating methods. Reviews in Fisheries Science & Aquaculture, 25 (1). pp. 42-69.

Califano, Gianmaria, Castanho, Sara, Soares, Florbela, Ribeiro, Laura, Cox, Cymon J., Rodrigues da Mata, Leonardo, and Costa, Rodrigo (2017) Molecular taxonomic profiling of bacterial communities in a gilthead seabream (Sparus aurata) hatchery. Frontiers In Microbiology, 8. 204.

Chang, Gouliang, Wu, Xugan, Cheng, Yongxu, Zeng, Chaoshu, and Yu, Zhiyong (2017) Reproductive performance, offspring quality, proximate and fatty acid composition of normal and precocious Chinese mitten crab Eriocheir sinensis. Aquaculture, 469. pp. 137-143.

Olaganathan, Rajee, and Kar Mun, Alicia Tang (2017) Assessing the efficiency of different sustainable farming practices in reducing the environmental impacts caused by aquaculture. International Journal of Advanced Biotechnology and Research, 8 (1). 39. pp. 305-314.

Loh, J.Y., Lim, Y.Y., and Ting, A.S.Y. (2017) Bacteriocin-like substances produced by Lactococcus lactis subsp. lactis CF4MRS isolated from fish intestine: Antimicrobial activities and inhibitory properties. International Food Research Journal, 24 (1). pp. 394-400.

Munksgaard, Niels C., Burchert, Shannon, Kaestli, Mirjam, Nowland, Samantha J., O'Connor, Wayne, and Gibb, Karen S. (2017) Cadmium uptake and zinc-cadmium antagonism in Australian tropical rock oysters: potential solutions for oyster aquaculture enterprises. Marine Pollution Bulletin, 123 (1-2). pp. 47-56.

Malara, Danilo, Hoj, Lone, Heimann, Kirsten, Citarrella, Gabriella, and Oelgemoeller, Michael (2017) Capacity of cationic and anionic porphyrins to inactivate the potential aquaculture pathogen Vibrio campbellii. Aquaculture, 473. pp. 228-236.

Noble, T.H., Coman, G.J., Cowley, J.A., Wade, N., Sellars, M., and Jerry, D.R. (2017) Comparison of methods for uniformly challenging Black Tiger shrimp (Penaeus monodon) with gill-associated virus. Aquaculture, 473. pp. 191-196.

Barton, Jonathan A., Willis, Bette L., and Hutson, Kate S. (2017) Coral propagation: a review of techniques for ornamental trade and reef restoration. Reviews in Aquaculture, 9 (3). pp. 238-256.

Ram, Ravinesh, Chand, Roveena V., Forrest, Andrew, and Southgate, Paul C. (2017) Effect of processing method on quality, texture, collagen and amino acid composition of sandfish (Holothuria scabra). LWT - Food Science and Technology, 86. pp. 261-269.

Wang, Guizhong, Xu, Jie, Jia, Qilong, Zeng, Chaoshu, Wu, Lisheng, and Wu, Dingxun (2017) Effects of microalgae as diets on the survival, development and fecundity of a pelagic cyclopoid copepod Apocyclops borneoensis. Journal of the Marine Biological Association of the United Kingdom, 97 (6). pp. 1251-1257.

Wu, Xugan, Zeng, Chaoshu, and Southgate, Paul C. (2017) Effects of starvation on survival, biomass, and lipid composition of newly hatched larvae of the blue swimmer crab, Portunus pelagicus (Linnaeus, 1758). Aquaculture International, 25 (1). pp. 447-461.

Nowland, Samantha J., Southgate, Paul C., Basiita, Rose K., and Jerry, Dean R. (2017) Elucidation of fine-scale genetic structure of sandfish (Holothuria scabra) populations in Papua New Guinea and northern Australia. Marine and Freshwater Research, 68 (10). pp. 1901-1911.

Moorhead, Jonathan A., and Zeng, Chaoshu (2017) Establishing larval feeding regimens for the Forktail Blenny Meiacanthus atrodorsalis (Gunther, 1877): effects of Artemia strain, time of prey switch and co-feeding period. Aquaculture Research, 48 (8). pp. 4321-4333.

Hillen, J.E.J., Coscia, I., Vandeputte, M., Herten, K., Hellemans, B., Maroso, F., Vergnet, A., Allal, F., Maes, Gregory, and Volckaert, F.A.M. (2017) Estimates of genetic variability and inbreeding in experimentally selected populations of European sea bass. Aquaculture, 479. pp. 742-749.

Hilder, Pollyanna E., Cobcroft, Jennifer M., and Battaglene, Stephen C. (2017) Factors affecting the feeding response of larval southern bluefin tuna, Thunnus maccoyii (Castelnau, 1872). Aquaculture Research, 48 (6). pp. 2752-2766.

Cole, Andrew J., Paul, Nicholas, De Nys, Rocky, and Roberts, David A. (2017) Good for sewage treatment and good for agriculture: algal based compost and biochar. Journal of Environmental Management, 200. pp. 105-113.

Olaganathan, Rajee, and Kar Mun, Alicia Tang (2017) Impact of aquaculture on the livelihoods and food security of rural communities. International Journal of Fisheries and Aquatic Studies, 5 (2). 5-1-81-919. pp. 278-283.

Priyambodo, Bayu, Jones, Clive M., and Sammut, Jesmond (2017) Improved collector design for the capture of tropical spiny lobster, Panulirus homarus and P-ornatus (Decapoda: Palinuridae), pueruli in Lombok, Indonesia. Aquaculture, 479. pp. 321-332.

Joffre, O.M., Castine, S.A., Phillips, M.J., Sellamuttu, S.Senaratna, Chandrabalan, D., and Cohen, P. (2017) Increasing productivity and improving livelihoods in aquatic agricultural systems: a review of interventions. Food Security, 9 (1). pp. 39-60.

Banh, Quyen Q., Domingos, Jose A., Zenger, Kyall R., and Jerry, Dean R. (2017) Morphological changes and regulation of the genes dmrt1 and cyp11b during the sex differentiation of barramundi (Lates calcarifer Bloch). Aquaculture, 479. pp. 75-84.

Syahidah, D., Elliman, J., Constantinoiu, C., and Owens, L. (2017) Mosquito cells (C6/36) fail to support the complete replication of Penaeus merguiensis hepandensovirus. Journal of Invertebrate Pathology, 145. pp. 31-38.

Budd, Alyssa M., Hinton, Tracey M., Tonks, Mark, Cheers, Sue, and Wade, Nicholas M. (2017) Rapid expansion of pigmentation genes in penaeid shrimp with absolute preservation of function. The Journal of Experimental Biology, 220. pp. 4109-4118.

Praeger, Christina, and de Nys, Rocky (2017) Seeding filamentous Ulva tepida on free-floating surfaces: a novel cultivation method. Algal Research, 24 (Part A). pp. 81-88.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., Bosserelle, Cyprien, and Zenger, Kyall R. (2017) Swept away: ocean currents and seascape features influence genetic structure across the 18,000 Km Indo-Pacific distribution of a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera. BMC Genomics, 18. 66. pp. 1-21.

Nuez-Ortin, Waldo G., Carter, Chris G., Wilson, Richard, Cooke, Ira R., Amoroso, Gianluca, Cobcroft, Jennifer M., and Nichols, Peter D. (2017) Triploid Atlantic salmon shows similar performance, fatty acid composition and proteome response to diploids during early freshwater rearing. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 22. pp. 67-77.

Bastos Gomes, Giana, Hutson, Kate S., Domingos, Jose A., Chung, Catherine, Hayward, Scott, Miller, Terrance L., and Jerry, Dean R. (2017) Use of environmental DNA (eDNA) and water quality data to predict protozoan parasites outbreaks in fish farms. Aquaculture, 479. pp. 467-473.

Moorhead, Jonathan A., and Zeng, Chaoshu (2017) Weaning captive bred forktail blenny, Meiacanthus atrodorsalis, to a commercial formulated diet: optimizing timing, feeding frequency and ration. Aquaculture, 473. pp. 259-265.

Mata, Leonardo, Lawton, Rebecca J., Magnusson, Marie, Andreakis, Nikos, de Nys, Rocky, and Paul, Nicholas A. (2017) Within-species and temperature-related variation in the growth and natural products of the red alga Asparagopsis taxiformis. Journal of Applied Phycology, 29 (3). pp. 1437-1447.

Roura, Álvaro, Doyle, Stephen R., Nande, Manuel, and Strugnell, Jan M. (2017) You are what you eat: a genomic analysis of the gut microbiome of captive and wild Octopus vulgaris paralarvae and their zooplankton prey. Frontiers in Physiology, 8. 362.

Glasson, Christopher R.K., Sims, Ian M., Carnachan, Susan M., de Nys, Rocky, and Magnusson, Marie (2017) A cascading biorefinery process targeting sulfated polysaccharides (ulvan) from Ulva ohnoi. Algal Research, 27. pp. 383-391.

Cole, Andrew J., Vucko, Matthew J., and de Nys, Rocky (2017) A comparative assessment on how molasses and CO2 gas prevent carbon limitation in the large-scale culture of freshwater macroalgae. Algal Research, 27. pp. 215-222.

Jones, David B., Jerry, Dean R., Khatkar, Mehar, Raadsma, Herman W., van der Steen, Hein, Prochaska, Jeffrey, Fôret, Sylvain, and Zenger, Kyall R. (2017) A comparative integrated gene-based linkage and locus ordering by linkage disequilibrium map for the Pacific white shrimp, Litopenaeus vannamei. Scientific Reports, 7. 10360.

Vucko, Matthew J., Cole, Andrew J., Moorhead, Jonathan A., Pit, Josiah, and de Nys, Rocky (2017) The freshwater macroalga Oedogonium intermedium can meet the nutritional requirements of the herbivorous fish Ancistrus cirrhosus. Algal Research-biomass Biofuels And Bioproducts, 27. pp. 21-31.

Lawton, Rebecca J., Cole, Andrew J., Roberts, David A., Paul, Nicholas A., and de Nys, Rocky (2017) The industrial ecology of freshwater macroalgae for biomass applications. Algal Research, 24 (B). pp. 486-491.

Wu, Xugan, Liu, Meimei, Pan, Jie, Chen, Hao, Zeng, Chaoshu, and Cheng, Yongxu (2017) The ovarian development pattern of pond-reared Chinese mitten crab, Eriocheir sinensis H. Milne-Edwards, 1853. Crustaceana, 90 (4). pp. 449-470.

Smith, Gregory G., Poole, Andrew J., King, Peter C., Battaglene, Stephen, Fitzgibbon, Quinn, and de Nys, Rocky (2017) The release and uptake of metals from potential biofilm inhibition products during spiny lobster (Sagmariasus verreauxi, H. Milne Edwards 1851) culture. Aquaculture Research, 48 (2). pp. 608-617.

Nguyen Dinh Quang, Duy, Francis, David S., Pirozzi, Igor, and Southgate, Paul C. (2016) Use of micro-algae concentrates for hatchery culture of sandfish, Holothuria scabra. Aquaculture, 464. pp. 145-152.

Robson, Heather L.A., Noble, Tansyn H., Saunders, Richard J., Robson, Simon K.A., Burrows, Damien W., and Jerry, Dean R. (2016) Fine-tuning for the tropics: application of eDNA technology for invasive fish detection in tropical freshwater ecosystems. Molecular Ecology Resources, 16 (4). pp. 922-932.

Kishore, Pranesh, and Southgate, Paul C. (2016) A detailed description of pearl-sac development in the black-lip pearl oyster, Pinctada margaritifera (Linnaeus 1758). Aquaculture Research, 47 (7). pp. 2215-2226.

Magnusson, Marie, Carl, Christina, Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2016) Seaweed salt from Ulva: a novel first step in a cascading biorefinery model. Algal Research, 16. pp. 308-316.

Cole, Andrew, Dinburg, Yakov, Haynes, Brian S., He, Yaya, Herskowitz, Moti, Jazrawi, Christopher, Landau, Miron, Liang, Xiao, Magnusson, Marie, Maschmeyer, Thomas, Masters, Anthony F., Meiri, Nora, Neveux, Nicolas, de Nys, Rocky, Paul, Nicholas, Rabaev, Moshe, Vidruk-Nehemya, Roxana, and Yuen, Alexander K.L. (2016) From macroalgae to liquid fuel via waste-water remediation, hydrothermal upgrading, carbon dioxide hydrogenation and hydrotreating. Energy & Environmental Science, 9 (5). pp. 1828-1840.

von Alvensleben, Nicolas, Magnusson, Marie, and Heimann, Kirsten (2016) Salinity tolerance of four freshwater microalgal species and the effects of salinity and nutrient limitation on biochemical profiles. Journal of Applied Phycology, 28 (2). pp. 861-876.

Jones, B., Smullen, R., and Carton, A.G. (2016) Flavour enhancement of freshwater farmed barramundi (Lates calcarifer), through dietary enrichment with cultivated sea lettuce, Ulva ohnoi. Aquaculture, 454. pp. 192-198.

Karthikeyan, Obulisamy Parthiba, Chidambarampadmavathy, Karthigeyan, Nadarjan, Saravanan, and Heimann, Kirsten (2016) Influence of nutrients on oxidation of low level methane by mixed methanotrophic consortia. Environmental Science and Pollution Research, 23 (5). pp. 4346-4357.

Bylemans, Jonas, Maes, Gregory E., Diopere, Eveline, Cariani, Alessia, Senn, Helen, Taylor, Martin I., Helyar, Sarah, Bargelloni, Luca, Bonaldo, Alessio, Carvalho, Gary, Guarniero, Ilaria, Komen, Hans, Martinsohn, Jann Th., Nielsen, Einar E., Tinti, Fausto, Volckaert, Filip A.M., and Ogden, Rob (2016) Evaluating genetic traceability methods for captive‑bred marine fish and their applications in fisheries management and wildlife forensics. Aquaculture Environment Interactions , 8. pp. 131-145.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., and Zenger, Kyall R. (2016) Fishing for divergence in a sea of connectivity: the utility of ddRADseq genotyping in a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera. Marine Genomics, 25. pp. 57-68.

Mata, Leonardo, Magnusson, Marie, Paul, Nicholas A., and de Nys, Rocky (2016) The intensive land-based production of the green seaweeds Derbesia tenuissima and Ulva ohnoi: biomass and bioproducts. Journal of Applied Phycology, 28 (1). pp. 365-375.

Angell, Alex R., Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2016) The protein content of seaweeds: a universal nitrogen-to-protein conversion factor of five. Journal of Applied Phycology, 28 (1). pp. 511-524.

Kishore, Pranesh, and Southgate, Paul C. (2016) The effect of different culture methods on the quality of round pearls produced by the black-lip pearl oyster Pinctada margaritifera (Linnaeus, 1758). Aquaculture, 451. pp. 65-71.

Johansson, Charlotte L., Paul, Nicholas A., de Nys, Rocky, and Roberts, David A. (2016) Simultaneous biosorption of selenium, arsenic and molybdenum with modified algal-based biochars. Journal of Environmental Management, 165. pp. 117-123.

Cole, Andrew J., Neveux, Nicolas, Whelan, Anna, Morton, Jeff, Vis, Mark, de Nys, Rocky, and Paul, Nicholas A. (2016) Adding value to the treatment of municipal wastewater through the intensive production of freshwater macroalgae. Algal Research, 20. pp. 100-109.

Estrada, Uriel Rodriguez, Yasumaru, Fanny Ayumi, Tacon, Albert, and Lemos, Daniel (2016) Cobia (Rachycentron canadum): A selected annotated bibliography on aquaculture, general biology and fisheries 1967-2015. Reviews in Fisheries Science & Aquaculture, 24 (1). pp. 1-97.

Amoroso, G., Cobcroft, J.M., Adams, M.B., Ventura, T., and Carter, C. G. (2016) Concurrence of lower jaw skeletal anomalies in triploid Atlantic salmon (Salmo salar L.) and the effect on growth in freshwater. Journal of Fish Diseases, 39 (12). pp. 1509-1521.

Duy, Nguyen Dinh Quang, Francis, David S., and Southgate, Paul C. (2016) Development of hyaline spheres in late auriculariae of sandfish, Holothuria scabra: is it a reliable indicator of subsequent performance? Aquaculture, 465. pp. 144-151.

Ngo, Diu Thi, Wade, Nicholas, Pirozzi, Igor, and Glencross, Brett D. (2016) Effects of canola meal on growth, feed utilisation, plasma biochemistry, histology of digestive organs and hepatic gene expression of barramundi (Asian seabass; Lates calcarifer). Aquaculture, 464. pp. 95-105.

Rasdi, Nadiah W., Qin, Jian G., and Li, Yan (2016) Effects of dietary microalgae on fatty acids and digestive enzymes in copepod Cyclopina kasignete, a potential live food for fish larvae. Aquaculture Research, 47 (10). pp. 3254-3264.

Munday, Philip L., Watson, Sue-Ann, Parsons, Darren M., King, Alicia, Barr, Neill G., McLeod, Ian M., Allan, Bridie J.M., and Pether, Steve M.J. (2016) Effects of elevated CO2 on early life history development of the yellowtail kingfish, Seriola lalandi, a large pelagic fish. ICES Journal of Marine Science, 73 (3). pp. 641-649.

Loh, Jiun Yan, and Ting, Adeline Su Yien (2016) Effects of potential probiotic Lactococcus lactis subsp. lactis on digestive enzymatic activities of live feed Artemia franciscana. Aquaculture International, 24. pp. 1341-1351.

Zhu, Youjian, Piotrowska, Patrycja, van Eyk, Philip J., Bostrom, Dan, Wu, Xuehong, Boman, Christoffer, Brostrom, Markus, Zhang, Jun, Kwong, Chi Wai, Wang, Dingbiao, Cole, Andrew J., de Nys, Rocky, Gentili, Francesco G., and Ashman, Peter J. (2016) Fluidized bed co-gasification of algae and wood pellets: gas yields and bed agglomeration analysis. Energy and Fuels, 30 (3). pp. 1800-1809.

Loughnan, Shannon R., Smith-Keune, Carolyn, Jerry, Dean R., Beheregaray, Luciano B., and Robinson, Nicholas A. (2016) Genetic diversity and relatedness estimates for captive barramundi (Lates calcarifer, Bloch) broodstock informs efforts to form a base population for selective breeding. Aquaculture Research, 47 (11). pp. 3570-3584.

Costello, Christopher, Ovando, Daniel, Clavelle, Tyler, Kent Strauss, C., Hilborn, Ray, Melnychuk, Michael C., Branch, Trevor A., Gaines, Steven D., Szuwalski, Cody S., Cabral, Reniel B., Rader, Douglas N., and Leland, Amanda (2016) Global fishery prospects under contrasting management regimes. Proceedings of the National Academy of Sciences of the United States of America, 113 (18). pp. 5125-5129.

Tibbetts, Sean, Yasumaru, Fanny, and Lemos, Daniel (2016) In vitro prediction of digestible protein content of marine microalgae (Nannochloropsis granulata) meals for Pacific white shrimp (Litopenaeus vannamei) and rainbow trout (Oncorhynchus mykiss). Algal Research, 21. pp. 76-80.

Yen, Jian D.L., Cabral, Reniel B., Cantor, Mauricio, Hatton, Ian, Kortsch, Susanne, Patrício, Joana, and Yamamichi, Masato (2016) Linking structure and function in food webs: maximization of different ecological functions generates distinct food web structures. Journal of Animal Ecology, 85 (2). pp. 537-547.

Albalat, Amaya, Nadler, Lauren E., Foo, Nicholas, Dick, James R., Watts, Andrew J.R., Philp, Heather, Neil, Douglas M., and Monroig, Oscar (2016) Lipid composition of oil extracted from wasted Norway lobster (Nephrops norvegicus) heads and comparison with oil extracted from Antarctic krill (Euphasia superba). Marine Drugs, 14 (12). 219. pp. 1-13.

Amoroso, Gianluca, Ventura, Tomer, Cobcroft, Jennifer M., Adams, Mark B., Elizur, Abigail, and Carter, Chris (2016) Multigenic delineation of lower jaw deformity in triploid Atlantic salmon (Salmo salar L.). PLoS ONE, 11 (12). e0168454. pp. 1-21.

Delghandi, M., Goddard, S., Jerry, D.R., Dao, H.T., Al Hinai, M.S.N., Al-Amry, W., and Al-Marzouqi, A. (2016) Novel genomic microsatellite markers for genetic population and diversity studies of tropical scalloped spiny lobster (Panulirus homarus) and their potential application in related Panulirus species. Genetics and Molecular Research, 15 (2). pp. 1-5.

Li, Yan, Mangott, Arnold, Kent, Megan, and Pirozzi, Igor (2016) Nutrient efficacy of microalgae as aquafeed additives for the adult black tiger prawn, Penaeus monodon. Aquaculture Research, 47 (11). pp. 3625-3635.

Collins, Geoffrey Mark, Clark, Timothy Darren, and Carton, Alexander Guy (2016) Physiological plasticity v. inter-population variability: understanding drivers of hypoxia tolerance in a tropical estuarine fish. Marine and Freshwater Research, 67 (10). pp. 1575-1582.

Ram, Ravinesh, Chand, Roveena Vandana, Zeng, Chaoshu, and Southgate, Paul C. (2016) Recovery rates for eight commercial sea cucumber species from the Fiji Islands. Regional Studies in Marine Science, 8. pp. 59-64.

Carl, Christina, Lawton, Rebecca J., Paul, Nicholas A., and de Nys, Rocky (2016) Reproductive output and productivity of filamentous tropical Ulva over time. Journal of Applied Phycology, 28 (1). pp. 429-438.

Thépot, Valentin, Mangott, Arnold, and Pirozzi, Igor (2016) Rotifers enriched with a mixed algal diet promote survival, growth and development of barramundi larvae, Lates calcarifer (Bloch). Aquaculture Reports, 3. pp. 147-158.

Angell, Alex R., Angell, Simon F., de Nys, Rocky, and Paul, Nicholas A. (2016) Seaweed as a protein source for mono-gastric livestock. Trends in Food Science and Technology, 54. pp. 74-84.

Cole, Andrew J., Roberts, David A., Garside, Alan L., de Nys, Rocky, and Paul, Nicholas A. (2016) Seaweed compost for agricultural crop production. Journal of Applied Phycology, 28 (1). pp. 629-642.

Cabral, Reniel B., Gaines, Steven D., Lim, May T., Atrigenio, Michael P., Mamauag, Samuel S., Pedemonte, Gerold C., and Aliño, Porfirio M. (2016) Siting marine protected areas based on habitat quality and extent provides the greatest benefit to spatially structured metapopulations. Ecosphere, 7 (11). e01533.

Herrera, Marcela, Clarke, Tayler M., Naranjo-Elizondo, Beatriz, Espinoza, Mario, and Wehrtmann, Ingo S. (2016) Size at maturity of the Pacific bearded brotula (Ophidiidae: Brotula clarkae): a commercially exploited species in the Pacific of Costa Rica. Latin American Journal Of Aquatic Research, 44 (3). pp. 657-661.

Amoroso, G., Adams, M.B., Ventura, T., Carter, C.G., and Cobcroft, J.M. (2016) Skeletal anomaly assessment in diploid and triploid juvenile Atlantic salmon (Salmo salar L.) and the effect of temperature in freshwater. Journal of Fish Diseases, 39 (4). pp. 449-466.

Malerba, Martino E., Connolly, Sean R., and Heimann, Kirsten (2016) Standard flow cytometry as a rapid and non-destructive proxy for cell nitrogen quota. Journal of Applied Phycology, 28 (2). pp. 1085-1095.

Nayfa, Maria G., and Zenger, Kyall R. (2016) Unravelling the effects of gene flow and selection in highly connected populations of the silver-lip pearl oyster (Pinctada maxima). Marine Genomics, 28. pp. 99-106.

Joyce, Melissa K., and Pirozzi, Igor (2016) Using stable isotope analysis to determine the contribution of naturally occurring pond biota and supplementary feed to the diet of farmed Australian freshwater crayfish, redclaw (Cherax quadricarinatus). International Aquatic Research , 8 (3). pp. 1-13.

Bolton, John J., Cyrus, Mark, Brand, Morgan J., Joubert, Michael, and Macey, Brett M. (2016) Why grow Ulva? Its potential role in the future of aquaculture. Perspectives in Phycology, 3 (3). pp. 113-120.

Malta, Eric-jan, and de Nys, Rocky (2016) The effect of short-term preharvest strategies on the carbon constituents of Ulva ohnoi M. Hiraoka et S. Shimada. Journal of Applied Phycology, 28 (1). pp. 555-565.

Roberts, David A., and de Nys, Rocky (2016) The effects of feedstock pre-treatment and pyrolysis temperature on the production of biochar from the green seaweed Ulva. Journal of Environmental Management, 169. pp. 253-260.

Wassnig, Matthew, and Southgate, Paul C. (2016) The effects of stocking density and ration on survival and growth of winged pearl oyster (Pteria penguin) larvae fed commercially available micro-algae concentrates. Aquaculture Reports, 4. pp. 17-21.

Ram, Ravinesh, Chand, Roveena Vandana, and Southgate, Paul Colin (2016) An overview of sea cucumber fishery management in the Fiji Islands. Journal of Fisheries and Aquatic Science, 11 (3). pp. 191-205.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., Bosserelle, Cyprien, and Zenger, Kyall R. (2016) A parallel population genomic and hydrodynamic approach to fishery management of highly-dispersive marine invertebrates: the case of the Fijian Black-Lip Pearl Oyster Pinctada margaritifera. PLoS One, 11 (8). e0161390. pp. 1-26.

Gong, Jie, Huang, Chencui, Shu, Ling, Bao, Chenchang, Huang, Huiyang, Ye, Haihui, Zeng, Chaoshu, and Li, Shaojing (2016) The retinoid X receptor from mud crab: new insights into its roles in ovarian development and related signaling pathway. Scientific Reports, 6. 23654. pp. 1-13.

Carl, Christina, Magnusson, Marie, Paul, Nicholas A., and de Nys, Rocky (2016) The yield and quality of multiple harvests of filamentous Ulva tepida. Journal of Applied Phycology, 28 (5). pp. 2865-2873.

Loh, Jiun-Yan, and Ting, Adeline Su-Yien (2015) Bioencapsulation of probiotic Lactococcus lactis subsp. lactis on Artemia franciscana nauplii: Effects of encapsulation media on Nauplii survival and probiotic recovery. Malaysian Journal of Microbiology, 11 (2). pp. 121-127.

Cyrus, Mark, Bolton, John J., and Macey, Brett M. (2015) The role of the green seaweed Ulva as a dietary supplement for full life-cycle grow-out of Tripneustes gratilla. Aquaculture, 446. pp. 187-197.

Loh, Jiun Yan, Lim, Yau Yan, Harmin, Sharr Azni, and Ting, Adeline Su Yien (2014) In vitro assessment on intestinal microflora from commonly farmed fishes for control of the fish pathogen Edwardsiella tarda. Turkish Journal of Veterinary & Animal Sciences, 38 (3). pp. 257-263.

Yasumaru, F., and Lemos, D. (2014) Species specific in vitro protein digestion (pH-stat) for fish: method development and application for juvenile rainbow trout (Oncorhynchus mykiss), cobia (Rachycentron canadum), and Nile tilapia (Oreochromis niloticus). Aquaculture, 426-427. pp. 74-84.

Cyrus, M.D., Bolton, J.J., Scholtz, R., and Macey, B. (2014) The advantages of Ulva (Chlorophyta) as an additive in sea urchin formulated feeds: effects on palatability, consumption and digestibility. Aquaculture Nutrition, 21 (5). pp. 578-591.

Loh, Jiun-Yan, Ong, Han Kiat Alan, Hii, Yii Siang, Smith, Thomas J., Lock, Malcolm M., and Khoo, Gideon (2013) Impact of Potential Food Sources on the Life Table of the Cladoceran, Moina macrocopa. The Israeli Journal of Aquaculture - Bamidgeh, 65. 820.

Cyrus, Mark D., Bolton, John J., De Wet, Lourens, and Macey, Brett M. (2013) The development of a formulated feed containing Ulva (Chlorophyta) to promote rapid growth and enhanced production of high quality roe in the sea urchin Tripneustes gratilla (Linnaeus). Aquaculture Research, 45 (1). pp. 159-176.

Loh, Jiun Yan, Ong, Han Kiat Alan, Hii, Yii Siang, Smith, Thomas J., Lock, Malcolm M., and Khoo, Gideon (2012) Highly Unsaturated Fatty Acid (HUFA) Retention in the Freshwater Cladoceran, Moina macrocopa, Enriched With Lipid Emulsions. Israeli Journal of Aquaculture - Bamidgeh, 64.

Costa, Rafael, Yasumaru, Fanny, and Lemos, Daniel (2010) Nursery performance of the pink shrimp Farfantepenaeus paulensis (Crustacea: Decapoda: Penaeidae) postlarvae in different salinities. Zoologia, 27 (3). pp. 317-323.

Nunes, Moira, Pereira, Adriana, Ferreira, Jaime, and Yasumaru, Fanny (2009) Evaluation of the Microalgae Paste Viability Produced in a Mollusk Hatchery in Southern Brazil. Journal of the World Aquaculture Society, 40 (1). pp. 87-94.

Book Chapter

Gleadall, Ian G., Che, Leo J., and Hutchinson, Neil (2024) ‘Octopus’ parvus, bean octopus. In: Rosa, Rui, Gleadall, Ian, Pierce, Graham, and Villanueva, Roger, (eds.) Octopus Biology and Ecology. Academic Press, London, United Kingdom, pp. 281-310.

Donelson, Jennifer M., Romans, Pascal, Yamanaka, Sakuto, Kinoshita, Masato, and Roux, Natasha (2023) Anemonefish Husbandry. In: Laudet, Vincent, and Ravasi, Timothy, (eds.) Evolution, Development and Ecology of Anemonefishes: Model Organisms for Marine Science. CRC Press, Boca Raton, Florida, USA, pp. 237-251.

Chong, Chou-Min, Shakir, Mohamed Zahuwaan, Lai, Kok-Song, Liew, Hon Jung, and Loh, Jiun-Yan (2023) Microbes and fish diseases. In: Jyothis, Mathew, Radhakrishnan, E.K., Midhun, Sebastian Jose, and Ajay, Kumar, (eds.) Recent Advances in Aquaculture Microbial Technology. Academic Press, London, United Kingdom, pp. 65-102.

Sharven, R.M., and Loh, Jiun-Yan (2022) Insect-based aquafeeds: A sustainable solution for fish nutrition. In: Loh, Jiun-Yan, Soo, Michelle Oi-Yoon, Gunasekaran, Baskaran, and Andin, Victor Charlie, (eds.) Advances in Aquaculture. UCSI Press, Kuala Lumpur, Malaysia, pp. 86-94.

Jones, Clive, Anh, Tuan Le, and Priyambodo, Bayu (2019) Lobster aquaculture development in Vietnam and Indonesia. In: Radhakrishnan, E. V., Phillips, Bruce F., and Achamveetil, Gopalakrishnan, (eds.) Lobsters: Biology, Fisheries and Aquaculture. Springer, Singapore, pp. 541-570.

Neveux, Nicolas, Bolton, John J., Bruhn, Annette, Roberts, David A., and Ras, Monique (2018) The bioremediation potential of seaweeds: recycling nitrogen, phosphorus, and other waste products. In: La Barre, Stéphane, and Bates, Stephen S., (eds.) Blue Biotechnology: production and use of marine molecules. Wiley-VCH, Weinheim, Germany, pp. 217-239.

Loh, Jiun Yan, and Ting, Adeline Su Yien (2017) Bioprospecting Gastrointestinal Microflora of Common Fishes for Disease Control in Aquaculture. In: Kalia, Vipin Chandra, Shouche, Yogesh, Purohit, Hemant J., and Rahi, Praveen, (eds.) Mining of Microbial Wealth and MetaGenomics. Springer, Singapore, Singapore, pp. 161-182.

Report

Nankervis, L., Barbero, G., Irving, A., Joyce, M., Pizzutto, M., Diedrich, A., and Condon, K. (2022) Future-proofing the NA aquaculture industry need for skilled staff to 2050. Report. CRC for Developing Northern Australia, Townsville.

Cobcroft, Jennifer, Bell, Rob, Fitzgerald, Jessica, and Jerry, Dean (2020) Northern Australia aquaculture situational analysis. Report. CRCNA, Townsville, QLD, Australia.

Jones, Clive (2020) Research for development of lobster growout technology in Indonesia [Final report on ACIAR project FIS/2014/059]. Report. Australian Centre for International Agricultural Research, Canberra, ACT, Australia.

Bansemer, M.S., Stone, D.A.J., Skordas, P, Currie, K., Crowe, B., Nankervis, L., Salini, M., and UNSPECIFIED (2019) 3.1.3.1. Manuscript - Reducing dietary wild derived fish meal inclusion levels in production diets for large Yellowtail Kingfish (Seriola lalandi) (N5/N2; Output 2a) [In: Stone, D.A.J., Booth, M.A. and Clarke, S.M. (eds).Growing a Profitable, Innovative and Collaborative Australian Yellowtail Kingfish Aquaculture Industry: Bringing ‘White’ Fish to the Market (DAWR Grant Agreement RnD4Profit-14-01-027)]. Report Section. South Australian Research and Development Institute (SARDI), Adelaide, SA, Australia.

Conference Item

Sahidhir, Ibnu, Syahrul, Syafrizal, Dewiyanti, Irma, Jones, Clive M., and Rimmer, Michael A. (2023) Feeding management and appraisal of recirculating aquaculture system for spiny lobster Panulirus spp. weaning. In: E3S Web of Conferences (442) 02020. From: ISFFS 2023: 2nd International Seminar on Fish and Fisheries Sciences, 6-7 June 2023, Denpasar-Bali, Indonesia.

Shiel, Brett P., Cooke, Ira R., Hall, Nathan E., Robinson, Nicholas A., and Strugnell, Jan M. (2018) Summer mortality in molluscs: the genetic basis for resilience and susceptibility. In: Breeding Focus 2018. pp. 59-79. From: Breeding Focus 2018: reducing heat stress, 19-20 September 2018, Armidale, NSW, Australia.

Khatkar, M.S., Zenger, K.R., Jones, D.B., Prochaska, Jeff, van der Steen, H.A.M., Jerry, D.R., and Raadsma, H.W. (2017) Quantitative genomic analyses in the pacific whiteleg shrimp litopenaeus vannamei. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics (22) pp. 121-124. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Khatkar, M.S., Jones, D.B., Toole, P.B., Raadsma, H.W., Jerry, D.R., and Zenger, K.R. (2017) Reconstruction of unknown donor genome from chimeric pearl sac tissue and host genotypes in pinctada maxima. In: Proceedings of the Association for the Advancement of Animal Breeding and Genetics. pp. 445-448. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Zenger, K.R., Khatkar, M.S., Jerry, D.R., and Raadsma, H.W. (2017) The next wave in selective breeding: implementing genomic selection in aquaculture. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. pp. 105-112. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Jones, D.B., Toole, P.B., Khatkar, M.S., Raadsma, H.W., Jerry, D.R., and Zenger, K.R. (2017) Developing a genomic selection breeding program for complex pearl colour traits within the silver-lipped pearl oyster. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. pp. 537-540. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Jones, D.B., Zenger, K.R., Khatkar, M.S., Raadsma, H.W., van der Steen, H.A.M., Prochaska, J., Fôret, S., and Jerry, D.R. (2017) Development of a low density commercial genotyping array for the white legged shrimp, Litopenaeus vannamei. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. pp. 117-120. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Book

Loh, Jiun-Yan, Soo, Michelle Oi-Yoon, Gunasekaran, Baskaran, and Andin, Victor Charlie (2022) Advances in Aquaculture. UCSI Press, Kuala Lumpur, Malaysia.

Thesis

Aquino, Jon Irish Legaspi (2023) Sperm quality of male redclaw crayfish (Cherax quadricarinatus): Insights from conventional and advanced sperm diagnostic tools, methods of spermatophore collection, and broodstock nutrition. PhD thesis, James Cook University.

Chen, Jun Yu (2021) Captive breeding of orchid dottyback Pseudochromis fridmani: reproduction, ontogeny and larval feeding regime. PhD thesis, James Cook University.

Marc, Adrien François (2021) Development of advanced reproductive techniques to characterize fertility and accelerate selective breeding in barramundi (Lates calcarifer). PhD thesis, James Cook University.

Xu, Tian (2021) Development of captive rearing techniques for decorator crab, Camposcia retusa, for marine aquarium trade. PhD thesis, James Cook University.

Rigg, Damian Peter (2021) Identify factors influencing the variability of survivorship of juvenile redclaw crayfish Cherax quadricarinatus (von Martens, 1898) in aquaculture. PhD thesis, James Cook University.

Candebat, Caroline Lourdes (2021) Optimizing dietary specifications for yellowtail kingfish, Seriola lalandi: requirements and interactions of sulfur amino acids and taurine. PhD thesis, James Cook University.

Thi Thanh Vu, Nga (2021) Population genomics of the giant black tiger shrimp Penaeus monodon to understand wild fishery and aquaculture production. PhD thesis, James Cook University.

Syahidah, Dewi (2020) Assessment of cell cultures to propagate crustacean viruses. PhD thesis, James Cook University.

Saleh, Alzayat (2020) Developing deep learning methods for aquaculture applications. Masters (Research) thesis, James Cook University.

Nayfa, Maria George (2020) Domestication in aquaculture fishes - elucidating the genetic consequences in Nile Tilapia (Oreochromis niloticus). PhD thesis, James Cook University.

Barton, Jonathan (2020) Mitigating the impact of the Acropora-eating flatworm, Prosthiostomum acroporae on captive Acropora coral colonies. PhD thesis, James Cook University.

Joyce, Melissa (2020) Understanding the nutritional requirements of redclaw (Cherax quadricarinatus): determining the apparent digestibility of raw materials and quantifying dietary lysine requirement. Masters (Research) thesis, James Cook University.

Harohau, Daykin Otowauri (2020) Understanding the social dimensions of small-scale tilapia aquaculture in rural Solomon Islands. PhD thesis, James Cook University.