A

Arbon, P.M., Andrade Martinez, Maria, Garrett, M. Andrade, Jerry, D.R., and Condon, K. (2024) Determining patterns of tissue tropism for IHHNV, GAV and YHV-7 infection in giant black tiger shrimp (Penaeus monodon) using real-time RT-qPCR. Aquaculture, 584. 740680.

Arbon, P.M., Andrade Martinez, M., Jerry, D.R., and Condon, K. (2024) Towards a 'systems' approach for viral challenge experiments in shrimp: Reporting guidelines for publication. Reviews in Aquaculture, 16 (2). pp. 923-941.

Aquino, Jon Irish Legaspi (2023) Sperm quality of male redclaw crayfish (Cherax quadricarinatus): Insights from conventional and advanced sperm diagnostic tools, methods of spermatophore collection, and broodstock nutrition. PhD thesis, James Cook University.

Arbon, P.M., Andrade Martinez, M. Andrade, Jerry, D.R., and Condon, K. (2023) Towards a ‘systems’ approach for viral challenge experiments in shrimp: Reporting guidelines for publication. Reviews in Aquaculture, 16 (2). pp. 923-941.

Arbon, P.M., Condon, K., Andrade Martinez, M., and Jerry, D.R. (2022) Molecular detection of six viral pathogens from Australian wild sourced giant black tiger shrimp (Penaeus monodon) broodstock. Aquaculture, 548. 737651.

Aquino, Jon Irish, Elliott, Lisa, Zeng, Chaoshu, and Paris, Damien B.B.P. (2022) Recent developments in male fertility evaluation, sperm cryopreservation and artificial fertilisation, and their potential application to decapod crustacean aquaculture. Reviews in Aquaculture, 14 (2). pp. 848-889.

Amira, Kafia Islam, Rahman, Mohammad Redwanur, Sikder, Suchandan, Khatoon, Helen, Afruj, Jinat, Haque, Mohammad Ekramul, and Minhaz, Tashrif Mahmud (2021) Data on Growth, survivability, water quality and hemato-biochemical indices of Nile Tilapia (Oreochromis niloticus) fry fed with selected marine microalgae. Data in Brief, 38. 107422.

Arbon, Phoebe M., Silva, Catarina N.S., Jones, David B., Jaccoud, Damian, Gervis, Mark, Jerry, Dean R., and Strugnell, Jan M. (2021) Development and validation of a SNP-based genotyping tool for pedigree establishment in Australian greenlip abalone Haliotis laevigata Donovan, 1808. Aquaculture Reports, 20. 100746.

Abualreesh, Muyassar, Myers, Jaelen, Gurbatow, Jeremy, Johnson, Andrew, Xing, De, Wang, Jinhai, Li, Shangjia, Coogan, Michael, Vo, Khoi, El Husseini, Nour, Creamer, David, Dunham, Rex A., and Butts, Ian A.E. (2021) Development of an effective cryopreservation protocol for Blue Catfish oogonia. North American Journal of Aquaculture, 83 (4). pp. 336-345.

Amira, Kafia Islam, Rahman, Mohammad Redwanur, Khatoon, Helena, Sikder, Suchandan, Islam, Skm Azizul, Afruj, Jinat, Jamal, Foujia, and Haque, Mohammad Ekramul (2021) Effects of microalgae inoculated diet on growth performance and blood parameters of Nile tilapia (Oreochromis niloticus). Bangladesh Journal of Fisheries, 33 (2). pp. 243-254.

Angell, Alex, de Nys, Rocky, Mangott, Arnold, and Vucko, Matthew J. (2018) The effects of concentration and supplementation time of natural and synthetic sources of astaxanthin on the colouration of the prawn Penaeus monodon. Algal Research, 35. pp. 577-585.

Angell, Alex R., Paul, Nicholas A., and de Nys, Rocky (2017) A comparison of protocols for isolating and concentrating protein from the green seaweed Ulva ohnoi. Journal of Applied Phycology, 29 (2). pp. 1011-1026.

Angell, Alex R., Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2016) The protein content of seaweeds: a universal nitrogen-to-protein conversion factor of five. Journal of Applied Phycology, 28 (1). pp. 511-524.

Amoroso, G., Cobcroft, J.M., Adams, M.B., Ventura, T., and Carter, C. G. (2016) Concurrence of lower jaw skeletal anomalies in triploid Atlantic salmon (Salmo salar L.) and the effect on growth in freshwater. Journal of Fish Diseases, 39 (12). pp. 1509-1521.

Albalat, Amaya, Nadler, Lauren E., Foo, Nicholas, Dick, James R., Watts, Andrew J.R., Philp, Heather, Neil, Douglas M., and Monroig, Oscar (2016) Lipid composition of oil extracted from wasted Norway lobster (Nephrops norvegicus) heads and comparison with oil extracted from Antarctic krill (Euphasia superba). Marine Drugs, 14 (12). 219. pp. 1-13.

Amoroso, Gianluca, Ventura, Tomer, Cobcroft, Jennifer M., Adams, Mark B., Elizur, Abigail, and Carter, Chris (2016) Multigenic delineation of lower jaw deformity in triploid Atlantic salmon (Salmo salar L.). PLoS ONE, 11 (12). e0168454. pp. 1-21.

Angell, Alex R., Angell, Simon F., de Nys, Rocky, and Paul, Nicholas A. (2016) Seaweed as a protein source for mono-gastric livestock. Trends in Food Science and Technology, 54. pp. 74-84.

Amoroso, G., Adams, M.B., Ventura, T., Carter, C.G., and Cobcroft, J.M. (2016) Skeletal anomaly assessment in diploid and triploid juvenile Atlantic salmon (Salmo salar L.) and the effect of temperature in freshwater. Journal of Fish Diseases, 39 (4). pp. 449-466.

B

Bansemer, Matthew S., Salini, Michael J., Nankervis, Leo, and Stone, David A.J. (2023) Reducing dietary wild derived fishmeal inclusion levels in production diets for large yellowtail kingfish (Seriola lalandi). Aquaculture, 572. 739487.

Budd, Alyssa M., Guppy, Jarrod L., Thepot, Valentin, Domingos, Jose A., and Jerry, Dean R. (2022) Delayed effect of low rearing temperature on gonadal DNA methylation in juvenile barramundi (Lates calcarifer). Aquaculture, 560. 738541.

Brink-Hull, M., Cyrus, M.D., Macey, B.M., Rhode, C., Hull, K.L., and Roodt-Wilding, R. (2022) Dietary effects on the reproductive performance of the sea urchin Tripneustes gratilla l: Implications for broodstock conditioning. Aquaculture, 552. 738035.

Brink-Hull, M., Cyrus, M.D., Macey, B.M., Rhode, C., Hull, K.L., and Roodt-Wilding, R. (2022) Dietary effects on the reproductive performance of the sea urchin Tripneustes gratilla ll: Implications for offspring performance. Aquaculture, 553. 738034.

Borkens, Yannick, and Koppe, Paul (2022) Mytilicola orientalis. Aquaculture International, 30. pp. 2741-2749.

Booth, Mark A., and Pirozzi, Igor (2022) The digestible histidine requirement of juvenile yellowtail kingfish Seriola lalandi. Aquaculture, 548 (Part 1). 737543.

Banh, Quyen Q.T., Domingos, Jose A., Pinto, Ricardo C.C., Nguyen, Kien T., and Jerry, Dean R. (2021) Dietary 17 β-oestradiol and 17 α-ethinyloestradiol alter gonadal morphology and gene expression of the two sex-related genes, dmrt1 and cyp19a1a, in juvenile barramundi (Lates calcarifer Bloch). Aquaculture Research, 52 (4). pp. 1414-1430.

Banh, Quyen Q. T., Guppy, Jarrod L., Domingos, Jose A., Budd, Alyssa M., Pinto, Ricardo C. C., Marc, Adrien F., and Jerry, Dean R. (2021) Induction of precocious females in the protandrous barramundi (Lates calcarifer) through implants containing 17β-estradiol - effects on gonadal morphology, gene expression and DNA methylation of key sex genes. Aquaculture, 539. 736601.

Barton, Jonathan (2020) Mitigating the impact of the Acropora-eating flatworm, Prosthiostomum acroporae on captive Acropora coral colonies. PhD thesis, James Cook University.

Bansemer, M.S., Stone, D.A.J., Skordas, P, Currie, K., Crowe, B., Nankervis, L., Salini, M., and UNSPECIFIED (2019) 3.1.3.1. Manuscript - Reducing dietary wild derived fish meal inclusion levels in production diets for large Yellowtail Kingfish (Seriola lalandi) (N5/N2; Output 2a) [In: Stone, D.A.J., Booth, M.A. and Clarke, S.M. (eds).Growing a Profitable, Innovative and Collaborative Australian Yellowtail Kingfish Aquaculture Industry: Bringing ‘White’ Fish to the Market (DAWR Grant Agreement RnD4Profit-14-01-027)]. Report Section. South Australian Research and Development Institute (SARDI), Adelaide, SA, Australia.

Berry, Sarah E., Wade, Nicholas, Cedric, Simon, Foote, Andrew, Jerry, Dean R., and Wade, Nicholas M. (2019) Evaluation of baseline haemolymph biochemistry, volume and total body energetics to determine an accurate condition index in the black tiger shrimp, Penaeus monodon. Comparative Biochemistry and Physiology-Part B: biochemistry & molecular biology, 228. pp. 1-9.

Barton, Jonathan A., Hutson, Kate S., Bourne, David G., Humphrey, Craig, Dybala, Cat, and Rawlinson, Kate A. (2019) The life cycle of the Acropora coral-eating flatworm (AEFW), Prosthiostomum acroporae; the influence of temperature and management guidelines. Frontiers in Marine Science, 6. 524.

Brazenor, Alexander K.,, Bertozzi, Terry, Miller, Terrence L., Whittington, Ian D., and Hutson, Kate S. (2018) DNA profiling reveals Neobenedenia girellae as the primary culprit in global fisheries and aquaculture. Molecular Phylogenetics and Evolution, 129. pp. 130-137.

Bao, Chenchang, Yang, Yanan, Zeng, Chaoshu, Huang, Huiyang, and Ye, Haihui (2018) Identifying neuropeptide GPCRs in the mud crab, Scylla paramamosain, by combinatorial bioinformatics analysis. General and Comparative Endocrinology, 269. pp. 122-130.

Bastos Gomes, G., Jerry, D.R., Miller, T.L., and Hutson, K.S. (2017) Current status of parasitic ciliates Chilodonella spp. (Phyllopharyngea: Chilodonellidae) in freshwater fish aquaculture. Journal of Fish Diseases, 40 (5). pp. 703-715.

Bastos Gomes, Giana, Miller, Terrence L., Vaughan, David B., Jerry, Dean R., McCowan, Christina, Bradley, Tracey L., and Hutson, Kate S. (2017) Evidence of multiple species of Chilodonella (Protozoa, Ciliophora) infecting Australian farmed freshwater fishes. Veterinary Parasitology, 237. pp. 8-16.

Barton, Jonathan A., Willis, Bette L., and Hutson, Kate S. (2017) Coral propagation: a review of techniques for ornamental trade and reef restoration. Reviews in Aquaculture, 9 (3). pp. 238-256.

Banh, Quyen Q., Domingos, Jose A., Zenger, Kyall R., and Jerry, Dean R. (2017) Morphological changes and regulation of the genes dmrt1 and cyp11b during the sex differentiation of barramundi (Lates calcarifer Bloch). Aquaculture, 479. pp. 75-84.

Budd, Alyssa M., Hinton, Tracey M., Tonks, Mark, Cheers, Sue, and Wade, Nicholas M. (2017) Rapid expansion of pigmentation genes in penaeid shrimp with absolute preservation of function. The Journal of Experimental Biology, 220. pp. 4109-4118.

Bastos Gomes, Giana, Hutson, Kate S., Domingos, Jose A., Chung, Catherine, Hayward, Scott, Miller, Terrance L., and Jerry, Dean R. (2017) Use of environmental DNA (eDNA) and water quality data to predict protozoan parasites outbreaks in fish farms. Aquaculture, 479. pp. 467-473.

Bylemans, Jonas, Maes, Gregory E., Diopere, Eveline, Cariani, Alessia, Senn, Helen, Taylor, Martin I., Helyar, Sarah, Bargelloni, Luca, Bonaldo, Alessio, Carvalho, Gary, Guarniero, Ilaria, Komen, Hans, Martinsohn, Jann Th., Nielsen, Einar E., Tinti, Fausto, Volckaert, Filip A.M., and Ogden, Rob (2016) Evaluating genetic traceability methods for captive‑bred marine fish and their applications in fisheries management and wildlife forensics. Aquaculture Environment Interactions , 8. pp. 131-145.

Bolton, John J., Cyrus, Mark, Brand, Morgan J., Joubert, Michael, and Macey, Brett M. (2016) Why grow Ulva? Its potential role in the future of aquaculture. Perspectives in Phycology, 3 (3). pp. 113-120.

C

Chew, Xian Zhe, Gibson-Kueh, Susan, Jerry, Dean R., and Shen, Xueyan (2023) Comparison of intestinal bacterial communities in asymptomatic and diseased Asian seabass (Lates calcarifer) with chronic enteritis and mixed bacterial infections. Aquaculture, 572. 739516.

Candebat, Caroline Lordes, Eddie, Thibault, Marc, Adrien Francois, Fernando, Fernando, and Nankervis, Leo (2023) Exploring the physiological plasticity of giant grouper (Epinephelus lanceolatus) to dietary sulfur amino acids and taurine to measure dietary requirements and essentiality. Fish Physiology and Biochemistry, 49. pp. 829-851.

Chong, Chou-Min, Shakir, Mohamed Zahuwaan, Lai, Kok-Song, Liew, Hon Jung, and Loh, Jiun-Yan (2023) Microbes and fish diseases. In: Jyothis, Mathew, Radhakrishnan, E.K., Midhun, Sebastian Jose, and Ajay, Kumar, (eds.) Recent Advances in Aquaculture Microbial Technology. Academic Press, London, United Kingdom, pp. 65-102.

Chen, Jun Yu, Zeng, Chaoshu, and Cobcroft, Jennifer M. (2023) Year-Round Spawning, Filial Cannibalism, and Embryonic and Larval Development of the Coral Reef Fish Orchid Dottyback, Pseudochromis fridmani. Fishes, 8 (9). 451.

Chew, Xian Zhe, and Gibson-Kueh, Susan (2023) The haematology of clinically healthy, farmed juvenile Asian seabass (Lates calcarifer Bloch)-reference intervals, and indicators of subclinical disease. Journal of Fish Diseases, 46 (10). pp. 1109-1124.

Candebat, Caroline Lourdes, Stephens, Frances, Booth, Mark A., Fernando, Fernando, Lopata, Andreas, and Pirozzi, Igor (2022) Adequate levels of dietary sulphur amino acids impart improved liver and gut health in juvenile yellowtail kingfish (Seriola lalandi). British Journal of Nutrition, 129. pp. 1289-1312.

Chen, Jun Yu, Zeng, Chaoshu, and Cobcroft, Jennifer M. (2022) Digestive system ontogeny and the effects of weaning time on larval survival, growth and pigmentation development of orchid dottyback Pseudochromis fridmani. Aquaculture, 549. 737737.

Chaturvedi, Iti, Cambria, Erik, Chen, Qian, and McConnell, Desmond (2022) Landmark calibration for facial expressions and fish classification. Signal, Image and Video Processing, 16 (2). pp. 377-384.

Chen, Jun Yu (2021) Captive breeding of orchid dottyback Pseudochromis fridmani: reproduction, ontogeny and larval feeding regime. PhD thesis, James Cook University.

Camus, Thomas, Rolla, Lucrezia, Jiang, Jufeng, and Zeng, Chaoshu (2021) Effects of microalgal food quantity on several productivity-related parameters of the calanoid copepod Bestiolina similis (Calanoida: Paracalanidae). Frontiers in Marine Science, 8. 812240.

Candebat, Caroline Lourdes (2021) Optimizing dietary specifications for yellowtail kingfish, Seriola lalandi: requirements and interactions of sulfur amino acids and taurine. PhD thesis, James Cook University.

Cabral, Reniel B., Bradley, Darcy, Mayorga, Juan, Goodell, Whitney, Friedlander, Alan M., Sala, Enric, Costello, Christopher, and Gaines, Steven D. (2021) Reply to Hilborn: We agree that MPAs can improve fish catch in the South and Southeast Asia. Proceedings of the National Academy of Sciences of the United States of America, 118 (17). e2100660118.

Cabral, Reniel B., Bradley, Darcy, Mayorga, Juan, Goodell, Whitney, Friedlander, Alan M., Sala, Enric, Costello, Christopher, and Gaines, Steven D. (2021) Reply to Ovando et al.: How connected are global fisheries? Proceedings of the National Academy of Sciences of the United States of America, 118 (23). e2100364118.

Chen, Jun Yu, and Zeng, Chaoshu (2021) Transition to Artemia feeding phase for orchid dottyback Pseudochromis fridmani larvae: establishing suitable prey shift time and strategy. Aquaculture, 545. 737180.

Chen, Jun Yu, and Zeng, Chaoshu (2021) The effects of live prey and greenwater on the early larval rearing of orchid dottyback Pseudochromis fridmani. Aquaculture, 543. 737008.

Candebat, Caroline L., Booth, Mark A., and Pirozzi, Igor (2021) The sulfur amino acid requirements of juvenile Yellowtail Kingfish (Seriola lalandi). Aquaculture, 534. 736234.

Candebat, Caroline Lourdes, Booth, Mark, Codabaccus, Mohamed Basseer, and Pirozzi, Igor (2020) Dietary methionine spares the requirement for taurine in juvenile Yellowtail Kingfish (Seriola lalandi). Aquaculture, 522. 735090.

Cobcroft, Jennifer, Bell, Rob, Fitzgerald, Jessica, and Jerry, Dean (2020) Northern Australia aquaculture situational analysis. Report. CRCNA, Townsville, QLD, Australia.

Chen, Jun Yu, Zeng, Chaoshu, Jerry, Dean R., and Cobcroft, Jennifer M. (2020) Recent advances of marine ornamental fish larviculture: broodstock reproduction, live prey and feeding regimes, and comparison between demersal and pelagic spawners. Reviews in Aquaculture, 12 (3). pp. 1518-1541.

Chong, Wai-Wei, Lim, Crystale Siew-Ying, Lai, Kok-Song, and Loh, Jiun-Yan (2019) In vitro antimicrobial assessment on lactic acid bacteria isolated from common freshwater fishes. Asia Pacific Journal of Molecular Biology and Biotechnology, 27 (2). pp. 18-25.

Chen, Daming, Liu, Fang, Zhu, Zhihuang, Lin, Qi, Zeng, Chaoshu, and Ye, Haihui (2019) Ontogenetic development of gonads and external sexual characters of the protandric simultaneous hermaphrodite peppermint shrimp, Lysmata vittata (Caridea: Hippolytidae). PLoS ONE, 14 (4). e0215406.

Cyrus, Mark D., Bolton, John J., and Macey, Brett M. (2019) The use of stable isotope ratios δ 13 C and δ 15 N to track the incorporation of Ulva and other important dietary ingredients into the gonads of the sea urchin Tripneustes gratilla. Aquaculture Nutrition, 26 (1). pp. 174-185.

Chen, Zhigang, Wang, Guizhong, Zeng, Chaoshu, and Wu, Lisheng (2018) Comparative study on the effects of two diatoms as diets on planktonic calanoid and benthic harpacticoid copepods. Journal of Experimental Zoology, Part A, 329 (3). pp. 140-148.

Cole, Andrew, Praeger, Christina, Mannering, Thomas, de Nys, Rocky, and Magnusson, Marie (2018) Hot and bright: thermal and light environments for the culture of Oedogonium intermedium and the geographical limits for large-scale cultivation in Australia. Algal Research, 34 (2018). pp. 209-216.

Cabral, Reniel B., and Geronimo, Rollan C. (2018) How important are coral reefs to food security in the Philippines? Diving deeper than national aggregates and averages. Marine Policy, 91. pp. 136-141.

Castanho, S., Califano, G., Soares, F., Costa, R., Mata, L., Pousão-Ferreira, P., and Ribeiro, L. (2017) The effect of live feeds bathed with the red seaweed Asparagopsis armata on the survival, growth and physiology status of Sparus aurata larvae. Fish Physiology and Biochemistry, 43 (4). pp. 1043-1054.

Califano, Gianmaria, Castanho, Sara, Soares, Florbela, Ribeiro, Laura, Cox, Cymon J., Rodrigues da Mata, Leonardo, and Costa, Rodrigo (2017) Molecular taxonomic profiling of bacterial communities in a gilthead seabream (Sparus aurata) hatchery. Frontiers In Microbiology, 8. 204.

Chang, Gouliang, Wu, Xugan, Cheng, Yongxu, Zeng, Chaoshu, and Yu, Zhiyong (2017) Reproductive performance, offspring quality, proximate and fatty acid composition of normal and precocious Chinese mitten crab Eriocheir sinensis. Aquaculture, 469. pp. 137-143.

Cole, Andrew J., Paul, Nicholas, De Nys, Rocky, and Roberts, David A. (2017) Good for sewage treatment and good for agriculture: algal based compost and biochar. Journal of Environmental Management, 200. pp. 105-113.

Cole, Andrew J., Vucko, Matthew J., and de Nys, Rocky (2017) A comparative assessment on how molasses and CO2 gas prevent carbon limitation in the large-scale culture of freshwater macroalgae. Algal Research, 27. pp. 215-222.

Cole, Andrew, Dinburg, Yakov, Haynes, Brian S., He, Yaya, Herskowitz, Moti, Jazrawi, Christopher, Landau, Miron, Liang, Xiao, Magnusson, Marie, Maschmeyer, Thomas, Masters, Anthony F., Meiri, Nora, Neveux, Nicolas, de Nys, Rocky, Paul, Nicholas, Rabaev, Moshe, Vidruk-Nehemya, Roxana, and Yuen, Alexander K.L. (2016) From macroalgae to liquid fuel via waste-water remediation, hydrothermal upgrading, carbon dioxide hydrogenation and hydrotreating. Energy & Environmental Science, 9 (5). pp. 1828-1840.

Cole, Andrew J., Neveux, Nicolas, Whelan, Anna, Morton, Jeff, Vis, Mark, de Nys, Rocky, and Paul, Nicholas A. (2016) Adding value to the treatment of municipal wastewater through the intensive production of freshwater macroalgae. Algal Research, 20. pp. 100-109.

Costello, Christopher, Ovando, Daniel, Clavelle, Tyler, Kent Strauss, C., Hilborn, Ray, Melnychuk, Michael C., Branch, Trevor A., Gaines, Steven D., Szuwalski, Cody S., Cabral, Reniel B., Rader, Douglas N., and Leland, Amanda (2016) Global fishery prospects under contrasting management regimes. Proceedings of the National Academy of Sciences of the United States of America, 113 (18). pp. 5125-5129.

Collins, Geoffrey Mark, Clark, Timothy Darren, and Carton, Alexander Guy (2016) Physiological plasticity v. inter-population variability: understanding drivers of hypoxia tolerance in a tropical estuarine fish. Marine and Freshwater Research, 67 (10). pp. 1575-1582.

Carl, Christina, Lawton, Rebecca J., Paul, Nicholas A., and de Nys, Rocky (2016) Reproductive output and productivity of filamentous tropical Ulva over time. Journal of Applied Phycology, 28 (1). pp. 429-438.

Cole, Andrew J., Roberts, David A., Garside, Alan L., de Nys, Rocky, and Paul, Nicholas A. (2016) Seaweed compost for agricultural crop production. Journal of Applied Phycology, 28 (1). pp. 629-642.

Cabral, Reniel B., Gaines, Steven D., Lim, May T., Atrigenio, Michael P., Mamauag, Samuel S., Pedemonte, Gerold C., and Aliño, Porfirio M. (2016) Siting marine protected areas based on habitat quality and extent provides the greatest benefit to spatially structured metapopulations. Ecosphere, 7 (11). e01533.

Carl, Christina, Magnusson, Marie, Paul, Nicholas A., and de Nys, Rocky (2016) The yield and quality of multiple harvests of filamentous Ulva tepida. Journal of Applied Phycology, 28 (5). pp. 2865-2873.

Cyrus, Mark, Bolton, John J., and Macey, Brett M. (2015) The role of the green seaweed Ulva as a dietary supplement for full life-cycle grow-out of Tripneustes gratilla. Aquaculture, 446. pp. 187-197.

Cyrus, M.D., Bolton, J.J., Scholtz, R., and Macey, B. (2014) The advantages of Ulva (Chlorophyta) as an additive in sea urchin formulated feeds: effects on palatability, consumption and digestibility. Aquaculture Nutrition, 21 (5). pp. 578-591.

Cyrus, Mark D., Bolton, John J., De Wet, Lourens, and Macey, Brett M. (2013) The development of a formulated feed containing Ulva (Chlorophyta) to promote rapid growth and enhanced production of high quality roe in the sea urchin Tripneustes gratilla (Linnaeus). Aquaculture Research, 45 (1). pp. 159-176.

Costa, Rafael, Yasumaru, Fanny, and Lemos, Daniel (2010) Nursery performance of the pink shrimp Farfantepenaeus paulensis (Crustacea: Decapoda: Penaeidae) postlarvae in different salinities. Zoologia, 27 (3). pp. 317-323.

D

De Vos, Bas C., Cyrus, Mark D., Bolton, John J., and Macey, Brett M. (2024) Effect of basket height and stocking density on production of the sea urchin Tripneustes gratilla: insights and recommendations. Aquaculture International. (In Press)

Donelson, Jennifer M., Romans, Pascal, Yamanaka, Sakuto, Kinoshita, Masato, and Roux, Natasha (2023) Anemonefish Husbandry. In: Laudet, Vincent, and Ravasi, Timothy, (eds.) Evolution, Development and Ecology of Anemonefishes: Model Organisms for Marine Science. CRC Press, Boca Raton, Florida, USA, pp. 237-251.

De Vos, Bas C., Cyrus, Mark D., Macey, Brett M., Batik, Theodore, and Bolton, John J. (2023) Combining computer vision and standardised protocols for improved measurement of live sea urchins for research and industry. Aquaculture, Fish and Fisheries, 3 (6). pp. 507-517.

Domingos, Jose A., Goldsbury, Julie A., Bastos Gomes, Giana, Smith, Brett G., Tomlinson, Christopher, Bade, Tim, Sander, Corey, Forrester, Justin, and Jerry, Dean R. (2021) Genotype by environment interactions of harvest growth traits for barramundi (Lates calcarifer) commercially farmed in marine vs. freshwater conditions. Aquaculture, 532. 735989.

Domingos, Jose A., Shen, Xueyan, Terence, Celestine, Senapin, Saengchan, Dong, Ha Thanh, Tan, Marie R., Gibson-Kueh, Susan, and Jerry, Dean R. (2021) Scale Drop Disease Virus (SDDV) and Lates calcarifer Herpes Virus (LCHV) coinfection downregulate immune-relevant pathways and cause splenic and kidney necrosis in barramundi under commercial farming conditions. Frontiers in Genetics, 12. 666897.

Dam, Chinh Thi My, Booth, Mark, Pirozzi, Igor, Salini, Michael, Smullen, Richard, Ventura, Tomer, and Elizur, Abigail (2020) Alternative feed raw materials modulate intestinal microbiota and its relationship with digestibility in Yellowtail Kingfish Seriola lalandi. Fishes, 5 (2). 14.

Dam, Chinh Thi My, Ventura, Tomer, Booth, Mark, Pirozzi, Igor, Salini, Michael, Smullen, Richard, and Elizur, Abigail (2020) Intestinal transcriptome analysis highlights key differentially expressed genes involved in nutrient metabolism and digestion in yellowtail kingfish (Seriola lalandi) fed terrestrial animal and plant proteins. Genes, 11 (6). 621.

Dam, Chinh T.M., Elizur, Abigail, Ventura, Tomer, Salini, Michael, Smullen, Richard, Pirozzi, Igor, and Booth, Mark (2019) Apparent digestibility of raw materials by yellowtail kingfish (Seriola lalandi). Aquaculture, 511. 734233.

Diedrich, Amy, Blythe, Jessica, Petersen, Elizabeth, Euriga, Epsi, Fatchiya, Anna, Shimada, Takahiro, and Jones, Clive (2019) Socio-economic drivers of adoption of small-scale aquaculutre in Indonesia. Sustainability, 11 (6). 1543.

do Prado, Fernanda Dotti, Vera, Manuel, Hermida, Miguel, Bouza, Carmen, Pardo, Belén G., Vilas, Román, Blanco, Andrés, Fernández, Carlos, Maroso, Francesco, Maes, Gregory E., Turan, Cemal, Volckaert, Filip A.M., Taggart, John B., Carr, Adrian, Ogden, Rob, Nielsen, Einar Eg, Aquatrace, Consortium, and Martínez, Paulino (2018) Parallel evolution and adaptation to environmental factors in a marine flatfish: implications for fisheries and aquaculture management of the turbot (Scophthalmus maximus). Evolutionary Applications, 11 (8). pp. 1322-1341.

Domingos, Jose A., Budd, Alyssa M., Banh, Quyen Q., Goldsbury, Julie A., Zenger, Kyall R., and Jerry, Dean R. (2018) Sex-specific dmrt1 and cyp19a1 methylation and alternative splicing in gonads of the protandrous hermaphrodite barramundi. PLoS ONE, 13 (9). e0204182.

Duy, Nguyen Dinh Quang, Francis, David S., and Southgate, Paul C. (2017) The nutritional value of live and concentrated micro-algae for early juveniles of sandfish, Holothuria scabra. Aquaculture, 473. pp. 97-104.

Duy, Nguyen Dinh Quang, Francis, David S., and Southgate, Paul C. (2016) Development of hyaline spheres in late auriculariae of sandfish, Holothuria scabra: is it a reliable indicator of subsequent performance? Aquaculture, 465. pp. 144-151.

Delghandi, M., Goddard, S., Jerry, D.R., Dao, H.T., Al Hinai, M.S.N., Al-Amry, W., and Al-Marzouqi, A. (2016) Novel genomic microsatellite markers for genetic population and diversity studies of tropical scalloped spiny lobster (Panulirus homarus) and their potential application in related Panulirus species. Genetics and Molecular Research, 15 (2). pp. 1-5.

E

Ericson, Jessica A., Venter, Leonie, Welford, Mena R.V., Kumanan, Karthiga, Alfaro, Andrea C., and Ragg, Norman L.C. (2022) Effects of seawater temperature and acute Vibrio sp. challenge on the haemolymph immune and metabolic responses of adult mussels (Perna canaliculus). Fish and Shellfish Immunology, 128. pp. 664-675.

Elhag, Abdelrahman Ibrahim, Rahmah, Sharifah, Rasid, Rasina Abdul, Shahin, Sharif, Noor, Gusti Afiz Gusti Ruslan, Muda, Mohd Sabri, Ibrahim, Mohd Zaidi, Ishak, Sairatul Dahlianis, Loh, Jiun-Yan, Amornsakun, Thumronk, Nhan, Hua Thai, Chen, Young-Mao, and Liew, Hon Jung (2022) Fatty acids in the inedible parts of jade perch Scortum barcoo. Aquaculture International, 30. pp. 2263-2277.

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Joyce, Melissa K., and Pirozzi, Igor (2016) Using stable isotope analysis to determine the contribution of naturally occurring pond biota and supplementary feed to the diet of farmed Australian freshwater crayfish, redclaw (Cherax quadricarinatus). International Aquatic Research , 8 (3). pp. 1-13.

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Khalilisamani, Nima, Thomson, Peter, Raadsma, Herman Willem, and Khatkar, Mehar Singh (2022) Estimating heritability using family-pooled phenotypic and genotypic data: a simulation study applied to aquaculture. Heredity, 128 (3). pp. 178-186.

Kinley, Robert D., Martinez-Fernandez, Gonzalo, Matthews, Melissa K., de Nys, Rocky, Magnusson, Marie, and Tomkins, Nigel W. (2020) Mitigating the carbon footprint and improving productivity of ruminant livestock agriculture using a red seaweed. Journal of Cleaner Production, 259.

Konovalov, Dmitry A., Saleh, Alzayat, Domingos, Jose A., White, Ron D., and Jerry, Dean R. (2018) Estimating mass of harvested Asian seabass Lates calcarifer from images. World Journal of Engineering and Technology, 6 (3). pp. 15-23.

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Kishore, Pranesh, and Southgate, Paul C. (2016) A detailed description of pearl-sac development in the black-lip pearl oyster, Pinctada margaritifera (Linnaeus 1758). Aquaculture Research, 47 (7). pp. 2215-2226.

Karthikeyan, Obulisamy Parthiba, Chidambarampadmavathy, Karthigeyan, Nadarjan, Saravanan, and Heimann, Kirsten (2016) Influence of nutrients on oxidation of low level methane by mixed methanotrophic consortia. Environmental Science and Pollution Research, 23 (5). pp. 4346-4357.

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Leahy, Susannah M., Jerry, Dean R., Wedding, Brett B.C., Robins, Julie, Wright, Carole L., Sadekov, Aleksey, David, Stephen B., Jones, David B., Williams, Samuel M., Grauf, Steve, Pavich, Luke, McLennan, Mark, Sellini, Michelle J., Goldsbury, Julie A., and Saunders, Richard J. (2023) Multimethod approach to advance provenance determination of fish in stocked systems. Canadian Journal of Fisheries and Aquatic Sciences, 80. pp. 1410-1424.

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Liyanage, D.S., Lee, Sukkyoung, Yang, Hyerim, Lim, Chaehyeon, Omeka, W.K.M., Sandamalika, W.M. Gayashani, Udayantha, H.M.V., Kim, Gaeun, Ganeshalingam, Subothini, Jeong, Taehyug, Oh, Seong-Rip, Won, Seung-Hwan, Koh, Hyoung-Bum, Kim, Mun-Kwan, Jones, David B., Massault, Cecile, Jerry, Dean R., and Lee, Jehee (2022) Genome-wide association study of VHSV-resistance trait in Paralichthys olivaceus. Fish and Shellfish Immunology, 124. pp. 391-400.

Lee, Po-Tsang, Yamamoto, Fernando Y., Low, Chen-Fei, Loh, Jiun Yan, and Chong, Chou-Min (2021) Gut Immune System and the Implications of Oral-Administered Immunoprophylaxis in Finfish Aquaculture. Frontiers in Immunology, 12. 773193.

Liu, Fang, Shi, Wenyuan, Ye, Haihui, Zeng, Chaoshu, and Zhu, Zhihuang (2021) Insulin-like androgenic gland hormone 1 (IAG1) regulates sexual differentiation in a hermaphrodite shrimp through feedback to neuroendocrine factors. General and Comparative Endocrinology, 303. 113706.

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Loh, Jiun Yan, Chan, Hor Kuan, Yam, Hok Chai, In, Lionel Lian Aun, and Lim, Crystale Siew Ying (2020) An overview of the immunomodulatory effects exerted by probiotics and prebiotics in grouper fish. Aquaculture International, 28. pp. 729-750.

Liu, Angela, Pirozzi, Igor, Codabaccus, Basseer, Hines, Barney, Simon, Cedric, Sammut, Jesmond, and Booth, Mark (2019) Digestible choline requirement of juvenile yellowtail kingfish (Seriola lalandi). Aquaculture, 509. pp. 209-220.

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