A

Arbon, P.M., Andrade Martinez, M., Jerry, D.R., and Condon, K. (2024) Towards a 'systems' approach for viral challenge experiments in shrimp: Reporting guidelines for publication. Reviews in Aquaculture. (In Press)

Arbon, P.M., Condon, K., Andrade Martinez, M., and Jerry, D.R. (2022) Molecular detection of six viral pathogens from Australian wild sourced giant black tiger shrimp (Penaeus monodon) broodstock. Aquaculture, 548. 737651.

Aquino, Jon Irish, Elliott, Lisa, Zeng, Chaoshu, and Paris, Damien B.B.P. (2022) Recent developments in male fertility evaluation, sperm cryopreservation and artificial fertilisation, and their potential application to decapod crustacean aquaculture. Reviews in Aquaculture, 14 (2). pp. 848-889.

Amira, Kafia Islam, Rahman, Mohammad Redwanur, Sikder, Suchandan, Khatoon, Helen, Afruj, Jinat, Haque, Mohammad Ekramul, and Minhaz, Tashrif Mahmud (2021) Data on Growth, survivability, water quality and hemato-biochemical indices of Nile Tilapia (Oreochromis niloticus) fry fed with selected marine microalgae. Data in Brief, 38. 107422.

Arbon, Phoebe M., Silva, Catarina N.S., Jones, David B., Jaccoud, Damian, Gervis, Mark, Jerry, Dean R., and Strugnell, Jan M. (2021) Development and validation of a SNP-based genotyping tool for pedigree establishment in Australian greenlip abalone Haliotis laevigata Donovan, 1808. Aquaculture Reports, 20. 100746.

Abualreesh, Muyassar, Myers, Jaelen, Gurbatow, Jeremy, Johnson, Andrew, Xing, De, Wang, Jinhai, Li, Shangjia, Coogan, Michael, Vo, Khoi, El Husseini, Nour, Creamer, David, Dunham, Rex A., and Butts, Ian A.E. (2021) Development of an effective cryopreservation protocol for Blue Catfish oogonia. North American Journal of Aquaculture, 83 (4). pp. 336-345.

Amira, Kafia Islam, Rahman, Mohammad Redwanur, Khatoon, Helena, Sikder, Suchandan, Islam, Skm Azizul, Afruj, Jinat, Jamal, Foujia, and Haque, Mohammad Ekramul (2021) Effects of microalgae inoculated diet on growth performance and blood parameters of Nile tilapia (Oreochromis niloticus). Bangladesh Journal of Fisheries, 33 (2). pp. 243-254.

Angell, Alex, de Nys, Rocky, Mangott, Arnold, and Vucko, Matthew J. (2018) The effects of concentration and supplementation time of natural and synthetic sources of astaxanthin on the colouration of the prawn Penaeus monodon. Algal Research, 35. pp. 577-585.

Angell, Alex R., Paul, Nicholas A., and de Nys, Rocky (2017) A comparison of protocols for isolating and concentrating protein from the green seaweed Ulva ohnoi. Journal of Applied Phycology, 29 (2). pp. 1011-1026.

Angell, Alex R., Mata, Leonardo, de Nys, Rocky, and Paul, Nicholas A. (2016) The protein content of seaweeds: a universal nitrogen-to-protein conversion factor of five. Journal of Applied Phycology, 28 (1). pp. 511-524.

Amoroso, G., Cobcroft, J.M., Adams, M.B., Ventura, T., and Carter, C. G. (2016) Concurrence of lower jaw skeletal anomalies in triploid Atlantic salmon (Salmo salar L.) and the effect on growth in freshwater. Journal of Fish Diseases, 39 (12). pp. 1509-1521.

Albalat, Amaya, Nadler, Lauren E., Foo, Nicholas, Dick, James R., Watts, Andrew J.R., Philp, Heather, Neil, Douglas M., and Monroig, Oscar (2016) Lipid composition of oil extracted from wasted Norway lobster (Nephrops norvegicus) heads and comparison with oil extracted from Antarctic krill (Euphasia superba). Marine Drugs, 14 (12). 219. pp. 1-13.

Amoroso, Gianluca, Ventura, Tomer, Cobcroft, Jennifer M., Adams, Mark B., Elizur, Abigail, and Carter, Chris (2016) Multigenic delineation of lower jaw deformity in triploid Atlantic salmon (Salmo salar L.). PLoS ONE, 11 (12). e0168454. pp. 1-21.

Angell, Alex R., Angell, Simon F., de Nys, Rocky, and Paul, Nicholas A. (2016) Seaweed as a protein source for mono-gastric livestock. Trends in Food Science and Technology, 54. pp. 74-84.

Amoroso, G., Adams, M.B., Ventura, T., Carter, C.G., and Cobcroft, J.M. (2016) Skeletal anomaly assessment in diploid and triploid juvenile Atlantic salmon (Salmo salar L.) and the effect of temperature in freshwater. Journal of Fish Diseases, 39 (4). pp. 449-466.

B

Bansemer, Matthew S., Salini, Michael J., Nankervis, Leo, and Stone, David A.J. (2023) Reducing dietary wild derived fishmeal inclusion levels in production diets for large yellowtail kingfish (Seriola lalandi). Aquaculture, 572. 739487.

Budd, Alyssa M., Guppy, Jarrod L., Thepot, Valentin, Domingos, Jose A., and Jerry, Dean R. (2022) Delayed effect of low rearing temperature on gonadal DNA methylation in juvenile barramundi (Lates calcarifer). Aquaculture, 560. 738541.

Brink-Hull, M., Cyrus, M.D., Macey, B.M., Rhode, C., Hull, K.L., and Roodt-Wilding, R. (2022) Dietary effects on the reproductive performance of the sea urchin Tripneustes gratilla l: Implications for broodstock conditioning. Aquaculture, 552. 738035.

Brink-Hull, M., Cyrus, M.D., Macey, B.M., Rhode, C., Hull, K.L., and Roodt-Wilding, R. (2022) Dietary effects on the reproductive performance of the sea urchin Tripneustes gratilla ll: Implications for offspring performance. Aquaculture, 553. 738034.

Borkens, Yannick, and Koppe, Paul (2022) Mytilicola orientalis. Aquaculture International, 30. pp. 2741-2749.

Booth, Mark A., and Pirozzi, Igor (2022) The digestible histidine requirement of juvenile yellowtail kingfish Seriola lalandi. Aquaculture, 548 (Part 1). 737543.

Banh, Quyen Q.T., Domingos, Jose A., Pinto, Ricardo C.C., Nguyen, Kien T., and Jerry, Dean R. (2021) Dietary 17 β-oestradiol and 17 α-ethinyloestradiol alter gonadal morphology and gene expression of the two sex-related genes, dmrt1 and cyp19a1a, in juvenile barramundi (Lates calcarifer Bloch). Aquaculture Research, 52 (4). pp. 1414-1430.

Banh, Quyen Q. T., Guppy, Jarrod L., Domingos, Jose A., Budd, Alyssa M., Pinto, Ricardo C. C., Marc, Adrien F., and Jerry, Dean R. (2021) Induction of precocious females in the protandrous barramundi (Lates calcarifer) through implants containing 17β-estradiol - effects on gonadal morphology, gene expression and DNA methylation of key sex genes. Aquaculture, 539. 736601.

Barton, Jonathan (2020) Mitigating the impact of the Acropora-eating flatworm, Prosthiostomum acroporae on captive Acropora coral colonies. PhD thesis, James Cook University.

Bansemer, M.S., Stone, D.A.J., Skordas, P, Currie, K., Crowe, B., Nankervis, L., Salini, M., and UNSPECIFIED (2019) 3.1.3.1. Manuscript - Reducing dietary wild derived fish meal inclusion levels in production diets for large Yellowtail Kingfish (Seriola lalandi) (N5/N2; Output 2a) [In: Stone, D.A.J., Booth, M.A. and Clarke, S.M. (eds).Growing a Profitable, Innovative and Collaborative Australian Yellowtail Kingfish Aquaculture Industry: Bringing ‘White’ Fish to the Market (DAWR Grant Agreement RnD4Profit-14-01-027)]. Report Section. South Australian Research and Development Institute (SARDI), Adelaide, SA, Australia.

Berry, Sarah E., Wade, Nicholas, Cedric, Simon, Foote, Andrew, Jerry, Dean R., and Wade, Nicholas M. (2019) Evaluation of baseline haemolymph biochemistry, volume and total body energetics to determine an accurate condition index in the black tiger shrimp, Penaeus monodon. Comparative Biochemistry and Physiology-Part B: biochemistry & molecular biology, 228. pp. 1-9.

Barton, Jonathan A., Hutson, Kate S., Bourne, David G., Humphrey, Craig, Dybala, Cat, and Rawlinson, Kate A. (2019) The life cycle of the Acropora coral-eating flatworm (AEFW), Prosthiostomum acroporae; the influence of temperature and management guidelines. Frontiers in Marine Science, 6. 524.

Brazenor, Alexander K.,, Bertozzi, Terry, Miller, Terrence L., Whittington, Ian D., and Hutson, Kate S. (2018) DNA profiling reveals Neobenedenia girellae as the primary culprit in global fisheries and aquaculture. Molecular Phylogenetics and Evolution, 129. pp. 130-137.

Bao, Chenchang, Yang, Yanan, Zeng, Chaoshu, Huang, Huiyang, and Ye, Haihui (2018) Identifying neuropeptide GPCRs in the mud crab, Scylla paramamosain, by combinatorial bioinformatics analysis. General and Comparative Endocrinology, 269. pp. 122-130.

Bastos Gomes, G., Jerry, D.R., Miller, T.L., and Hutson, K.S. (2017) Current status of parasitic ciliates Chilodonella spp. (Phyllopharyngea: Chilodonellidae) in freshwater fish aquaculture. Journal of Fish Diseases, 40 (5). pp. 703-715.

Bastos Gomes, Giana, Miller, Terrence L., Vaughan, David B., Jerry, Dean R., McCowan, Christina, Bradley, Tracey L., and Hutson, Kate S. (2017) Evidence of multiple species of Chilodonella (Protozoa, Ciliophora) infecting Australian farmed freshwater fishes. Veterinary Parasitology, 237. pp. 8-16.

Barton, Jonathan A., Willis, Bette L., and Hutson, Kate S. (2017) Coral propagation: a review of techniques for ornamental trade and reef restoration. Reviews in Aquaculture, 9 (3). pp. 238-256.

Banh, Quyen Q., Domingos, Jose A., Zenger, Kyall R., and Jerry, Dean R. (2017) Morphological changes and regulation of the genes dmrt1 and cyp11b during the sex differentiation of barramundi (Lates calcarifer Bloch). Aquaculture, 479. pp. 75-84.

Budd, Alyssa M., Hinton, Tracey M., Tonks, Mark, Cheers, Sue, and Wade, Nicholas M. (2017) Rapid expansion of pigmentation genes in penaeid shrimp with absolute preservation of function. The Journal of Experimental Biology, 220. pp. 4109-4118.

Bastos Gomes, Giana, Hutson, Kate S., Domingos, Jose A., Chung, Catherine, Hayward, Scott, Miller, Terrance L., and Jerry, Dean R. (2017) Use of environmental DNA (eDNA) and water quality data to predict protozoan parasites outbreaks in fish farms. Aquaculture, 479. pp. 467-473.

Bylemans, Jonas, Maes, Gregory E., Diopere, Eveline, Cariani, Alessia, Senn, Helen, Taylor, Martin I., Helyar, Sarah, Bargelloni, Luca, Bonaldo, Alessio, Carvalho, Gary, Guarniero, Ilaria, Komen, Hans, Martinsohn, Jann Th., Nielsen, Einar E., Tinti, Fausto, Volckaert, Filip A.M., and Ogden, Rob (2016) Evaluating genetic traceability methods for captive‑bred marine fish and their applications in fisheries management and wildlife forensics. Aquaculture Environment Interactions , 8. pp. 131-145.

Bolton, John J., Cyrus, Mark, Brand, Morgan J., Joubert, Michael, and Macey, Brett M. (2016) Why grow Ulva? Its potential role in the future of aquaculture. Perspectives in Phycology, 3 (3). pp. 113-120.

C

Chew, Xian Zhe, Gibson-Kueh, Susan, Jerry, Dean R., and Shen, Xueyan (2023) Comparison of intestinal bacterial communities in asymptomatic and diseased Asian seabass (Lates calcarifer) with chronic enteritis and mixed bacterial infections. Aquaculture, 572. 739516.

Candebat, Caroline Lordes, Eddie, Thibault, Marc, Adrien Francois, Fernando, Fernando, and Nankervis, Leo (2023) Exploring the physiological plasticity of giant grouper (Epinephelus lanceolatus) to dietary sulfur amino acids and taurine to measure dietary requirements and essentiality. Fish Physiology and Biochemistry. (In Press)

Chen, Jun Yu, Zeng, Chaoshu, and Cobcroft, Jennifer M. (2023) Year-Round Spawning, Filial Cannibalism, and Embryonic and Larval Development of the Coral Reef Fish Orchid Dottyback, Pseudochromis fridmani. Fishes, 8 (9). 451.

Chew, Xian Zhe, and Gibson-Kueh, Susan (2023) The haematology of clinically healthy, farmed juvenile Asian seabass (Lates calcarifer Bloch)-reference intervals, and indicators of subclinical disease. Journal of Fish Diseases. (In Press)

Candebat, Caroline Lourdes, Stephens, Frances, Booth, Mark A., Fernando, Fernando, Lopata, Andreas, and Pirozzi, Igor (2022) Adequate levels of dietary sulphur amino acids impart improved liver and gut health in juvenile yellowtail kingfish (Seriola lalandi). British Journal of Nutrition, 129. pp. 1289-1312.

Chen, Jun Yu, Zeng, Chaoshu, and Cobcroft, Jennifer M. (2022) Digestive system ontogeny and the effects of weaning time on larval survival, growth and pigmentation development of orchid dottyback Pseudochromis fridmani. Aquaculture, 549. 737737.

Chaturvedi, Iti, Cambria, Erik, Chen, Qian, and McConnell, Desmond (2022) Landmark calibration for facial expressions and fish classification. Signal, Image and Video Processing, 16 (2). pp. 377-384.

Chen, Jun Yu (2021) Captive breeding of orchid dottyback Pseudochromis fridmani: reproduction, ontogeny and larval feeding regime. PhD thesis, James Cook University.

Camus, Thomas, Rolla, Lucrezia, Jiang, Jufeng, and Zeng, Chaoshu (2021) Effects of microalgal food quantity on several productivity-related parameters of the calanoid copepod Bestiolina similis (Calanoida: Paracalanidae). Frontiers in Marine Science, 8. 812240.

Candebat, Caroline Lourdes (2021) Optimizing dietary specifications for yellowtail kingfish, Seriola lalandi: requirements and interactions of sulfur amino acids and taurine. PhD thesis, James Cook University.

Cabral, Reniel B., Bradley, Darcy, Mayorga, Juan, Goodell, Whitney, Friedlander, Alan M., Sala, Enric, Costello, Christopher, and Gaines, Steven D. (2021) Reply to Hilborn: We agree that MPAs can improve fish catch in the South and Southeast Asia. Proceedings of the National Academy of Sciences of the United States of America, 118 (17). e2100660118.

Cabral, Reniel B., Bradley, Darcy, Mayorga, Juan, Goodell, Whitney, Friedlander, Alan M., Sala, Enric, Costello, Christopher, and Gaines, Steven D. (2021) Reply to Ovando et al.: How connected are global fisheries? Proceedings of the National Academy of Sciences of the United States of America, 118 (23). e2100364118.

Chen, Jun Yu, and Zeng, Chaoshu (2021) Transition to Artemia feeding phase for orchid dottyback Pseudochromis fridmani larvae: establishing suitable prey shift time and strategy. Aquaculture, 545. 737180.

Chen, Jun Yu, and Zeng, Chaoshu (2021) The effects of live prey and greenwater on the early larval rearing of orchid dottyback Pseudochromis fridmani. Aquaculture, 543. 737008.

Candebat, Caroline L., Booth, Mark A., and Pirozzi, Igor (2021) The sulfur amino acid requirements of juvenile Yellowtail Kingfish (Seriola lalandi). Aquaculture, 534. 736234.

Candebat, Caroline Lourdes, Booth, Mark, Codabaccus, Mohamed Basseer, and Pirozzi, Igor (2020) Dietary methionine spares the requirement for taurine in juvenile Yellowtail Kingfish (Seriola lalandi). Aquaculture, 522. 735090.

Cobcroft, Jennifer, Bell, Rob, Fitzgerald, Jessica, and Jerry, Dean (2020) Northern Australia aquaculture situational analysis. Report. CRCNA, Townsville, QLD, Australia.

Chen, Jun Yu, Zeng, Chaoshu, Jerry, Dean R., and Cobcroft, Jennifer M. (2020) Recent advances of marine ornamental fish larviculture: broodstock reproduction, live prey and feeding regimes, and comparison between demersal and pelagic spawners. Reviews in Aquaculture, 12 (3). pp. 1518-1541.

Chen, Daming, Liu, Fang, Zhu, Zhihuang, Lin, Qi, Zeng, Chaoshu, and Ye, Haihui (2019) Ontogenetic development of gonads and external sexual characters of the protandric simultaneous hermaphrodite peppermint shrimp, Lysmata vittata (Caridea: Hippolytidae). PLoS ONE, 14 (4). e0215406.

Cyrus, Mark D., Bolton, John J., and Macey, Brett M. (2019) The use of stable isotope ratios δ 13 C and δ 15 N to track the incorporation of Ulva and other important dietary ingredients into the gonads of the sea urchin Tripneustes gratilla. Aquaculture Nutrition, 26 (1). pp. 174-185.

Chen, Zhigang, Wang, Guizhong, Zeng, Chaoshu, and Wu, Lisheng (2018) Comparative study on the effects of two diatoms as diets on planktonic calanoid and benthic harpacticoid copepods. Journal of Experimental Zoology, Part A, 329 (3). pp. 140-148.

Cole, Andrew, Praeger, Christina, Mannering, Thomas, de Nys, Rocky, and Magnusson, Marie (2018) Hot and bright: thermal and light environments for the culture of Oedogonium intermedium and the geographical limits for large-scale cultivation in Australia. Algal Research, 34 (2018). pp. 209-216.

Cabral, Reniel B., and Geronimo, Rollan C. (2018) How important are coral reefs to food security in the Philippines? Diving deeper than national aggregates and averages. Marine Policy, 91. pp. 136-141.

Castanho, S., Califano, G., Soares, F., Costa, R., Mata, L., Pousão-Ferreira, P., and Ribeiro, L. (2017) The effect of live feeds bathed with the red seaweed Asparagopsis armata on the survival, growth and physiology status of Sparus aurata larvae. Fish Physiology and Biochemistry, 43 (4). pp. 1043-1054.

Califano, Gianmaria, Castanho, Sara, Soares, Florbela, Ribeiro, Laura, Cox, Cymon J., Rodrigues da Mata, Leonardo, and Costa, Rodrigo (2017) Molecular taxonomic profiling of bacterial communities in a gilthead seabream (Sparus aurata) hatchery. Frontiers In Microbiology, 8. 204.

Chang, Gouliang, Wu, Xugan, Cheng, Yongxu, Zeng, Chaoshu, and Yu, Zhiyong (2017) Reproductive performance, offspring quality, proximate and fatty acid composition of normal and precocious Chinese mitten crab Eriocheir sinensis. Aquaculture, 469. pp. 137-143.

Cole, Andrew J., Paul, Nicholas, De Nys, Rocky, and Roberts, David A. (2017) Good for sewage treatment and good for agriculture: algal based compost and biochar. Journal of Environmental Management, 200. pp. 105-113.

Cole, Andrew J., Vucko, Matthew J., and de Nys, Rocky (2017) A comparative assessment on how molasses and CO2 gas prevent carbon limitation in the large-scale culture of freshwater macroalgae. Algal Research, 27. pp. 215-222.

Cole, Andrew, Dinburg, Yakov, Haynes, Brian S., He, Yaya, Herskowitz, Moti, Jazrawi, Christopher, Landau, Miron, Liang, Xiao, Magnusson, Marie, Maschmeyer, Thomas, Masters, Anthony F., Meiri, Nora, Neveux, Nicolas, de Nys, Rocky, Paul, Nicholas, Rabaev, Moshe, Vidruk-Nehemya, Roxana, and Yuen, Alexander K.L. (2016) From macroalgae to liquid fuel via waste-water remediation, hydrothermal upgrading, carbon dioxide hydrogenation and hydrotreating. Energy & Environmental Science, 9 (5). pp. 1828-1840.

Cole, Andrew J., Neveux, Nicolas, Whelan, Anna, Morton, Jeff, Vis, Mark, de Nys, Rocky, and Paul, Nicholas A. (2016) Adding value to the treatment of municipal wastewater through the intensive production of freshwater macroalgae. Algal Research, 20. pp. 100-109.

Costello, Christopher, Ovando, Daniel, Clavelle, Tyler, Kent Strauss, C., Hilborn, Ray, Melnychuk, Michael C., Branch, Trevor A., Gaines, Steven D., Szuwalski, Cody S., Cabral, Reniel B., Rader, Douglas N., and Leland, Amanda (2016) Global fishery prospects under contrasting management regimes. Proceedings of the National Academy of Sciences of the United States of America, 113 (18). pp. 5125-5129.

Collins, Geoffrey Mark, Clark, Timothy Darren, and Carton, Alexander Guy (2016) Physiological plasticity v. inter-population variability: understanding drivers of hypoxia tolerance in a tropical estuarine fish. Marine and Freshwater Research, 67 (10). pp. 1575-1582.

Carl, Christina, Lawton, Rebecca J., Paul, Nicholas A., and de Nys, Rocky (2016) Reproductive output and productivity of filamentous tropical Ulva over time. Journal of Applied Phycology, 28 (1). pp. 429-438.

Cole, Andrew J., Roberts, David A., Garside, Alan L., de Nys, Rocky, and Paul, Nicholas A. (2016) Seaweed compost for agricultural crop production. Journal of Applied Phycology, 28 (1). pp. 629-642.

Cabral, Reniel B., Gaines, Steven D., Lim, May T., Atrigenio, Michael P., Mamauag, Samuel S., Pedemonte, Gerold C., and Aliño, Porfirio M. (2016) Siting marine protected areas based on habitat quality and extent provides the greatest benefit to spatially structured metapopulations. Ecosphere, 7 (11). e01533.

Carl, Christina, Magnusson, Marie, Paul, Nicholas A., and de Nys, Rocky (2016) The yield and quality of multiple harvests of filamentous Ulva tepida. Journal of Applied Phycology, 28 (5). pp. 2865-2873.

Cyrus, Mark, Bolton, John J., and Macey, Brett M. (2015) The role of the green seaweed Ulva as a dietary supplement for full life-cycle grow-out of Tripneustes gratilla. Aquaculture, 446. pp. 187-197.

Cyrus, M.D., Bolton, J.J., Scholtz, R., and Macey, B. (2014) The advantages of Ulva (Chlorophyta) as an additive in sea urchin formulated feeds: effects on palatability, consumption and digestibility. Aquaculture Nutrition, 21 (5). pp. 578-591.

Cyrus, Mark D., Bolton, John J., De Wet, Lourens, and Macey, Brett M. (2013) The development of a formulated feed containing Ulva (Chlorophyta) to promote rapid growth and enhanced production of high quality roe in the sea urchin Tripneustes gratilla (Linnaeus). Aquaculture Research, 45 (1). pp. 159-176.

D

De Vos, Bas C., Cyrus, Mark D., Bolton, John J., and Macey, Brett M. (2024) Effect of basket height and stocking density on production of the sea urchin Tripneustes gratilla: insights and recommendations. Aquaculture International. (In Press)

Donelson, Jennifer M., Romans, Pascal, Yamanaka, Sakuto, Kinoshita, Masato, and Roux, Natasha (2023) Anemonefish Husbandry. In: Laudet, Vincent, and Ravasi, Timothy, (eds.) Evolution, Development and Ecology of Anemonefishes: Model Organisms for Marine Science. CRC Press, Boca Raton, Florida, USA, pp. 237-251.

De Vos, Bas C., Cyrus, Mark D., Macey, Brett M., Batik, Theodore, and Bolton, John J. (2023) Combining computer vision and standardised protocols for improved measurement of live sea urchins for research and industry. Aquaculture, Fish and Fisheries. (In Press)

Domingos, Jose A., Goldsbury, Julie A., Bastos Gomes, Giana, Smith, Brett G., Tomlinson, Christopher, Bade, Tim, Sander, Corey, Forrester, Justin, and Jerry, Dean R. (2021) Genotype by environment interactions of harvest growth traits for barramundi (Lates calcarifer) commercially farmed in marine vs. freshwater conditions. Aquaculture, 532. 735989.

Domingos, Jose A., Shen, Xueyan, Terence, Celestine, Senapin, Saengchan, Dong, Ha Thanh, Tan, Marie R., Gibson-Kueh, Susan, and Jerry, Dean R. (2021) Scale Drop Disease Virus (SDDV) and Lates calcarifer Herpes Virus (LCHV) coinfection downregulate immune-relevant pathways and cause splenic and kidney necrosis in barramundi under commercial farming conditions. Frontiers in Genetics, 12. 666897.

Dam, Chinh Thi My, Booth, Mark, Pirozzi, Igor, Salini, Michael, Smullen, Richard, Ventura, Tomer, and Elizur, Abigail (2020) Alternative feed raw materials modulate intestinal microbiota and its relationship with digestibility in Yellowtail Kingfish Seriola lalandi. Fishes, 5 (2). 14.

Dam, Chinh Thi My, Ventura, Tomer, Booth, Mark, Pirozzi, Igor, Salini, Michael, Smullen, Richard, and Elizur, Abigail (2020) Intestinal transcriptome analysis highlights key differentially expressed genes involved in nutrient metabolism and digestion in yellowtail kingfish (Seriola lalandi) fed terrestrial animal and plant proteins. Genes, 11 (6). 621.

Dam, Chinh T.M., Elizur, Abigail, Ventura, Tomer, Salini, Michael, Smullen, Richard, Pirozzi, Igor, and Booth, Mark (2019) Apparent digestibility of raw materials by yellowtail kingfish (Seriola lalandi). Aquaculture, 511. 734233.

Diedrich, Amy, Blythe, Jessica, Petersen, Elizabeth, Euriga, Epsi, Fatchiya, Anna, Shimada, Takahiro, and Jones, Clive (2019) Socio-economic drivers of adoption of small-scale aquaculutre in Indonesia. Sustainability, 11 (6). 1543.

do Prado, Fernanda Dotti, Vera, Manuel, Hermida, Miguel, Bouza, Carmen, Pardo, Belén G., Vilas, Román, Blanco, Andrés, Fernández, Carlos, Maroso, Francesco, Maes, Gregory E., Turan, Cemal, Volckaert, Filip A.M., Taggart, John B., Carr, Adrian, Ogden, Rob, Nielsen, Einar Eg, Aquatrace, Consortium, and Martínez, Paulino (2018) Parallel evolution and adaptation to environmental factors in a marine flatfish: implications for fisheries and aquaculture management of the turbot (Scophthalmus maximus). Evolutionary Applications, 11 (8). pp. 1322-1341.

Domingos, Jose A., Budd, Alyssa M., Banh, Quyen Q., Goldsbury, Julie A., Zenger, Kyall R., and Jerry, Dean R. (2018) Sex-specific dmrt1 and cyp19a1 methylation and alternative splicing in gonads of the protandrous hermaphrodite barramundi. PLoS ONE, 13 (9). e0204182.

Duy, Nguyen Dinh Quang, Francis, David S., and Southgate, Paul C. (2017) The nutritional value of live and concentrated micro-algae for early juveniles of sandfish, Holothuria scabra. Aquaculture, 473. pp. 97-104.

Duy, Nguyen Dinh Quang, Francis, David S., and Southgate, Paul C. (2016) Development of hyaline spheres in late auriculariae of sandfish, Holothuria scabra: is it a reliable indicator of subsequent performance? Aquaculture, 465. pp. 144-151.

Delghandi, M., Goddard, S., Jerry, D.R., Dao, H.T., Al Hinai, M.S.N., Al-Amry, W., and Al-Marzouqi, A. (2016) Novel genomic microsatellite markers for genetic population and diversity studies of tropical scalloped spiny lobster (Panulirus homarus) and their potential application in related Panulirus species. Genetics and Molecular Research, 15 (2). pp. 1-5.

E

Ericson, Jessica A., Venter, Leonie, Welford, Mena R.V., Kumanan, Karthiga, Alfaro, Andrea C., and Ragg, Norman L.C. (2022) Effects of seawater temperature and acute Vibrio sp. challenge on the haemolymph immune and metabolic responses of adult mussels (Perna canaliculus). Fish and Shellfish Immunology, 128. pp. 664-675.

Elliman, J. Ruth, and Owens, L. (2020) Confirmation that candidatus Coxiella cheraxi from redclaw crayfish (Cherax quadricarinatus) is a close relative of Coxiella burnetii, the agent of Q-fever. Letters in Applied Microbiology, 71 (3). pp. 320-326.

Estrada, Uriel Rodriguez, Yasumaru, Fanny Ayumi, Tacon, Albert, and Lemos, Daniel (2016) Cobia (Rachycentron canadum): A selected annotated bibliography on aquaculture, general biology and fisheries 1967-2015. Reviews in Fisheries Science & Aquaculture, 24 (1). pp. 1-97.

F

Fernando, Fernando, Candebat, Caroline L., Strugnell, Jan M., Andreakis, Nikolaos, and Nankervis, Leo (2022) Dietary supplementation of astaxanthin modulates skin color and liver antioxidant status of giant grouper (Epinephelus lanceolatus). Aquaculture Reports, 26. 101266.

Free, Christopher M., Cabral, Reniel B., Froehlich, Halley E., Battista, Willow, Ojea, Elena, O’Reilly, Erin, Palardy, James E., García Molinos, Jorge, Siegel, Katherine J., Arnason, Ragnar, Juinio-Meñez, Marie Antonette, Fabricius, Katharina, Turley, Carol, and Gaines, Steven D. (2022) Expanding ocean food production under climate change. Nature, 605. pp. 490-496.

Foote, Andrew, Simma, David, Khatkar, Mehar, Raadsma, Herman, Guppy, Jarrod, Coman, Gregory, Giardina, Erika, Jerry, Dean, Zenger, Kyall, and Wade, Nicholas (2019) Considerations for maintaining family diversity in commercially mass-spawned penaeid shrimp: a case study on Penaeus monodon. Frontiers in Genetics, 10. 1127.

Foote, A.R., Stratford, C.N., and Coman, G.J. (2018) Passive integrated transponder (PIT) tagging black tiger shrimp, Penaeus monodon: Applications for breeding programs. Aquaculture, 491. pp. 321-324.

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Gleadall, Ian G., Che, Leo J., and Hutchinson, Neil (2024) ‘Octopus’ parvus, Bean octopus. In: Rosa, Rui, Gleadall, Ian, Pierce, Graham, and Villanueva, Roger, (eds.) Octopus Biology and Ecology. Academic Press, Cambridge, MS, USA. (In Press)

Genodepa, Jerome, Zeng, Chaoshu, Militz, Thane A., and Southgate, Paul C. (2024) Responses of digestive enzyme profiles in newly-hatched (Zoea I) larvae of the mud crab Scylla serrata to intermittent food availability and food deprivation. Comparative Biochemistry and Physiology. Part B: Biochemistry and Molecular Biology, 269. 110906.

Giri, Nyoman Adiasmara, Irvin, Simon, Haryanti, , Sudewi, , Selamet, Bejo, Jones, Clive M., and Mujiono, (2023) Growth Response of Lobster Panulirus homarus Reared in Tanks and in Floating Net Cages Fed with Compound and Fresh Feed. Sains Malaysiana, 52 (10). pp. 2747-2759.

Glencross, Brett, Fracalossi, Débora Machado, Hua, Katheline, Izquierdo, Marisol, Ma, Kangsen, Øverland, Margareth, Robb, David, Roubach, Rodrigo, Schrama, Johan, Small, Brian, Tacon, Albert, Valente, Luisa M.P., Viana, Maria-Teresa, Xie, Shouqi, and Yakupityage, Amararatne (2023) Harvesting the benefits of nutritional research to address global challenges in the 21st century. Journal of the World Aquaculture Society, 54 (2). pp. 343-363.

Genodepa, Jerome, Zeng, Chaoshu, Militz, Thane A., and Southgate, Paul C. (2023) Influence of Live-Food (Brachionus rotundiformis) Density at First-Feeding on Digestive Enzyme Activities in Newly Hatched (Zoea I) Larvae of the Mud Crab, Scylla serrata. Journal of Shellfish Research, 42 (3). pp. 517-523.

Genodepa, Jerome, Zeng, Chaoshu, Militz, Thane A., and Southgate, Paul C. (2023) Influence of Moult Cycles on Digestive Enzyme Activities during Early Larval Stages of Panulirus ornatus. Aquaculture Research, 2023. 9956046.

Gibson-Kueh, S., Awate, S., and Schrittwieser, M (2023) The pathology of Lates calcarifer herpesviral disease—Disseminated intravascular coagulation explains mortality spikes. Journal of Fish Diseases, 46 (8). pp. 861-871.

Greco, Laura Susana Lopez, Stumpf, Liane, Timpanaro, Santiago, Cid, Abril Rebagliati, Lamberti, Matias, Battista, Ariadna, LauraTomas, Ana, and Jones, Clive M. (2022) Impact of low-cost diets on maturation of the red claw crayfish Cherax quadricarinatus: An integrative approach during a long-term study. Aquaculture, 561. 738614.

Genodepa, Jerome, Zeng, Chaoshu, Militz, Thane A., and Southgate, Paul C. (2022) Influence of Food Density on Digestive Enzyme Activities in Newly Hatched Larvae of the Spiny Lobster, Panulirus ornatus. Journal of Shellfish Research, 41 (3). pp. 381-387.

Guppy, Jarrod L., Marc, Adrien F., and Jerry, Dean R. (2022) Maturation and spawning performance of hormonally-induced precocious female barramundi (Lates calcarifer) and implications of their use in selective breeding. Aquaculture, 552. 737991.

Genodepa, Jerome, Zeng, Chaoshu, Militz, Thane A., and Southgate, Paul C. (2022) Ontogenetic variation in digestive enzyme activities within embryos and newly-hatched larvae of the tropical spiny lobster, Panulirus ornatus. Aquaculture, 548 (Part 1). 737595.

Genodepa, Jerome, Zeng, Chaoshu, Militz, Thane A., and Southgate, Paul C. (2022) Responses of digestive enzyme profiles to various scenarios of food availability in newly-hatched Stage I phyllosoma larvae of the tropical spiny lobster Panulirus ornatus. Comparative Biochemistry and Physiology-Part B: biochemistry & molecular biology, 261. 110751.

Gong, Jie, Huang, Chencui, Yu, Kun, Li, Shaojing, Zeng, Chaoshu, and Ye, Haihui (2022) The effects of feeding ration and cheliped autotomy on the growth and expression of ecdysteroid receptor in early juvenile mud crabs, Scylla paramamosain. Aquaculture Reports, 25. 101206.

Gibson-Kueh, Susan, Terence, Celestine, Chew, Xian Zhe, Uichanco, Joseph Angelo, and Shen, Xueyan (2021) PCR, in-situ hybridization, and phylogenetic analysis suggest that ‘big belly’ disease in barramundi, Lates calcarifer (Bloch), is caused by a novel Vibrio species. Journal of Fish Diseases, 44 (12). pp. 1985-1992.

Gibson-Kueh, Susan, and Uichanco, Joseph Angelo (2021) The pathology associated with putative algal toxicosis in red snapper, Lutjanus species (Bloch 1790). Journal of Fish Diseases, 44 (6). pp. 857-861.

Guppy, Jarrod L., Jones, David B., Kjeldsen, Shannon R., Le Port, Agnes, Khatkar, Mehar S., Wade, Nicholas M., Sellars, Melony J., Raadsma, Herman W., Jerry, Dean R., and Zenger, Kyall R. (2020) Development and validation of a RAD-Seq target-capture based genotyping assay for routine application in advanced black tiger shrimp (Penaeus monodon) breeding programs. BMC Genomics, 21. 541.

Glasson, Christopher R.K., Donnet, Luke, Angell, Alex, Vucko, Matthew J., Lorbeer, Andrew J., Vamvounis, George, de Nys, Rocky, and Magnusson, Marie (2019) Multiple response optimisation of the aqueous extraction of high quality ulvan from Ulva ohnoi. Bioresource Technology Reports, 7. 100262.

Gomes, Giana Bastos, Hutson, Kate S., Domingos, Jose A., Infante Villamil, Sandra, Huerlimann, Roger, Miller, Terrence L., and Jerry, Dean (2019) Parasitic protozoan interactions with bacterial microbiome in a tropical fish farm. Aquaculture, 502. pp. 196-201.

Genodepa, Jerome G., Zeng, Chaoshu, and Southgate, Paul C. (2018) Changes in digestive enzyme activities and nutrient utilization during embryonic development and starvation of newly hatched larvae of the mud crab, Scylla serrata. Aquaculture, 493. pp. 137-143.

Guppy, Jarrod L., Jones, Dave B., Jerry, Dean R., Wade, Nicholas M., Raadsma, Herman W., Huerlimann, Roger, and Zenger, Kyall R. (2018) The state of "omics" research for farmed penaeids: advances in research and impediments to industry utilization. Frontiers in Genetics, 9. 282.

Glasson, Christopher R.K., Sims, Ian M., Carnachan, Susan M., de Nys, Rocky, and Magnusson, Marie (2017) A cascading biorefinery process targeting sulfated polysaccharides (ulvan) from Ulva ohnoi. Algal Research, 27. pp. 383-391.

Gong, Jie, Huang, Chencui, Shu, Ling, Bao, Chenchang, Huang, Huiyang, Ye, Haihui, Zeng, Chaoshu, and Li, Shaojing (2016) The retinoid X receptor from mud crab: new insights into its roles in ovarian development and related signaling pathway. Scientific Reports, 6. 23654. pp. 1-13.

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Hasan, Md Mehedi, Raadsma, Herman W., Thomson, Peter C., Wade, Nicholas M., Jerry, Dean R., and Khatkar, Mehar S. (2022) Genetic parameters of color phenotypes of black tiger shrimp (Penaeus monodon). Frontiers in Genetics, 13. 1002346.

Hair, Cathy, Militz, Thane A., Daniels, Nicholas, and Southgate, Paul C. (2022) Performance of a trial sea ranch for the commercial sea cucumber, Holothuria scabra, in Papua New Guinea. Aquaculture, 547. 737500.

Hayakijkosol, Orachun, Jaroenram, Wansadaj, Owens, Leigh, and Elliman, Jennifer (2021) Reverse transcription polymerase chain reaction (RT-PCR) detection for Australian Cherax reovirus from redclaw crayfish (Cherax quadricarinatus). Aquaculture, 530. 735881.

Hua, Katheline (2021) A meta-analysis of the effects of replacing fish meals with insect meals on growth performance of fish. Aquaculture, 530. 735732.

Hair, Cathy, Militz, Thane, Daniels, Nicholas, and Southgate, Paul C. (2020) Comparison of survival, growth and burying behavior of cultured and wild sandfish (Holothuria scabra) juveniles: implications for ocean mariculture. Aquaculture, 526. 735355.

Harohau, Daykin, Blythe, Jessica, Sheaves, Marcus, and Diedrich, Amy (2020) Limits of tilapia aquaculture for rural livelihoods in the Solomon Islands. Sustainability, 12. 4592.

Hair, Cathy, Foale, Simon, Daniels, Nicholas, Minimulu, Peter, Aini, John, and Southgate, Paul C. (2020) Social and economic challenges to community-based sea cucumber mariculture development in New Ireland Province, Papua New Guinea. Marine Policy, 117. 103940.

Harohau, Daykin Otowauri (2020) Understanding the social dimensions of small-scale tilapia aquaculture in rural Solomon Islands. PhD thesis, James Cook University.

Harohau, Daykin, Blythe, Jessica, Sheaves, Marcus, and Diedrich, Amy (2020) Uneven adoption of tilapia aquaculture in rural Solomon Islands. Aquaculture International, 28. pp. 2093-2109.

Hua, Katheline, and Bureau, Dominique (2019) Estimating changes in essential amino acid requirements of rainbow trout and Atlantic salmon as a function of body weight or diet composition using a novel factorial requirement model. Aquaculture, 513. 733440.

Hua, Katheline, Suwendi, Erwin, and Bureau, Dominique P. (2019) Effect of body weight on lysine utilization efficiency in Nile Tilapia (Oreochromis niloticus). Aquaculture, 505. pp. 47-53.

Hua, Katheline, Koppe, Wolfgang, and Fontanillas, Ramon (2019) Effects of dietary protein and lipid levels on growth, body composition and nutrient utilization of Channa striata. Aquaculture, 501. pp. 368-373.

Huang, Huiyang, Huang, Chencui, Guo, Limei, Zeng, Chaoshu, and Ye, Haihui (2019) Profiles of calreticulin and Ca2+ concentration under low temperature and salinity stress in the mud crab, Scylla paramamosain. PLoS One, 14 (7). e0220405.

Hilder, Pollyanna E., Battaglene, Stephen C., Hart, Nathan S., Collin, Shaun P., and Cobcroft, Jennifer M. (2019) Retinal adaptations of southern bluefin tuna larvae: implications for culture. Aquaculture, 507. pp. 222-232.

Haller-Bull, Vanessa, and Bode, Michael (2019) Superadditive and subadditive dynamics are not inherent to the types of interacting threat. PLoS ONE, 14 (8). e0211444.

Hua, Katheline, Cobcroft, Jennifer M., Cole, Andrew, Condon, Kelly, Jerry, Dean R., Mangott, Arnold, Praeger, Christina, Vucko, Matthew J., Zeng, Chaoshu, Zenger, Kyall, and Strugnell, Jan M. (2019) The future of aquatic protein: implications for protein sources in aquaculture diets. One Earth, 1 (3). pp. 316-329.

Hutson, Kate, Cable, Joanne, Grutter, Alexandra S., Paziewska-Harris, Anna, and Barber, Iain (2018) Aquatic parasite cultures and their applications. Trends in Parasitology, 34 (12). pp. 1082-1096.

Huerlimann, Roger, Wade, Nicholas M., Gordon, Lavinia, Montenegro, Juan D., Goodall, Jake, McWilliam, Sean, Tinning, Matthew, Siemering, Kirby, Giardina, Erika, Donovan, Dallas, Sellars, Melony J., Cowley, Jeff A., Condon, Kelly, Coman, Greg J., Khatkar, Mehar S., Raadsma, Herman W., Maes, Gregory E., Zenger, Kyall R., and Jerry, Dean R. (2018) De novo assembly, characterization, functional annotation and expression patterns of the black tiger shrimp (Penaeus monodon) transcriptome. Scientific Reports, 8. 13553.

Hair, Cathy A., Ram, Ravinesh, and Southgate, Paul C. (2018) Is there a difference between bêche-de-mer processed from ocean-cultured and wild-harvested sandfish (Holothuria scabra)? Aquaculture, 483. pp. 63-68.

Hillen, J.E.J., Coscia, I., Vandeputte, M., Herten, K., Hellemans, B., Maroso, F., Vergnet, A., Allal, F., Maes, Gregory, and Volckaert, F.A.M. (2017) Estimates of genetic variability and inbreeding in experimentally selected populations of European sea bass. Aquaculture, 479. pp. 742-749.

Hilder, Pollyanna E., Cobcroft, Jennifer M., and Battaglene, Stephen C. (2017) Factors affecting the feeding response of larval southern bluefin tuna, Thunnus maccoyii (Castelnau, 1872). Aquaculture Research, 48 (6). pp. 2752-2766.

Herrera, Marcela, Clarke, Tayler M., Naranjo-Elizondo, Beatriz, Espinoza, Mario, and Wehrtmann, Ingo S. (2016) Size at maturity of the Pacific bearded brotula (Ophidiidae: Brotula clarkae): a commercially exploited species in the Pacific of Costa Rica. Latin American Journal Of Aquatic Research, 44 (3). pp. 657-661.

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Infante Villamil, Sandra, Huerlimann, Roger, and Jerry, Dean R. (2021) Microbiome diversity and dysbiosis in aquaculture. Reviews in Aquaculture, 13 (2). pp. 1077-1096.

Infante-Villamil, Sandra, Huerlimann, Roger, Condon, Kelly, Maes, Gregory E., and Jerry, Dean R. (2019) Bacterial signatures of productivity decay in Penaeus monodon ponds infected with PirA toxin. Aquaculture, 511. 734202.

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Jerry, Dean R., Jones, David B., Lillehammer, Marie, Massault, Cecile, Loughnan, Shannon, Cate, Holly S., Harrison, Paul J., Strugnell, Jan M., Zenger, Kyall R., and Robinson, Nicholas A. (2022) Predicted strong genetic gains from the application of genomic selection to improve growth related traits in barramundi (Lates calcarifer). Aquaculture, 549. 737761.

Jaroenram, Wansadaj, Owens, Leigh, Hayakijkosol, Orachun, and Elliman, Jennifer (2021) Natural, in ovo, vertical transmission of the RNA viruses, Chequa iflavirus and Athtab bunyavirus, but not Cherax reovirus in redclaw crayfish (Cherax quadricarinatus). Aquaculture, 534. 736285.

Jones, Clive M., and Valverde, Colin (2020) Development of mass production hatchery technology for the redclaw crayfish, Cherax quadricarinatus. Freshwater Crayfish, 25 (1). pp. 1-6.

Jones, Clive (2020) Research for development of lobster growout technology in Indonesia [Final report on ACIAR project FIS/2014/059]. Report. Australian Centre for International Agricultural Research, Canberra, ACT, Australia.

Joyce, Melissa (2020) Understanding the nutritional requirements of redclaw (Cherax quadricarinatus): determining the apparent digestibility of raw materials and quantifying dietary lysine requirement. Masters (Research) thesis, James Cook University.

Jones, David B., Nguyen, Huu, Khatkar, Mehar, Simma, David, Jerry, Dean, Raadsma, Herman, Van Der Steen, Hein, Prochaska, Jeffrey, and Zenger, Kyall (2020) The identification of a major sex QTL in the white-leg shrimp, Litopenaeus vannamei. Aquaculture, 529. 735673.

Jiang, Jufeng, Nuez Ortin, Waldo, Angell, Alex, Zeng, Chaoshu, de Nys, Rocky, and Vucko, Matthew (2019) Enhancing the colouration of the marine ornamental fish Pseudochromis fridmani using natural and synthetic sources of astaxanthin. Algal Research, 42. 101596.

Jones, Clive, Anh, Tuan Le, and Priyambodo, Bayu (2019) Lobster aquaculture development in Vietnam and Indonesia. In: Radhakrishnan, E. V., Phillips, Bruce F., and Achamveetil, Gopalakrishnan, (eds.) Lobsters: Biology, Fisheries and Aquaculture. Springer, Singapore, pp. 541-570.

Jones, Clive (2018) Progress and obstacles in establishing rock lobster aquaculture in Indonesia. Bulletin of Marine Science, 94 (3). pp. 1223-1233.

Jones, D.B., Toole, P.B., Khatkar, M.S., Raadsma, H.W., Jerry, D.R., and Zenger, K.R. (2017) Developing a genomic selection breeding program for complex pearl colour traits within the silver-lipped pearl oyster. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. pp. 537-540. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Jones, D.B., Zenger, K.R., Khatkar, M.S., Raadsma, H.W., van der Steen, H.A.M., Prochaska, J., Fôret, S., and Jerry, D.R. (2017) Development of a low density commercial genotyping array for the white legged shrimp, Litopenaeus vannamei. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. pp. 117-120. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Joffre, O.M., Castine, S.A., Phillips, M.J., Sellamuttu, S.Senaratna, Chandrabalan, D., and Cohen, P. (2017) Increasing productivity and improving livelihoods in aquatic agricultural systems: a review of interventions. Food Security, 9 (1). pp. 39-60.

Jones, David B., Jerry, Dean R., Khatkar, Mehar, Raadsma, Herman W., van der Steen, Hein, Prochaska, Jeffrey, Fôret, Sylvain, and Zenger, Kyall R. (2017) A comparative integrated gene-based linkage and locus ordering by linkage disequilibrium map for the Pacific white shrimp, Litopenaeus vannamei. Scientific Reports, 7. 10360.

Jones, B., Smullen, R., and Carton, A.G. (2016) Flavour enhancement of freshwater farmed barramundi (Lates calcarifer), through dietary enrichment with cultivated sea lettuce, Ulva ohnoi. Aquaculture, 454. pp. 192-198.

Johansson, Charlotte L., Paul, Nicholas A., de Nys, Rocky, and Roberts, David A. (2016) Simultaneous biosorption of selenium, arsenic and molybdenum with modified algal-based biochars. Journal of Environmental Management, 165. pp. 117-123.

Joyce, Melissa K., and Pirozzi, Igor (2016) Using stable isotope analysis to determine the contribution of naturally occurring pond biota and supplementary feed to the diet of farmed Australian freshwater crayfish, redclaw (Cherax quadricarinatus). International Aquatic Research , 8 (3). pp. 1-13.

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Khalilisamani, Nima, Thomson, Peter, Raadsma, Herman Willem, and Khatkar, Mehar Singh (2022) Estimating heritability using family-pooled phenotypic and genotypic data: a simulation study applied to aquaculture. Heredity, 128 (3). pp. 178-186.

Kinley, Robert D., Martinez-Fernandez, Gonzalo, Matthews, Melissa K., de Nys, Rocky, Magnusson, Marie, and Tomkins, Nigel W. (2020) Mitigating the carbon footprint and improving productivity of ruminant livestock agriculture using a red seaweed. Journal of Cleaner Production, 259.

Konovalov, Dmitry A., Saleh, Alzayat, Domingos, Jose A., White, Ron D., and Jerry, Dean R. (2018) Estimating mass of harvested Asian seabass Lates calcarifer from images. World Journal of Engineering and Technology, 6 (3). pp. 15-23.

Khatkar, M.S., Zenger, K.R., Jones, D.B., Prochaska, Jeff, van der Steen, H.A.M., Jerry, D.R., and Raadsma, H.W. (2017) Quantitative genomic analyses in the pacific whiteleg shrimp litopenaeus vannamei. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics (22) pp. 121-124. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Khatkar, M.S., Jones, D.B., Toole, P.B., Raadsma, H.W., Jerry, D.R., and Zenger, K.R. (2017) Reconstruction of unknown donor genome from chimeric pearl sac tissue and host genotypes in pinctada maxima. In: Proceedings of the Association for the Advancement of Animal Breeding and Genetics. pp. 445-448. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Kishore, Pranesh, and Southgate, Paul C. (2016) A detailed description of pearl-sac development in the black-lip pearl oyster, Pinctada margaritifera (Linnaeus 1758). Aquaculture Research, 47 (7). pp. 2215-2226.

Karthikeyan, Obulisamy Parthiba, Chidambarampadmavathy, Karthigeyan, Nadarjan, Saravanan, and Heimann, Kirsten (2016) Influence of nutrients on oxidation of low level methane by mixed methanotrophic consortia. Environmental Science and Pollution Research, 23 (5). pp. 4346-4357.

Kishore, Pranesh, and Southgate, Paul C. (2016) The effect of different culture methods on the quality of round pearls produced by the black-lip pearl oyster Pinctada margaritifera (Linnaeus, 1758). Aquaculture, 451. pp. 65-71.

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Leahy, Susannah M., Jerry, Dean R., Wedding, Brett B.C., Robins, Julie, Wright, Carole L., Sadekov, Aleksey, David, Stephen B., Jones, David B., Williams, Samuel M., Grauf, Steve, Pavich, Luke, McLennan, Mark, Sellini, Michelle J., Goldsbury, Julie A., and Saunders, Richard J. (2023) Multimethod approach to advance provenance determination of fish in stocked systems. Canadian Journal of Fisheries and Aquatic Sciences, 80. pp. 1410-1424.

Li, Jiasui, Weinberger, Florian, de Nys, Rocky, Thomas, Torsten, and Egan, Suhelen (2023) A pathway to improve seaweed aquaculture through microbiota manipulation. Trends in Biotechnology, 41 (4). pp. 545-556.

Liyanage, D.S., Lee, Sukkyoung, Yang, Hyerim, Lim, Chaehyeon, Omeka, W.K.M., Sandamalika, W.M. Gayashani, Udayantha, H.M.V., Kim, Gaeun, Ganeshalingam, Subothini, Jeong, Taehyug, Oh, Seong-Rip, Won, Seung-Hwan, Koh, Hyoung-Bum, Kim, Mun-Kwan, Jones, David B., Massault, Cecile, Jerry, Dean R., and Lee, Jehee (2022) Genome-wide association study of VHSV-resistance trait in Paralichthys olivaceus. Fish and Shellfish Immunology, 124. pp. 391-400.

Liu, Fang, Shi, Wenyuan, Ye, Haihui, Zeng, Chaoshu, and Zhu, Zhihuang (2021) Insulin-like androgenic gland hormone 1 (IAG1) regulates sexual differentiation in a hermaphrodite shrimp through feedback to neuroendocrine factors. General and Comparative Endocrinology, 303. 113706.

Liu, Angela, Pirozzi, Igor, Codabaccus, Basseer, Hines, Barney, Simon, Cedric, Sammut, Jesmond, and Booth, Mark (2019) Digestible choline requirement of juvenile yellowtail kingfish (Seriola lalandi). Aquaculture, 509. pp. 209-220.

Liu, Meimei, Wang, Lin, Cheng, Yongxu, Gong, Jie, Zeng, Chaoshu, and Wu, Xugan (2019) Effect of estradiol on hepatopancreatic lipid metabolism in the swimming crab, Portunus trituberculatus. General and Comparative Endocrinology, 280. pp. 115-122.

Long, Xiaowen, Wu, Renfu, Wu, Xugan, Hou, Wenjie, Pan, Guiping, Zeng, Chaoshu, and Cheng, Yongxu (2019) Effects of dietary fish oil replacement with blended vegetable oils on growth, lipid metabolism and antioxidant capacity of subadult swimming crab Portunus trituberculatus. Aquaculture Nutrition, 25 (6). pp. 1218-1230.

Loughnan, Shannon R., Smith-Keune, Carolyn, Beheregaray, Luciano B., Robinson, Nicholas A., and Jerry, Dean R. (2019) Population genetic structure of barramundi (Lates calcarifer) across the natural distribution range in Australia informs fishery management and aquaculture practices. Marine and Freshwater Research, 70. pp. 1533-1542.

Long, Xiaowen, Wu, Xugan, Zhu, Shaicheng, Ye, Haihui, Cheng, Yongxu, and Zeng, Chaoshu (2019) Salinity can change the lipid composition of adult Chinese mitten crab after long-term salinity adaptation. PLoS ONE, 14 (7). e0219260.

Liu, Meimei, Feng, Qiangmei, Francis, David S., Turchini, Giovanni M., Zeng, Chaoshu, and Wu, Xugan (2019) Tamoxifen affects the histology and hepatopancreatic lipid metabolism of swimming crab Portunus trituberculatus. Aquatic Toxicology, 213. 105220.

Liu, An, Liu, Jing, Chen, Xuelei, Lu, Bei, Zeng, Chaoshu, and Ye, Haihui (2019) A novel crustacean hyperglycemic hormone (CHH) from the mud crab Scylla paramamosain regulating carbohydrate metabolism. Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 231. pp. 49-55.

Long, Xiaowen, Wu, Xugan, Zhao, Lei, Ye, Haihui, Cheng, Yongxu, and Zeng, Chaoshu (2018) Physiological responses and ovarian development of female Chinese mitten crab Eriocheir sinensis subjected to different salinity conditions. Frontiers in Physiology, 8. 1072.

Li, Xixi, Norman, Hayley C., Kinley, Robert D., Laurence, Michael, Wilmot, Matt, Bender, Hannah, de Nys, Rocky, and Tomkins, Nigel (2018) Asparagopsis taxiformis decreases enteric methane production from sheep. Animal Production Science, 58 (4). pp. 681-688.

Li, Ming, Wang, Runqiu, Gomes, Giana Bastos, Zou, Hong, Li, Wen-xiang, Wu, Shan-gong, Wang, Gui-tang, and Ponce-Gordo, Francisco (2018) Epidemiology and identification of two species of Chilodonella affecting farmed fishes in China. Veterinary Parasitology, 264. pp. 8-17.

Long, Xiaowen, Wu, Xugan, Zhao, Lei, Ye, Haihui, Cheng, Yongxu, and Zeng, Chaoshu (2017) Effects of salinity on gonadal development, osmoregulation and metabolism of adult male Chinese mitten crab, Eriocheir sinensis. PLoS ONE, 12 (6). e0179036. pp. 1-19.

Lawton, Rebecca J., Paul, Nicholas A., Marshall, Dustin J., and Monro, Keyne (2017) Limited evolutionary responses to harvesting regime in the intensive production of algae. Journal of Applied Phycology, 29 (3). pp. 1449-1459.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., Bosserelle, Cyprien, and Zenger, Kyall R. (2017) Swept away: ocean currents and seascape features influence genetic structure across the 18,000 Km Indo-Pacific distribution of a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera. BMC Genomics, 18. 66. pp. 1-21.

Lawton, Rebecca J., Cole, Andrew J., Roberts, David A., Paul, Nicholas A., and de Nys, Rocky (2017) The industrial ecology of freshwater macroalgae for biomass applications. Algal Research, 24 (B). pp. 486-491.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., and Zenger, Kyall R. (2016) Fishing for divergence in a sea of connectivity: the utility of ddRADseq genotyping in a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera. Marine Genomics, 25. pp. 57-68.

Loughnan, Shannon R., Smith-Keune, Carolyn, Jerry, Dean R., Beheregaray, Luciano B., and Robinson, Nicholas A. (2016) Genetic diversity and relatedness estimates for captive barramundi (Lates calcarifer, Bloch) broodstock informs efforts to form a base population for selective breeding. Aquaculture Research, 47 (11). pp. 3570-3584.

Li, Yan, Mangott, Arnold, Kent, Megan, and Pirozzi, Igor (2016) Nutrient efficacy of microalgae as aquafeed additives for the adult black tiger prawn, Penaeus monodon. Aquaculture Research, 47 (11). pp. 3625-3635.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., Bosserelle, Cyprien, and Zenger, Kyall R. (2016) A parallel population genomic and hydrodynamic approach to fishery management of highly-dispersive marine invertebrates: the case of the Fijian Black-Lip Pearl Oyster Pinctada margaritifera. PLoS One, 11 (8). e0161390. pp. 1-26.

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Marc, Adrien F., Guppy, Jarrod L., Goldsbury, Julie, Rudd, Donna, Cate, Holly S., Paris, Damien B.B.P., and Jerry, Dean R. (2024) Characterization of sperm quality in captive-bred barramundi (Lates calcarifer): Effect on spawning performance and paternal contribution in mass-spawning events. Aquaculture, 585. 740717.

Moran, Megan N., Jones, D.B., Jensen, S.A., Marcoli, R., and Jerry, D. R. (2023) Optimising commercial traits through gene editing in aquaculture: Strategies for accelerating genetic improvement. Reviews in Aquaculture. (In Press)

Marc, Adrien, Guppy, Jarrod L., Marshall, Hayley, Jerry, Dean R., Rudd, Donna, and Paris, Damien B.B.P. (2023) Optimization of a non-activating medium for short-term chilled storage of barramundi (Lates calcarifer) testicular spermatozoa. Fish Physiology and Biochemistry, 49. pp. 559-576.

Marcoli, R., Jones, D.B., Massault, C., Marc, A.F., Moran, M., Harrison, P.J., Cate, H.S., Lopata, A.L., and Jerry, D.R. (2023) The skin structure in multiple color variants of barramundi (Lates calcarifer): A histological, immunohistochemical and ultrastructural overview. Aquaculture, 576. 739859.

Massault, Cecile, Jeffrey, Cara, Jones, David B., Barnard, Roger, Strugnell, Jan M., Zenger, Kyall R., and Jerry, Dean R. (2022) Non-invasive DNA collection for parentage analysis for bivalves: A case study from the silver-lipped pearl oyster (Pinctada maxima). Aquaculture, 552. 738036.

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