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Andrisoa, Aladin, Stieglitz, Thomas C., Rodellas, Valenti, and Raimbault, Patrick (2019) Primary production in coastal lagoons supported by groundwater discharge and porewater fluxes inferred from nitrogen and carbon isotope signatures. Marine Chemistry, 210. pp. 48-60.

Adams, Matthew P., Collier, Catherine J., Uthicke, Sven, Ow, Yan X., Langlois, Lucas, and O'brien, Katherine R. (2017) Model fit versus biological relevance: evaluating photosynthesis-temperature models for three tropical seagrass species. Scientific Reports, 7. 39930. pp. 1-12.

Albert, Simon, Saunders, Megan I., Roelfsema, Chris M., Leon, Javier X., Johnstone, Elizabeth, Mackenzie, Jock R., Hoegh-Guldberg, Ove, Grinham, Alistair R., Phinn, Stuart R., Duke, Norman C, Mumby, Peter J., Kovacs, Eva, and Woodroffe, Colin D. (2017) Winners and losers as mangrove, coral and seagrass ecosystems respond to sea-level rise in Solomon Islands. Environmental Research Letters, 12 (9). 094009. pp. 1-11.

Aschenbroich, Adélaïde, Michaud, Emma, Stieglitz, Thomas, Fromard, Francois, Gardel, Antoine, Tavares, Marcos, and Thouzeau, Gérard (2016) Brachyuran crab community structure and associated sediment reworking activities in pioneer and young mangroves of French Guiana, South America. Estuarine, Coastal and Shelf Science, 182 (Part A). pp. 60-71.

Albright, Rebecca, Anthony, Kenneth R.N., Baird, Mark, Beeden, Roger, Byrne, Maria, Collier, Catherine, Dove, Sophie, Fabricius, Katharina, Hoegh-Guldberg, Ove, Kelly, Ryan P., Lough, Janice, Mongin, Mathieu, Munday, Philip L., Pears, Rachel J., Russell, Bayden D., Tilbrook, Bronte, and Abal, Eva (2016) Ocean acidification: linking science to management solutions using the Great Barrier Reef as a case study. Journal of Environmental Management, 182. pp. 641-650.

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Amies, R.L., McCormack, C.V., and Rasheed, M.A. (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report July 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

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Amies, Rachel, McCormack, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report May 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

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Amies, Rachel, McCormack, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report March 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

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Aswani, Shankar, Christie, Patrick, Muthiga, Nyawira A., Mahon, Robin, Primavera, Jurgenne H., Cramer, Lori A., Granek, Elise F., Kennedy, Chris J., Wolanski, Eric, and Hacker, Sally (2012) The way forward with ecosystem-based management in tropical contexts: reconciling with existing management systems. Marine Policy, 36 (1). pp. 1-10.

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Bahadori, Mohammad, Wang, Jun-Tao, Shen, Ju-pei, Lewis, Stephen, Rezaei Rashti, Mehran, and Chen, Chengrong (2022) Soil organic matter and geochemical characteristics shape microbial community composition and structure across different land uses in an Australian wet tropical catchment. Land Degradation and Development, 33 (6). pp. 817-831.

Bergstrom, Dana M., Wienecke, Barbara C., van der Hoff, John, Hughes, Lesley, Lindenmayer, David, Ainsworth, Tracy, Baker, Christopher M., Bland, Lucie, Bowman, David, Brooks, Shaun T., Canadell, Josep G., Constable, Andrew J., Dafforn, Katherine A., Depledge, Michael H., Dickson, Catherine R., Duke, Norman, Helmstedt, Kate J., Holz, Andres, Johnson, Craig, Mcgeoch, Melodie, Melbourne-thomas, Jessica, Morgain, Rachel, Nicholson, Emily, Prober, Suzanne, Raymond, Ben, Ritchie, Euan, Robinson, Sharon, Ruthrof, Katinka X., Setterfield, Samantha A., Sgro, Carla M., Stark, Jonathan S., Travers, Toby, Trebilco, Rowan, Ward, Delphi F.L., Wardle, Glenda, Williams, Kristen, Zylstra, Phillip J., and Shaw, Justine D. (2021) Ecosystem collapse from the tropics to the Antarctic: an assessment and response framework. Global Change Biology, 27. pp. 1692-1703.

Bergstrom, Dana, Wienecke, Barbara C., van den Hoff, John, Hughes, Lesley, Lindenmayer, David B., Ainsworth, Tracy D., Baker, Christopher M., Bland, Lucie, Bowman, David M.J.S., Brooks, Shaun T., Canadell, Josep G., Constable, Andrew J., Dafforn, Katherine, Depledge, Michael H., Dickson, Catherine, Duke, Norman C., Helmstedt, Kate J., Holz, Andres, Johnson, Craig R., McGeoch, Melodie A., Melbourne-thomas, Jessica, Morgain, Rachel, Nicholson, Emily, Prober, Suzanne M., Raymond, Ben, Ritchie, Euan G., Robinson, Sharon A., Ruthrof, Katinka X., Setterfield, Samantha A., Sgro, Carla M., Stark, Jonathan S., Travers, Toby, Trebilco, Rowan, Ward, Delphi F.L., Wardle, Glenda M., Williams, Kristen J., Zylstra, Phillip J., and Shaw, Justine D. (2021) Combating ecosystem collapse from the tropics to the Antarctic. Global Change Biology, 27. pp. 1692-1703.

Boyero, Luz, López-Rojo, Naiara, Pérez, Javier, Tonin, Alan M., Correa-Araneda, Francisco, Davis, Aaron, and Pearson, Richard G. (2021) Effects of gamma irradiation on instream leaf litter decomposition. Hydrobiologia, 848 (21). pp. 5223-5232.

Barrios-Garrido, Hector, De Turris-Morales, Kareen, and Espinoza-Rodriguez, Ninive Edilia (2021) Guiana Dolphin (Sotalia guianensis) in the Maracaibo Lake System, Venezuela: conservation, threats, and population overview. Frontiers in Marine Science, 7. 594021.

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Bainbridge, Zoe, Lewis, Stephen, Stevens, Thomas, Petus, Caroline, Lazarus, Emily, Gorman, Jessica, and Smithers, Scott (2021) Measuring sediment grain size across the catchment to reef continuum: improved methods and environmental insights. Marine Pollution Bulletin, 168. 112339.

Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Boyd, Sue, Rashti, Mehran, Esfandbod, Maryam, Van Zwieten, Lukas, and Kuzyakov, Yakov (2021) Soil organic matter formation is controlled by the chemistry and bioavailability of organic carbon inputs across different land uses. Science of the Total Environment, 770. 145307.

Butler, Barry, Pearson, Richard G., and Birtles, R. Alastair (2021) Water-quality and ecosystem impacts of recreation in streams: Monitoring and management. Environmental Challenges, 5. 100328.

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Benson, Lee, and Pearson, Richard G. (2020) Dynamics of organic material and invertebrates in a tropical headwater stream. Hydrobiologia, 847 (1). pp. 121-136.

Baker, Ronald, Taylor, Matthew D., Able, Kenneth W., Beck, Michael W., Cebrian, Just, Colombano, Denise D., Connolly, Rod M., Currin, Carolyn, Deegan, Linda A., Feller, Ilka C., Gilby, Ben L., Kimball, Matthew E., Minello, Thomas J., Rozas, Lawrence P., Simenstad, Charles, Turner, R. Eugene, Waltham, Nathan J., Weinstein, Michael P., Ziegler, Shelby L., zu Ermgassen, Philine S.E., Alcott, Caitlin, Alford, Scott B., Barbeau, Myriam A., Crosby, Sarah C., Dodds, Kate, Frank, Alyssa, Goeke, Janelle, Goodridge Gaines, Lucy A., Hardcastle, Felicity E., Henderson, Christopher J., James, W. Ryan, Kenworthy, Matthew D., Lesser, Justin, Mallick, Debbrota, Martin, Charles W., McDonald, Ashley E., McLuckie, Catherine, Morrison, Blair H., Nelson, James A., Norris, Gregory S., Ollerhead, Jeff, Pahl, James W., Ramsden, Sarah, Rehage, Jennifer S., Reinhardt, James F., Rezek, Ryan J., Risse, L. Mark, Smith, Joseph A.M., Sparks, Eric L., and Staver, Lorie W. (2020) Fisheries rely on threatened salt marshes. Science, 370 (6517). pp. 670-671.

Baptista, Vânia, Leitão, Francisco, Morais, Pedro, Teodósio, Maria Alexandra, and Wolanski, Eric (2020) Modelling the ingress of a temperate fish larva into a nursery coastal lagoon. Estuarine, Coastal and Shelf Science, 235. 106601.

Bayraktarov, Elisa, Brisbane, Shantala, Hagger, Valerie, Smith, Carter S., Wilson, Kerrie A., Lovelock, Catherine E., Gillies, Chris, Steven, Andrew D.L., and Saunders, Megan I. (2020) Priorities and motivations of marine coastal restoration research. Frontiers in Marine Science, 7. 484.

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Barrios-Garrido, H., Becker, P., Bjorndal, K.A., Bolten, A.B., Diez, C.E., Espinoza-rodriguez, N., Fastigi, M., Gray, J., Harrison, E., Hart, K.A., Meylan, A., Meylan, P., Montiel-villalobos, M.G., Morales, F., Nava, M., Palmar, J., Petit-Rodriguez, M.J., Richardson, P., Rodriguez-Clark, K.M., Rojas-Canizales, D., Sandoval, M.G., Valverde, R.A., van Dam, R., Walker, J.T., Wildermann, N., and Hamann, M. (2020) Sources and movements of marine turtles in the Gulf of Venezuela: regional and local assessments. Regional Studies in Marine Science, 36. 101318.

Baker, Ronald, and Waltham, Nathan (2020) Tethering mobile aquatic organisms to measure predation: a renewed call for caution. Journal of Experimental Marine Biology and Ecology, 523. 151270.

Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Rashti, Mehran Rezaei, Cook, Freeman, Parnell, Andrew, Esfandbod, Maryam, and Stevens, Thomas (2020) Tracing the sources of sediment and associated particulate nitrogen from different land uses in the Johnstone River catchment, Wet Tropics, northeastern Australia. Marine Pollution Bulletin, 157. 111344.

Barrios-Garrido, Héctor A., Montiel-Villalobos, María G., Palmar, Jordano, and Rodríguez-Clark, Kathryn M. (2020) Wayuú capture of green turtles, Chelonia mydas, in the Gulf of Venezuela: a major Caribbean artisanal turtle fishery. Ocean and Coastal Management, 188. 105123.

Bauer-Civiello, Anne, Critchell, Kay, Hoogenboom, Mia, and Hamann, Mark (2019) Input of plastic debris in an urban tropical river system. Marine Pollution Bulletin, 144. pp. 235-242.

Bayraktarov, Elisa, Stewart-Sinclair, Phoebe J., Brisbane, Shantala, Boström‐Einarsson, Lisa, Saunders, Megan I., Lovelock, Catherine E., Possingham, Hugh P., Mumby, Peter J., and Wilson, Kerrie A. (2019) Motivations, success, and cost of coral reef restoration. Restoration Ecology, 27 (5). pp. 981-991.

Brodie, Jon, and Landos, Matt (2019) Pesticides in Queensland and Great Barrier Reef waterways - potential impacts on aquatic ecosystems and the failure of national management. Estuarine, Coastal and Shelf Science, 230. 106447.

Baptista, Vânia, Morais, Pedro, Cruz, Joana, Castanho, Sara, Ribeiro, Laura, Pousão-Ferreira, Pedro, Leitão, Francisco, Wolanski, Eric, and Teodósio, Maria Alexandra (2019) Swimming abilities of temperate pelagic fish larvae prove that they may control their dispersion in coastal areas. Diversity, 11 (10). 185.

Burrows, Damien, Purandare, Jemma, Bay, Line, Cook, Nathan, Koopman, Danielle, Long, Suzanne, Lundgren, Petra, Mead, David, Morris, Sheriden, Newlands, Maxine, Roth, Christian, Wachenfeld, David, Smith, Adam K., and McLeod, Ian M. (2019) Symposium report: Great Barrier Reef restoration symposium, 2018. Ecological Management and Restoration, 20 (2). pp. 175-178.

Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Rashti, Mehran Rezaei, Cook, Freeman, Parnell, Andrew, Esfandbod, Maryam, and Boyd, Sue (2019) A novel approach of combining isotopic and geochemical signatures to differentiate the sources of sediments and particulate nutrients from different land uses. Science of the Total Environment, 655. pp. 129-140.

Barrios-Garrido, Hector (2018) Las tortugas marinas y los pueblos Wayuú: una historia de ritos, creencias y usos tradicionales. Ecotropicos, 30. e0002.

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Bostrom Einarsson, Lisa (2018) Dead enough? The thorny issue of culling crown-of-thorns starfish using vinegar injections. A reply to Dumas et al. The chaotic history of using vinegar injections to control Acanthaster spp. populations, Ocean & Coastal management, 2018, Volume 165, Page number 434–435. Ocean & Coastal Management, 165. pp. 436-437.

Bostrom Einarsson, Lisa, Bonin, Mary C., Moon, Steve, and Firth, Scott (2018) Environmental impact monitoring of household vinegar-injections to cull crown-of-thorns starfish, Acanthaster spp. Ocean & Coastal Management, 155. pp. 83-89.

Bainbridge, Z., Lewis, S., Bartley, R., Fabricius, K., Collier, C., Waterhouse, J., Garzon-Garcia, A., Robson, B., Burton, J., Wenger, A., and Brodie, J. (2018) Fine sediment and particulate organic matter: a review and case study on ridge-to-reef transport, transformations, fates, and impacts on marine ecosystems. Marine Pollution Bulletin, 135. pp. 1205-1220.

Bryant, Catherine, Carter, Alex, Chartrand, Katie, Wells, Jaclyn, and Rasheed, Michael (2018) Gladstone Healthy Harbour Partnership 2018 Report Card, ISP011: seagrass. Report. James Cook University, Cairns, QLD, Australia.

Burndred, Kate R., Cockayne, Bernie J., Donaldson, James A., and Ebner, Brendan C. (2018) Natural flow events influence the behaviour and movement patterns of eel-tailed catfish (Tandanus tandanus) in a subtropical Queensland river. Australian Journal of Zoology, 66 (3). pp. 185-194.

Baker, Ronald, Bradley, Michael, Freddi, Stefano, Abrantes, Katya, Barnett, Adam, and Sheaves, Marcus (2018) Non-lethal aging of tropical catch-and-release sport fishery species. Fisheries Research, 207. pp. 110-117.

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Buelow, Christina A., Reside, April E., Baker, Ronald, and Sheaves, Marcus (2018) Stable isotopes reveal opportunistic foraging in a spatiotemporally heterogeneous environment: bird assemblages in mangrove forests. PLoS ONE, 13 (11). e0206145.

Bejannin, Simon, van Beek, Pieter, Stieglitz, Thomas, Souhaut, Marc, and Tamborski, Joseph (2017) Combining airborne thermal infrared images and radium isotopes to study submarine groundwater discharge along the French Mediterranean coastline. Journal of Hydrology, 13. pp. 72-90.

Brodersen, Kasper E., Hammer, Katherine J., Schrameyer, Verena, Floytrup, Anja, Rasheed, Michael, Ralph, Peter J., Kühl, Michael, and Pedersen, Ole (2017) Sediment resuspension and deposition on seagrass leaves impedes internal plant aeration and promotes phytotoxic H2S intrusion. Frontiers in Plant Science, 8. 657. pp. 1-13.

Bartley, Rebecca, Waters, David, Turner, Ryan, Kroon, Frederieke, Garzon-Garcia, Alex, Kuhnert, Petra, Lewis, Stephen, Smith, Rachel, Bainbridge, Zoe, Olley, Jon, Brooks, Andrew, Burton, Jo, Brodie, Jon, and Waterhouse, Jane (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition, Chapter 2: sources of sediment, nutrients, pesticides and other pollutants to the Great Barrier Reef. Report Section. State of Queensland.

Beatty, Stephen J., Allen, Mark G., Whitty, Jeff M., Lymbery, Alan J., Keleher, James J., Tweedley, James R., Ebner, Brendan C., and Morgan, David L. (2017) First evidence of spawning migration by goldfish (Carassius auratus); implications for control of a globally invasive species. Ecology of Freshwater Fish, 26 (3). pp. 444-455.

Beatty, Stephen J., Allen, Mark G., Whitty, Jeff M., Lymbery, Alan J., Keleher, James J., Tweedley, James R., Ebner, Brendan C., and Morgan, David L. (2017) First evidence of spawning migration by goldfish (Carassius auratus); implications for control of a globally invasive species. Ecology of Freshwater Fish, 26. pp. 444-455.

Boyero, Luz, and Pearson, Richard (2017) Global-scale coordinated networks as a tool for exploring the functioning of stream ecosystems. Limnetica, 36 (2). pp. 557-565.

Brodie, Jon, Devlin, Michelle, and Lewis, Stephen (2017) Potential enhanced survivorship of crown of thorns starfish larvae due to near-annual nutrient enrichment during secondary outbreaks on the central mid-shelf of the Great Barrier Reef, Australia. Diversity, 9 (17).

Beatty, Stephen, Allen, Mark, Lymbery, Alan, Jordaan, Martine S., Morgan, David, Impson, Dean, Marr, Sean, Ebner, Brendan, and Weyl, Olaf L.F. (2017) Rethinking refuges: implications of climate change for dam busting. Biological Conservation, 209. pp. 188-195.

Brodie, Jon E., Lewis, Stephen E., Collier, Catherine J., Wooldridge, Scott, Bainbridge, Zoe, Waterhouse, Jane, Rasheed, Michael, Honchin, Carol, Holmes, Glen, and Fabricius, Katharina (2017) Setting ecologically relevant targets for river pollutant loads to meet marine water quality requirements for the Great Barrier Reef, Australia: a preliminary methodology and analysis. Ocean & Coastal Management, 143. pp. 136-147.

Buckland, Amanda, Baker, Ronald, Loneragan, Neil, and Sheaves, Marcus (2017) Standardising fish stomach content analysis: the importance of prey condition. Fisheries Research, 196. pp. 126-140.

Berry, Kathryn L.E., Hoogenboom, Mia O., Brinkman, Diane L., Burns, Kathryn A., and Negri, Andrew P. (2016) Effects of coal contamination on early life history processes of a reef-building coral, Acropora tenuis. Marine Pollution Bulletin, 114 (1). pp. 505-514.

Boyero, Luz, Pearson, Richard G., Hui, Cang, Gessner, Mark, Pérez, Javier, Alexandrou, Markos A., Graça, Manuel A.S., Cardinale, Bradley J., Albariño, Ricardo J., Arunachalam, Muthukumarasamy, Barmuta, Leon A., Boulton, Andrew J., Bruder, Andreas, Callisto, Marcos, Chauvet, Eric, Death, Russell G., Dudgeon, David, Encalada, Andrea C., Ferreira, Verónica, Figueroa, Ricardo, Flecker, Alexander S., Goncalves, José F., Helson, Julie, Iwata, Tomoya, Jinggut, Tajang, Mathooko, Jude, Mathuriau, Catherine, M'Erimba, Charles, Moretti, Marcelo S., Pringle, Catherine M., Ramírez, Alonso, Ratnarajah, Lavenia, Rincon, José, and Yule, Catherine M. (2016) Biotic and abiotic variables influencing plant litter breakdown in streams: a global study. Proceedings of the Royal Society of London Series B: biological sciences, 283 (1829). 20152664. pp. 1-10.

Burns, Kathyrn A., and Jones, Ross (2016) Assessment of sediment hydrocarbon contamination from the 2009 Montara oil blow out in the Timor Sea. Environmental Pollution, 211. pp. 214-225.

Bryant, Catherine, Davies, Jaclyn, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring: November 2015 - February 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bonthu, Subbareddy, Ganguly, Dipnarayan, Ramachandran, Purvaja, Ramachandran, Ramesh, Pattnaik, Ajit K., and Wolanski, Eric (2016) Both riverine detritus and dissolved nutrients drive lagoon fisheries. Estuarine, Coastal and Shelf Science , 183 (Part B). pp. 360-369.

Bainbridge, Zoe, Lewis, Stephen, Smithers, Scott, Wilkinson, Scott, Douglas, Grant, Hillier, Stephen, and Brodie, Jon (2016) Clay mineral source tracing and characterisation of Burdekin River (NE Australia) and flood plume fine sediment. Journal of Soils Sediments, 16 (2). pp. 687-706.

Brodie, Jon, and Pearson, Richard G. (2016) Ecosystem health of the Great Barrier Reef: time for effective management action based on evidence. Estuarine, Coastal and Shelf Science, 183. pp. 438-451.

Barnett, Adam, Payne, Nicholas L., Semmens, Jayson M., and Fitzpatrick, Richard (2016) Ecotourism increases the field metabolic rate of whitetip reef sharks. Biological Conservation, 199. pp. 132-136.

Brodie, Jon, and Waterhouse, Jane (2016) Great Barrier Reef (Australia): a multi-ecosystem wetland with a multiple use management regime. In: Finlayson, C.M., Milton, R., Prentice, C., and Davidson, N.C., (eds.) The Wetland Book II: distribution description and conservation. Springer , pp. 1-14.

Bird, Michael I., O'Grady, Damien, and Ulm, Sean (2016) Humans, water, and the colonization of Australia. Proceedings of the National Academy of Sciences, 113 (41). pp. 11477-11482.

Bryant, Catherine, Davies, Jaclyn, Sankey, Tonia, and Rasheed, Michael (2016) Long-Term Seagrass Monitoring in Port Curtis: quarterly permanent transect monitoring progress report 2009 to 2015. Report. James Cook University, Cairns, QLD, Australia.

Bryant, C.V., Carter, A.B., Jarvis, J.C., and Rasheed, M.A. (2016) Port Curtis seagrass seed bank density and viability studies: year 2 report. Report. James Cook University, Cairns, QLD, Australia.

Barnett, Adam, Abrantes, Kátya G., Baker, Ronald, Diedrich, Amy S., Farr, Marina, Kuilboer, Alf, Mahony, Tracey, McLeod, Ian, Moscardo, Gianna, Prideaux, Murray, Stoeckl, Natalie, van Luyn, Ariella, and Sheaves, Marcus (2016) Sportfisheries, conservation and sustainable livelihoods: a multidisciplinary guide to developing best practice. Fish and Fisheries, 17 (3). pp. 696-713.

Baird, Mark E., Adams, Matthew P., Babcock, Russell C., Oubelkheir, Kadija, Mongin, Mathieu, Wild-Allen, Karen A., Skerratt, Jennifer, Robson, Barbara J., Petrou, Katherina, Ralph, Peter J., O’Brien, Katherine R., Carter, Alex B., Jarvis, Jessie C., and Rasheed, Michael A. (2016) A biophysical representation of seagrass growth for application in a complex shallow-water biogeochemical model. Ecological Modelling, 325. pp. 13-27.

Bartley, Rebecca, Croke, Jacky, Bainbridge, Zoe T., Austin, Jenet M., and Kuhnert, Petra M. (2015) Combining contemporary and long-term erosion rates to target erosion hot-spots in the Great Barrier Reef, Australia. Anthropocene, 10. pp. 1-12.

Brookes, Justin D., Aldridge, Kane T., Bice, Chris M., Deegan, Brian, Ferguson, Greg J., Paton, David C., Sheaves, Marcus, Ye, Qifeng, and Zampatti, Brenton P. (2015) Fish productivity in the lower lakes and Coorong, Australia, during severe drought. Transactions of the Royal Society of South Australia, 139 (2). pp. 189-215.

Baker, Ronald, Sheaves, Marcus, and Johnston, Ross (2015) Geographic variation in mangrove flooding and accessibility for fishes and nektonic crustaceans. Hydrobiologia, 762 (1). pp. 1-14.

Boyero, Luz, Pearson, Richard G., Swan, Christopher M., Hui, Cang, Albariño, Ricardo, Arunachalam, Muthukumarasamy, Callisto, Marcos, Chara, Julian, Chara-Serna, Ana M., Chauvet, Eric, Cornejo, Aydeé, Dudgeon, David, Encalada, Andrea C., Ferreira, Veronica, Gessner, Mark O., Gonçalves, José F., Graça, Manuel A.S., Helsen, Julie E., Mathooko, Jude M., McKie, Brendan G., and Yule, Catherine M. (2015) Latitudinal gradient of nestedness and its potential drivers in stream detritivores. Ecography, 38 (9). pp. 949-955.

Boyero, Luz, Pearson, Richard G., Gessner, Mark O., Dudgeon, David, Ramírez, Alonso, Yule, Catherine M., Callisto, Marcos, Pringle, Catherine M., Encalada, Andrea C., Arunachalam, Muthukumarasamy, Mathooko, Jude, Helson, Julie E., Rincon, José, Bruder, Andreas, Cornejo, Aydeé, Flecker, Alexander S., Mathuriau, Catherine, M'Erimba, Charles, Gonçalves, Jose F., Moretti, Marcelo, and Jinggut, Tajang (2015) Leaf-litter breakdown in tropical streams: is variability the norm? Freshwater Science, 34 (2). pp. 759-769.

Brodie, Jon, Lewis, Stephen, Davis, Aaron, Bainbridge, Zoe, O'Brien, Dominique, Waterhouse, Jane, Devlin, Michelle, and Thomas, Colette R. (2015) Management of agriculture to preserve environmental values of the Great Barrier Reef, Australia. In: Chicharo, Luís, Müller, Felix, and Fohrer, Nicola, (eds.) Ecosystems Services and River Basin Ecohydrology. Springer, Dordrecht, Netherlands, pp. 275-292.

Bayala, J., and Wallace, J.S. (2015) The water balance of mixed tree-crop systems. In: Ong, C.K., Black, Colin R., and Wilson, Julia, (eds.) Tree-crop interactions. CABI International, Wallingford, UK, pp. 146-190.

Bainbridge, Zöe T., Lewis, Stephen E., Smithers, Scott G., Kuhnert, Petra M., Henderson, Brent L., and Brodie, Jon E. (2014) Fine-suspended sediment and water budgets for a large, seasonally dry tropical catchment: Burdekin River catchment, Queensland, Australia. Water Resources Research, 50 (11). pp. 9067-9087.

Bryant, Catherine, and Reason, Carissa (2014) Gladstone Western Basin and Channel Dupliaction BPAR Monitoring May - July 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Binning, Sandra A., Barnes, Jeffrey I., Davies, Jaclyn N., Backwell, Patricia R.Y., Keogh, J. Scott, and Roche, Dominique G. (2014) Ectoparasites modify escape behaviour, but not performance, in a coral reef fish. Animal Behaviour, 93. pp. 1-7.

Brodie, Jon, Waterhouse, Jane, and Maynard, Jeffrey (2014) Prioritising catchment agricultural management practice change through marine risk assessment in the Great Barrier Reef. In: Abstracts from the Society for Conservation Biology Oceania Conference. pp. 101-102. From: Society for Conservation Biology Oceania Conference, 9-11 July 2014, Suva, Fiji.

Bryant, Catherine, Chartrand, Katie, Rasheed, Michael, Leith, Mark, Thomas, Ross, and Ralph, Peter (2014) Seasonal recruitment and senescence in tropical deepwater seagrass meadows. In: 51st Australian Marine Sciences Association annual conference: investigating our marine nation: abstracts. p. 139. From: AMSA 2014 Investigating our Marine Nation: 51st Annual Conference of the Australian Marine Sciences Association, 6-10 July 2014, Canberra, ACT, Australia.

Bryant, Catherine, and Tasker, Zoe (2014) Gladstone Western Basin Post Dredge BPAR Monitoring March - May 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, C., Davies, J.D., Jarvis, J.C., Tol, S., and Rasheed, M. (2014) Seagrasses in Port Curtis & Rodds Bay 2013: annual long term monitoring, biannual western basin surveys & updated baseline survey. Report. TropWATER, James Cook University, Cairns.

Brodie, Jon (2014) Dredging the Great Barrier Reef: use and misuse of science. Estuarine, Coastal and Shelf Science , 142. pp. 1-3.

Bryant, C.V., and Tasker, Z. (2014) Gladstone Western Basin Post Dredge BPAR Monitoring December 2013 - February 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Blanchette, Melanie L., Davis, Aaron M., Jardine, Timothy D., and Pearson, Richard G. (2014) Omnivory and opportunism characterize food webs in a large dry-tropics river system. Freshwater science, 33 (1). pp. 142-158.

Bartley, Rebecca, Bainbridge, Zoe T., Lewis, Stephen E., Kroon, Frederieke J., Wilkinson, Scott N., Brodie, Jon E., and Silburn, D. Mark (2014) Relating sediment impacts on coral reefs to watershed sources, processes and management: a review. Science of the Total Environment, 468-469. pp. 1138-1153.

Bartley, Rebecca, Bainbridge, Zoe T., Lewis, Stephen E., Kroon, Frederieke J., Wilkinson, Scott N., Brodie, Jon E., and Silburn, Mark D. (2014) From coral to cows: using ecosystem processes to inform catchment management of the Great Barrier Reef. In: Proceedings of the 7th Australian Stream Management Conference. pp. 9-16. From: 7th Australian Stream Management Conference: catchment to coast, 27-30 July 2014, Townsville, QLD, Australia.

Bryant, Catherine, Jarvis, Jessie, York, Paul, and Rasheed, Michael (2014) Gladstone Healthy Harbour Partnership Pilot Report Card. ISP011: seagrass final report. Report. TropWATER, Cairns, QLD, Australia.

Bryant, C., Davies, J., Sankey, T., Jarvis, J., and Rasheed, M. (2014) Long Term Seagrass Monitoring in Port Curtis: quarterly seagrass assessments & permanent transect monitoring progress report 2009 to 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Burns, Kathryn A. (2014) PAHs in the Great Barrier Reef Lagoon reach potentially toxic levels from coal port activities. Estuarine, Coastal and Shelf Science , 144. pp. 39-45.

Bryant, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report December 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Butler, James R.A., Wong, Grace Y., Metcalfe, Daniel J., Honzák, Miroslav, Pert, Petina L., Rao, Nalini, van Grieken, Martijn E., Lawson, Tina, Bruce, Caroline, Kroon, Frederieke J., and Brodie, Jon E. (2013) An analysis of trade-offs between multiple ecosystem services and stakeholders linked to land use and water quality management in the Great Barrier Reef, Australia. Agriculture, Ecosystems and Environment, 180. pp. 176-191.

Bryant, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report November 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Berry, Kathryn L.E., Seemann, Janina, Dellwig, Olaf, Struck, Ulrich, Wild, Christian, and Leinfelder, Reinhold R. (2013) Sources and spatial distribution of heavy metals in scleractinian coral tissues and sediments from the Bocas del Toro Archipelago, Panama. Environmental Monitoring and Assessment, 185 (11). pp. 9089-9099.

Bryant, Catherine, Amies, Rachel, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: September 2013 update report. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Brodie, Jon, Waterhouse, Jane, Maynard, Jeffrey, Bennett, John, Furnas, Miles, Devlin, Michelle, Lewis, Stephen, Collier, Catherine, Schaffelke, Britta, Fabricius, Katharina, Petus, Caroline, da Silva, Eduardo, Zeh, Daniel, Randall, Lucy, Brando, Vittorio, McKenzie, Len, O'Brien, Dominique, Smith, Rachael, Warne, Michael, Brinkman, Richard, Tonin, Hemerson, Bainbridge, Zoe, Bartley, Rebecca, Negri, Andrew, Turner, Ryan, Davis, Aaron, Bentley, Christie, Mueller, Jochen, Alvarez-Romero, Jorge, Henry, Nyssa, Waters, David, Yorkston, Hugh, and Tracey, Dieter (2013) Assessment of the relative risk of water quality to ecosystems of the Great Barrier Reef. A report to the Department of the Environment and Heritage Protection, Queensland Government, Brisbane - Report 13/28. Report. James Cook University, Townsville, QLD, Australia.

Barnett, Adam, Yick, Jonah L., Abrantes, Kátya G., and Awruch, Cynthia A. (2013) Trophic ecology of an abundant predator and its relationship with fisheries. Marine Ecology Progress Series, 494. pp. 241-248.

Broadhurst, Ben T., Lintermans, Mark, Thiem, Jason D., Ebner, Brendan C., Wright, Daniel W., and Clear, Rhian C. (2012) Spatial ecology and habitat use of two-spined blackfish Gadopsis bispinosus in an upland reservoir. Aquatic Ecology, 46 (3). pp. 297-309.

Bainbridge, Zoe T., Wolanski, Eric, Alvarez Romero, Jorge, Lewis, Stephen E., and Brodie, Jon E. (2012) Fine sediment and nutrient dynamics related to particle size and floc formation in a Burdekin River flood plume, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 236-248.

Brodie, J.E., Kroon, F.J., Schaffelke, B., Wolanski, E.C., Lewis, S.E., Devlin, M.J., Bohnet, I.C., Bainbridge, Z.T., Waterhouse, J., and Davis, A.M. (2012) Terrestrial pollutant runoff to the Great Barrier Reef: an update of issues, priorities and management responses. Marine Pollution Bulletin, 65 (4-9). pp. 81-100.

Brodie, Jon, Wolanski, Eric, Lewis, Stephen, and Bainbridge, Zoe (2012) An assessment of residence times of land-sourced contaminants in the Great Barrier Reef lagoon and the implications for management and reef recovery. Marine Pollution Bulletin, 65 (4-9). pp. 267-279.

Brodie, Jon, and Waterhouse, Jane (2012) A critical review of environmental management of the 'not so Great' Barrier Reef. Estuarine, Coastal and Shelf Science , 104-105. pp. 1-22.

Broadhurst, B.T. , Ebner, B.C., and Clear, R.C. (2012) A rock-ramp fishway expands nursery grounds of the endangered Macquarie perch (Macquaria australasica). Australian Journal of Zoology, 60 (2). pp. 91-100.

Brodie, J.E., Devlin, M., Haynes, D., and Waterhouse, J. (2011) Assessment of the eutrophication status of the Great Barrier Reef lagoon (Australia). Biogeochemistry, 106 (2). pp. 281-302.

Bricker, Suzanne, and Devlin, Michelle (2011) Preface: "Eutrophication" issue of Biogeochemistry. Biogeochemistry, 106 (2). pp. 135-136.

Bohensky, Erin, Butler, James R.A., Costanza, Robert, Bohnet, Iris, Delisle, Aurélie, Fabricius, Katharina, Gooch, Margaret, Kubiszewski, Ida, Lukacs, George, Pert, Petina, and Wolanski, Eric (2011) Future makers or future takers? A scenario analysis of climate change and the Great Barrier Reef. Global Environmental Change, 21 (3). pp. 876-893.

Bainbridge, Zoe, Dight, Ian, Yorkston, Hugh, Lewis, Stephen, and Brodie, Jon (2011) Catchment management in a dry tropical river near the Great Barrier Reef. In: Wilkinson, Clive, and Brodie, Jon, (eds.) Catchment Management and Coral Reef Convservation. Global Coral Reef Monitoring Network and Reef and Rainforest Research Centre, Townsville, QLD, Australia, pp. 96-97.

Ben-Hamadou, R., Atanasova, N., and Wolanski, E. (2011) Ecohydrology modeling: tools for management. In: Wolanski, Eric, McLusky, Donald, Chícharo, L., and Zalewski, M., (eds.) Ecohydrology and Restoration. Treatise on Estuarine and Coastal Science, 10 . Academic Press, London, UK, pp. 301-328.

Bohnet, Iris C., Roebeling, Peter C., Williams, Kristen J., Holzworth, Dean, van Grieken, Martijn E., Pert, Petina L., Kroon, Frederieke J., Westcott, David A., and Brodie, Jon (2011) Landscapes Toolkit: an integrated modelling framework to assist stakeholders in exploring options for sustainable landscape development. Landscape Ecology, 26 (8). pp. 1179-1198.

Baker, William J., Norup, Maria V., Clarkson, James J., Couvreur, Thomas L.P., Dowe, John L., Lewis, Carl E., Pintaud, Jean-Christophe, Savolainen, Vincent, Wilmot, Tomas, and Chase, Mark W. (2011) Phylogenetic relationships among arecoid palms (Arecaceae: Arecoideae). Annals of Botany, 108 (8). pp. 1417-1432.

Barfod, Anders S., Dowe, John Leslie, and Suksathan, Piyakaset (2010) Major Jenkins' fan palm in Thailand. Palms, 54 (3). pp. 109-118.

Brodie, Jon, Schroeder, Thomas, Rohde, Ken, Faithful, John, Masters, Bronwyn, Dekker, Arnold, Brando, Vittorio, and Maughan, Mirjam (2010) Dispersal of suspended sediments and nutrients in the Great Barrier Reef lagoon during river-discharge events: conclusions from satellite remote sensing and concurrent flood-plume sampling. Marine and Freshwater Research, 61 (6). pp. 651-664.

Bainbridge, Zoe T., Brodie, Jon E. , Faithful, John W., Sydes, Damon A., and Lewis, Stephen E. (2009) Identifying the land-based sources of suspended sediments, nutrients and pesticides discharged to the Great Barrier Reef from the Tully–Murray Basin, Queensland, Australia. Marine and Freshwater Research, 60 (11). pp. 1081-1090.

Bainbridge, Z.T., Brodie, J.E., Lewis, S.E., Waterhouse, J., and Wilkinson, S.N. (2009) Utilising catchment modelling as a tool for monitoring Reef Rescue outcomes in the Great Barrier Reef catchment area. In: Proceedings of 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation. pp. 3301-3307. From: 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 13–17 July 2009, Cairns, QLD, Australia.

Brodie, Jon, Pearson, Richard, Lewis, Stephen, Bainbridge, Zoe, Waterhouse, Jane, and Prange, Joelle (2009) Water quality research: baseline synthesis and year 1 summary. Report. Reef and Rainforest Research Centre on behalf of the Australian Government's Marine and Tropical Sciences Research Facility, Cairns, Australia.

Brodie, Jon, Lewis, Stephen, Bainbridge, Zoe, Mitchell, Alan, Waterhouse, Jane, and Kroon, Frederieke (2009) Target setting for pollutant discharge management of rivers in the Great Barrier Reef catchment area. Marine and Freshwater Research, 60 (11). pp. 1141-1149.

Barbier, Edward B., Koch, Evamaria W., Silliman, Brian R., Hacker, Sally D., Wolanski, Eric, Primavera, Jurgenne H., Granek, Elise F., Polasky, Stephen, Aswani, Shankar, Cramer, Lori A., Stoms, David M., Kennedy, Chris J., Bael, David, Kappel, Carrie V., Perillo, Gerardo M. E., and Reed, Denise J. (2008) Response to N. Koedam and F. Dahdouh-Guebas's E-Letter [original article: Barbier et al. (2008) Coastal ecosystem-based management with nonlinear ecological functions and values]. Science, 320. pp. 321-323.

Barbier, Edward B., Koch, Eva-Maria W., Silliman, Brian R., Hacker, Sally D., Wolanski, Eric, Primavera, Jurgenne H., Granek, Elise F., Polasky, Stephen, Aswani, Shankar, Cramer, Lori A., Stoms, David M., Kennedy, Chris J., Bael, David, Kappel, Carrie V., Perillo, Gerardo M.E., and Reed, Denise J. (2008) Vegetation's role in coastal protection: response. American Association for the Advancement of Science.

Barbier, Edward B, Koch, Evamaria W., Silliman, Brian R., Hacker, Sally D., Wolanski, Eric, Primavera, Jurgenne, Granek, Elise F., Polasky, Stephen, Aswani, Shankar, Cramer , Lori A., Stoms, David M., Kennedy, Chris J., Bael, David, Kappel, Carrie V., Perillo, Gerardo M.E., and Reed, Denise J. (2008) Coastal ecosystem–based management with nonlinear ecological functions and values. Science, 319. pp. 321-323.

Bohnet, Iris, Brodie, Jon, and Bartley, Rebecca (2008) Assessing water quality impacts of community defined land use change scenarios for the Douglas Shire, Far North Queensland. In: Pettit, Christopher, Cartwright, William, Bishop, Ian, Lowell, Kim, Pullar, David, and Duncan, David, (eds.) Landscape Analysis and Visualisation: spatial models for natural resource management and planning. Springer, Berlin, Heidleberg, pp. 383-406.

Bainbridge, Zoe, Brodie, Jon, Manning, Chris, Waterhouse, Jane, Lewis, Stephen, Gooch, Margaret, and Broderick, Kathleen (2008) Integrated Monitoring and Modelling Strategy for the Black Ross Water Quality Improvement Plan. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Brodie, J., and Fabricius, K. (2008) Terrestrial runoff to the Great Barrier Reef and the implications for its long term ecological status. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 108-113.

Brodie, Jon, Bainbridge, Zoe, and Lewis, Stephen (2008) Tully Murray Water Quality Monitory Strategy. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Brodie, Jon, and Bainbridge, Zoe (2008) Water Quality Targets for the Burdekin Water Quality Improvement Plan. ACTFR Report No. 08/05 for the Burdekin Dry Tropics NRM. Report. James Cook University, Townsville, QLD, Australia.

Brodie, J., De'ath, G., Devlin, M., Furnas, M., and Wright, M. (2007) Spatial and temporal patterns of near-surface chlorophyll a in the Great Barrier Reef lagoon. Marine and Freshwater Research, 58 (4). pp. 342-353.

Butler, Barry, Loong, Dom, and Burrows, Damien (2007) Accumulation of metals in stream sediments of the Upper Walsh River Catchment, North Queensland. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Burrows, Damien, and Butler, Barry (2007) Determining end-point goals and effective strategies for rehabilitation of Coastal Wetlands: examples from the Burdekin River, North Queensland. In: Proceedings of the 5th Australian Stream Management Conference: Australian Rivers: Making a Difference. pp. 49-54. From: 5th Australian Stream Management Conference: Australian Rivers: Making a Difference, 21-25 May 2007, Albury, NSW.

Butler, Barry, and Burrows, Damien W. (2007) Dissolved Oxygen Guidelines for Freshwater Habitats of Northern Australia. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Butler, Barry, Burrows, Damien, and Pearson, Richard (2007) Providing regional NRM with improved aquatic health risk assessment and monitoring tools: the nationally significant indication: dissolved oxygen. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Bainbridge, Z.T., Lewis, S.E., and Brodie, J.E. (2007) Sediment and nutrient exports for the Burdekin River catchment, north Queensland: a comparison of monitoring and modelling data. In: Proceedings of MODSIM07: the International Congress on Modelling and Simulation. pp. 874-880. From: MODSIM07: International Congress on Modelling and Simulation, 10-13 December 2007, Christchurch, New Zealand.

Brodie, Jon, Fabricius, Katharina, De'ath, Glenn, and Okaji, Ken (2005) Are increased nutrient inputs responsible for more outbreaks of crown-of-thorns starfish? an appraisal of the evidence. Marine Pollution Bulletin, 51 (1-4). pp. 266-278.

Brodie, Jon E., and Mitchell, Alan W. (2005) Nutrients in Australian tropical rivers: changes with agricultural development and implications for receiving environments. Marine and Freshwater Research, 56 (3). pp. 279-302.

Barfod, Anders S., and Dowe, John Leslie (2005) The enigmatic Australian fan-palm Licuala ramsayi. Palms, 49 (1). pp. 15-23.

Brodie, Jon E., and Devlin, Michelle (2004) Exposure of Great Barrier Reef reefs to land-sourced contaminants: changes due to catchment agricultural development. In: Proceedings of the 10th International Coral Reef Symposium. p. 79. From: 10th International Coral Reef Symposium, 28 June - 2 July 2004, Okinawa, Japan.

Burrows, Damien (2004) Aquatic ecosystems. In: McCullough, Marnie, and Musso, Barbara, (eds.) Healthy Rangelands: principles for sustainable systems. Focus on Australia's Burdekin rangelands. Tropical Savannas CRC, pp. 148-170.

Brinkman, R., Wolanski, E., and Spagnol, S. (2004) Field and model studies of the nepheloid layer in coastal waters of the Great Barrier Reef, Australia. In: Jirka, Gerhard H., and Uijttewaal, Wim S.J., (eds.) Shallow Flows. Taylor & Francis, London, UK, pp. 225-229.

Brodie, Jon , and Furnas, Miles (2003) Status of nutrient and sediment inputs from great Barrier Reef catchments and impacts on the Reef. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.

Brodie, Jon E., McKergow, Lucy A., Prosser, Ian P., Furnas, Miles, Hughes, Andrew O., and Hunter, Heather (2003) Sources of sediment and nutrient exports to the Great Barrier Reef World Heritage Area. Report. Australian Centre for Tropical Freshwater Research, Townsville, Australia.

Brodie, J., Mitchell, A., Furnas, M., Haynes, D., Waterhouse, J., Ghonim, S., Morris, S., Yorkston, H., and Audas, D. (2003) Developing catchment pollutant load targets for the protection of the Great Barrier Reef. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20-23 November 2001, Townsville, QLD, Australia.

Brodie, Jon (2003) The Great Barrier Reef: 25 Years of management as a large marine ecosystem. In: Hempel, Gotthilf, and Sherman, Kenneth, (eds.) Large Marine Ecosystems of the World: trends in exploitation, protection, and research. Elsevier, The Netherlands, pp. 313-336.

Burns, K.A., Codi, S., and Duke, N.C. (2000) Gladstone, Australia field studies: weathering and degradation of hydrocarbons in oiled mangrove and salt marsh sediments with and without the application of an experimental bioremediation protocol. Marine Pollution Bulletin, 41 (7-12). pp. 392-402.

Burrows, Damien (2000) Literature review of the potential impacts of grazing on aquatic and riparian ecosystems in the Australian dry tropical rangelands. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien, Faithful, John, Kutt, Alex, Tait, Jim, and Blunden, Lynda (1999) Environmental study of a proposed dam at Mount Douglas on the Belyando River. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1999) Review of buffer widths for Oonoonba School Lagoon. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W., and Kutt, Alex (1999) Review of environmental factors - Flinders Highway (Gardner Creek to Burra Range). Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1999) Review of environmental factors - Tully - Hull Road. Report. James Cook University, Townsville, QLD, Australia.

Butler, B., and Lukacs, G. (1999) Water quality planning Elliott main channel. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W., Pusey, Bradley, Werren, Garry, Walsh, Kerry, Kutt, Alex, Cumming, Russell, and Cohen, Martin (1999) An initial environmental assessment of water infrastructure options in the Burdekin Catchment. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W., Kutt, Alex S., and Kemp, Jeanette E. (1998) Burdekin catchment study – a desktop study of environmental issues associated with dam and irrigation area development. Report. James Cook University, Townsville, QLD, Australia.

Butler, Barry, and Tait, Jim (1998) DNR training course on bioaccumulation - workbook. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1998) FNQ 2010 regional environment strategy. Key waterways report. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W., and Butler, Barry (1998) Literature review and scoping study of the potential downstream impacts of the proposed Nathan Dam on the Dawson River, Fitzroy River and offshore environments. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1998) PNG gas project. Wetland and watercourse crossing study. Cable Beach to Gladstone. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1998) Reed beds pump station and pipeline environmental review. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W., Tait, Jim P., and Webb, Alan C. (1998) A brief biological survey of Idalia Lagoon, Townsville. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1997) Papua New Guinea to Queensland Gas Pipeline wetland and watercourse crossing study Cape York to Gladstone. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1997) Papua New Guinea to Queensland gas pipeline: butterfly desktop review. Report. James Cook University, Townsville, QLD, Australia.

Butler, B.M., and Taylor, J.P. (1996) Comalco Weipa water quality investigation stage 1. Report. James Cook University, Townsville, QLD, Australia.

Butler, Barry, Birtles, Alastair, Pearson, Richard, and Jones, Kim (1996) Ecotourism, water quality and wet tropics streams. Report. James Cook University, Townsville, QLD, Australia.

Burrows, D.W., Kutt, A.S., and Cumming, R.J. (1996) Pandora gas pipeline Palmer River to Townsville section. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien Wayne (2003) The role of insect leaf herbivory on the mangroves Avicennia marina and Rhizophora stylosa. PhD thesis, James Cook University.

C

Campbell, Cherie J., James, Cassandra S., Morris, Kaylene, Nicol, Jason M., Thomas, Rachael F., Nielsen, Daryl L., Gehrig, Susan L., Palmer, Gary J., Wassens, Skye, Dyer, Fiona, Southwell, Mark, Watt, Robin J., Bond, Nick R., and Capon, Samantha J. (2022) Blue, green and in-between: objectives and approaches for evaluating wetland flow regimes based on vegetation outcomes. Marine and Freshwater Research. (In Press)

Cooper, Madalyn K., Villacorta-Rath, Cecilia, Burrows, Damien, Jerry, Dean R., Carr, Leah, Barnett, Adam, Huveneers, Charlie, and Simpfendorfer, Colin A. (2022) Practical eDNA sampling methods inferred from particle size distribution and comparison of capture techniques for a Critically Endangered elasmobranch. Environmental DNA. (In Press)

Claassens, L., de Villiers, N.M., and Waltham, N.J. (2022) How developed is the South African coast? Baseline extent of South Africa’s coastal and estuarine infrastructure. Ocean and Coastal Management, 222. 106112.

Comeros-Raynal, Mia T., Brodie, Jon, Bainbridge, Zoe, Choat, John Howard, Curtis, Meagan, Lewis, Stephen, Stevens, Thomas, Shuler, Christopher K., Sudek, Mareike, and Hoey, Andrew S. (2021) Catchment to sea connection: impacts of terrestrial run-off on benthic ecosystems in American Samoa. Marine Pollution Bulletin, 169. 112530.

Colombano, Denise D., Litvin, Steven Y., Ziegler, Shelby L., Alford, Scott B., Baker, Ronald, Barbeau, Myriam A., Cebrián, Just, Connolly, Rod M., Currin, Carolyn A., Deegan, Linda A., Lesser, Justin S., Martin, Charles W., McDonald, Ashley E., McLuckie, Catherine, Morrison, Blair H., Pahl, James W., Risse, L. Mark, Smith, Joseph A.M., Staver, Lorie W., Turner, R. Eugene, and Waltham, Nathan J. (2021) Climate change implications for tidal marshes and food web linkages to estuarine and coastal nekton. Estuaries and Coasts, 44. pp. 1637-1648.

Creighton, Colin, Waterhouse, Jane, Day, Jon C., and Brodie, Jon (2021) Criteria for effective regional scale catchment to reef management: a case study of Australia's Great Barrier Reef. Marine Pollution Bulletin, 173 (Part A). 112882.

Canning, Adam D., and Waltham, Nathan J. (2021) Ecological impact assessment of climate change and habitat loss on wetland vertebrate assemblages of the Great Barrier Reef catchment and the influence of survey bias. Ecology and Evolution, 11 (10). pp. 5244-5254.

Chilton, Daniel, Hamilton, David P., Nagelkerken, Ivan, Cook, Perran, Hipsey, Matthew R., Reid, Robert, Sheaves, Marcus, Waltham, Nathan J., and Brookes, Justin (2021) Environmental flow requirements of estuaries: providing resilience to current and future climate and direct anthropogenic changes. Frontiers in Environmental Science, 9. 764218.

Canning, Adam D., Jarvis, Diane, Costanza, Robert, Hasan, Syezlin, Smart, James C.R., Finisdore, John, Lovelock, Catherine E., Greenhalgh, Suzie, Marr, Helen M., Beck, Michael W., Gillies, Christopher L., and Waltham, Nathan J. (2021) Financial incentives for large-scale wetland restoration: beyond markets to common asset trusts. One Earth, 4 (7). pp. 937-950.

Cooper, Madalyn K., Huerlimann, Roger, Edmunds, Richard C., Budd, Alyssa M., Le Port, Agnes, Kyne, Peter M., Jerry, Dean R., and Simpfendorfer, Colin A. (2021) Improved detection sensitivity using an optimal eDNA preservation and extraction workflow and its application to threatened sawfishes. Aquatic Conservation: marine and freshwater ecosystems, 31 (8). pp. 2131-2148.

Canning, Adam D., Joy, Michael K., and Death, Russell G. (2021) Nutrient criteria to achieve New Zealand’s riverine macroinvertebrate targets. PeerJ, 9. e11556.

Canning, Adam D., Death, Russell G., and Waltham, Nathan J. (2021) Pharmaceutical companies should pay for raiding nature's medicine cabinet. Lancet, 398 (10303). pp. 840-841.

Carter, A.B., Kish, H., and Chartrand, K. (2021) Reef Restoration Foundation Fitzroy Island Coral Nursery Monitoring: methods and results April - October 2020. Report. James Cook University, Cairns, QLD, Australia.

Carter, Alex, Coles, Rob, Rasheed, Michael, and Collier, Catherine J. (2021) Seagrass communities of the Great Barrier Reef and their desired state: applications for spatial planning and management. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Carter, A.B., McKenna, S.A., and Shepherd, L. (2021) Subtidal seagrass of western Torres Strait. Report. James Cook University, Cairns, QLD, Australia.

Carter, Alex B., McKenna, Skye A., Rasheed, Michael A., Collier, Catherine, McKenzie, Len, Pitcher, Roland, and Coles, Rob (2021) Synthesizing 35 years of seagrass spatial data from the Great Barrier Reef World Heritage Area, Queensland, Australia. Limnology and Oceanography Letters, 6 (4). pp. 216-226.

Carter, Alexandra, Wilkinson, Juliette, David, Madeina, and Lukac, Micaela (2021) Torres Strait Eastern Cluster: intertidal seagrass baseline survey. Report. James Cook University, Cairns, QLD, Australia.

Carter, Alexandra, David, Madeina, Whap, Terrence, Hoffman, Luke, Scott, Abigail, and Rasheed, Michael (2021) Torres Strait Seagrass 2021 Report Card. Report. James Cook University, Cairns, QLD, Australia.

Collier, C.J., Langlois, L.M., McMahon, K.M., Udy, J., Rasheed, M., Lawrence, E., Carter, A.B., Fraser, M.W., and McKenzie, L.J. (2021) What lies beneath: predicting seagrass below-ground biomass from above-ground biomass, environmental conditions and seagrass community composition. Ecological Indicators, 121. 107156.

Canto, Marites M., Fabricius, Katharina E., Logan, Murray, Lewis, Stephen, McKinna, Lachlan I.W., and Robson, Barbara J. (2021) A benthic light index of water quality in the Great Barrier Reef, Australia. Marine Pollution Bulletin, 169. 112539.

Canning, Adam D., and Death, Russell G. (2021) The influence of nutrient enrichment on riverine food web function and stability. Ecology and Evolution, 11 (4). pp. 942-954.

Carter, Alex B., Collier, Catherine, Lawrence, Emma, Rasheed, Michael A., Robson, Barbara J., and Coles, Rob (2021) A spatial analysis of seagrass habitat and community diversity in the Great Barrier Reef World Heritage Area. Scientific Reports, 11. 22344.

Connolly, Niall M., and Pearson, Richard G. (2020) Do constrained immigration rates and high beta diversity explain contrasting productivity-diversity patterns measured at different scales? Oecologia, 194 (3). pp. 481-490.

Carter, A.B., Kish, H., and Chartrand, K. (2020) Reef Restoration Foundation Hastings Reef Coral Nursery Monitoring: December 2019 - July 2020. Report. James Cook University, Cairns, QLD, Australia.

Crawford, C., Edgar, G., Gillies, C. L., and Heller-Wagner, G. (2020) Relationship of biological communities to habitat structure on the largest remnant flat oyster reef (Ostrea angasi) in Australia. Marine and Freshwater Research, 71 (8). pp. 972-983.

Ceccarelli, Daniela M., McLeod, Ian M., Boström-Einarsson, Lisa, Bryan, Scott E., Chartrand, Kathryn M., Emslie, Michael J., Gibbs, Mark T., Gonzalez Rivero, Manuel, Hein, Margaux Y., Heyward, Andrew, Kenyon, Tania M., Lewis, Brett M., Newlands, Maxine, Mattocks, Neil, Schläppy, Marie-Lise, Suggett, David J., and Bay, Line K. (2020) Substrate stabilisation and small structures in coral restoration: state of knowledge, and considerations for management and implementation. PLoS ONE, 15 (10). e0240846.

Carter, Alexandra, Mellors, Jane, Whap, Terrence, and Hoffman, Luke (2020) Torres Strait Seagrass 2020 Report Card. Report. James Cook University, Cairns, QLD, Australia.

Collier, C.J., Carter, A.B., Rasheed, M., McKenzie, L., Udy, J., Coles, R., Brodie, J., Waycott, M., O’Brien, K.R., Saunders, M., Adams, M., Martin, K., Honchin, C., Petus, C., and Lawrence, E. (2020) An evidence-based approach for setting desired state in a complex Great Barrier Reef seagrass ecosystem: a case study from Cleveland Bay. Environmental and Sustainability Indicators, 7. 100042.

Canning, Adam Douglas, and Death, Russell George (2019) Food web structure but not robustness differ between rivers, lakes and estuaries. Oecologia Australis, 23 (1). pp. 112-126.

Canning, Adam D., Death, Russell G., and Gardner, Erna M. (2019) Forest canopy affects stream macroinvertebrate assemblage structure but not trophic stability. Freshwater Science, 38 (1). pp. 40-52.

Carter, Alex, Chartrand, Katie, Wells, Jaclyn, and Rasheed, Michael (2019) Gladstone Healthy Harbour Partnership 2019 Report Card, ISP011: seagrass. Report. James Cook University, Cairns, QLD, Australia.

Ceccarelli, Daniela M., Evans, Richard D., Logan, Murray, Mantel, Philippa, Puotinen, Marji, Petus, Caroline, Russ, Garry R., and Williamson, David H. (2019) Long-term dynamics and drivers of coral and macroalgal cover on inshore reefs of the Great Barrier Reef Marine Park. Ecological Applications. e02008.

Critchell, Kay, Hamann, Mark, Wildermann, Natalie, and Grech, Alana (2019) Predicting the exposure of coastal species to plastic pollution in a complex island archipelago. Environmental Pollution, 252, Part B. pp. 982-991.

Creighton, Colin, Prahalad, Vishnu N., McLeod, Ian, Sheaves, Marcus, Taylor, Matthew D., and Walshe, Terry (2019) Prospects for seascape repair: three case studies from eastern Australia. Ecological Management and Restoration, 20 (3).

Carter, Alexandra, Coles, Robert, Grech, Alana, McKenna, Skye, Rasheed, Michael, McKenzie, Len, and Duke, Norman (2019) Spatial data as a baseline for managing coastal seagrasses in Queensland, Australia. In: [Presented at the CERF Biennial Conference]. From: The 25th Biennial CERF Conference, 3–7 November, 2019, Mobile, AL, USA.

Carter, A.B., Mellors, J.E., Reason, C., and Rasheed, M.A. (2019) Torres Strait Seagrass 2019 Report Card. Report. UNSPECIFIED, Cairns, QLD, Australia.

Collier, Catherine, Langlois, Lucas, Ow, Yan, Johansson, Charlotte, Giammusso, Manuela, Adams, Matthew, O'brien, Katherine, and Uthicke, Sven (2018) Losing a winner: thermal stress and local pressures outweigh the positive effects of ocean acidification for tropical seagrasses. New Phytologist, 219 (3). pp. 1005-1017.

Critchell, Kay, and Hoogenboom, Mia O. (2018) Effects of microplastic exposure on the body condition and behaviour of planktivorous reef fish (Acanthochromis polyacanthus). PLoS ONE, 13 (3). e0193308.

Cook, Peter G., Rodellas, Valentí, Adnrisoa, Aladin, and Stieglitz, Thomas C. (2018) Exchange across the sediment-water interface quantified from porewater radon profiles. Journal of Hydrology, 559. pp. 873-883.

Chartrand, Kathryn M., Szabó, Milán, Sinutok, Sutinee, Rasheed, Michael A., and Ralph, Peter J. (2018) Living at the margins - the response of deep-water seagrasses to light and temperature renders them susceptible to acute impacts. Marine Environmental Research, 136. 126 - 138.

Cook, Peter G., Rodellas, Valentí, and Stieglitz, Thomas C. (2018) Quantifying surface water, porewater, and groundwater interactions using tracers: tracer fluxes, water fluxes, and end‐member concentrations. Water Resources Research, 54 (3). pp. 2452-2465.

Ceccarelli, Daniela M., Loffler, Zoe, Bourne, David G., Al Moajil-Cole, Grace S., Boström Einarsson, Lisa, Evans-Illidge, Elizabeth, Fabricius, Katharina, Glasl, Bettina, Marshall, Paul, McLeod, Ian, Read, Mark, Schaffelke, Britta, Smith, Adam K., Jorda, Georgina T., Williamson, David H., and Bay, Line (2018) Rehabilitation of coral reefs through removal of macroalgae: state of knowledge and considerations for management and implementation. Restoration Ecology, 26 (5). pp. 827-838.

Chartrand, K.M., Rasheed, M.A., and Carter, A.B. (2018) Seagrasses in Port Curtis and Rodds Bay 2017: annual long-term monitoring. Report. James Cook University, Cairns, QLD, Australia.

Carter, A.B., Mellors, J.E., and Rasheed, M.A. (2018) Torres Strait Seagrass 2018 Report Card. Report. James Cook University, Cairns, QLD, Australia.

Carter, A.B., and Rasheed, M.A. (2018) Torres Strait Seagrass Long-term Monitoring: dugong sanctuary, Dungeness Reef and Orman Reefs. Report. James Cook University, Cairns, QLD, Australia.

Caron, Alexandra G.M., Thomas, Colette R., Berry, Kathryn L.E., Motti, Cherie A., Ariel, Ellen, and Brodie, Jon E. (2018) Validation of an optimised protocol for quantification of microplastics in heterogenous samples: a case study using green turtle chyme. MethodsX, 5. pp. 812-823.

Cooper, Michelle, Lewis, Stephen E., Stieglitz, Thomas C., and Smithers, Scott G. (2018) Variability of the useful life of reservoirs in tropical locations: a case study from the Burdekin Falls Dam, Australia. International Journal of Sediment Research, 33. pp. 93-106.

Carter, A.B., Collier, C., Rasheed, M.A., McKenzie, L., and Udy, J. (2018) A framework for defining seagrass habitat for the Great Barrier Reef, Australia. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Carter, A.B., Davies, C.R., Emslie, M.J., Mapstone, B.D., Russ, G.R., Tobin, A.J., and Williams, A.J. (2017) Reproductive benefits of no-take marine reserves vary with region for an exploited coral reef fish. Scientific Reports, 7. 9693. pp. 1-12.

Clarke, David A., York, Paul H., Rasheed, Michael A., and Northfield, Tobin D. (2017) Does biodiversity–ecosystem function literature neglect tropical ecosystems? Trends in Ecology & Evolution, 32 (5). pp. 320-323.

Cumming, Erin, Jarvis, Jessie C., Sherman, Craig, York, Paul H., and Smith, Timothy M. (2017) Seed germination in a southern Australian temperate seagrass. PeerJ, 5. e3114. pp. 1-19.

Cousins, Stephen, Kennard, Mark J., and Ebner, Brendan C. (2017) Depth-related composition and structuring of tropical riverine fish assemblages revealed by baited video. Marine and Freshwater Research, 68 (10). pp. 1965-1975.

Carter, Alex, Davies, Jaclyn, Jarvis, Jessie, McCormack, Catherine, and Rasheed, Michael (2017) Development of a condition report card for variable and diverse seagrass meadows in ports. In: Proceedings of the Australasian Coasts & Ports 2017 Conference. pp. 1152-1158. From: Australasian Coasts & Ports 2017 Conference: working with nature, 21-23 June 2017, Cairns, QLD, Australia.

Carter, Alex, Wells, Jaclyn, and Rasheed, Michael (2017) Gladstone Healthy Harbour Partnership 2017 Report Card, ISP011: seagrass. Report. James Cook University, Cairns, QLD, Australia.

Cairns, Andi, Davis, Linda, and Pearson, Richard (2017) Guide to the riffle invertebrates of Australian Wet Tropics streams with a bibliography of their ecology. Report. TropWater, Townsville, QLD, Australia.

Clarke, David A., York, Paul H., Rasheed, Michael A., and Northfield, Tobin D. (2017) Identifying areas of need in tropical research: a reply to Stroud and Feeley. Trends in Ecology & Evolution, 32 (9). p. 628.

Collier, Catherine J., Xiang, Yan Ow, Langlois, Lucas, Uthicke, Sven, Johansson, Charlotte, Hrebien, Victoria, O'Brien, Kate, and Adams, Matthew P. (2017) Optimum temperatures for net primary productivity of three tropical seagrass species. Frontiers in Plant Science, 8. 1446. pp. 1-32.

Cook, Benjamin D., Adams, Mark, Unmack, Peter J., Burrows, Damien, Pusey, Bradley J., Perna, Colton, and Hughes, Jane M. (2017) Phylogeography of the mouth-brooding freshwater fish Glossamia aprion (Apogonidae) in northern and eastern Australia: historical biogeography and allopatric speciation. Biological Journal of the Linnean Society, 121 (4). pp. 833-848.

Cooper, Michelle, Lewis, Stephen E., and Smithers, Scott G. (2017) Spatial and temporal dynamics of suspended sediment causing persistent turbidity in a large reservoir: Lake Dalrymple, Queensland, Australia. Marine and Freshwater Research, 68 (7). pp. 1377-1390.

Carter, A., Coles, R., McKenna, S., and Rasheed, M. (2017) Spatial management tools for coastal seagrasses in Queensland, Australia. In: Proceedings of the Australasian Coasts & Ports 2017 Conference. pp. 226-232. From: Proceedings of the Australasian Coasts & Ports 2017 Conference, 21-23 June 2017, Cairns, QLD, Australia.

Carter, A.B., Wells, J.N., and Rasheed, M.A. (2017) Torres Strait Seagrass – Dungeness Reef Baseline Survey and Dugong Sanctuary Long-term Monitoring. Report. James Cook University, Cairns, QLD, Australia.

Canning, A.D., Death, R.G., and Gardner, E.M. (2017) The effect of forest canopy and flood disturbance on New Zealand stream food web structure and robustness. Austral Ecology, 43 (3). pp. 352-358.

Collier, C.J., Adams, M.P., Langlois, L., Waycott, M., O'Brien, K.R., Maxwell, P.S., and McKenzie, L. (2016) Thresholds for morphological response to light reduction for four tropical seagrass species. Ecological Indicators, 67. pp. 358-366.

Chaiechi, Taha, Stoeckl, Natalie, Jarvis, Diane, Lewis, Stephen, and Brodie, Jon (2016) Assessing the impact of price changes and extreme climatic events on sediment loads in a large river catchment near the Great Barrier Reef. Australian Journal of Agricultural and Resource Economics, 60 (3). pp. 386-405.

Carter, Alex, Bryant, Catherine, Davies, Jaclyn, and Rasheed, Michael (2016) Gladstone Healthy Harbour Partnership 2016 Report Card: ISP011: seagrass. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Clayton, P.D., and Pearson, R.G. (2016) Harsh habitats? Waterfalls and their faunal dynamics in tropical Australia. Hydrobiologia, 775 (1). pp. 123-137.

Connolly, Rod, Dunn, Ryan, Jackson, Emma, Kristensen, Erik, Maxwell, Paul, Pearson, Ryan, Rasheed, Michael, and York, Paul (2016) Gold Coast Seagrass Sensitivities and Resilience (SRMP-003). Report. Griffith University, Gold Coast, QLD, Australia.

Connolly, Niall, Pearson, Richard, and Pearson, Benjamin (2016) Riparian vegetation and sediment gradients determine invertebrate diversity in streams draining an agricultural landscape. Agriculture, Ecosystems and Environment, 221. pp. 163-173.

Clark, Tara R., Leonard, Nicole D., Zhao, Jian-xin, Brodie, Jon, McCook, Laurence J., Wachenfeld, David R., Nguyen, Ai Duc, Markham, Hannah L., and Pandolfi, John M. (2016) Historical photographs revisited: a case study for dating and characterizing recent loss of coral cover on the inshore Great Barrier Reef. Scientific Reports, 6. 19285. pp. 1-14.

Carter, A.B, and Rasheed, M.A. (2016) Assessment of Key Dugong and Turtle Seagrass Resources in North-west Torres Strait. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Cooper, W.E., Kudo, H., and Duke, Norman C. (2016) Bruguiera hainesii C.G.Rogers (Rhizophoraceae), an endangered species recently discovered in Australia. Austrobaileya, 9 (4). pp. 481-488.

Collier, Catherine J., Langlois, Lucas, Zemoi, Rahel, Martin, Katherine, and McKenzie, Len (2016) Developing and refining biological indicators for condition assessments in an integrated monitoring program. Report. James Cook University, Cairns, Australia.

Collier, Catherine J., Chartrand, Katie, Honchin, Carol, Fletcher, Adam, and Rasheed, Michael (2016) Light thresholds for seagrasses of the GBRWHA: a synthesis and guiding document. Report. James Cook University, Cairns, Australia.

Chartrand, Kathryn M., Bryant, Catherine V., Carter, Alexandra B., Ralph, Peter J., and Rasheed, Michael A. (2016) Light thresholds to prevent dredging impacts on the Great Barrier Reef seagrass, Zostera muelleri ssp. capricorni. Frontiers in Marine Science, 3. 106.

Critchell, Kay, and Lambrechts, Jonathan (2016) Modelling accumulation of marine plastics in the coastal zone; what are the dominant physical processes? Estuarine, Coastal and Shelf Science , 171. pp. 111-122.

Capon, Samatha, James, Cassandra, and George, Amy (2016) Riverine trees and shrubs. In: Capon, Samatha J., James, Cassandra S., and Reid, Michael, (eds.) Vegetation of Australian Riverine Landscapes: biology, ecology and management. CSIRO Publishing, Melbourne, VIC, Australia, pp. 119-141.

Carter, Alex B., McKenna, Skye A., Rasheed, Michael A., McKenzie, Len J., and Coles, Robert G. (2016) Seagrass mapping synthesis: a resource for coastal management in the Great Barrier Reef World Heritage Area. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Coles, R.G., Rasheed, M.A., Grech, A., and McKenzie, L.J. (2016) Seagrass meadows of northeastern Australia. In: Finlayson, C.M., Milton, G.R., Prentice, R.C., and Davidson, N.C., (eds.) The Wetland Book: distribution description and conservation. Springer, Dordrecht, The Netherlands, pp. 1-9.

Capon, Samatha J., Porter, John, and James, Cassandra S. (2016) Vegetation of Australia's desert river landscapes. In: Capon, Samatha J., James, Cassandra S., and Reid, Michael, (eds.) Vegetation of Australian Riverine Landscapes: biology, ecology and management. CSIRO Publishing, Melbourne, VIC, Australia, pp. 239-258.

Connolly, N.M., Pearson, R.G., Loong, D., Maughan, M., and Brodie, J. (2015) Water quality variation along streams with similar agricultural development but contrasting riparian vegetation. Agriculture, Ecosystems and Environment, 213. pp. 11-20.

Critchell, K., Grech, A., Schlaefer, J., Andutta, F.P., Lambrechts, J., Wolanski, E., and Hamann, M. (2015) Modelling the fate of marine debris along a complex shoreline: lessons from the Great Barrier Reef. Estuarine, Coastal and Shelf Science , 167 (Part B). pp. 414-426.

Carter, A.B., Davies, J.D., Bryant, C.V., Jarvis, J.C., McKenna, S.A., and Rasheed, M.A. (2015) Seagrasses in Port Curtis and Rodds Bay 2014: annual long-term monitoring, biannual western basin, and updated baseline survey. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Coles, Robert G., Rasheed, Michael A., McKenzie, Len J., Grech, Alana, York, Paul H., Sheaves, Marcus, McKenna, Skye, and Bryant, Catherine (2015) The Great Barrier Reef World Heritage Area seagrasses: managing this iconic Australian ecosystem resource for the future. Estuarine, Coastal and Shelf Science , 153. A1-A12.

Carter, Alex, Bryant, Catherine, Jarvis, Jessie, York, Paul, and Rasheed, Michael (2015) Developing thresholds and indicators of seagrass meadow condition using long-term monitoring data. In: Abstracts from the 52nd Australian Marine Science Association Annual Conference. p. 90. From: AMSA 2015: 52nd Australian Marine Science Association Annual Conference, 5-9 July 2015, Geelong, VIC, Australia.

Carter, Alex, Jarvis, Jessie, Bryant, Catherine, and Rasheed, Michael (2015) Development of seagrass indicators for the Gladstone Healthy Harbour Partnership report card. Report. James Cook University, Cairns, QLD, Australia.

Creighton, Colin, Boon, Paul I., Brookes, Justin D., and Sheaves, Marcus (2015) Repairing Australia's estuaries for improved fisheries production: what benefits, at what cost? Marine and Freshwater Research, 66 (6). pp. 493-507.

Carter, Alex, Taylor, Helen, and Rasheed, Michael (2014) Torres Strait mapping: seagrass consolidation: 2002-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, A.B., Taylor, H.A., McKenna, S.A., York, P.Y., and Rasheed, M.A. (2014) The effects of climate on seagrasses in the Torres Strait: 2011-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alex, Taylor, Helen, and Rasheed, Michael (2014) Torres Strait dugong sanctuary: deepwater seagrass monitoring 2010-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, A.B., Taylor, H.A., McKenna, S.A., and Rasheed, M.A. (2014) Long-term seagrass monitoring in the Port of Thursday Island: March 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Cullen-Unsworth, Leanne C., Nordlund, Lina Mtwana, Paddock, Jessica, Baker, Susan, McKenzie, Len, and Unsworth, Richard K.F. (2014) Seagrass meadows globally as a coupled social–ecological system: implications for human wellbeing. Marine Pollution Bulletin, 83 (2). pp. 387-397.

Carter, Alex, and Rasheed, Michael (2014) Critical marine habitats in high risk areas, South Warden Reef to Howick Group region: 2013 atlas. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alex B., Davies, Campbell R., Mapstone, Bruce D., Russ, Garry R., Tobin, Andrew J., and Williams, Ashley J. (2014) Effects of region, demography, and protection from fishing on batch fecundity of common coral trout (Plectropomus leopardus). Coral Reefs, 33 (3). pp. 751-763.

Collier, Catherine J., Devlin, Michelle, Langlois, Lucas, McKenzie, Len J., Petus, Caroline, Da Silva, Eduardo Teixeira, McMahon, Kathryn, Adams, Matthew, O'Brien, Kate, Statton, John, and Waycott, Michelle (2014) Final report on thresholds and indicators of declining water quality as tools for tropical seagrass management. Report. James Cook University, Townsville, Australia.

Carter, A.B., Russ, G.R., Tobin, A.J., Williams, A.J., Davies, C.R., and Mapstone, B.D. (2014) Spatial variation in the effects of size and age on reproductive dynamics of common coral trout Plectropomus leopardus. Journal of Fish Biology, 84 (4). pp. 1074-1098.

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Cooke, Steven J., Midwood, Jonathan D., Thiem, Jason D., Klimley, Peter, Lucas, Martin C., Thorstad, Eva B., Eiler, John, Holbrook, Chris, and Ebner, Brendan C. (2013) Tracking animals in freshwater with electronic tags: past, present and future. Animal Biotelemetry, 1 (May). 5. pp. 1-19.

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Carter, Alex, and Rasheed, Michael (2013) Critical marine habitats in high risk areas: Bathurst Bay region: 2012 atlas. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

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Carroll, Chris, Waters, David, Vardy, Suzanne, Silburn, David M., Attard, Steve, Thorburn, Peter J., Davis, Aaron M., Halpin, Neil, Schmidt, Michael, Wilson, Bruce, and Clark, Andrew (2012) A paddock to reef monitoring and modelling framework for the Great Barrier Reef: paddock and catchment component. Marine Pollution Bulletin, 65 (4-9). pp. 136-149.

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Costanza, R., Bohensky, E., Butler, J.R.A., Bohnet, I., Delisle, A., Fabricius, K., Gooch, M., Kubiszewski, I., Lukacs, G., Pert, P., and Wolanski, E. (2011) A scencario analysis of climate change and ecosystem services for the Great Barrier Reef. In: Wolanski, Eric, McLusky, Donald, van den Belt, M., and Costanza, R., (eds.) Ecological Economics of Estuaries and Coasts. Treatise on Estuarine and Coastal Science, 12 . Academic Press, London, UK, pp. 305-326.

Chen, Zhongyuan, Yanagi, Tetsuo, and Wolanski, Eric (2010) EMECS8 – harmonizing catchment and estuary. Estuarine, Coastal and Shelf Science, 86 (3). v-v.

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Cannicci, Stefano, Burrows, Damien, Fratini, Sara, Smith III, Thomas J., Offenberg, Joachim, and Dahdouh-Guebas, Farid (2008) Faunal impact on vegetation structure and ecosystem function in mangrove forests: a review. Aquatic Botany, 89 (2). pp. 189-200.

Coughlin, Tom, O'Reagain, Peter, Nelson, Brigid, Butler, Barry, and Burrows, Damien (2008) Managing for Water Quality within Grazing Lands for the Burdekin Catchment: guidelines for land managers. Report. Burdekin Solutions, Townsville, QLD, Australia.

Connolly, Niall M., and Pearson, Richard G. (2007) The effect of fine sedimentation on tropical stream macroinvertebrate assemblages: a comparison using flow-through artificial stream channels and recirculating mesocosms. Hydrobiologia, 592 (1). pp. 423-438.

Coles, Rob, Grech, Alana, Dew, Kara, Zeller, Brad, and McKenzie, Leonard (2007) A preliminary report on the adequacy of protection provided to species and benthic habitats in the east coast otter trawl fishery by the current system of closures. Report. UNSPECIFIED, Cairns, QLD, Australia.

Cappo, Mike, De'ath, Glenn, Boyle, Steve, Aumend, James, Olbrich, Roland, Hoedt, Frank, Perna, Colton, and Brunskill, Gregg (2005) Development of a robust classifier of freshwater residence in barramundi (Lates calcarifer) life histories using elemental ratios in scales and boosted regression trees. Marine and Freshwater Research, 56 (5). pp. 713-723.

Cooper, Michelle, Faithful, John W., and Shields, Graham (2005) Sediment dynamics of a large tropical river system: the Burdekin River and Lake Dalrymple, Australia. In: Proceedings of 10th International Symposium on the interactions between sediments and water. p. 198. From: 10th International Symposium on the interactions between sediments and water, 28 August - 2 September 2005, Bled, Slovenia.

Connolly, N. M., Crossland, M.R., and Pearson, R.G. (2004) Effect of low dissolved oxygen on survival, emergence, and drift of tropical stream macroinvertebrates. Journal of the North American Benthological Society, 23 (2). pp. 251-270.

Connor, Ron, Milsom, John, Melzer, Alistair, Butler, Barry M., Faithful, John W., Dennison, William, Lloyd, Trevor, and Swaine, Greg (2003) Ecosystem-based assessment and management of marine and estuarine systems at the Queensland Nickel Yabulu Refinery, Townsville. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.

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Connolly, Niall, Doak, Naomi, and Pearson, Richard (1996) Environmental literature scan of the Barron River Catchment. Report. James Cook University, Townsville, QLD, Australia.

Crees, Mark, and Butler, Barry (1996) Feasibilty of using constructed wetlands for the treatment of effluent at Horseshoe Bay. Report. James Cook University, Townsville, QLD, Australia.

Clayton, P.D., and Pearson, R.G. (1996) Instream effects of dunder application to canefields in the Sarina region, Queensland: continued monitoring. Report. James Cook University, Townsville, QLD, Australia.

Critchell, Kay Lilian (2018) Using hydrodynamic models to understand the impacts and risks of plastic pollution. PhD thesis, James Cook University.

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Dubuc, Alexia, Collins, Geoffrey, Coleman, Laura, Waltham, Nathan J., Rummer, Jodie L., and Sheaves, Marcus (2021) Association between physiological performance and short temporal changes in habitat utilisation modulated by environmental factors. Marine Environmental Research, 179. 105448.

Dalby, Oliver, Sinha, Isadora, Unsworth, Richard K.F., McKenzie, Len J., Jones, Benjamin L., and Cullen-Unsworth, Leanne C. (2021) Citizen science driven big data collection requires improved and inclusive societal engagement. Frontiers in Marine Science, 8. 610397.

Duarte de Paula Costa, Micheli, Lovelock, Catherine E., Waltham, Nathan J., Young, Mary, Adame, Maria F., Bryant, Catherine V., Butler, Don, Green, David, Rasheed, Michael A., Salinas, Cristian, Serrano, Oscar, York, Paul H., Whitt, Ashley A., and Macreadie, Peter I. (2021) Current and future carbon stocks in coastal wetlands within the Great Barrier Reef catchments. Global Change Biology, 27 (14). pp. 3257-3271.

Dunstan, Laura, Pulman, Lisa, Waltham, Nathan, and Sargent, Sue (2021) Finding the sweet spot: Can social marketing encourage cane farmers to change practices for water quality outcomes in the Great Barrier Reef Catchment? In: Hay, Rachel, Eagle, Lynne, and Bhati, Abhishek, (eds.) Broadening Cultural Horizons in Social Marketing: comparing case studies from Asia-Pacific. Springer, Singapore, pp. 29-46.

Duke, Norman C., Hutley, Lindsay B., Mackenzie, Jock R., and Burrows, Damien (2021) Processes and factors driving change in mangrove forests: an evaluation based on the mass dieback event in Australia’s Gulf of Carpentaria. In: Canadell, Josep G., and Jackson, Robert B., (eds.) Ecosystem Collapse and Climate Change. Ecological Studies, 241 . Springer International Publishing, Cham, Switzerland, pp. 221-264.

Davis, Aaron M., Webster, Anthony J., Fitch, Peter, Fielke, Simon, Taylor, Bruce M., Morris, Sheriden, and Thorburn, Peter J. (2021) The changing face of science communication, technology, extension and improved decision-making at the farm-water quality interface. Marine Pollution Bulletin, 169. 112534.

Devlin, Michelle, Smith, Andy, Graves, Carolyn A., Petus, Caroline, Tracey, Dieter, Maniel, Michael, Hooper, Eryn, Kotra, Kryshna, Samie, Erie, Loubser, David, and Lyons, Brett P. (2020) Baseline assessment of coastal water quality, in Vanuatu, South Pacific: insights gained from in-situ sampling. Marine Pollution Bulletin, 160. 111651.

Davis, Aaron M., Pusey, Bradley J., and Betancur-R, Ricardo (2020) Effects of adoption of freshwater residency on life-history ecology of terapontid grunters. Freshwater Biology, 65. pp. 1139-1152.

Duke, Norman (2020) Mangrove harbingers of coastal degradation seen in their responses to global climate change coupled with ever-increasing human pressures. Human Ecology Journal of the Commonwealth Human Ecology Council – Mangrove Special Issue, 30 (April 2020). pp. 19-23.

Dahdouh-guebas, Farid, Ajonina, Gordon N., Amir, A. Aldrie, Andradi-brown, Dominic A., Aziz, Irfan, Balke, Thorsten, Barbier, Edward B., Cannicci, Stefano, Cragg, Simon M., Cunha-Lignon, Marília, Curnick, David J., Duarte, Carlos M., Duke, Norman C., Endsor, Charlie, Fratini, Sara, Feller, Ilka C., Fromard, François, Hugé, Jean, Huxham, Mark, Kairo, James G., Kajita, Tadashi, Kathiresan, Kandasamy, Koedam, Nico, Lee, Shing Yip, Lin, Hsing-Juh, Mackenzie, Jock R., Mangora, Mwita M., Marchand, Cyril, Meziane, Tarik, Minchinton, Todd E., Pettorelli, Nathalie, Polanía, Jaime, Polgar, Gianluca, Poti, Meenakshi, Primavera, Jurgenne, Quarto, Alfredo, Rog, Stefanie M., Satyanarayana, Behara, Schaeffer-Novelli, Yara, Spalding, Mark D., Van der Stocken, Tom, Wodehouse, Dominic, Yong, Jean W.H., Zimmer, Martin, and Friess, Daniel A. (2020) Public perceptions of mangrove forests matter for their conservation. Frontiers in Marine Science, 7. 603651.

Duke, N.C. (2020) A systematic revision of the vulnerable mangrove genus Pelliciera (Tetrameristaceae) in equatorial America. Blumea, 65. pp. 107-120.

Dubuc, Alexia, Baker, Ronald, Marchand, Cyril, Waltham, Nathan J., and Sheaves, Marcus (2019) Hypoxia in mangroves: occurrence and impact on valuable tropical fish habitat. Biogeosciences, 16 (20). pp. 3959-3976.

Donaldson, James A., Drews, Paulo, Bradley, Michael, Morgan, David L., Baker, Ronald, and Ebner, Brendan C. (2019) Countering low visibility in video survey of an estuarine fish assemblage. Pacific Conservation Biology, 26 (2). pp. 190-200.

Dunn, Ryan J.K., Welsh, David T., Teasdale, Peter R., Gilbert, Franck, Poggiale, Jean-Christopher, and Waltham, Nathan J. (2019) Effects of the bioturbating marine yabby Trypaea australiensis on sediment properties in sandy sediments receiving mangrove leaf litter. Journal of Marine Science and Engineering, 7 (12). 426.

David, Marine, Bailly-Comte, Vincent, Munaron, Dominique, Fiandrino, Annie, and Stieglitz, Thomas C. (2019) Groundwater discharge to coastal streams – a significant pathway for nitrogen inputs to a hypertrophic Mediterranean coastal lagoon. Science of the Total Environment, 677. pp. 142-155.

Devloo-Delva, Floriaan, Huerlimann, Roger, Chua, Gladys, Matley, Jordan K., Heupel, Michelle R., Simpfendorfer, Colin A., and Maes, Gregory E. (2019) How does marker choice affect your diet analysis: comparing genetic markers and digestion levels for diet metabarcoding of tropical-reef piscivores. Marine and Freshwater Research, 70 (1). MF17209. pp. 8-18.

Duke, N.C., and Larkum, A.W.D. (2019) Mangroves and seagrasses. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO, Melbourne, VIC, Australia, pp. 219-228.

Dubuc, Alexia, Waltham, Nathan J., Baker, Ronald, Marchand, Cyril, and Sheaves, Marcus (2019) Patterns of fish utilisation in a tropical IndoPacific mangrove-coral seascape, New Caledonia. PLoS ONE, 14 (4). e0207168.

Devlin, Michelle J., Lyons, Brett P., Bacon, John, Edmonds, Nathan, Tracey, Dieter, Al Zaidan, Abdullah S., Al Ajmi, Fahad, Al-Wazzan, Zainab A., Al-Hussain, Mona M., Al Khaled, Hessa, and Le Quesne, Will J.F. (2019) Principles to enable comprehensive national marine ecosystem status assessments from disparate data: the state of the marine environment in Kuwait. Estuarine, Coastal and Shelf Science, 230. 106407.

Dunn, Ryan J.K., Waltham, Nathan J., Huang, Jianyin, Teasdale, Peter R., and King, Brian A. (2019) Protecting water quality in urban estuaries: Australian case studies. In: Wolanski, Eric, Day, John W., Elliott, Michael, and Ramachandran, Ramesh, (eds.) Coasts and Estuaries: the future. Elsevier, Oxford, United Kingdom, pp. 69-86.

Davis, Aaron M., and Neelamraju, Catherine (2019) Quantifying water quality improvements through use of precision herbicide application technologies in a dry-tropical, furrow-irrigated cropping system. Water, 11 (11). 2326.

Duke, Norman C., Field, Colin, Mackenzie, Jock R., Meynecke, Jan-Olaf, and Wood, Apanie L. (2019) Rainfall and its possible hysteresis effect on the proportional cover of tropical tidal wetland mangroves and saltmarsh-saltpans. Marine and Freshwater Research, 70. pp. 1047-1055.

Dujon, Antoine M., Stieglitz, Thomas C., Amice, Erwan, and Webber, D.M. (2019) Snail leaps and bounds: drivers of the diel movement pattern of a large invertebrate, the Caribbean queen conch (Lobatus gigas), in a marginal inshore habitat. Canadian Journal of Zoology, 97 (5). pp. 436-445.

Duffy, J. Emmett, Benedetti-Cecchi, Lisandro, Trinanes, Joaquin, Muller-Karger, Frank E., Ambo-Rappe, Rohani, Boström, Christoffer, Buschmann, Alejandro H., Byrnes, Jarrett, Coles, Robert G., Creed, Joel, Cullen-Unsworth, Leanne C., Diaz-Pulido, Guillermo, Duarte, Carlos M., Edgar, Graham J., Fortes, Miguel, Goni, Gustavo, Hu, Chuanmin, Huang, Xiaoping, Hurd, Catriona L., Johnson, Craig, Konar, Brenda, Krause-Jensen, Dorte, Krumhansl, Kira, Macreadie, Peter, Marsh, Helene, McKenzie, Len J., Mieszkowska, Nova, Miloslavich, Patricia, Montes, Enrique, Nakaoka, Masahiro, Norderhaug, Kjell Magnus, Norlund, Lina M., Orth, Robert J., Prathep, Anchana, Putman, Nathan F., Samper-Villarreal, Jimena, Serrao, Ester A., Short, Frederick, Pinto, Isabel Sousa, Steinberg, Peter, Stuart-smith, Rick, Unsworth, Richard K.F., van Keulen, Mike, van Tussenbroek, Brigitta I., Wang, Mengqiu, Waycott, Michelle, Weatherdon, Lauren V., Wernberg, Thomas, and Yaakub, Siti Maryam (2019) Toward a coordinated global observing system for seagrasses and marine macroalgae. Frontiers in Marine Science, 6. 317. pp. 1-26.

Dale, Pat, Sporne, Ilva, Knight, Jon, Sheaves, Marcus, Eslami-Andergoli, Leila, and Dwyer, Patrick (2019) A conceptual model to improve links between science, policy and practice in coastal management. Marine Policy, 103. pp. 42-49.

Dale, Allan P., Vella, Karen, Gooch, Margaret, Potts, Ruth, Pressey, Robert L., Brodie, Jon, and Eberhard, Rachel (2018) Avoiding implementation failure in catchment landscapes: a case study in governance of the Great Barrier Reef. Environmental Management, 62. pp. 70-81.

Davis, Aaron M., Pusey, Brad J., and Pearson, Richard G. (2018) Big floods, big knowledge gap: food web dynamics in a variable river system. Ecology of Freshwater Fish, 27 (4). pp. 898-909.

Duke, N.C., and Kudo, H. (2018) Bruguiera × dungarra, a new hybrid between mangrove species B. exaristata and B. gymnorhiza (Rhizophoraceae) recently discovered in north-east Australia. Blumea, 63. pp. 279-285.

Duke, Norman C., and Mackenzie, Jock (2018) ECY Report 2017. Final report: East Cape York shoreline environmental surveys. External Commissioned Report. James Cook University, Townsville, QLD, Australia.

Daly, Ryan, Smale, Malcolm J., Singh, Sarika, Anders, Darrell, Shivji, Mahmood, Daly, Clare A.K., Lea, James S.E., Sousa, Lara L., Wetherbee, Bradley M., Fitzpatrick, Richard, Clarke, Christopher R., Sheaves, Marcus, and Barnett, Adam (2018) Refuges and risks: evaluating the benefits of an expanded MPA network for mobile apex predators. Diversity and Distributions, 24 (9). pp. 1217-1230.

Death, Russell, Canning, Adam, Magierowski, Regina, and Tonkin, Jonathan (2018) Why aren't we managing water quality to protect ecological health? In: [Presented at the 31st Annual FLRC Workshop]. From: 31st Annual FLRC Workshop, 7-9 February 2018, Auckland, New Zealand.

Datry, T., Foulquier, A., Corti, R., von Schiller, D., Tockner, K., Mendoza-Lera, C., Clement, J.C., Gessner, M.O., Moleon, M., Stubbington, R., Gucker, B., Albarino, R., Allen, D.C., Altermatt, F., Arce, M.I., Arnon, S., Banas, D., Banegas-Medina, A., Beller, E., Blanchette, M.L., Blanco-Libreros, J.F., Blessing, J.J., Boechat, I.G., Boersma, K.S., Bogan, M.T., Bonada, N., Bond, N.R., Brintrup Barria, K.C., Bruder, A., Burrows, R.M., Cancellario, T., Canhoto, C., Carlson, S.M., Cauvy-Fraunie, S., Cid, N., Danger, M., de Freitas Terra, Bianca, De Girolamo, A.M., de La Barra, Evans, del Campo, R., Diaz-Villanueva, V.D., Dyer, F., Elosegi, A., Faye, E., Febria, C., Four, B., Gafny, S., Ghate, S.D., Gomez, R., Gomez-Gener, L., Graça, M.A.S., Guareschi, S., Hoppeler, F., Hwan, J.L., Kubheka, S., Laini, A., Langhans, S.D., Leigh, C., Little, C.J., Lorenz, S., Marshall, J.C., Martin, E., McIntosh, A.R., Meyer, E.I., Milisa, M., Mlambo, M.C., Morais, M., Moya, N., Negus, P.M., Niyogi, D.K., Papatheodoulou, A., Pardo, I., Paril, P., Pauls, S.U., Pesic, V., Polasek, M., Robinson, C.T., Rodriguez-Lozano, P., Rolls, R.J., Sanchez-Montoya, M.M., Savic, A., Shumilova, O., Shridhar, K.R., Steward, A.L., Storey, R., Taleb, A., Uzan, A., Vander Vorste, Ross, Waltham, Nathan, Woelfle-Erskine, C., Zak, D., Zarfl, C., and Zoppini, A. (2018) A global analysis of terrestrial plant litter dynamics in non-perennial waterways. Nature Geoscience, 11. pp. 497-503.

Davey, Peter A., Pernice, Mathieu, Ashworth, Justin, Kuzhiumparambil, Unnikrishnan, Szabó, Milán, Dolferus, Rudy, and Ralph, Peter J. (2018) A new mechanistic understanding of light-limitation in the seagrass Zostera muelleri. Marine Environmental Research, 134. pp. 55-67.

Dunbar, Kimberley, Baker, Ronnie, and Sheaves, Marcus (2017) Effects of forest width on fish use of fringing mangroves in a highly urbanised tropical estuary. Marine and Freshwater Research, 68 (9). pp. 1764-1770.

Duke, Norman (2017) Climate calamity along Australia's gulf coast. Landscape Architecture Australia, 153. pp. 66-71.

Dubuc, Alexia, Waltham, Nathan, Malerba, Martino, and Sheaves, Marcus (2017) Extreme dissolved oxygen variability in urbanised tropical wetlands: the need for detailed monitoring to protect nursery ground values. Estuarine, Coastal and Shelf Science, 198 (Part A). pp. 163-171.

Duke, Norman C., Kovacs, John M., Griffiths, Anthony D., Preece, Luke, Hill, Duncan J. E., Van Oosterzee, Penny, Mackenzie, Jock, Morning, Hailey S., and Burrows, Damien (2017) Large-scale dieback of mangroves in Australia’s Gulf of Carpentaria: a severe ecosystem response, coincidental with an unusually extreme weather event. Marine and Freshwater Research, 68 (10). MF16322. pp. 1816-1829.

Duke, Norman (2017) Love at low tide: why mangroves deserve our admiration. Wildlife Australia, 54 (3). pp. 29-33.

Duke, Norman C. (2017) Mangrove floristics and biogeography revisited: further deductions from biodiversity hot spots, ancestral discontinuities and common evolutionary processes. In: Rivera-Monroy, Victor H., Lee, Shing Yip, Kristensen, Erik, and Twilley, Robert R., (eds.) Mangrove Ecosystems: A Global Biogeographic Perspective - Structure, Function and Services. Springer International Publishing, Cham, Switzerland, pp. 17-53.

Dunn, Ryan J.K., Waltham, Nathan, Teasdale, Peter R., Roberston, David, and Welsh, David T. (2017) Short-term nitrogen and phosphorus release during the disturbance of surface sediments: a case study in an urbanised estuarine system (Gold Coast Broadwater, Australia). Journal of Marine Science and Engineering, 5 (2). pp. 1-13.

Delandmeter, Philippe, Lambrechts, Jonathan, Marmorino, George O., Legat, Vincent, Wolanski, Eric, Remacle, Jean-François, Chen, Wei, and Deleersnijder, Eric (2017) Submesoscale tidal eddies in the wake of coral islands and reefs: satellite data and numerical modelling. Ocean Dynamics, 67 (7). pp. 897-913.

Davis, Aaron M., and Betancur, Ricardo (2017) Widespread ecomorphological convergence in multiple fish families spanning the marine-freshwater interface. Proceedings of the Royal Society of London Series B, Biological Sciences, 284 (1854). 20170565.

Duke, Norman C. (2016) Oil spill impacts on mangroves: recommendations for operational planning and action based on a global review. Marine Pollution Bulletin, 109 (2). pp. 700-715.

Dichmont, Catherine M., Dutra, Leo X.C., Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Deng, Roy A., van Putten, Elizabeth I., Pascual, Ricardo, Dambacher, Jeffrey M., Warne, Michael St.J., Quinn, Ross H., Thébaud, Olivier, Bennett, John, Read, Mark, Wachenfeld, David, Davies, Julia, Garland, Anna, Dunning, Malcolm, Collier, Catherine, Waycott, Michelle, and Playford, Julia (2016) A generic method of engagement to elicit regional coastal management options. Ocean & Coastal Management, 124. pp. 22-32.

Davis, Aaron M., Tink, Michelle, Rohde, Ken, and Brodie, Jon E. (2016) Urea contributions to dissolved 'organic' nitrogen losses from intensive, fertilised agriculture. Agriculture, Ecosystems and Environment, 223. pp. 190-196.

Davis, Aaron M., and Moore, Alex R. (2016) Conservation potential of artificial water bodies for fish communities on a heavily modified agricultural floodplain. Aquatic Conservation: marine and freshwater ecosystems , 26 (6). pp. 1184-1196.

Davis, Aaron M., Unmack, Peterj., Vari, Richard P., and Betancur-R, Ricardo (2016) Herbivory promotes dental disparification and macroevolutionary dynamics in grunters (Teleostei: Terapontidae), a freshwater adaptive radiation. American Naturalist, 187 (3). pp. 320-333.

Dutra, Leo X.C., Dichmont, Catherine M., van Putten, Ingrid E., Thébaud, Oliver, Deng, Roy A., Pascual, Ricardo, Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Warne, M.St.J., Quinn, R., Bennett, J., Read, M., Wachenfeld, D., Collier, Catherine, Waycott, Michelle, Davies, J., Garland, A., Dunning, M., and Playford, J. (2016) How important is the coast? A survey of coastal objectives in an Australian regional city. Marine Policy, 71. pp. 229-241.

Dale, Allan, Vella, Karen, Pressey, Robert L., Brodie, Jon, Gooch, Margaret, Potts, Ruth, and Eberhard, Rachel (2016) Monitoring and adaptively reducing system-wide governance risks facing the GBR: final report. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Davis, Aaron M., and Pradolin, Jordan (2016) Precision herbicide application technologies to decrease herbicide losses in furrow irrigation outflows in a northeastern Australian cropping system. Journal of Agricultural and Food Chemistry, 64 (20). pp. 4021-4028.

Davis, Aaron M., Pearson, Richard G., Brodie, Jon E., and Butler, Barry (2016) Review and conceptual models of agricultural impacts and water quality in waterways of the Great Barrier Reef catchment area. Marine and Freshwater Research, 68 (1). pp. 1-19.

Dale, Allan P., Vella, Karen, Pressey, Robert L., Brodie, Jon, Gooch, Margaret, Potts, Ruth, and Eberhard, Rachel (2016) Risk analysis of the governance system affecting outcomes in the Great Barrier Reef. Journal of Environmental Management, 183 (Part 3). pp. 712-721.

Davies, J.D., Bryant, C.V., Carter, A.B., and Rasheed, M.A. (2016) Seagrasses in Port Curtis and Rodds Bay 2015: annual long-term monitoring. Report. James Cook University, Cairns, QLD, Australia.

Davies, Claire H., Coughlan, Alex, Hallegraeff, Gustaaf, Ajani, Penelope, Armbrecht, Linda, Atkins, Natalia, Bonham, Prudence, Brett, Steve, Brinkman, Richard, Burford, Michele, Clementson, Lesley, Coad, Peter, Coman, Frank, Davies, Diana, Dela-Cruz, Jocelyn, Devlin, Michelle, Edgar, Steven, Eriksen, Ruth, Furnas, Miles, Hassler, Christel, Hill, David, Holmes, Michael, Ingleton, Tim, Jameson, Ian, Leterme, Sophie C., Lønborg, Christian, McLaughlin, James, McEnnulty, Felicity, Mckinnon, A. David, Miller, Margaret, Murray, Shauna, Nayar, Sasi, Patten, Renee, Pritchard, Tim, Proctor, Roger, Purcell-Meyerink, Diane, Raes, Eric, Rissik, David, Ruszczyk, Jason, Slotwinski, Anita, Swadling, Kerrie M., Tattersall, Katherine, Thompson, Peter, Thomson, Paul, Tonks, Mark, Trull, Thomas W., Uribe-Palomino, Julian, Waite, Anya M., Yauwenas, Rouna, Zammit, Anthony, and Richardson, Anthony J. (2016) A database of marine phytoplankton abundance, biomass and species composition in Australian waters. Scientific Data, 3. 160043. pp. 1-12.

Devlin, M.J., Massoud, M.S., Hamid, S.A., Al-Zaidan, A., Al-Sarawi, H., Al-Enezi, M., Al-Ghofran, L., Smith, A.J., Barry, J., Stentiford, G.D., Morris, S., da Silva, E.T., and Lyons, B.P. (2015) Changes in the water quality conditions of Kuwait's marine waters: long term impacts of nutrient enrichment. Marine Pollution Bulletin, 100 (2). pp. 607-620.

Devlin, Michelle J., Petus, Caroline, Da Silva, Eduardo, Tracey, Dieter, Wolff, Nicholas H., Waterhouse, Jane, and Brodie, Jon (2015) Water quality and river plume monitoring in the Great Barrier Reef: an overview of methods based on ocean colour satellite data. Remote Sensing, 7 (10). pp. 12909-12941.

Davies, Jaclyn, Scott, Emma, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Duplication BPAR Monitoring: May - August 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Dafforn, Katherine A., Mayer-Pinto, Mariana, Morris, Rebecca L., and Waltham, Nathan J. (2015) Application of management tools to integrate ecological principles with the design of marine infrastructure. Journal of Environmental Management, 158. pp. 61-73.

Duke, Norman C., Mackenzie, Jock, Wood, Apanie, and Burrows, Damien (2015) New partnership network helps to protect Australian mangroves and saltmarsh. Wetlands Australia, National Wetlands Update (27). pp. 48-50.

Devillers, Rodolphe, Pressey, Robert L., Grech, Alana, Kittinger, John N., Edgar, Graham J., Ward, Trevor, and Watson, Reg (2015) Reinventing residual reserves in the sea: are we favouring ease of establishment over need for protection? Aquatic Conservation: marine and freshwater ecosystems , 25 (4). pp. 480-504.

Davies, Jaclyn, Taylor, Helen, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Dupliaction BPAR Monitoring February/ March - May 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Devlin, Michelle J., Petus, Caroline, Da Silva, Eduardo, Tracey, Dieter, Wolff, Nicholas, Brodie, Jon, Waterhouse, Jane, and Martin, Katherine (2015) Improvements to water quality monitoring through the inclusion of ocean colour products correlated with in-situ water quality gradients for the Great Barrier Reef. In: Posters from the International Ocean Colour Science meeting. From: IOCS 2015: Second International Ocean Colour Science Meeting, 15-18 June 2015, San Fransisco, CA, USA.

Davies, Jaclyn, Scott, Emma, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Duplication BPAR Monitoring: November 2014 - March 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, Tol, Samantha, and Rasheed, Michael (2015) Port of Townsville annual monitoring and baseline survey: October 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Duke, Norman C., and Schmitt, Klaus (2015) Mangroves: unusual forests at the seas edge. In: Pancel, Laslo, and Köhl, Michael, (eds.) Tropical Forestry Handbook. Springer, Berlin, Germany, pp. 1-24.

Dao, Hoc Tan, Smith-Keune, Carolyn, Wolanski, Eric, Jones, Clive M., and Jerry, Dean R. (2015) Oceanographic currents and local ecological knowledge indicate, and genetics does not refute, a contemporary pattern of larval dispersal for the ornate spiny lobster, Panulirus ornatus in the south-east Asian archipelago. PLoS ONE, 10 (5). e0124568. pp. 1-19.

Davis, Aaron M., Pearson, Richard G., Kneipp, Ian J., Benson, Lee J., and Fernandes, Leanne (2015) Spatiotemporal variability and environmental determinants of invertebrate assemblage structure in an Australian dry-tropical river. Freshwater Science, 34 (2). pp. 634-647.

Devlin, Michelle, Fabricius, Katharina, Negri, Andrew, Brodie, Jon, Waterhouse, Jane, Uthicke, Sven, Collier, Catherine, Pressey, Bob, Augé, Amélie, Reid, Ben, Woodberry, Owen, Zhao, Jian-xin, Clarke, Tara, Pandolfi, John, and Bennett, John (2015) Water quality synthesis of NERP tropical ecosystems hub GBR water quality research outputs 2011-2014. Report. Reef and Rainforest Research Centre, Cairns, Australia.

Devlin, Michelle, Le Quesne, Will J.F., and Lyons, Brett P. (2015) The marine environment of Kuwait—emerging issues in a rapidly changing environment. Marine Pollution Bulletin, 100 (2). pp. 593-596.

Delandmeter, Philippe, Lewis, Stephen E., Lambrechts, Jonathan, Deleersnijder, Eric, Legat, Vincent, and Wolanski, Eric (2015) The transport and fate of riverine fine sediment exported to a semi-open system. Estuarine, Coastal and Shelf Science , 167 (Part B). pp. 336-346.

Davis, A.M., Lewis, S.E., Brodie, J.E., and Benson, Ash (2014) The potential benefits of herbicide regulation: a cautionary note for the Great Barrier Reef catchment area. Science of the Total Environment, 490. pp. 81-92.

DeBose, Jennifer L., and Paul, Valerie J. (2014) Chemical signatures of multi-species foraging aggregations are attractive to fish. Marine Ecology Progress Series, 498. pp. 243-248.

Davies, J.N., McKenna, S.A., Jarvis, J.C., Carter, A.B., and Rasheed, M.A. (2014) Port of Townsville annual monitoring and baseline survey: October 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Dichmont, Catherine M., Dutra, Leo X.C., van Putten, Ingrid, Deng, Roy, Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Pascual, Richardo, Warne, Michael, Quinn, Ross, Thébaud, Olivier, Bennett, John, Read, Mark, Wachenfeld, David, Davies, Julia, Garland, Anna, Dunning, Malcolm, Waycott, Michelle, Collier, Catherine, Dambacher, Jeffrey M., Playford, Julia, Harm, Rachel, Gribble, Neil, and Pitcher, Roland (2014) Design and implementation of management strategy evaluation for the Great Barrier Reef inshore (MSE-GBR). Report. Reef and Rainforest Research Centre, Cairns, Australia.

Davis, Aaron M., Unmack, Peter J., Pusey, Bradley J., Pearson, Richard G., and Morgan, David L. (2014) Evidence for a multi-peak adaptive landscape in the evolution of trophic morphology in terapontid fishes. Biological Journal of the Linnean Society, 113 (2). pp. 623-634.

Dunn, Ryan J.K., Waltham, Nathan J., Benfer, Nathan P., King, Brian A., Lemckert, Charles J., and Zigic, Sasha (2014) Gold Coast Broadwater: southern Moreton Bay, Southeast Queensland (Australia). In: Wolanski, Eric, (ed.) Estuaries of Australia in 2050 and Beyond. Estuaries of the World . Springer, Dordrecht, The Netherlands, pp. 93-110.

Duke, Norman (2014) Mangrove coast. In: Harff, Jan, Meschede, Martin, Petersen, Sven, and Thiede, Jörn, (eds.) Encyclopedia of Marine Geosciences. Encyclopedia of Earth Sciences Series . Springer, The Netherlands, pp. 412-422.

Davis, Aaron M., Lewis, Stephen E., O'Brien, Dominique S., Bainbridge, Zoë T., Bentley, Christie, Mueller, Jochen F., and Brodie, Jon E. (2014) Water resource development and high value coastal wetlands on the lower Burdekin floodplain, Australia. In: Wolanski, Eric, (ed.) Estuaries of Australia in 2050 and Beyond. Estuaries of the World . Springer, Dordrecht, The Netherlands, pp. 223-246.

Duke, Norman, Nagelkerken, Ivan, Agardy, Tundi, Wells, Sue, and Van Lavieren, Hanneke (2014) The importance of mangroves to people: a call to action. Report. United Nations Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK.

Davis, A.M., Thorburn, P.J., Lewis, S.E., Bainbridge, Z.T., Attard, S.J., Milla, R., and Brodie, J.E. (2013) Environmental impacts of irrigated sugarcane production: Herbicide run-off dynamics from farms and associated drainage systems. Agriculture, Ecosystems and Environment, 180. pp. 123-135.

Devlin, Michelle J., da Silva, Eduardo Teixeira, Petus, Caroline, Wenger, Amelia, Zeh, Daniel, Tracey, Dieter, Álvarez-Romero, Jorge G., and Brodie, Jon (2013) Combining in-situ water quality and remotely sensed data across spatial and temporal scales to measure variability in wet season chlorophyll-a: Great Barrier Reef lagoon (Queensland, Australia). Ecological Processes, 2. 31. pp. 1-22.

Davies, Jaclyn, McCormack, Catherine, McKenna, Skye, Taylor, Helen, and Rasheed, Michael (2013) Productive capacities of tropical seagrasses communities at three locations along the East Coast of Queensland and their potential for carbon sequestration. In: 50th Australian Marine Sciences Association annual conference: shaping the future: abstracts. p. 108. From: AMSA 2013 Shaping the Future: 50th Annual Conference of the Australian Marine Sciences Association, 1-7 July 2013, Gold Coast, Queensland.

Davies, J.D., McCormack, C.V., and Rasheed, M.A. (2013) Port Curtis and Rodds Bay Seagrass Monitoring Program. Biannual western basin & annual long term monitoring November 2012. Report. TropWATER, James Cook University, Cairns.

DeBose, J.L., Nuttall, M.F., Hickerson, E.L., and Schmahl, G.P. (2013) A high-latitude coral community with an uncertain future: Stetson Bank, northwestern Gulf of Mexico. Coral Reefs, 32 (1). pp. 225-267.

Davis, Aaron M., Unmack, Peter. J., Pusey, Bradley J., Pearson, Richard G., and Morgan, David L. (2013) Ontogenetic development of intestinal length and relationships to diet in an Australasian fish family (Terapontidae). BMC Evolutionary Biology, 13. 53. pp. 1-16.

Donaldson, James A., Ebner, Brendan C., and Fulton, Christopher J. (2013) Flow velocity underpins microhabitat selection by gobies of the Australian Wet Tropics. Freshwater Biology, 58 (5). pp. 1038-1051.

Devlin, Michelle, Petus, Caroline, da Silva, Eduardo Teixera, Alvarez-Romero, Jorge, Zeh, Daniel, Waterhouse, Jane, and Brodie, Jon (2013) Mapping of exposure to flood plumes, water types and exposure to pollutants (DIN, TSS) in the Great Barrier Reef: toward the production of operational risk maps for the world's most iconic marine ecosystem. Report Section. James Cook University, Townsville, QLD.

Dale, Allan, Vella, Karen, Pressey, Robert L., Brodie, Jon, Yorkston, Hugh, and Potts, Ruth (2013) A method for risk analysis across governance systems: a Great Barrier Reef case study. Environmental Research Letters, 8 (1). 015037. pp. 1-16.

Duke, Norm (2012) Mangroves of South-East Australia. In: Sainty, Geoff, Hosking, John, Carr, Geoff, and Adam, Paul, (eds.) Estuary plants and what's happening to them in south-east Australia. Sainty and Associates, Potts Point, Sydney, pp. 132-139.

Davis, A.M., Unmack, P.J., Pusey, B.J., Johnson, J.B., and Pearson, R.G. (2012) Marine-freshwater transitions are associated with the evolution of dietary diversification in terapontid grunters (Teleostei: Terapontidae). Journal of Evolutionary Biology, 25 (6). pp. 1163-1179.

Davis, Aaron M., Pusey, Bradley J., and Pearson, Richard G. (2012) Contrasting intraspecific dietary shifts in two terapontid assemblages from Australia's wet-dry tropics. Ecology of Freshwater Fish, 21 (1). pp. 42-56.

Davis, Aaron M., Lewis, Stephen E., Bainbridge, Zoë T., Glendenning, Lionel, Turner, Ryan D.R., and Brodie, Jon E. (2012) Dynamics of herbicide transport and partitioning under event flow conditions in the lower Burdekin region, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 182-193.

Devlin, Michelle, Wenger, Amelia, Da Silva, Eduardo, Alvarez Romero, Jorge G., Waterhouse, Jane, and McKenzie, Len (2012) Extreme weather conditions in the Great Barrier Reef: drivers of change? In: Proceedings of the 12th International Coral Reef Symposium. 21A_1. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Davis, Aaron M., Blanchette, Melanie L., Pusey, Bradley J., Jardine, Tim D., and Pearson, Richard G. (2012) Gut content and stable isotope analyses provide complementary understanding of ontogenetic dietary shifts and trophic relationships among fishes in a tropical river. Freshwater Biology, 57 (10). pp. 2156-2172.

Doshi, Amar, Pascoe, Sean, Thébaud, Olivier, Thomas, Colette R., Setiasih, Naneng, Hong, James Tan Chun, True, James, Schuttenberg, Heidi Z., and Heron, Scott F. (2012) Loss of economic value from coral bleaching in S.E. Asia. In: Proceedings of the 12th International Coral Reef Symposium. 22D_1. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Devlin, M.J., McKinna, L.W., Alvarez-Romero, J.G., Petus, C., Abott, B., Harkness, P., and Brodie, J. (2012) Mapping the pollutants in surface riverine flood plume waters in the Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 224-235.

Devlin, Michelle, Wenger, Amelia, Waterhouse, Jane, Alvarez-Romero, Jorge, Abbott, Brett, and da Silva, Eduardo Teixeira (2012) Reef Rescue Marine Monitoring Program: flood plume monitoring annual report 2010-11: incorporating results from the Extreme Weather Response Program flood plume monitoring. Report. James Cook University, Townsville, QLD, Australia.

Devlin, Michelle, Wenger, Amelia, Petus, Caroline, da Silva, Eduardo Teixeira, Debose, Jennifer, and Álvarez-Romero, Jorge (2012) Reef Rescue Monitoring Program: final report of JCU activities 2011/12: flood plumes and extreme weather monitoring for the Great Barrier Reef Marine Park Authority. Report. James Cook University, Townsville, QLD, Australia.

Davis, Aaron M., Pusey, Bradley, and Pearson, Richard G. (2012) Trophic ecology of terapontid fishes (Pisces: Terapontidae): the role of morphology and ontogeny. Marine and Freshwater Research, 63 (2). pp. 128-141.

Devlin, Michelle, and Lewis, Stephen (2011) Advancing Our Understanding of the Source, Transport and Impacts of Pesticides on the Great Barrier Reef and in Associated Ecosystems: a review of MTSRF research outputs, 2006-2010. Report. Reef and Rainforest Research Centre, Cairns, QLD.

Devlin, Michelle, Bricker, Suzanne, and Painting, Suzanne (2011) Comparison of five methods for assessing impacts of nutrient enrichment using estuarine case studies. Biogeochemistry, 106 (2). pp. 177-205.

Devlin, Michelle (2011) Flooding in NE Australia: how ongoing monitoring of flood plumes helps in managing the Great Barrier Reef. Marine Ecosystems and Management, 4 (4). p. 7.

Davis, A.M., Pearson, R.G., Pusey, B.J., Perna, C., Morgan, D.L., and Burrows, D. (2011) Trophic ecology of northern Australia's terapontids: ontogenetic dietary shifts and feeding classification. Journal of Fish Biology, 78 (1). pp. 265-286.

Dowe, John L., and Jones, David L. (2011) Arecaceae. In: Wilson, Annette, (ed.) Flora of Australia. Flora of Australia Series, 39 . Australian Biological Resources Study/CSIRO, Melbourne, VIC, Australia, pp. 145-210.

Douglas, Michael, Jackson, Sue, Setterfield, Samantha, Pusey, Brad, Davies, Peter, Kennard, Mark, Burrows, Damien, and Bunn, Stuart (2011) Northern futures: threats and opportunities for freshwater ecosystems. In: Pusey, B.J., (ed.) Aquatic Biodiversity in Northern Australia: Patterns, Threats and Future. CDU Press, Darwin, NT, pp. 203-220.

Davis, A.M., and Pusey, B.J. (2010) Trophic polymorphism and water clarity in northern Australian Scortum (Pisces: Terapontidae). Ecology of Freshwater Fish, 19 (4). pp. 638-643.

Doupe, R.G., and Knott, M.J. (2010) Rapid digestion of fish prey by the highly invasive ‘detritivore’ Oreochromis mossambicus. Journal of Fish Biology, 76 (4). pp. 1019-1024.

Davis, A.M., Pusey, B.J., Thorburn, D.C ., Dowe, J.L., Morgan, D.L., and Burrows, D. (2010) Riparian contributions to the diet of terapontid grunters (Pisces: Terapontidae) in wet–dry tropical rivers. Journal of Fish Biology, 76 (4). pp. 862-879.

Doupe, Robert G., Mitchell, Jim, Knott, Matthew J., Davis, Aaron M., and Lymbery, Alan J. (2010) Efficacy of exclusion fencing to protect ephemeral floodplain lagoon habitats from feral pigs (Sus scrofa). Wetlands Ecology and Management, 18 (1). pp. 69-78.

Doupe, Robert G., Knott, Matthew J., Schaffer, Jason, Burrows, Damien W., and Lymbery, Alan J. (2010) Experimental herbivory of native Australian macrophytes by the introduced Mozambique tilapia Oreochromis mossambicus. Austral Ecology, 35 (1). pp. 24-30.

Dowe, John (2010) Australian Palms: Biogeography, Ecology and Systematics. CSIRO Publishing, Collingwood, Victoria, Australia.

Devlin, Michelle, Barry, Jon, Painting, Suzanne, and Best, Mike (2009) Extending the phytoplankton tool kit for the UK Water Framework Directive: indicators of phytoplankton community structure. Hydrobiologia, 633 (1). pp. 151-168.

Doupé, Robert G., Schaffer, Jason, Knott, Matthew J., and Burrows, Damien W. (2009) How might an exotic fish disrupt spawning success in a sympatric native species? Marine and Freshwater Research, 60 (5). pp. 379-383.

Devlin, M.J., Barry, J., Mills, D.K., Gowen, R.J., Foden, J., Sivyer, D., Greenwood, N., Pearce, D., and Tett, P. (2009) Estimating the diffuse attenuation coefficient from optically active constituents in UK marine waters. Estuarine, Coastal and Shelf Science , 82 (1). pp. 73-83.

Dowe, John Leslie (2009) A preliminary note on the impact of Cyclone Larry on populations of Archontophoenix alexandrae (Arecaceae), north Queensland, Australia. Palms & Cycads, 102. pp. 4-8.

Dowe, John Leslie (2009) Archontophoenix (Arecaceae) description of species and notes. The Palm Journal, 192. pp. 4-11.

Davis, Aaron M., and Perna, Colton (2009) Evidence for predation on terrestrial Cane Toads Bufo marinus by the Sooty Grunter Hephaestus fuliginosus in northern Australia. Northern Territory Naturalist, 21. pp. 45-48.

Doupé, R.G., Knott, M.J., Schaffer, J., and Burrows, D.W. (2009) Investigational piscivory of some juvenile Australian freshwater fishes by the introduced Mozambique tilapia Oreochromis mossambicus. Journal of Fish Biology, 74 (10). pp. 2386-2400.

Devlin, Michelle, and Schaffelke, Britta (2009) Spatial extent of riverine flood plumes and exposure of marine ecosystems in the Tully coastal region, Great Barrier Reef. Marine and Freshwater Research, 60 (11). pp. 1109-1122.

Doupe, Robert G., Schaffer, Jason, Knott, Matthew J., and Dicky, Paul W. (2009) A description of freshwater turtle habitat destruction by feral pigs in tropical north eastern Australia. Herpetological Conservation and Biology, 4 (3). pp. 331-339.

Dowe, J.L. (2009) A taxonomic account of Livistona R.Br. (Arecaceae). Garden's Bulletin Singapore, 60 (2). pp. 185-344.

Doupè, Robert G., Schaffer, Jason, and Knott, Matthew J. (2008) An Example of Freshwater Turtle Habitat Destruction by Foraging Feral Pigs in Tropical North-Eastern Australia. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Devlin, M.J., Barry, J., Mills, D.K., Gowen, R.J., Foden, J., Sivyer, D., and Tett, P. (2008) Relationships between suspended particulate material, light attenuation and Secchi depth in UK marine waters. Estuarine, Coastal and Shelf Science , 79 (3). pp. 429-439.

Dowe, John Leslie (2008) Botanical Inventory of the Mungalla Coastal Habitats. Report. James Cook University, Townsville, QLD, Australia.

Davis, Aaron, Lewis, Stephen, Bainbridge, Zoe, Brodie, Jon, and Shannon , Evan (2008) Pesticide residues in waterways of the lower Burdekin region: challenges in ecotoxicological interpretation of monitoring data. Australasian Journal of Ecotoxicology, 14. pp. 89-108.

Dowe, John Leslie, and Broughton, Alan D. (2008) F.M. Bailey's taxonomy of A. Meston's collections from the Bellenden Ker Expedition of 1904. Austrobaileya, 7. pp. 675-677.

Duke, N.C., and Larkum, A.W.D. (2008) Mangroves and seagrasses. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: Biology, Environment and Management. CSIRO Publishing, Collingwood, VIC, pp. 156-170.

Doupe, Robert G., and Burrows, Damien W. (2008) Thirty years later, should we be more concerned for the ongoing invasion of Mozambique Tilapia in Australia? Pacific Conservation Biology, 14 (4). pp. 235-238.

Dowe, John Leslie, and Broughton, Alan D. (2007) F.M. Bailey's ascent of Mt Bellenden-Ker in 1889, and notes on the publication priority of new vascular plant species from the expedition. Austrobaileya, 7 (3). pp. 555-566.

Davis, Aaron (2007) Overview of research and environmental issues relevant to development of recommended farming practices for sugar cane farming in the Lower Burdekin region. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Dowe, John Leslie (2007) Ptychosperma macarthurii: discovery, horticulture and taxonomy. Palms, 51 (2). pp. 85-96.

Dixon, Ian, Douglas, Michael, Dowe, John, and Burrows, Damien (2006) Tropical rapid appraisal of riparian condition Version 1 (for use in tropical savannas). UNSPECIFIED. Land and Water Australia, Canberra, Australia.

Duke, Norman (2006) Australia's Mangroves: an authoritative guide to Australia’s mangrove plants. University of Queensland and Norman C. Duke, Brisbane, QLD, Australia.

Dowe, John Leslie, and Chapin, Melany H. (2006) Beccari's "Grande Nouveauté": the discovery, taxonomic history and typification of Pelagodoxa henryana. Palms, 50 (4). pp. 185-192.

Dowe, John Leslie (2005) Observations of palms made by the botanist and explorer Ludwig Leichhardt, during the Australian Overland Expedition of 1844-1845. Palms, 49 (4). pp. 167-182.

Dixon, Ian, Douglas, Michael, Dowe, John, Burrows, Damien, and Townsend, Simon (2005) A rapid method for assessing the condition of riparian zones in the wet/dry tropics of northern Australia. In: Proceedings of the 4th Australian Stream Management Conference. pp. 173-178. From: The 4th Australian Stream Management Conference, 19-22 October 2004, Launceston, TAS, Australia.

Dowe, John Leslie (2005) Ludwig Leichhardt's Australian plant collections, 1842-1847. Austrobaileya, 7 (1). pp. 151-163.

Devlin, M.J., and Brodie, J. (2005) Terrestrial discharge into the Great Barrier Reef Lagoon: nutrient behavior in coastal waters. Marine Pollution Bulletin, 51 (1). pp. 9-22.

Dowe, John L., and Mogea, Johanis P. (2004) New species of Livistona (Arecaceae) from New Guinea. Palms, 48 (4). pp. 197-203.

Dowe, John Leslie (2004) Taxonomic notes on palms (Arecaceae) in catalogues of the Brisbane Botanic Garden, Australia, of 1875 and 1885. Austrobaileya, 6 (4). pp. 967-972.

Devlin, Michelle, Brodie, Jon, Waterhouse, Jane, Mitchell, Alan , Audas, Donna, and Haynes, David (2003) Exposure of Great Barrier Reef inner-shelf reefs to river-borne contaminants. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.

Doupé, R.G., and Pettit, N.E. (2002) Ecological perspectives on regulation and water allocation for the Ord River, Western Australia. River Research and Applications: an international journal devoted to river research and management, 18 (3). pp. 307-320.

Dowe, John L., and Barfod, Anders S. (2001) New species of Livistona R. Br. (Arecaceae) from north Queensland and Papua New Guinea. Austrobaileya, 6 (1). pp. 165-174.

Devlin, Michelle, Waterhouse, Jane, Taylor, Jeremy, and Brodie, Jon (2001) Flood plumes in the Great Barrier Reef : spatial and temporal patterns in composition and distribution. Report. Great Barrier Reef Marine Park Authority, Townsville, Australia.

Duke, Norman (2001) Mangrove phenologies and the factors influencing them in the Australasian region. In: De Lacerda, Luiz-Drude, (ed.) Mangrove Ecosystems: Function and Management. Environmental Science . Springer-Verlag, Berlin, Germany, pp. 217-233.

Duke, Norman, and Wolanski, Eric (2001) Muddy coastal waters and depleted mangrove coastlines - depleted seagrass and coral reefs. In: Wolanski, Eric, (ed.) Oceanographic Processes of Coral Reefs: physical and biology links in the Great Barrier Reef. CRC Press, Washington, DC, USA, pp. 77-91.

Dixon, Dale (2000) Flora and fauna survey of the vegetation and faunal habitats adjacent to the Mackay-Bucasia Road. Report. James Cook University, Townsville, QLD, Australia.

Duke, Norman (1997) Mangroves in the Great Barrier Reef World Heritage Area: current status, long-term trends, management implications and research. In: Wachenfeld, David, Oliver, Jamie, and Davis, Kim, (eds.) State of the Great Barrier Reef World Heritage Area Workshop. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia, pp. 288-299.

Duke, Norman (1996) Mangrove reforestation in Panama: an evaluation of planting in areas deforested by a large oil spill. In: Field, Colin D., (ed.) Restoration of mangrove ecosystems. International Society for Mangrove Ecosystems ISME & International Tropical Timber Organization ITTO, Okinawa, Japan, pp. 209-232.

Duke, N.C. (1990) Phenological trends with latitude in the mangrove tree Avicennia marina. Journal of Ecology, 78 (1). pp. 113-133.

Duke, N.C., and Bunt, J.S. (1979) The genus Rhizophora (Rhizophoraceae) in north-eastern Australia. Australian Journal of Botany, 27 (5). pp. 657-678.

Devlin, Michelle (2005) Spatial and temporal patterns of flood plumes in the Great Barrier Reef, Australia. PhD thesis, James Cook University.

E

Espinoza-rodriguez, Ninive, Pernia, Yumara, Severeyn, Hector, Garcia de Severeyn, Yajaira, and Barrios-Garrido, Hector (2021) Echinoderms from the Gulf of Venezuela, north-western coast of Venezuela. Papéis Avulsos de Zoologia, 61. e20216151.

Elisa, Manase, Kihwele, Emilian, Wolanski, Eric, and Birkett, Charon (2021) Managing wetlands to solve the water crisis in the Katuma River ecosystem, Tanzania. Ecohydrology and Hydrobiology, 21 (2). pp. 211-222.

Ebner, Brendan C., Donaldson, James A., Murphy, Helen, Thuesen, Paul, Ford, Andrew, Schaffer, Jason, and Keith, Philippe (2021) Waterfalls mediate the longitudinal distribution of diadromous predatory fishes structuring communities in tropical, short, steep coastal streams. Freshwater Biology, 66 (6). pp. 1225-1241.

Ebner, Brendan C. (2021) Yellowfin bream, Acanthopagrus australis, reorientate individual shells in search of prey. Food Webs, 29. e00216.

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Koch, Evamaria W., Barbier, Edward B., Silliman, Brian R., Reed, Denise J., Perillo, Gerardo M.E., Hacker, Sally D., Granek, Elise F., Primavera, Jurgenne H., Muthiga, Nyawira, Polasky, Stephen, Halpern, Benjamin S., Kennedy, Christopher J., Kappel, Carrie V., and Wolanski, Eric (2009) Non-linearity in ecosystem services: temporal and spatial variability in coastal protection. Frontiers in Ecology and the Environment, 7 (1). pp. 29-37.

Kroon, F.J., and Brodie, J. (2009) Catchment management and health of coastal ecosystems: synthesis and future research. Marine and Freshwater Research, 60 (11). pp. 1196-1200.

Kiwango, Yustina Andrew, and Wolanski, Eric (2008) Papyrus wetlands, nutrients balance, fisheries collapse, food security, and Lake Victoria level decline in 2000–2006. Wetlands Ecology and Management, 16 (2). pp. 89-96.

Kingsford, M.J., and Wolanski, E. (2008) Oceanography. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 28-39.

Kutt, Alex, and Schulz, Martin (2000) Distribution and habitat of the flute-nosed bat Murina florium (Chiroptera: Vespertilionidae) in the wet tropics of north-eastern Queensland. Australian Zoologist, 31 (3). pp. 458-467.

Kutt, A., and Burrows, D. (1999) Cairns International Airport fauna surveys. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A.S. (1999) High frequency modernization project Speed Creek Receive Station: additional flora survey. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A.S. (1999) Vertebrate fauna survey of the Desert Uplands Bioregion: interim final report(data). Report. James Cook University, Townsville, QLD, Australia.

Kutt, A., and Kemp, J. (1998) Flora and fauna survey of the Inkerman and Molongle blocks, Burdekin River irrigation area, right bank. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A., and Kemp, J. (1998) Reconnaissance flora and fauna survey of three areas near Bowen associated with the proposed Elliot Main Channel extension. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A. (1998) Survey for northern hopping-mouse (Notomys aquilo) and marine turtle nesting at the proposed Cable Beach landfall, PNG gas project. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A. (1997) Billwon Weir and Tinaroo Stage II impact assessment study: terrestrial fauna. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A., and Burnett, S. (1997) Papua New Guinea to Queensland gas project: vertebrate fauna survey and review, Townsville to Gladstone. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A.S. (1996) Chalumbin-Woree 275kv transmission line: flora and fauna assessment of Crowleys Creek, Cairns. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A.S. (1996) Great Palm Island proposed Francis Creek dam. Draft environmental impact statement: supplementary fauna survey. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A. (1996) High frequency modernisation project: flora and fauna assessment. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A., Burrows, D., and Cummings, R. (1996) Pandora onshore gas pipeline flora and fauna studies: Palmer River to Townsville. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A.S. (1996) Ross Island development, Townsville, baseline studies: an investigation of the mixed flying fox camp and ibis colony, potential impacts and recommendations for monitoring. Report. James Cook University, Townsville, QLD, Australia.

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Lambert, Victoria, Bainbridge, Zoe T., Collier, Catherine, Lewis, Stephen E., Adams, Matthew P., Carter, Alex, Saunders, Megan I., Brodie, Jon, Turner, Ryan D.R., Rasheed, Michael A., and O'Brien, Katherine R. (2021) Connecting targets for catchment sediment loads to ecological outcomes for seagrass using multiple lines of evidence. Marine Pollution Bulletin, 169. 112494.

Lewis, Stephen E., Bartley, Rebecca, Wilkinson, Scott, Bainbridge, Zoe T., Kinsey-Henderson, Anne, James, Cassandra S., Irvine, Scott A., and Brodie, Jon E. (2021) Land use change in the river basins of the Great Barrier Reef, 1860 to 2019: a foundation for understanding environmental history across the catchment to reef continuum. Marine Pollution Bulletin, 166. p. 112193.

Le Feuvre, Matthew C., Dempster, Timothy, Shelley, James J., Davis, Aaron M., and Swearer, Stephen E. (2021) Range restriction leads to narrower ecological niches and greater extinction risk in Australian freshwater fish. Biodiversity and Conservation, 30 (11). pp. 2955-2976.

Lintermans, Mark, Geyle, Hayley M., Beatty, Stephen, Brown, Culum, Ebner, Brendan C., Freeman, Rob, Hammer, Michael P., Humphreys, William F., Kennard, Mark J., Kern, Pippa, Martin, Keith, Morgan, David L., Raadik, Tarmo A., Unmack, Peter J., Wager, Rob, Woinarski, John C.Z., and Garnett, Stephen T. (2020) Big trouble for little fish: identifying Australian freshwater fishes in imminent risk of extinction. Pacific Conservation Biology, 26 (4). pp. 365-377.

Lambert, V., Collier, C., Brodie, J., Adams, M.P., Baird, M., Bainbridge, Z., Carter, A., Lewis, S., Rasheed, M., Saunders, M., and O'Brien, K. (2020) Connecting Sediment Load Targets to Ecological Outcomes for Seagrass. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Leo, Kelly L., Gillies, Chris L., Fitzsimons, James A., Hale, Lynne Z., and Beck, Michael W. (2019) Coastal habitat squeeze: a review of adaptation solutions for saltmarsh, mangrove and beach habitats. Ocean and Coastal Management, 175. pp. 180-190.

Lear, Karissa O., Gleiss, Adrian C., Whitty, Jeff M., Fazeldean, Travis, Albert, J.R., Green, Nathan, Ebner, Brendan C., Thorburn, Dean C., Beatty, Stephen J., and Morgan, David L. (2019) Recruitment of a critically endangered sawfish into a riverine nursery depends on natural flow regimes. Scientific Reports, 9. 17071.

Lambert, V., Adams, M.P., Collier, C., Carter, A., Saunders, M., Brodie, J., Bainbridge, Z., Rasheed, M., Turner, R., and O'Brien, K.R. (2019) Towards ecologically relevant targets: impact of flow and sediment discharge on seagrass communities in the Great Barrier Reef. In: Proceedings of the 22nd International Congress on Modelling and Simulation. pp. 624-630. From: 23rd International Congress on Modelling and Simulation, 1-6 December 2019, Canberra, ACT, Australia.

Le Port, Agnes, Bakker, Judith, Cooper, Madalyn K., Huerlimann, Roger, and Mariani, Stefano (2018) Environmental DNA (eDNA): a valuable tool for ecological inference and management of sharks and their relatives. In: Carrier, Jeffrey C., Heithaus, Michael R., and Simpfendorfer, Colin A., (eds.) Shark Research: emerging technologies and applications for the field and laboratory. Marine Biology Series . CRC Press, Boca Raton, FL, USA, pp. 255-283.

Li, Yanfang, Wolanski, Eric, Dai, Zhenfei, Lambrechts, Jonathan, Tang, Cheng, and Zhang, Hua (2018) Trapping of plastics in semi-enclosed seas: insights from the Bohai Sea, China. Marine Pollution Bulletin, 137. pp. 509-517.

Lewis, Stephen E., Lough, Janice M., Cantin, Neal E., Matson, Eric G., Kinsley, Les, Bainbridge, Zoe T., and Brodie, Jon E. (2018) A critical evaluation of coral Ba/Ca, Mn/Ca and Y/Ca ratios as indicators of terrestrial input: new data from the Great Barrier Reef, Australia. Geochimica et Cosmochimica Acta, 237. pp. 131-154.

Li, Yanfang, Martins, Flavio, and Wolanski, Eric (2017) Sensitivity analysis of the physical dynamics of the Fly River plume in Torres Strait. Estuarine, Coastal and Shelf Science, 194. pp. 84-91.

Le Port, A., Montgomery, J.C., Smith, A.N.H., Croucher, A.E., McLeod, I.M., and Lavery, S.D. (2017) Temperate marine protected area provides recruitment subsidies to local fisheries. Proceedings of the Royal Society of London Series B, Biological Sciences, 284 (1865). 20171300.

Li, Xinnian, Duke, Norman C., Yang, Yuchen, Huang, Lishi, Zhu, Yuxiang, Zhang, Zhang, Zhou, Renchao, Zhong, Cairong, Huang, Yelin, and Sia, Suhua (2016) Re-evaluation of phylogenetic relationships among species of the mangrove genus Avicennia from Indo-West Pacific based on multilocus analyses. PLoS ONE, 11 (10). e0164453. pp. 1-14.

Lewis, Stephen E., Silburn, D. Mark, Kookana, Rai S., and Shaw, Melanie (2016) Pesticide behavior, fate, and effects in the Tropics: an overview of the current state of knowledge. Journal of Agricultural and Food Chemistry, 64 (20). pp. 3917-3924.

Lamb, Joleah B., Wenger, Amelia S., Devlin, Michelle J., Ceccarelli, Daniela M., Williamson, David H., and Willis, Bette L. (2016) Reserves as tools for alleviating impacts of marine disease. Philosophical Transactions of the Royal Society B: Biological Sciences, 371 (1689). pp. 1-11.

Le Port, A., Roycroft, E.J., Thakur, V., and Lavery, S.D. (2016) Characterisation of eleven new polymorphic microsatellite markers for the coastal stingray Dasyatis brevicaudata (Dasyatidae Hutton 1875), and cross-amplification in seven dasyatid species. Biochemical Systematics and Ecology, 65. pp. 234-237.

Leitão, Rafael P., Zuanon, Jansen, Villeger, Sebastien, Williams, Stephen E., Baraloto, Christopher, Fortunel, Claire, Mendonça, Fernando P., and Mouillot, David (2016) Rare species contribute disproportionately to the functional structure of species assemblages. Proceedings of the Royal Society of London Series B, Biological Sciences, 283 (1828). pp. 1-9.

Lewis, Stephen E., Wüst, Raphael A.J., Webster, Jody, M., Collins, John, Wright, Shelley, A., and Jacobsen, Geraldine (2015) Rapid relative sea-level fall along north-eastern Australia between 1200 and 800 cal. yr BP: an appraisal of the oyster evidence. Marine Geology, 370. pp. 20-30.

Lough, J.M., Lewis, S.E., and Cantin, N.E. (2015) Freshwater impacts in the central Great Barrier Reef: 1648–2011. Coral Reefs, 34 (3). pp. 739-751.

Lawes, Michael J., Fisher, Diana O., Johnson, Chris N., Blomberg, Simon P., Frank, Anke S.K., Fritz, Susanne A., McCallum, Hamish, VanDerWal, Jeremy, Abbott, Brett N., Legge, Sarah, Letnic, Mike, Thomas, Colette R., Thurgate, Nikki, Fisher, Alaric, Gordon, Iain J., and Kutt, Alex (2015) Correlates of recent declines of rodents in Northern and Southern Australia: habitat structure is critical. PLoS ONE, 10 (6). e0130626. pp. 1-17.

Lyons, B.P. , Barber, J.L., Rumney, H.S., Bolam, T.P.C., Bersuder, P., Law, R.J., Mason, C., Smith, A.J., Morris, S., Devlin, M.J., Al-Enezi, M., Massoud, M.S., Al-Zaidan, A.S., and Al-Sarawi, H.A. (2015) Baseline survey of marine sediments collected from the State of Kuwait: PAHs, PCBs, brominated flame retardants and metal contamination. Marine Pollution Bulletin, 100 (2). pp. 629-636.

Lyons, B.P., Devlin, M.J., Abdul Hamid, S.A., Al-Otiabi, A.F. , Al-Enezi, M., Massoud, M.S., Al-Zaidan, A.S., Smith, A.J., Morris, S., Bersuder, P., Barber, J.L., Papachlimitzou, A., and Al-Sarawi, H.A. (2015) Microbial water quality and sedimentary faecal sterols as markers of sewage contamination in Kuwait. Marine Pollution Bulletin, 100 (2). pp. 689-698.

Lo, Eugenia Y.Y., Duke, Norman C., and Sun, Mei (2014) Phylogeographic pattern of Rhizophora (Rhizophoraceae) reveals the importance of both vicariance and long-distance oceanic dispersal to modern mangrove distribution. BMC Evolutionary Biology, 14. 83. pp. 1-15.

Lewis, Stephen E., Olley, Jon, Furuichi, Takahisa, Sharma, Ashneel, and Burton, Joanne (2014) Complex sediment deposition history on a wide continental shelf: implications for the calculation of accumulation rates on the Great Barrier Reef. Earth and Planetary Science Letters, 393 (1). pp. 146-158.

Lough, J.M., Llewellyn, L.E., Lewis, S.E., Turney, C.S.M., Palmer, J.G., Cook, C.G., and Hogg, A.G. (2014) Evidence for suppressed mid-Holocene northeastern Australian monsoon variability from coral luminescence. Paleoceanography, 29 (6). pp. 581-594.

Lewis, Stephen E., Sloss, Craig R., Murray-Wallace, Colin V., Woodroffe, Colin D., and Smithers, Scott G. (2013) Post-glacial sea-level changes around the Australian margin: a review. Quaternary Science Reviews, 74. pp. 115-138.

Lewis, Stephen E., Bainbridge, Zöe T., Kuhnert, Petra M., Sherman, Bradford S., Henderson, Brent, Dougall, Cameron, Cooper, Michelle, and Brodie, Jon E. (2013) Calculating sediment trapping efficiencies for reservoirs in tropical settings: a case study from the Burdekin Falls Dam, NE Australia. Water Resources Research, 49 (2). pp. 1017-1029.

Lewis, Stephen E., Wust, Raphael A.J., Webster, Jody M., Shields, Graham A., Renema, Willem, Lough, Janice M., and Jacobsen, Geraldine (2012) Development of an inshore fringing coral reef using textural, compositional and stratigraphic data from Magnetic Island, Great Barrier Reef, Australia. Marine Geology, 299-302. pp. 18-32.

Lewis, Stephen E., Schaffelke, Britta, Shaw, Melanie, Bainbridge, Zoë T., Rohde, Ken W., Kennedy, Karen, Davis, Aaron M., Masters, Bronwyn L., Devlin, Michelle J., Mueller, Jochen F., and Brodie, Jon E. (2012) Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef. Marine Pollution Bulletin, 65 (4-9). pp. 280-291.

Lewis, S.E., Brodie, J.E., McCulloch, M.T., Mallella, J., Jupiter, S.D., Williams, H. Stuart, Lough, J.M., and Matson, E.G. (2012) An assessment of an environmental gradient using coral geochemical records, Whitsunday Islands, Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 306-319.

Lewis, S.E., Smith, R., Brodie, J.E., Bainbridge, Z.T., Davis, A.M., and Turner, R. (2011) Using monitoring data to model herbicides exported to the Great Barrier Reef, Australia. In: Proceedings of 19th International Congress on Modelling and Simulation. pp. 2051-2056. From: MODSIM 2011 19th International Congress on Modelling and Simulation, 12–16 December 2011, Perth, WA, Australia.

Lambrechts, J., Humphrey, C., McKinna, L., Gourge, O., Fabricius, K.E., Mehta, A.J., Lewis, S., and Wolanski, E. (2010) Importance of wave-induced bed liquefaction in the fine sediment budget of Cleveland Bay, Great Barrier Reef. Estuarine, Coastal and Shelf Science , 89 (2). pp. 154-162.

Lewis, Stephen Edward, Henderson, Robert A., Dickens, Gerald R., Shields - Zhou, Graham A., and Coxhell, Simon (2010) The geochemistry of primary and weathered oil shale and coquina across the Julia Creek vanadium deposit (Queensland, Australia). Mineralium Deposita, 45 (6). pp. 599-620.

Lymbery, A.J., Hassan, M., Morgan, D.L., Beatty, S.J., and Doupé, R.G. (2010) Parasites of native and exotic freshwater fishes in south-western Australia. Journal of Fish Biology, 76 (7). pp. 1770-1785.

Lukacs, George P. (2010) Building global collaboration in tropical wetland research. Wetlands Ecology and Management, 18 (5). pp. 511-515.

Lukacs, G.P., and Finlayson, C.M. (2010) An evaluation of ecological information on Australia’s northern tropical rivers and wetlands. Wetlands Ecology and Management, 18 (5). pp. 597-625.

Lewis, Stephen, Milla, Rob, Brodie, Jon, Bainbridge, Zoë, and Davis, Aaron (2009) Pesticide residues in the Great Barrier Reef. Pesticides News, 86. pp. 8-11.

Lewis, Stephen E., Brodie, Jon E., Bainbridge, Zoe T., Rohde, Ken W., Davis, Aaron M., Masters, Bronwyn L., Maughan, Mirjam, Devlin, Michelle J., Mueller, Jochen F., and Schaffelke, Britta (2009) Herbicides: a new threat to the Great Barrier Reef. Environmental Pollution, 157 (8-9). pp. 2470-2484.

Lewis, S.E., Sherman, B.S., Bainbridge, Z.T., Brodie, J.E., and Cooper, M. (2009) Modelling and monitoring the sediment trapping efficiency and sediment dynamics of the Burdekin Falls Dam, Queensland, Australia. In: Proceedings of 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation. pp. 4022-4028. From: 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 13–17 July 2009, Cairns, QLD, Australia.

Lambrechts, Jonathan, Hanert, Emmanuel, Deleersnijder, Eric, Bernard, Paul-Emile, Legat, Vincent, Remacle, Jean-Francois, and Wolanski, Eric (2008) A multi-scale model of the hydrodynamics of the whole Great Barrier Reef. Estuarine, Coastal and Shelf Science , 79 (1). pp. 143-151.

Lewis, Stephen E., Wust, Raphael A.J., Webster, Jody M., and Shields, Graham A. (2008) Mid-late Holocene sea-level variability in eastern Australia. Terra Nova, 20 (1). pp. 74-81.

Lymburner, Leo, and Burrows, Damien (2007) Prioritizing Waterbody Management in the Leichhardt Catchment: using a Landsat TM archive to characterise water permanence and water clarity. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Lankester, Allyson, and Greiner, Romy (2007) Developing appropriate incentives for improving water quality in the Burdekin River catchment. In: Proceedings of the 5th Australian Stream Management Conference. Australian Rivers: Making a Difference. From: 5th Australian Stream Management Conference: Australian Rivers: Making a Difference, 21-25 May 2007, Albury, NSW.

Lymburner, Leo, Burrows, Damien, and Butler, Barry (2007) Using remote sensing to map wetland water clarity and permanence: approaches for identifying wetlands requiring management in large catchments. In: Proceedings of the 5th Australian Stream Management Conference. Australian Rivers: Making a Difference. pp. 235-240. From: 5th Australian Stream Management Conference. Australian Rivers: Making a Difference, 21-25 May 2007, Albury, NSW.

Lewis, S.E., Bainbridge, Z.T., and Brodie, J.E. (2007) A review of load tools available for calculating pollutant exports to the Great Barrier Reef lagoon: a case study of varying catchment areas. In: Proceedings of MODSIM07: the International Congress on Modelling and Simulation. pp. 2396-2402. From: MODSIM07 International Congress on Modelling and Simulation: Land, Water & Environmental Management: Integrated Systems for Sustainability, 10-13 December 2007, Christchurch, New Zealand.

Lukacs, George (1998) Jungara CMTS flora and fauna survey. Report. James Cook University, Townsville, QLD, Australia.

Lukacs, George (1998) Riverside Gardens: creek and recirculation system. Aquatic and riparian vegetation. Report. James Cook University, Townsville, QLD, Australia.

Lukacs, G.P., and Weber, E. (1997) Seed germination requirements of four emergent macrophytes in North Queensland. Report. James Cook University, Townsville, QLD, Australia.

Lukacs, G.P. (1996) Comment on environmental issues surrounding WITF submissions - Mackay region. Report. James Cook University, Townsville, QLD, Australia.

Lukacs, G., and Skull, S. (1996) Townsville City Council regional growth options study. Conservation priorities. Report. James Cook University, Townsville, QLD, Australia.

Lukacs, G. (1996) Wetlands of the Townsville area. Report. James Cook University, Townsville, QLD, Australia.

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Mnaya, Bakari, Manase, Elisa, Kihwele, Emilian, Kiwango, Halima, Kiwango, Yustina, Ng'umbi, Gladys, and Wolanski, Eric (2021) Are Tanzanian National Parks affected by the water crisis? Findings and ecohydrology solutions. Ecohydrology and Hydrobiology, 21 (3). pp. 425-442.

McDonald, Sarah, Hassell, Kathryn, and Cresswell, Tom (2021) Effect of short-term dietary exposure on metal assimilation and metallothionein induction in the estuarine fish Pseudogobius sp. Science of the Total Environment, 772. 145042.

Mejias-Balsalobre, Carmen, Restrepo, Jamie, Borges, Gilberto, Garcia, Raul, Rojas-Cañizales, Daniela, Barrios-Garrido, Hector, and Valverde, Roldan A. (2021) Local community perceptions of sea turtle egg use in Tortuguero, Costa Rica. Ocean & Coastal Management, 201. 105423.

Morgan, David L., Lear, Karissa O., Ebner, Brendan C., and Beatty, Stephen J. (2021) Net design for selective control of the “plague minnow” Gambusia holbrooki that minimises impact on native Australian fishes. Journal of Fish Biology, 99 (6). pp. 2060-2065.

McKenzie, Len J., Yoshida, Rudi L., Aini, John W., Andrefouet, Serge, Colin, Patrick L., Cullen-unsworth, Leanne C., Hughes, Alec T., Payri, Claude E., Rota, Manibua, Shaw, Christina, Tsuda, Roy T., Vuki, Veikila C., and Unsworth, Richard K.F. (2021) Seagrass ecosystem contributions to people's quality of life in the Pacific Island Countries and Territories. Marine Pollution Bulletin, 167. 112307.

McKenzie, Len, Yoshida, Rudi L., Aini, John W., Andrefouet, Serge, Colin, Patrick L., Cullen-unsworth, Leanne C., Hughes, Alec T., Payri, Claude E., Rota, Manibua, Shaw, Christina, Skelton, Posa A., Tsuda, Roy T., Vuki, Veikila C., and Unsworth, Richard K.F. (2021) Seagrass ecosystems of the Pacific Island countries and territories: a global bright spot. Marine Pollution Bulletin, 167. 112308.

Moran, Lisandro, Rincon, Jose Ely, Sibira, Luis, Ortega, Maria G., and Barrios-Garrido, Hector (2020) Nuevos registros del camarón tigre Penaeus monodon Fabricius, 1798 (Decapoda: Penaeidae) en el Sistema del Lago de Maracaibo, Venezuela [New records of Giant Tiger Prawn, Penaeus monodon Fabricius, 1798 (Decapoda: Panaeidae) in the Maracaibo Lake System, Venezuela]. Ecotrópicos, 32. e0015.

McLeod, Ian M., Bourne, David, Ceccarelli, Daniela M., Boström-Einarsson, Lisa, Cook, Nathan, Fulton, Stella E., Hancock, Boze, Harrison, Peter, Hein, Margaux, Le Port, Agnès, Paewai-Higgins, Roma, Smith, Hillary A., and Smith, Adam (2020) Best practice coral restoration for the Great Barrier Reef. Report. Reef and Rainforest Research Centre Limited (RRRC), Cairns, QLD, Australia.

McLeod, Ian, and Newlands, Maxine (2020) Coral restoration in a warming world. The Marine Biologist, 14 (April). pp. 26-29.

Morrissey, Scott J., Schlaefer, Jodie A., and Kingsford, Michael J. (2020) Experimental validation of the relationships between cubozoan statolith elemental chemistry and salinity and temperature. Journal of Experimental Marine Biology and Ecology, 527. 151375.

McLeod, I.M., Bostrom Einarsson, L., Creighton, C., D'Anastasi, B., Diggles, B., Dwyer, P.G., Firby, L., Le Port, A., Luongo, A., Martinez-Baena, F., McOrrie, S., Heller-Wagner, G., and Gillies, C.L (2020) Habitat value of Sydney rock oyster (Saccostrea glomerata) reefs on soft sediments. Marine and Freshwater Research, 71 (7). pp. 771-781.

McLeod, Ian M., Heller-Wagner, Gideon, Gillies, Chris, Boström-Einarsson, Lisa, and Dwyer, Patrick G. (2020) Hitching a ride on Hercules: fatal epibiosis drives ecosystem change from mud banks to oyster reefs. Ecology, 101 (6). e03032.

McKenzie, Len J., and Yoshida, Rudi L. (2020) Over a decade monitoring Fiji's seagrass condition demonstrates resilience to anthropogenic pressures and extreme climate events. Marine Pollution Bulletin, 160. 111636.

McKenna, Skye, Chartrand, Katie, van de Wetering, Chris, Wells, Jaclyn, Carter, Alexandra, and Rasheed, Michael (2020) Port of Townsville Seagrass Monitoring Program: 2019. Report. James Cook University, Cairns, QLD, Australia.

McKenzie, Len J, Nordlund, Lina M., Jones, Benjamin L., Cullen-Unsworth, Leanne C., Roelfsema, Chris, and Unsworth, Richard K.F. (2020) The global distribution of seagrass meadows. Environmental Research Letters, 15 (7). 074041.

McAfee, Dominic, McLeod, Ian M., Bostrom-Einarsson, Lisa, and Gillies, Chris L. (2020) The value and opportunity of restoring Australia's lost rock oyster reefs. Restoration Ecology, 28. 2. pp. 304-314.

McLeod, Ian M., Williamson, David H., Taylor, Sascha, Srinivasan, Maya, Read, Mark, Boxer, Craig, Mattocks, Neil, and Ceccarelli, Daniela M. (2019) Bommies away! Logistics and early effects of repositioning 400 tonnes of displaced coral colonies following cyclone impacts on the Great Barrier Reef. Ecological Management and Restoration, 20 (3). pp. 262-265.

McLeod, Ian Michael, zu Ermgassen, Philine S.E., Gillies, Chris L., Hancock, Boze, and Humphries, Austin (2019) Can bivalve babitat restoration improve degraded estuaries? In: Wolanski, Eric, Day, John W., Elliott, Michael, and Ramachandran, Ramesh, (eds.) Coasts and Estuaries: the future. Elsevier, Oxford, UK, pp. 427-442.

McLeod, I. M., Newlands, M., Hein, M., Boström-Einarsson, L., Banaszak, A., Grimsditch, G., Mohammed, A., Mead, D., Pioch, S., Thornton, H., Shaver, E., Souter, D., and Staub, F. (2019) Mapping current and future priorities for coral restoration and adaptation programs. Report. International Coral Reef Initiative, Townsville, QLD, Australia.

McKnight, Donald T., Huerlimann, Roger, Bower, Deborah S., Schwarzkopf, Lin, Alford, Ross A., and Zenger, Kyall R. (2019) Methods for normalizing microbiome data: an ecological perspective. Methods in Ecology and Evolution, 10 (3). pp. 389-400.

McLeod, Ian (2019) Successful communication for shellfish reef restoration projects. In: Fitzsimons, James, Branigan, Simon, Brumbaugh, Robert D., McDonald, Tein, and zu Ermgassen, Philine S.E., (eds.) Restoration Guidelines for Shellfish Reefs. The Nature Conservancy, Arlington, VA, USA, pp. 69-72.

Matley, Jordan K., Maes, Gregory E., Devloo-Delva, Floriaan, Huerlimann, Roger, Chua, Gladys, Tobin, Andrew J., Fisk, Aaron T., Simpfendorfer, Colin A., and Heupel, Michelle R. (2018) Integrating complementary methods to improve diet analysis in fishery‐targeted species. Ecology and Evolution, 8 (18). pp. 9503-9515.

McLeod, Ian, Schmider, Joann, Creighton, Colin, and Gillies, Chris (2018) Seven pearls of wisdom: Advice from Traditional Owners to improve engagement of local Indigenous people in shellfish ecosystem restoration. Ecological Management and Restoration, 19 (2). pp. 98-101.

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