Publications by: TropWater

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Clarke, David A., York, Paul H., Rasheed, Michael A., and Northfield, Tobin D. (2017) Does biodiversity–ecosystem function literature neglect tropical ecosystems? Trends in Ecology & Evolution. pp. 1-3. (In Press)

James, Cassandra S., Reside, April E., VanDerWal, Jeremy , Pearson, Richard G., Burrows, Damien, Capon, Samatha J., Harwood, Thomas D. , Hodgson, Lauren, and Waltham, Nathan J. (2017) Sink or swim? potential for high faunal turnover in Australian rivers under climate change. Journal of Biogeography. pp. 1-13. (In Press)

Wolanski, Eric (2016) Bounded and unbounded boundaries – untangling mechanisms for estuarine-marine ecological connectivity: scales of m to 10,000 km – a review. Estuarine, Coastal and Shelf Science . (In Press)

Salmo III, Severino G., Tibbetts, Ian, and Duke, Norman C. (2016) Colonization and shift of mollusc assemblages as a restoration indicator in planted mangroves in the Philippines. Biodiversity and Conservation. pp. 1-17. (In Press)

York, Paul H., Smith, Timothy M., Coles, Rob G., McKenna, Skye A., Connolly, Rod M., Irving, Andrew D., Jackson, Emma L., McMahon, Kathryn, Runcie, John W., Sherman, Craig D.H., Sullivan, Brooke K., Trevathan-Tackett, Stacy M., Brodersen, Kasper E., Carter, Alex B., Ewers, Carolyn J., Lavery, Paul S., Roelfsema, Chris M., Sinclair, Elizabeth A., Strydom, Simone, Tanner, Jason E., van Dijk, Kor-jent, Warry, Fiona Y., Waycott, Michelle, and Whitehead, Sam (2016) Identifying knowledge gaps in seagrass research and management: an Australian perspective. Marine Environmental Research. (In Press)

McLeod, Ian M., Jones, Rhondda E., Jones, Geoffrey P., Takahashi, Miwa, and McCormick, Mark I. (2016) Interannual variation in the larval development of a coral reef fish in response to temperature and associated environmental factors. Marine Biology. (In Press)

Brodie, Jon E., Lewis, Stephen E., Collier, Catherine J., Wooldridge, Scott, Bainbridge, Zoe, Waterhouse, Jane, Rasheed, Michael, Honchin, Carol, Holmes, Glen, and Fabricius, Katharina (2016) Setting ecologically relevant targets for river pollutant loads to meet marine water quality requirements for the Great Barrier Reef, Australia: a preliminary methodology and analysis. Ocean & Coastal Management. pp. 1-12. (In Press)

Cooper, Michelle, Lewis, Stephen E., and Smithers, Scott G. (2016) Spatial and temporal dynamics of suspended sediment causing persistent turbidity in a large reservoir: Lake Dalrymple, Queensland, Australia. Marine and Freshwater Research. pp. 1-14. (In Press)

Wallace, Jim, Waltham, Nathan, and Burrows, Damien (2016) A comparison of temperature regimes in dry-season waterholes in the Flinders and Gilbert catchments in northern Australia. Marine and Freshwater Research. pp. 1-18. (In Press)

Adams, Matthew P., Collier, Catherine J., Uthicke, Sven, Ow, Yan X., Langlois, Lucas, and O'brien, Katherine R. (2017) Model fit versus biological relevance: evaluating photosynthesis-temperature models for three tropical seagrass species. Scientific Reports, 7. pp. 1-12.

Rodellas, Valentí, Garcia-Orellana, Jordi, Trezzi, Giada, Masqué, Pere, Stieglitz, Thomas C., Bokuniewicz, Henry, Cochran, J. Kirk, and Berdalet, Elisa (2017) Using the radium quartet to quantify submarine groundwater discharge and porewater exchange. Geochimica et Cosmochimica Acta, 196. pp. 58-73.

Wegscheidl, Carla J., Sheaves, Marcus, McLeod, Ian M., Hedge, Paul T., Gillies, Chris L., and Creighton, Colin (2017) Sustainable management of Australia's coastal seascapes: a case for collecting and communicating quantitative evidence to inform decision-making. Wetlands Ecology and Management, 25 (1). pp. 3-22.

Teodosio, Maria Alexandra, Paris, Claire B., Wolanski, Eric, and Morais, Pedro (2016) Biophysical processes leading to the ingress of temperate fish larvae into estuarine nursery areas: a review. Estuarine, Coastal and Shelf Science , 183 (Part A). pp. 187-202.

Aschenbroich, Adélaïde, Michaud, Emma, Stieglitz, Thomas, Fromard, Francois, Gardel, Antoine, Tavares, Marcos, and Thouzeau, Gérard (2016) Brachyuran crab community structure and associated sediment reworking activities in pioneer and young mangroves of French Guiana, South America. Estuarine, Coastal and Shelf Science, 182 (Part A). pp. 60-71.

Ebner, Brendan C., Morgan, David L., Kerezsy, Adam, Hardie, Scott, Beatty, Stephen J., Seymour, Jamie E., Donaldson, James A., Linke, Simon, Peverell, Stirling, Roberts, David, Espinoza, Thomas, Marshall, Nadine, Kroon, Frederieke J., Burrows, Damien W., and McAllister, Ryan R.J. (2016) Enhancing conservation of Australian freshwater ecosystems: identification of freshwater flagship fishes and relevant target audiences. Fish and Fisheries, 17 (4). pp. 1134-1151.

Li, Xinnian, Duke, Norman C., Yang, Yuchen, Huang, Lishi, Zhu, Yuxiang, Zhang, Zhang, Zhou, Renchao, Zhong, Cairong, Huang, Yelin, and Sia, Suhua (2016) Re-evaluation of phylogenetic relationships among species of the mangrove genus Avicennia from Indo-West Pacific based on multilocus analyses. PLoS ONE, 11 (10). pp. 1-14.

Rogers, Kerrylee, Boon, Paul I., Branigan, Simon, Duke, Norman C., Field, Colin D., Fitzsimons, James A., Kirkman, Hugh, Mackenzie, Jock R., and Saintilan, Neil (2016) The state of legislation and policy protecting Australia's mangrove and salt marsh and their ecosystem services. Marine Policy, 72. pp. 139-155.

Yan, Yu-Bin, Duke, Norm C., and Sun, Mei (2016) Comparative analysis of the pattern of population genetic diversity in three Indo-West Pacific Rhizophora mangrove species. Frontiers in Plant Science, 7. pp. 1-17.

Waterhouse, Jane, Brodie, Jon, Lewis, Stephen, and Audas, Donna-Marie (2016) Land-sea connectivity, ecohydrology and holistic management of the Great Barrier Reef and its catchments: time for a change. Ecohydrology and Hydrobiology, 16 (1). pp. 45-57.

Serrano, Oscar, Lavery, Paul S., Duarte, Carlos M., Kendrick, Gary A., Calafat, Antoni, York, Paul H., Steven, Andy, and Macreadie, Peter I. (2016) Can mud (silt and clay) concentration be used to predict soil organic carbon content within seagrass ecosystems? Biogeosciences, 13. pp. 4915-4926.

Wells, Jaclyn, Bryant, Catherine, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring Update: May - August 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Smith, Timothy M., York, Paul H., Macreadie, Peter I., Keough, Michael J., Ross, D. Jeff, and Sherman, Craig D.H. (2016) Spatial variation in reproductive effort of a southern Australian seagrass. Marine Environmental Research, 120. pp. 214-224.

Gladish, Daniel W., Kuhnert, Petra M., Pagendam, Daniel E., Wikle, Christopher K., Bartley, Rebecca, Searle, Ross D., Ellis, Robin J., Dougall, Cameron, Turner, Ryan D.R., Lewis, Stephen E., Bainbridge, Zoe T., and Brodie, Jon E. (2016) Spatio-temporal assimilation of modelled catchment loads with monitoring data in the Great Barrier Reef. Annals of Applied Statistics, 10 (3). pp. 1590-1618.

Farrington, John W., Burns, Kathryn A., and Leinen, Margaret S. (2016) Synthesis and crosscutting topics. Oceanography, 29 (3). pp. 204-213.

Ryan, E.J., Smithers, S.G., Lewis, S.E., Clark, T.R., and Zhao, J.X. (2016) The influence of sea level and cyclones on Holocene reef flat development: Middle Island, central Great Barrier Reef. Coral Reefs, 35 (3). pp. 805-818.

Duke, Norman C. (2016) Oil spill impacts on mangroves: recommendations for operational planning and action based on a global review. Marine Pollution Bulletin, 109 (2). pp. 700-715.

Collier, C.J., Adams, M.P., Langlois, L., Waycott, M., O'Brien, K.R., Maxwell, P.S., and McKenzie, L. (2016) Thresholds for morphological response to light reduction for four tropical seagrass species. Ecological Indicators, 67. pp. 358-366.

Chaiechi, Taha, Stoeckl, Natalie, Jarvis, Diane, Lewis, Stephen, and Brodie, Jon (2016) Assessing the impact of price changes and extreme climatic events on sediment loads in a large river catchment near the Great Barrier Reef. Australian Journal of Agricultural and Resource Economics, 60 (3). pp. 386-405.

Elliott, Michael, Mander, Lucas, Mazik, Krysia, Simenstad, Charles, Valesini, Fiona, Whitfield, Alan, and Wolanski, Eric (2016) Ecoengineering with ecohydrology: successes and failures in estuarine restoration. Estuarine, Coastal and Shelf Science , 176. pp. 12-35.

Robson, Heather L.A., Noble, Tansyn H., Saunders, Richard J., Robson, Simon K.A., Burrows, Damien W., and Jerry, Dean R. (2016) Fine-tuning for the tropics: application of eDNA technology for invasive fish detection in tropical freshwater ecosystems. Molecular Ecology, 16 (4). pp. 922-932.

Carter, Alex, Bryant, Catherine, Davies, Jaclyn, and Rasheed, Michael (2016) Gladstone Healthy Harbour Partnership 2016 Report Card: ISP011: seagrass. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

McKenzie, Len J., Yaakub, Siti Maryam, Tan, Ria, Seymour, Jamie, and Yoshida, Rudi L. (2016) Seagrass habitats of Singapore: environmental drivers and key processes. Raffles Bulletin of Zoology, Supplement 34 (1). pp. 60-77.

Davies, Jaclyn, Shepherd, Lloyd, Bryant, Catherine, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring Update: February - May 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Lewis, Stephen E., Silburn, D. Mark, Kookana, Rai S., and Shaw, Melanie (2016) Pesticide behavior, fate, and effects in the Tropics: an overview of the current state of knowledge. Journal of Agricultural and Food Chemistry, 64 (20). pp. 3917-3924.

McLeod, Ian M., and Clark, Timothy D. (2016) Limited capacity for faster digestion in larval coral reef fish at an elevated temperature. PLoS ONE, 11 (5). pp. 1-13.

Furuichi, Takahisa, Olley, Jon, Wilkinson, Scott, Lewis, Stephen, Bainbridge, Zoe, and Burton, Joanne (2016) Paired geochemical tracing and load monitoring analysis for identifying sediment sources in a large catchment draining into the Great Barrier Reef Lagoon. Geomorphology, 266. pp. 41-52.

Connolly, Rod, Dunn, Ryan, Jackson, Emma, Kristensen, Erik, Maxwell, Paul, Pearson, Ryan, Rasheed, Michael, and York, Paul (2016) Gold Coast Seagrass Sensitivities and Resilience (SRMP-003). Report. Griffith University, Gold Coast, QLD, Australia.

Reason, Carissa, York, Paul, Scott, Emma, McKenna, Skye, and Rasheed, Michael (2016) Seagrass Habitat of Mourilyan Harbour: annual monitoring report: 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Dichmont, Catherine M., Dutra, Leo X.C., Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Deng, Roy A., van Putten, Elizabeth I., Pascual, Ricardo, Dambacher, Jeffrey M., Warne, Michael St.J., Quinn, Ross H., Thébaud, Olivier, Bennett, John, Read, Mark, Wachenfeld, David, Davies, Julia, Garland, Anna, Dunning, Malcolm, Collier, Catherine, Waycott, Michelle, and Playford, Julia (2016) A generic method of engagement to elicit regional coastal management options. Ocean & Coastal Management, 124. pp. 22-32.

Burns, Kathyrn A., and Jones, Ross (2016) Assessment of sediment hydrocarbon contamination from the 2009 Montara oil blow out in the Timor Sea. Environmental Pollution, 211. pp. 214-225.

Connolly, Niall, Pearson, Richard, and Pearson, Benjamin (2016) Riparian vegetation and sediment gradients determine invertebrate diversity in streams draining an agricultural landscape. Agriculture, Ecosystems and Environment, 221. pp. 163-173.

York, Paul H., Reason, Carissa, Scott, Emma, Sankey, Tonia, and Rasheed, Michael A. (2016) Seagrass Habitat of Cairns Harbour and Trinity Inlet: annual monitoring report 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Ow, Y.X., Vogel, N., Collier, C.J., Holtum, J.A.M., Flores, F., and Uthicke, S. (2016) Nitrate fertilisation does not enhance CO₂ responses in two tropical seagrass species. Scientific Reports, 6. pp. 1-10.

Lamb, Joleah B., Wenger, Amelia S., Devlin, Michelle J., Ceccarelli, Daniela M., Williamson, David H., and Willis, Bette L. (2016) Reserves as tools for alleviating impacts of marine disease. Philosophical Transactions of the Royal Society B: Biological Sciences, 371 (1689). pp. 1-11.

Ow, Yan X., Uthicke, Sven, and Collier, Catherine J. (2016) Light levels affect carbon utilisation in tropical seagrass under ocean acidification. PLoS ONE, 11 (3). pp. 1-18.

Bryant, Catherine, Davies, Jaclyn, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring: November 2015 - February 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Starrs, Danswell, Ebner, Brendan C., and Fulton, Christopher J. (2016) All in the ears: unlocking the early life history biology and spatial ecology of fishes. Biological Reviews, 91 (10). pp. 86-105.

Clark, Tara R., Leonard, Nicole D., Zhao, Jian-xin, Brodie, Jon, McCook, Laurence J., Wachenfeld, David R., Nguyen, Ai Duc, Markham, Hannah L., and Pandolfi, John M. (2016) Historical photographs revisited: a case study for dating and characterizing recent loss of coral cover on the inshore Great Barrier Reef. Scientific Reports, 6. pp. 1-14.

Smith, Timothy M., York, Paul H., Macreadie, Peter I., Keough, Michael J., Ross, D. Jeff, and Sherman, Craig D.H. (2016) Recovery pathways from small scale disturbance in a temperate Australian seagrass. Marine Ecology Progress Series, 542. pp. 97-108.

O'Brien, Dominique, Lewis, Stephen, Davis, Aaron, Gallen, Christie, Smith, Rachael, Turner, Ryan, Warne, Michael, Turner, Scott, Caswell, Stewart, Mueller, Jochen F., and Brodie, Jon (2016) Spatial and temporal variability in pesticide exposure downstream of a heavily irrigated cropping area: application of different monitoring techniques. Journal of Agricultural and Food Chemistry, 64 (20). pp. 3975-3989.

Ryan, E.J., Smithers, S.G., Lewis, S.E., Clark, T.R., and Zhao, J.X. (2016) Chronostratigraphy of Bramston Reef reveals a long-term record of fringing reef growth under muddy conditions in the central Great Barrier Reef. Palaeogeography, Palaeoclimatology, Palaeoecology, 441 (Part 4). pp. 734-747.

Davies, Jaclyn, Bryant, Catherine, and Rasheed, Michael (2016) Gladstone Western Basin BPAR Monitoring: August - November 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Yang, Yuchen, Duke, Norman C., Peng, Fangfang, Li, Jianfang, Yang, Shuhuan, Zhong, Cairong, Zhou, Renchao, and Shi, Suhua (2016) Ancient geograpical barriers drive differentiation among Sonneratia caseolaris populations and recent divergence from S. Ianceolata. Frontiers in Plant Science, 7. pp. 1-14.

Bonthu, Subbareddy, Ganguly, Dipnarayan, Ramachandran, Purvaja, Ramachandran, Ramesh, Pattnaik, Ajit K., and Wolanski, Eric (2016) Both riverine detritus and dissolved nutrients drive lagoon fisheries. Estuarine, Coastal and Shelf Science , 183 (Part B). pp. 360-369.

Cooper, W.E., Kudo, H., and Duke, Norman C. (2016) Bruguiera hainesii C.G.Rogers (Rhizophoraceae), an endangered species recently discovered in Australia. Austrobaileya, 9 (4). pp. 481-488.

Le Port, A., Roycroft, E.J., Thakur, V., and Lavery, S.D. (2016) Characterisation of eleven new polymorphic microsatellite markers for the coastal stingray Dasyatis brevicaudata (Dasyatidae Hutton 1875), and cross-amplification in seven dasyatid species. Biochemical Systematics and Ecology, 65. pp. 234-237.

Bainbridge, Zoe, Lewis, Stephen, Smithers, Scott, Wilkinson, Scott, Douglas, Grant, Hillier, Stephen, and Brodie, Jon (2016) Clay mineral source tracing and characterisation of Burdekin River (NE Australia) and flood plume fine sediment. Journal of Soils Sediments, 16 (2). pp. 687-706.

Davis, Aaron M., and Moore, Alex R. (2016) Conservation potential of artificial water bodies for fish communities on a heavily modified agricultural floodplain. Aquatic Conservation: marine and freshwater ecosystems , 26 (6). pp. 1184-1196.

Ebner, Brendan C., Fulton, Christopher J., Donaldson, James A., and Schaffer, Jason (2016) Distinct habitat selection by freshwater morays in tropical rainforest streams. Ecology of Freshwater Fish, 25 (2). pp. 329-335.

James, Cassandra S., Mackay, Stephen J., Arthington, Angela H., Capon, Samatha J., Barnes, Anna, and Pearson, Ben (2016) Does stream flow structure woody riparian vegetation in subtropical catchments? Ecology and Evolution, 6 (16). pp. 5950-5963.

Tol, Samantha J., Coles, Rob G., and Congdon, Bradley C. (2016) Dugong dugon feeding in tropical Australian seagrass meadows: implications for conservation planning. PeerJ, 4.

Munday, Philip L., Watson, Sue-Ann, Parsons, Darren M., King, Alicia, Barr, Neill G., McLeod, Ian M., Allan, Bridie J.M., and Pether, Steve M.J. (2016) Effects of elevated CO2 on early life history development of the yellowtail kingfish, Seriola lalandi, a large pelagic fish. ICES Journal of Marine Science, 73 (3). pp. 641-649.

Wenger, Amelia S., Williamson, David H., da Silva, Eduardo T., Ceccarelli, Daniela M., Browne, Nicola, Petus, Caroline, and Devlin, Michelle J. (2016) Effects of reduced water quality on coral reefs in and out of no-take marine reserves. Conservation Biology, 30 (1). pp. 142-153.

Sheaves, Marcus, Coles, Robert, Dale, Pat, Grech, Alana, Pressey, Robert L., and Waltham, Nathan J. (2016) Enhancing the value and validity of EIA: serious science to protect Australia's Great Barrier Reef. Conservation Letters, 9 (5). pp. 377-383.

Sheaves, Marcus, Coles, Rob, Dale, Pat, Grech, Alana, Pressey, Robert L., and Waltham, Nathan J. (2016) Enhancing the value and validity of EIA: serious science to protect Australia’s Great Barrier Reef. Conservation Letters, 9 (5). pp. 377-383.

McKenna, S., Carter, A., Bryant, C., Jarvis, J., and Rasheed, M. (2016) Establishing indicators for a report card in a complex marine ecosystem. In: Abstracts from 13th International Coral Reef Symposium, pp. 221-222. From: ICRS 2016: 13th International Coral Reef Symposium, 19-24 June 2016, Honolulu, HI, USA.

Petus, Caroline, Devlin, Michelle, Thompson, Angus, McKenzie, Len, Da Silva, Eduardo Teixeira, Collier, Catherine, Tracey, Dieter, and Martin, Katherine (2016) Estimating the exposure of coral reefs and seagrass meadows to land-sourced contaminants in river flood plumes of the Great Barrier Reef: validating a simple satellite risk framework with environmental data. Remote Sensing, 8 (3).

Sherman, Craig D.H., York, Paul H., Smith, Timothy M., and Macreadie, Peter I. (2016) Fine-scale patterns of genetic variation in a widespread clonal seagrass species. Marine Biology, 163 (4).

Guo, Zixiao, Huang, Yelin, Chen, Yongmei, Duke, Norman C., Zhong, Cairong, and Shi, Sugua (2016) Genetic discontinuities in a dominant mangrove Rhizophora apiculata (Rhizophoraceae) in the Indo-Malesian region. Journal of Biogeography, 43. pp. 1856-1868.

Dutra, Leo X.C., Dichmont, Catherine M., van Putten, Ingrid E., Thébaud, Oliver, Deng, Roy A., Pascual, Ricardo, Owens, Randall, Jebreen, Eddie, Thompson, Carolyn, Warne, M.St.J., Quinn, R., Bennett, J., Read, M., Wachenfeld, D., Collier, Catherine, Waycott, Michelle, Davies, J., Garland, A., Dunning, M., and Playford, J. (2016) How important is the coast? A survey of coastal objectives in an Australian regional city. Marine Policy, 71. pp. 229-241.

Bird, Michael I., O'Grady, Damien, and Ulm, Sean (2016) Humans, water, and the colonization of Australia. Proceedings of the National Academy of Sciences, 113 (41). pp. 11477-11482.

Karim, Fazlul, Petheram, Cuan, Marvanek, Steve, Ticehurst, Catherine, Wallace, Jim, and Hasan, Masud (2016) Impact of climate change on floodplain inundation and hydrological connectivity between wetlands and rivers in a tropical river catchment. Hydrological Processes, 30 (10). pp. 1574-1593.

Chartrand, Kathryn M., Bryant, Catherine V., Carter, Alexandra B., Ralph, Peter J., and Rasheed, Michael A. (2016) Light thresholds to prevent dredging impacts on the Great Barrier Reef seagrass, Zostera muelleri ssp. capricorni. Frontiers in Marine Science, 3.

Bryant, Catherine, Davies, Jaclyn, Sankey, Tonia, and Rasheed, Michael (2016) Long-Term Seagrass Monitoring in Port Curtis: quarterly permanent transect monitoring progress report 2009 to 2015. Report. James Cook University, Cairns, QLD, Australia.

Golbuu, Yimnang, Gouezo, Marine, Kurihara, Haruko, Rehm, Lincoln, and Wolanski, Eric (2016) Long-term isolation and local adaptation in Palau's Nikko Bay help corals thrive in acidic waters. Coral Reefs, 35 (3). pp. 909-918.

Dale, Allan, Vella, Karen, Pressey, Robert L., Brodie, Jon, Gooch, Margaret, Potts, Ruth, and Eberhard, Rachel (2016) Monitoring and adaptively reducing system-wide governance risks facing the GBR: final report. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Ryan, Emma, Lewis, Stephen E., Smithers, Scott G., Clark, Tara R., and Zhao, Jian-xin (2016) Multi-scale records of reef development and condition provide context for contemporary changes on inshore reefs. Global and Planetary Change, 146. pp. 162-178.

Pusey, Bradley J., Fisher, Clemency, and Maclaine, James (2016) On the nature of Scleropages leichardti Günther, 1864 (Pisces: Osteoglossidae). Zootaxa, 4173 (1). pp. 75-84.

Bryant, C.V., Carter, A.B., Jarvis, J.C., and Rasheed, M.A. (2016) Port Curtis seagrass seed bank density and viability studies: year 2 report. Report. James Cook University, Cairns, QLD, Australia.

Thomson, Alexandra C.G., York, Paul H., Smith, Tim M., Sherman, Craig D.H., Booth, David J., Keough, Michael J., Ross, D. Jeff, and Macreadie, Peter I. (2016) Response to "Comment on 'Seagrass viviparous propagules as a potential long-distance dispersal mechanism' by A. C. G. Thomson et al". Estuaries and Coasts, 39. pp. 875-876.

Davis, Aaron M., Pearson, Richard G., Brodie, Jon E., and Butler, Barry (2016) Review and conceptual models of agricultural impacts and water quality in waterways of the Great Barrier Reef catchment area. Marine and Freshwater Research, 68 (1). pp. 1-19.

Dale, Allan P., Vella, Karen, Pressey, Robert L., Brodie, Jon, Gooch, Margaret, Potts, Ruth, and Eberhard, Rachel (2016) Risk analysis of the governance system affecting outcomes in the Great Barrier Reef. Journal of Environmental Management, 183 (Part 3). pp. 712-721.

Davies, J.D., Bryant, C.V., Carter, A.B., and Rasheed, M.A. (2016) Seagrasses in Port Curtis and Rodds Bay 2015: annual long-term monitoring. Report. James Cook University, Cairns, QLD, Australia.

Mackenzie, Jock R., Duke, Norman C., and Wood, Apanie L. (2016) The Shoreline Video Assessment Method (S-VAM): using dynamic hyperlapse image acquisition to evaluate shoreline mangrove forest structure, values, degradation and threats. Marine Pollution Bulletin, 109 (2). pp. 751-763.

Grech, Alana, Wolter, Jolan, Coles, Rob, McKenzie, Len, Rasheed, Michael, Thomas, Christopher, Waycott, Michelle, and Hanert, Emmanuel (2016) Spatial patterns of seagrass dispersaland settlement. Diversity and Distributions, 22 (11). pp. 1150-1162.

Barnett, Adam, Abrantes, Kátya G., Baker, Ronald, Diedrich, Amy S., Farr, Marina, Kuilboer, Alf, Mahony, Tracey, McLeod, Ian, Moscardo, Gianna, Prideaux, Murray, Stoeckl, Natalie, van Luyn, Ariella, and Sheaves, Marcus (2016) Sportfisheries, conservation and sustainable livelihoods: a multidisciplinary guide to developing best practice. Fish and Fisheries, 17 (3). pp. 696-713.

Waltham, Nathan (2016) Unravelling life history of the Inland Freshwater Crab Austrothelphusa transversa in seasonal tropical river catchments. Australian Zoologist, 38 (2). pp. 217-222.

Baird, Mark E., Adams, Matthew P., Babcock, Russell C., Oubelkheir, Kadija, Mongin, Mathieu, Wild-Allen, Karen A., Skerratt, Jennifer, Robson, Barbara J., Petrou, Katherina, Ralph, Peter J., O’Brien, Katherine R., Carter, Alex B., Jarvis, Jessie C., and Rasheed, Michael A. (2016) A biophysical representation of seagrass growth for application in a complex shallow-water biogeochemical model. Ecological Modelling, 325. pp. 13-27.

Takahashi, M., Noonan, S.H.C., Fabricius, K.E., and Collier, C.J. (2016) The effects of long-term in situ CO(2) enrichment on tropical seagrass communities at volcanic vents. ICES Journal of Marine Science, 73 (3). pp. 876-886.

Huveneers, Charlie, Simpfendorfer, Colin A., Kim, Susan, Semmens, Jayson M., Hobday, Alistair J., Pederson, Hugh, Stieglitz, Thomas, Vallee, Richard, Webber, Dale, Heupel, Michelle R., Peddemors, Vic, and Harcourt, Robert G. (2016) The influence of environmental parameters on the performance and detection range of acoustic receivers. Methods in Ecology and Evolution, 7 (7). pp. 825-835.

Lewis, Stephen E., Wüst, Raphael A.J., Webster, Jody, M., Collins, John, Wright, Shelley, A., and Jacobsen, Geraldine (2015) Rapid relative sea-level fall along north-eastern Australia between 1200 and 800 cal. yr BP: an appraisal of the oyster evidence. Marine Geology, 370. pp. 20-30.

Álvarez-Romero, Jorge G., Pressey, Robert L., Ban, Natalie C., and Brodie, Jon (2015) Advancing land-sea conservation planning: integrating modelling of catchments, land-use change, and river plumes to prioritise catchment management and protection. PLoS ONE, 10 (12). pp. 1-26.

Moosdorf, Nils, Stieglitz, Thomas, Waska, Hannelore, Dürr, Hans H., and Hartmann, Jens (2015) Submarine groundwater discharge from tropical islands: a review. Grundwasser, 20 (1). pp. 53-67.

Connolly, N.M., Pearson, R.G., Loong, D., Maughan, M., and Brodie, J. (2015) Water quality variation along streams with similar agricultural development but contrasting riparian vegetation. Agriculture, Ecosystems and Environment, 213. pp. 11-20.

Razaghi, Ali, Huerlimann, Roger, Owens, Leigh, and Heimann, Kirsten (2015) Increased expression and secretion of recombinant hINFγ through amino acid starvation-induced selective pressure on the adjacent HIS4 gene in Pichia pastoris. Acta Facultatis Pharmaceuticae Universitatis Comenianae, 62 (2). pp. 1-8.

Critchell, K., Grech, A., Schlaefer, J., Andutta, F.P., Lambrechts, J., Wolanski, E., and Hamann, M. (2015) Modelling the fate of marine debris along a complex shoreline: lessons from the Great Barrier Reef. Estuarine, Coastal and Shelf Science , 167 (Part B). pp. 414-426.

Marsh, Helene, Grayson, Jillian, Grech, Alana, Hagihara, Rie, and Sobtzick, Susan (2015) Re-evaluation of the sustainability of a marine mammal harvest by indigenous people using several lines of evidence. Biological Conservation, 192. pp. 324-330.

Wilkinson, Adam D., Collier, Catherine J., Flores, Florita, and Negri, Andrew P. (2015) Acute and additive toxicity of ten photosystem-II herbicides to seagrass. Scientific Reports, 5. pp. 1-11.

Devlin, M.J., Massoud, M.S., Hamid, S.A., Al-Zaidan, A., Al-Sarawi, H., Al-Enezi, M., Al-Ghofran, L., Smith, A.J., Barry, J., Stentiford, G.D., Morris, S., da Silva, E.T., and Lyons, B.P. (2015) Changes in the water quality conditions of Kuwait's marine waters: long term impacts of nutrient enrichment. Marine Pollution Bulletin, 100 (2). pp. 607-620.

Schliep, M., Pernice, M., Sinutok, S., Bryant, C.V., York, P.H., Rasheed, M.A., and Ralph, P.J. (2015) Evaluation of reference genes for RT-QPCR studies in the seagrass Zostera muelleri exposed to light limitation. Scientific Reports, 5. pp. 1-11.

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Waltham, Nathan, McKenna, Skye, York, Paul, Devlin, Michelle, Campbell, Sean, Rasheed, Michael, Da Silva, Eduardo, Petus, Caroline, and Ridd, Peter (2015) Port of Mackay and Hay Point Ambient Marine Water Quality Monitoring Program (July 2014 to July 2015). Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Ricart, Aurora M., York, Paul H., Rasheed, Michael A., Pérez, Marta, Romero, Javier, Bryant, Catherine V., and Macreadie, Peter I. (2015) Variability of sedimentary organic carbon in patchy seagrass landscapes. Marine Pollution Bulletin, 100 (1). pp. 476-482.

Devlin, Michelle J., Petus, Caroline, Da Silva, Eduardo, Tracey, Dieter, Wolff, Nicholas H., Waterhouse, Jane, and Brodie, Jon (2015) Water quality and river plume monitoring in the Great Barrier Reef: an overview of methods based on ocean colour satellite data. Remote Sensing, 7 (10). pp. 12909-12941.

Connolly, Rod M., and Waltham, Nathan J. (2015) Spatial analysis of carbon isotopes reveals seagrass contribution to fishery food web. Ecosphere, 6 (9). pp. 1-12.

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Davies, Jaclyn, Scott, Emma, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Duplication BPAR Monitoring: May - August 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

James, Cassandra S., Capon, Samatha J., and Quinn, Gerry P. (2015) Nurse plant effects of a dominant shrub (Duma florulenta) on understorey vegetation in a large, semiarid wetland in relation to flood frequency and drying. Journal of Vegetation Science, 26 (5). pp. 985-994.

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York, Paul H., Carter, Alex B., Chartrand, Kathyrn, Sankey, Tonia, Wells, Linda, and Rasheed, Michael A. (2015) Dynamics of a deep-water seagrass population on the Great Barrier Reef: annual occurrence and response to a major dredging program. Scientific Reports, 5. pp. 1-9.

Wooldridge, Scott A., Brodie, Jon E., Kroon, Frederieke J., and Turner, Ryan D.R. (2015) Ecologically based targets for bioavailable (reactive) nitrogen discharge from the drainage basins of the Wet Tropics region, Great Barrier Reef. Marine Pollution Bulletin, 97 (1-2). pp. 262-272.

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Waltham, Nathan J., and Sheaves, Marcus (2015) Expanding coastal urban and industrial seascape in the Great Barrier Reef World Heritage Area: critical need for coordinated planning and policy. Marine Policy, 57. pp. 78-84.

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Bartley, Rebecca, Croke, Jacky, Bainbridge, Zoe T., Austin, Jenet M., and Kuhnert, Petra M. (2015) Combining contemporary and long-term erosion rates to target erosion hot-spots in the Great Barrier Reef, Australia. Anthropocene, 10. pp. 1-12.

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Carter, A.B., Davies, J.D., Bryant, C.V., Jarvis, J.C., McKenna, S.A., and Rasheed, M.A. (2015) Seagrasses in Port Curtis and Rodds Bay 2014: annual long-term monitoring, biannual western basin, and updated baseline survey. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Morgan, D.L., Allen, M.G., Ebner, B.C., Whitty, J.M., and Beatty, S.J. (2015) Discovery of a pupping site and nursery for critically endangered green sawfish Pristis zijsron. Journal of Fish Biology, 86 (5). pp. 1658-1663.

McKenna, S.A., Sozou, A.M., Scott, E.L., and Rasheed, M.A. (2015) Port of Abbot Point long-term seagrass monitoring: annual report 2013-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

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Davies, Jaclyn, Scott, Emma, Bryant, Catherine, and Rasheed, Michael (2015) Gladstone Western Basin and Channel Duplication BPAR Monitoring: November 2014 - March 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Weeks, Scarla J., Magno-Canto, Marites M., Jaine, Fabrice R.A., Brodie, Jon, and Richardson, Anthony J. (2015) Unique sequence of events triggers manta ray feeding frenzy in the Southern Great Barrier Reef, Australia. Remote Sensing, 7 (3). pp. 3138-3152.

Wallace, Jim, Waltham, Nathan, Burrows, Damien, and McJannet, David (2015) The temperature regimes of dry-season waterholes in tropical northern Australia: potential effects on fish refugia. Freshwater science, 34 (2). pp. 663-678.

Sozou, A.M., McKenna, S.A., and Rasheed, M.A. (2015) Port of Karumba long-term seagrass monitoring: November 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Kroon, F., Phillips, S., Burrows, D., and Hogan, A. (2015) Presence and absence of non-native fish species in the Wet Tropics region, Australia. Journal of Fish Biology, 86 (3). pp. 1177-1185.

Sheaves, Marcus, Baker, Ronald, Nagelkerken, Ivan, and Connolly, Rod M. (2015) True value of estuarine and coastal nurseries for fish: incorporating complexity and dynamics. Estuaries and Coasts, 38 (2). pp. 401-414.

Veron, John, Stafford-Smith, Mary, DeVantier, Lyndon, and Turak, Emre (2015) Overview of distribution patterns of zooxanthellate Scleractinia. Frontiers in Marine Science, 1. pp. 1-19.

Wilkinson, Adam D., Collier, Catherine J., Flores, Florita, Mercurio, Phil, O'Brien, Jake, Ralph, Peter J., and Negri, Andrew P. (2015) A miniature bioassay for testing the acute phytotoxicity of Photosystem II herbicides on seagrass. PLoS ONE, 10 (2). pp. 1-17.

Coles, Robert G., Rasheed, Michael A., McKenzie, Len J., Grech, Alana, York, Paul H., Sheaves, Marcus, McKenna, Skye, and Bryant, Catherine (2015) The Great Barrier Reef World Heritage Area seagrasses: managing this iconic Australian ecosystem resource for the future. Estuarine, Coastal and Shelf Science , 153. A1-A12.

Hall, N.M., Berry, K.L.E., Rintoul, L., and Hoogenboom, M.O. (2015) Microplastic ingestion by scleractinian corals. Marine Biology, 162 (3). pp. 725-732.

McKenna, S.A., and Rasheed, M.A. (2015) Port of Hay Point & Keswick Island seagrass & benthic habitat: baseline survey: 2014. Report. James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, Tol, Samantha, and Rasheed, Michael (2015) Port of Townsville annual monitoring and baseline survey: October 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Taylor, H.A., Rasheed, M.A., and Carter, A.B. (2015) Port of Weipa long-term seagrass monitoring: 2000-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Abrantes, Kátya G., Johnston, Ross, Connolly, Rod M., and Sheaves, Marcus (2015) Importance of mangrove carbon for aquatic food webs in wet–dry tropical estuaries. Estuaries and Coasts, 38 (1). pp. 383-399.

Vermeiren, Peter, and Sheaves, Marcus (2015) Predictable habitat associations of four crab species across the low intertidal landscape of a tropical estuary over time. Estuaries and Coasts, 38 (1). pp. 285-295.

Lyons, B.P. , Barber, J.L., Rumney, H.S., Bolam, T.P.C., Bersuder, P., Law, R.J., Mason, C., Smith, A.J., Morris, S., Devlin, M.J., Al-Enezi, M., Massoud, M.S., Al-Zaidan, A.S., and Al-Sarawi, H.A. (2015) Baseline survey of marine sediments collected from the State of Kuwait: PAHs, PCBs, brominated flame retardants and metal contamination. Marine Pollution Bulletin, 100 (2). pp. 629-636.

Arthington, Angela A., Godfrey, Paul C., Pearson, Richard G., Karim, Fazlul, and Wallace, Jim (2015) Biodiversity values of remnant freshwater floodplain lagoons in agricultural catchments: evidence for fish of the Wet Tropics bioregion, northern Australia. Aquatic Conservation: marine and freshwater ecosystems , 25 (3). pp. 336-352.

Starrs, Danswell, Ebner, Brendan C., and Fulton, Christopher J. (2015) Ceasefire: minimal aggression among Murray River crayfish feeding upon patches of allochthonous material. Australian Journal of Zoology, 63 (2). pp. 115-121.

McKenna, Skye, Jarvis, Jessie, Sankey, Tonia, Reason, Carissa, Coles, Robert, and Rasheed, Michael (2015) Declines of seagrasses in a tropical harbour, North Queensland, Australia, are not the result of a single event. Journal of Biosciences, 40 (2). pp. 389-398.

McCormack, C., Chartrand, K., Thomas, R., Tol, S., Szabo, M., and Rasheed, M.A. (2015) Deepwater seagrass dynamics: light requirements, seasonal change and mechanisms of recruitment for deepwater seagrasses: interim report. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alex, Bryant, Catherine, Jarvis, Jessie, York, Paul, and Rasheed, Michael (2015) Developing thresholds and indicators of seagrass meadow condition using long-term monitoring data. In: Abstracts from the 52nd Australian Marine Science Association Annual Conference, p. 90. From: AMSA 2015: 52nd Australian Marine Science Association Annual Conference, 5-9 July 2015, Geelong, VIC, Australia.

Pernice, M., Schliep, M., Szabo, M., Rasheed, M., Bryant, C., York, P., Chartrand, K., Petrou, K., and Ralph, P. (2015) Development of a molecular biology tool kit to monitor dredging-related light stress in the seagrass Zostera muelleri ssp. capricorni in Port Curtis. Report. TropWATER, Cairns, QLD, Australia.

Carter, Alex, Jarvis, Jessie, Bryant, Catherine, and Rasheed, Michael (2015) Development of seagrass indicators for the Gladstone Healthy Harbour Partnership report card. Report. James Cook University, Cairns, QLD, Australia.

Elliott, Michael, and Wolanski, Eric (2015) Editorial - Climate change impacts on rural poverty in low-elevation coastal zones, Edward B. Barbier. Estuarine, Coastal and Shelf Science , 165. ii-iii.

Wenger, Amelia S., Fabricius, Katharina E., Jones, Geoffrey P., and Brodie, Jon E. (2015) Effects of sedimentation, eutrophication and chemical pollution on coral reef fishes. In: Mora, Camilo, (ed.) Ecology of Fishes on Coral Reefs. Cambridge University Press, Cambridge, UK, pp. 145-153.

Jarvis, Jessie C., and Moore, Kenneth A. (2015) Effects of seed source, sediment type, and burial depth on mixed-annual and perennial Zostera marina L. seed germination and seedling establishment. Estuaries and Coasts, 38 (3). pp. 964-978.

Robson, Heather, Basiita, Rose, Noble, Tansyn, Burrows, Damien, and Jerry, Dean (2015) Environmental DNA (eDNA) survey of Tilapia in northern NSW. Report. James Cook University, Townsville, QLD, Australia.

Jerry, Dean, Noble, Tansyn, Basiita, Rose, Robson, Heather, and Burrows, Damien (2015) Environmental DNA (eDNA) survey of Tilapia infestations in the Moranbah/Isaac region. Report. James Cook University, Townsville, QLD, Australia.

Robson, Heather, Basiita, Rose, Noble, Tansyn, Burrows, Damien, and Jerry, Dean (2015) Environmental DNA (eDNA) survey of Tilapia on the mid coast (Geraldton region) of Western Australia. Report. James Cook University, Townsville, QLD, Australia.

Jerry, Dean, Noble, Tansyn, Robson, Heather, and Burrows, Damien (2015) Environmental DNA (eDNA) survey of the Tilapia in the Cudgeon Region, NSW. Report. James Cook University, Cairns, QLD, Australia.

Waltham, Nathan J., and Sheaves, Marcus (2015) Expanding urban and industrial development in tropical seascapes necessitates green engineering and spatial planning thinking. Environmental Science and Technology, 49 (5). pp. 2598-2599.

Ebner, Brendan C., Fulton, Christopher J., Cousins, Stephen, Donaldson, James A., Kennard, Mark J., Meynecke, Jan-Olaf, and Schaffer, Jason (2015) Filming and snorkelling as visual techniques to survey fauna in difficult to access tropical rainforest streams. Marine and Freshwater Research, 66 (2). pp. 120-126.

Brookes, Justin D., Aldridge, Kane T., Bice, Chris M., Deegan, Brian, Ferguson, Greg J., Paton, David C., Sheaves, Marcus, Ye, Qifeng, and Zampatti, Brenton P. (2015) Fish productivity in the lower lakes and Coorong, Australia, during severe drought. Transactions of the Royal Society of South Australia, 139 (2). pp. 189-215.

Baker, Ronald, Sheaves, Marcus, and Johnston, Ross (2015) Geographic variation in mangrove flooding and accessibility for fishes and nektonic crustaceans. Hydrobiologia, 762 (1). pp. 1-14.

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Davies, Jaclyn, Sankey, Tonia, Jarvis, Jessie, Bryant, Catherine, and Rasheed, Michael (2015) Long term seagrass monitoring in Port Curtis: quarterly permanent transect monitoring progress report 2009 to 2014. Report. James Cook University, Cairns, QLD, Australia.

Brodie, Jon, Lewis, Stephen, Davis, Aaron, Bainbridge, Zoe, O'Brien, Dominique, Waterhouse, Jane, Devlin, Michelle, and Thomas, Colette R. (2015) Management of agriculture to preserve environmental values of the Great Barrier Reef, Australia. In: Chicharo, Luís, Müller, Felix, and Fohrer, Nicola, (eds.) Ecosystems Services and River Basin Ecohydrology. Springer, Dordrecht, Netherlands, pp. 275-292.

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Duke, Norman C., and Schmitt, Klaus (2015) Mangroves: unusual forests at the seas edge. In: Pancel, Laslo, and Köhl, Michael, (eds.) Tropical Forestry Handbook. Springer, Berlin, Germany, pp. 1-24.

Stehfest, Kilian M., Patterson, Toby A., Barnett, Adam, and Semmens, Jayson M. (2015) Markov models and network analysis reveal sex-specific differences in the space-use of a coastal apex predator. Oikos, 124 (3). pp. 307-318.

Lyons, B.P., Devlin, M.J., Abdul Hamid, S.A., Al-Otiabi, A.F. , Al-Enezi, M., Massoud, M.S., Al-Zaidan, A.S., Smith, A.J., Morris, S., Bersuder, P., Barber, J.L., Papachlimitzou, A., and Al-Sarawi, H.A. (2015) Microbial water quality and sedimentary faecal sterols as markers of sewage contamination in Kuwait. Marine Pollution Bulletin, 100 (2). pp. 689-698.

Schaffer, Jason R., Hamann, Mark, Rowe, Richard, and Burrows, Damien W. (2015) Muddy waters: the influence of high suspended-sediment concentration on the diving behaviour of a bimodally respiring freshwater turtle from north-eastern Australia. Marine and Freshwater Research.

Kelly, E., Gibson-Kueh, S., Ebner, B.C., Donaldson, J.A., Yang, R., Buller, N., Hair, S., Morgan, D.L., and Lymbery, A.J. (2015) Observations on the health of Tandanus tropicanus (Teleostei: Plotosidae) from an Australian river system. Australian Zoologist, 38 (1). pp. 83-89.

Dao, Hoc Tan, Smith-Keune, Carolyn, Wolanski, Eric, Jones, Clive M., and Jerry, Dean R. (2015) Oceanographic currents and local ecological knowledge indicate, and genetics does not refute, a contemporary pattern of larval dispersal for the ornate spiny lobster, Panulirus ornatus in the south-east Asian archipelago. PLoS ONE, 10 (5). pp. 1-19.

Jarvis, J.C., Scott, E.L., Bryant, C.V., and Rasheed, M.A. (2015) Port Curtis seagrass seed bank density and viability studies: year 1. Report. James Cook University, Cairns, QLD, Australia.

McKenna, S.A., Chartrand, K.M., Jarvis, J.C., Carter, A.B., Davies, J.C., and Rasheed, M.A. (2015) Port of Abbot Point: initial light thresholds for modelling impacts to seagrass from the Abbot Point Growth Gateway Project. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Templeman, Michelle A., and Kingsford, Michael J. (2015) Predicting aqueous copper and zinc accumulation in the upside-down jellyfish Cassiopea maremetens through the use of biokinetic models. Environmental Monitoring and Assessment, 187 (416). pp. 1-8.

McKenna, Skye, Rasheed, Michael, Coles, Robert, Carter, Alex, Jarvis, Jessie, York, Paul, Davies, Jaclyn, and Bryant, Catherine (2015) Reaping the benefits (and costs) of monitoring seagrass in Queensland Ports. In: Abstracts from the 52nd Australian Marine Science Association Annual Conference, p. 215. From: AMSA 2015: 52nd Australian Marine Science Association Annual Conference, 5-9 July 2015, Geelong, VIC, Australia.

Creighton, Colin, Boon, Paul I., Brookes, Justin D., and Sheaves, Marcus (2015) Repairing Australia's estuaries for improved fisheries production: what benefits, at what cost? Marine and Freshwater Research, 66 (6). pp. 493-507.

Smith, A.J., McGowan, T., Devlin, M.J., Massoud, M.S., Al-Enezi, M., Al-Zaidan, A.S., Al-Sarawi, H.A., and Lyons, B.P. (2015) Screening for contaminant hotspots in the marine environment of Kuwait using ecotoxicological and chemical screening techniques. Marine Pollution Bulletin, 100 (2). pp. 681-688.

Thomson, Alexandra C.G., York, Paul H., Smith, Timothy M., Sherman, Craig D.H., Booth, David J., Keough, Michael J., Ross, D. Jeff, and Macreadie, Peter I. (2015) Seagrass viviparous propagules as a potential long-distance dispersal mechanism. Estuaries and Coasts, 38. pp. 927-940.

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Melland, Alice R., Silburn, D. Mark, McHugh, Allen D., Fillols, Emilie, Rojas-Ponce, Samuel, Baillie, Craig, and Lewis, Stephen (2015) Spot spraying reduces herbicide concentrations in runoff. Journal of Agricultural and Food Chemistry, 60 (20). pp. 4009-4020.

McCook, L., Schaffelke, B., Apte, S., Brinkman, R., Brodie, J., Erftemeijer, P., Eyre, B., Hoogerwerf, F., Irvine, I., Jones, R., King, B., Marsh, H., Masini, R., Morton, R., Pitcher, R., Rasheed, M., Sheaves, M., Symonds, A., and Warne, M.St.J. (2015) Synthesis of current knowledge of the biophysical impacts of dredging and disposal on the Great Barrier Reef: report of an Independent Panel of Experts. Report. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia.

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Xu, Hao, Newton, Alice, Wolanski, Eric, and Chen, Zhongyuan (2015) The fate of phosphorus in the Yangtze (Changjiang) Estuary, China, under multi-stressors: hindsight and forecast. Estuarine, Coastal and Shelf Science , 163 (Part B). pp. 1-6.

Devlin, Michelle, Le Quesne, Will J.F., and Lyons, Brett P. (2015) The marine environment of Kuwait—emerging issues in a rapidly changing environment. Marine Pollution Bulletin, 100 (2). pp. 593-596.

Kiwango, Halima, Njau, Karoli N., and Wolanski, Eric (2015) The need to enforce minimum environmental flow requirements in Tanzania to preserve estuaries: case study of mangrove-fringed Wami River estuary. Ecohydrology and Hydrobiology, 15 (4). pp. 171-181.

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Álvarez-Romero, Jorge G., Wilkinson, Scott N., Pressey, Robert L., Ban, Natalie C., Kool, Johnathan, and Brodie, Jon (2014) Modeling catchment nutrients and sediment loads to inform regional management of water quality in coastal-marine ecosystems: a comparison of two approaches. Journal of Environmental Management, 146. pp. 164-178.

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Carter, Alex, Taylor, Helen, and Rasheed, Michael (2014) Torres Strait mapping: seagrass consolidation: 2002-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Morgan, David L., Unmack, Peter J., Beatty, Stephen J., Ebner, Brendan C., Allen, Mark G., Keleher, James J., Donaldson, James A., and Murphy, Jon (2014) An overview of the 'freshwater fishes' of Western Australia. Journal of the Royal Society of Western Australia, 97. pp. 263-278.

Karim, Fazlul, Kingsey-Henderson, Anne, Wallace, Jim, Godfrey, Paul, Arthington, Angela H., and Pearson, Richard G. (2014) Modelling hydrological connectivity of tropical floodplain wetlands via a combined natural and artificial stream network. Hydrological Processes, 28 (23). pp. 5696-5710.

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Carter, A.B., Taylor, H.A., McKenna, S.A., York, P.Y., and Rasheed, M.A. (2014) The effects of climate on seagrasses in the Torres Strait: 2011-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Wenger, Amelia S., McCormick, Mark I., Endo, Geoff G.K., McLeod, Ian M., Kroom, Frederieke J., and Jones, Geoffrey P. (2014) Suspended sediment prolongs larval development in a coral reef fish. Journal of Experimental Biology, 217. pp. 1122-1128.

Jarvis, Jessie C., Moore, Kenneth A., and Kenworthy, W. Judson (2014) Persistence of Zostera marina L. (eelgrass) seeds in the sediment seed bank. Journal of Experimental Marine Biology and Ecology, 459. pp. 126-136.

Van Dijk, Kor-Jent, Mellors, Jane, and Waycott, Michelle (2014) Development of multiplex microsatellite PCR panels for the seagrass Thalassia hemprichii (Hydrocharitaceae). Applications in Plant Sciences, 2 (11). pp. 1-5.

McKenzie, Len J., Yoshida, Rudi L., and Unsworth, Richard K.F. (2014) Disturbance influences the invasion of a seagrass into an existing meadow. Marine Pollution Bulletin, 86 (1-2). pp. 186-196.

Wolanski, Eric, and Kingsford, Michael J. (2014) Oceanographic and behavioural assumptions in models of the fate of coral and coral reef fish larvae. Journal of the Royal Society Interface, 11 (98). pp. 1-12.

Bryant, Catherine, and Reason, Carissa (2014) Gladstone Western Basin and Channel Dupliaction BPAR Monitoring May - July 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davis, A.M., Lewis, S.E., Brodie, J.E., and Benson, Ash (2014) The potential benefits of herbicide regulation: a cautionary note for the Great Barrier Reef catchment area. Science of the Total Environment, 490. pp. 81-92.

Carter, Alex, Taylor, Helen, and Rasheed, Michael (2014) Torres Strait dugong sanctuary: deepwater seagrass monitoring 2010-2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Waltham, Nathan J., Barry, Michael, McAlister, Tony, Weber, Tony, and Groth, Dominic (2014) Protecting the green behind the gold: catchment-wide restoration efforts necessary to achieve nutrient and sediment load reduction targets in Gold Coast City, Australia. Environmental Management, 54 (4). pp. 840-851.

Petus, Caroline, Collier, Catherine, Devlin, Michelle, Rasheed, Michael, and McKenna, Skye (2014) Using MODIS data for understanding changes in seagrass meadow health: a case study in the Great Barrier Reef (Australia). Marine Environmental Research, 98. 68- 85.

Fabricius, K.E, Logan, M., Weeks, S., and Brodie, J. (2014) The effects of river run-off on water clarity across the central Great Barrier Reef. Marine Pollution Bulletin, 84 (1-2). pp. 191-200.

Salmo III, Severino G., Lovelock, Catherine E., and Duke, Norman C. (2014) Assessment of vegetation and soil conditions in restored mangroves interrupted by severe tropical typhoon 'Chan-hom' in the Philippines. Hydrobiologia, 733 (1). pp. 85-102.

Binning, Sandra A., Barnes, Jeffrey I., Davies, Jaclyn N., Backwell, Patricia R.Y., Keogh, J. Scott, and Roche, Dominique G. (2014) Ectoparasites modify escape behaviour, but not performance, in a coral reef fish. Animal Behaviour, 93. pp. 1-7.

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Carter, A.B., Taylor, H.A., McKenna, S.A., and Rasheed, M.A. (2014) Long-term seagrass monitoring in the Port of Thursday Island: March 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Jackson, Emma, Nielsen, Jesper, Weatherall, Emily, Bryant, Catherine, Jones, Conor, Hendry, Rebecca, and Campbell, Marnie (2014) Predicting seagrass connectivity in a disturbed environment. In: 51st Australian Marine Sciences Association annual conference: investigating our marine nation: abstracts1st Annual Conference: program handbook and abstracts, p. 101. From: AMSA 2014 Investigating our Marine Nation: 51st Annual Conference of the Australian Marine Sciences Association, 6-10 July 2014, Canberra, Australian Capital Territory.

Brodie, Jon, Waterhouse, Jane, and Maynard, Jeffrey (2014) Prioritising catchment agricultural management practice change through marine risk assessment in the Great Barrier Reef. In: Abstracts from the Society for Conservation Biology Oceania Conference, pp. 101-102. From: Society for Conservation Biology Oceania Conference, 9-11 July 2014, Suva, Fiji.

Sheaves, Marcus, Brookes, Justin, Coles, Robert, Freckelton, Marnie, Groves, Paul, Johnston, Ross, and Wingberg, Pia (2014) Repair and revitalisation of Australia's tropical estuaries and coastal wetlands: opportunities and constraints for the reinstatement of lost function and productivity. Marine Policy, 47. pp. 23-38.

Bryant, Catherine, Chartrand, Katie, Rasheed, Michael, Leith, Mark, Thomas, Ross, and Ralph, Peter (2014) Seasonal recruitment and senescence in tropical deepwater seagrass meadows. In: 51st Australian Marine Sciences Association annual conference: investigating our marine nation: abstracts, p. 139. From: AMSA 2014 Investigating our Marine Nation: 51st Annual Conference of the Australian Marine Sciences Association, 6-10 July 2014, Canberra, ACT, Australia.

Short, Frederick T., Coles, Robert, Fortes, Miguel D., Victor, Steven, Salik, Maxwell, Isnain, Irwan, Andrew, Jay, and Seno, Aganta (2014) Monitoring in the Western Pacific region shows evidence of seagrass decline in line with global trends. Marine Pollution Bulletin, 83 (2). pp. 408-416.

Unsworth, Richard K.F., van Keulen, Mike, and Coles, Rob G. (2014) Seagrass meadows in a globally changing environment. Marine Pollution Bulletin, 83 (2). pp. 383-386.

Cullen-Unsworth, Leanne C., Nordlund, Lina Mtwana, Paddock, Jessica, Baker, Susan, McKenzie, Len, and Unsworth, Richard K.F. (2014) Seagrass meadows globally as a coupled social–ecological system: implications for human wellbeing. Marine Pollution Bulletin, 83 (2). pp. 387-397.

Hawdon, Aaron, McJannet, David, and Wallace, Jim (2014) Calibration and correction procedures for cosmic-ray neutron soil moisture probes located across Australia. Water Resources Research, 50 (6). pp. 5029-5043.

Yaakub, Siti Maryam, McKenzie, Len J., Erftemeijer, Paul L.A., Bourma, Tjeerd, and Todd, Peter A. (2014) Courage under fire: seagrass persistence adjacent to a highly urbanised city–state. Marine Pollution Bulletin, 83 (2). pp. 417-424.

Bryant, Catherine, and Tasker, Zoe (2014) Gladstone Western Basin Post Dredge BPAR Monitoring March - May 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Trave, Claudia, and Sheaves, Marcus (2014) Bimini Islands: a characterization of the two major nursery areas; status and perspectives. SpringerPlus, 3. pp. 1-9.

Petus, Caroline, da Silva, Eduardo Teixeira, Devlin, Michelle, Wenger, Amelia S., and Álvarez-Romero, Jorge G. (2014) Using MODIS data for mapping of water types within river plumes in the Great Barrier Reef, Australia: towards the production of river plume risk maps for reef and seagrass ecosystems. Journal of Environmental Management, 137. pp. 163-177.

Bryant, C., Davies, J.D., Jarvis, J.C., Tol, S., and Rasheed, M. (2014) Seagrasses in Port Curtis & Rodds Bay 2013: annual long term monitoring, biannual western basin surveys & updated baseline survey. Report. TropWATER, James Cook University, Cairns.

Yu, Wusheng, Yao, Tandong, Lewis, Stephen, Tian, Lide, Ma, Yaoming, Xu, Baiqing, and Qu, Dongmei (2014) Stable oxygen isotope differences between the areas to the north and south of Qinling Mountains in China reveal different moisture sources. International Journal of Climatology, 34 (6). pp. 1760-1772.

Lo, Eugenia Y.Y., Duke, Norman C., and Sun, Mei (2014) Phylogeographic pattern of Rhizophora (Rhizophoraceae) reveals the importance of both vicariance and long-distance oceanic dispersal to modern mangrove distribution. BMC Evolutionary Biology, 14. pp. 1-15.

Brodie, Jon (2014) Dredging the Great Barrier Reef: use and misuse of science. Estuarine, Coastal and Shelf Science , 142. pp. 1-3.

Bryant, C.V., and Tasker, Z. (2014) Gladstone Western Basin Post Dredge BPAR Monitoring December 2013 - February 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

O'Brien, Dominique, Davis, Aaron, Nash, Michael, Di Bella, Lawrence, and Brodie, Jon (2014) Herbert water quality monitoring project: 2011–2013 results. In: Proceedings of the Australian Society of Sugar Cane Technologists (36), pp. 205-219. From: ASSCT 2014: 36th Annual Conference of the Australian Society of Sugar Cane Technologists, 28 April - 1 May 2014, Broadbeach, QLD, Australia.

York, P.H., Davies, J.N., and Rasheed, M.A. (2014) Long-term seagrass monitoring in the Port of Mourilyan: 2013. Report. TropWATER, James Cook University, Cairns.

Jarvis, J.C., Rasheed, M.A., McKenna, S.A., and Sankey, T. (2014) Seagrass habitat of Cairns Harbour and Trinity Inlet: annual and quarterly monitoring report 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Blanchette, Melanie L., Davis, Aaron M., Jardine, Timothy D., and Pearson, Richard G. (2014) Omnivory and opportunism characterize food webs in a large dry-tropics river system. Freshwater science, 33 (1). pp. 142-158.

McKenna, S.A., and Rasheed, M.A. (2014) Port of Abbot Point long-term seagrass monitoring: annual report 2012-2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Taylor, H.A., McKenna, S.A., and Rasheed, M.A. (2014) Port of Karumba long-term seagrass monitoring: November 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Welsh, Stuart A., Jerry, Dean R., and Burrows, Damien W. (2014) A new species of freshwater eel-tailed catfish of the genus Tandanus (Teleostei: Plotosidae) from the wet tropics region of Eastern Australia. Copeia, 1. pp. 136-142.

DeBose, Jennifer L., and Paul, Valerie J. (2014) Chemical signatures of multi-species foraging aggregations are attractive to fish. Marine Ecology Progress Series, 498. pp. 243-248.

Petus, Caroline, Marieu, Vincent, Novoa, Stefani, Chust, Guillem, Bruneau, Nicolas, and Froidefond, Jean-Marie (2014) Monitoring spatio-temporal variability of the Adour River turbid plume (Bay of Biscay, France) with MODIS 250-m imagery. Continental Shelf Research, 74. 35 - 49.

Jarvis, Jessie C., Brush, Mark J., and Moore, Kenneth A. (2014) Modeling loss and recovery of Zostera marina beds in the Chesapeake Bay: the role of seedlings and seed-bank viability. Aquatic Botany, 113. pp. 32-45.

McKenna, S.A., and Rasheed, M.A. (2014) Port of Abbot Point proposed dredge footprint: seagrass survey: December 2014. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, J.N., McKenna, S.A., Jarvis, J.C., Carter, A.B., and Rasheed, M.A. (2014) Port of Townsville annual monitoring and baseline survey: October 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Macreadie, Peter I., York, Paul H., and Sherman, Craig D.H. (2014) Resilience of Zostera muelleri seagrass to small-scale disturbances: the relative importance of asexual versus sexual recovery. Ecology and Evolution, 4 (4). pp. 450-461.

Wood, Apanie, Booth, David T., and Limpus, Colin J. (2014) Sun exposure, nest temperature and loggerhead turtle hatchlings: implications for beach shading management strategies at sea turtle rookeries. Journal of Experimental Marine Biology and Ecology, 451. pp. 105-114.

Bartley, Rebecca, Bainbridge, Zoe T., Lewis, Stephen E., Kroon, Frederieke J., Wilkinson, Scott N., Brodie, Jon E., and Silburn, D. Mark (2014) Relating sediment impacts on coral reefs to watershed sources, processes and management: a review. Science of the Total Environment, 468-469. pp. 1138-1153.

Oliver, Danielle P., Anderson, Jenny S., Davis, Aaron, Lewis, Stephen, Brodie, Jon, and Kookana, Rai (2014) Banded applications are highly effective in minimising herbicide migration from furrow-irrigated sugar cane. Science of the Total Environment, 466-467. pp. 841-848.

Thomas, Christopher J., Lambrechts, Jonathan, Wolanski, Eric, Traag, Vincent A, Blondel, Vincent D, Deleersnijder, Eric, and Hanert, Emmanuel (2014) Numerical modelling and graph theory tools to study ecological connectivity in the Great Barrier Reef. Ecological Modelling, 272. pp. 160-174.

Taylor, H.A., Rasheed, M.A., Carter, A.B., and McKenna, S.A. (2014) Port of Weipa long-term seagrass monitoring: September 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

McKenzie, Len (2014) Australian pastures of the sea. Wildlife Australia, 51 (1). pp. 18-21.

Farrington, Lachlan W., Lintermans, Mark, and Ebner, Brendan C. (2014) Characterising genetic diversity and effective population size in one reservoir and two riverine populations of the threatened Macquarie perch. Conservation Genetics, 15 (3). pp. 707-716.

Hilbert, David W., Hill, Rosemary, Moran, Catherine, Turton, Stephen M., Bohnet, Iris C., Marshall, Nadine A., Pert, Petina L., Stoeckl, Natalie, Murphy, Helen T., Reside, April E., Laurance, Susan G.W., Alamgir, Mohammed, Coles, Rob, Crowley, Gabriel, Curnock, Matt, Dale, Allan, Duke, Norman C., Esparon, Michelle, Farr, Marina, Gillet, Sarah, Gooch, Margaret, Fuentes, Mariana, Hamann, Mark, James, Cassandra S., Kroon, Frederieke J., Larson, Silva, Lyons, Pethie, Marsh, Helene, Meyer Steiger, Dagmar, Sheaves, Marcus, and Westcott, David (2014) Climate change issues and impacts in the Wet Tropics NRM cluster region. Report. James Cook University, Cairns, QLD, Australia.

Spalding, Mark D., McIvor, Anna L., Beck, Michael W., Koch, Evamaria W., Möller, Iris, Reed, Denise J., Rubinoff, Pamela, Spencer, Thomas, Tolhurst, Trevor J., Wamsley, Ty V., van Wesenbeeck, Bregje K., Wolanski, Eric, and Woodroffe, Colin D. (2014) Coastal ecosystems: a critical element of risk reduction. Conservation Letters, 7 (3). pp. 293-301.

Lewis, Stephen E., Olley, Jon, Furuichi, Takahisa, Sharma, Ashneel, and Burton, Joanne (2014) Complex sediment deposition history on a wide continental shelf: implications for the calculation of accumulation rates on the Great Barrier Reef. Earth and Planetary Science Letters, 393 (1). pp. 146-158.

Rasheed, Michael A., McKenna, Skye A., Carter, Alexandra B., and Coles, Robert G. (2014) Contrasting recovery of shallow and deep water seagrass communities following climate associated losses in tropical north Queensland, Australia. Marine Pollution Bulletin, 83. pp. 491-499.

Carter, Alex, and Rasheed, Michael (2014) Critical marine habitats in high risk areas, South Warden Reef to Howick Group region: 2013 atlas. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Schliep, M., Rasheed, M., Bryant, C., Chartrand, K., York, P., Petrou, K., and Ralph, P. (2014) Development of a molecular biology toolkit to monitor dredging-related stress in Zostera muelleri ssp. capricorni in the Port of Gladstone: interim report. Report. James Cook University, Cairns, QLD, Australia.

Carter, Alex B., Davies, Campbell R., Mapstone, Bruce D., Russ, Garry R., Tobin, Andrew J., and Williams, Ashley J. (2014) Effects of region, demography, and protection from fishing on batch fecundity of common coral trout (Plectropomus leopardus). Coral Reefs, 33 (3). pp. 751-763.

Ebner, Brendan C., Starrs, Danswell, Morgan, David L., Fulton, Christopher J., Donaldson, James A., Doody, J. Sean, Cousins, Stephen, Kennard, Mark, Butler, Gavin, Tonkin, Zeb, Beatty, Stephen, Broadhurst, Ben, Clear, Rhian, Lintermans, Mark, and Fletcher, Cameron S. (2014) Emergence of field-based underwater video for understanding the ecology of freshwater fishes and crustaceans in Australia. Journal of the Royal Society of Western Australia, 97. pp. 287-296.

Jerry, Dean, Noble, Tansyn, Robson, Heather, and Burrows, Damien (2014) Environmental DNA (eDNA) survey of Tilapia in the lower Pioneer catchment. Report. James Cook University, Townsville, QLD, Australia.

Jerry, Dean, Noble, Tansyn, Robson, Heather, and Burrows, Damien (2014) Environmental DNA (eDNA) survey of Tilapia infestations in the Fitzroy River Basin. Report. James Cook University, Townsville, QLD, Australia.

Noble, Tansyn, Robson, Heather, Burrows, Damien, and Jerry, Dean (2014) Environmental DNA (eDNA) survey of the Tilapia in the Fitzroy Basin. Report. James Cook University, Townsville, QLD, Australia.

Wolanski, Eric (2014) Estuaries of Australia in 2050 and Beyond. Estuaries of the World . Springer, Dordrecht, The Netherlands.

Davis, Aaron M., Unmack, Peter J., Pusey, Bradley J., Pearson, Richard G., and Morgan, David L. (2014) Evidence for a multi-peak adaptive landscape in the evolution of trophic morphology in terapontid fishes. Biological Journal of the Linnean Society, 113 (2). pp. 623-634.

Lough, J.M., Llewellyn, L.E., Lewis, S.E., Turney, C.S.M., Palmer, J.G., Cook, C.G., and Hogg, A.G. (2014) Evidence for suppressed mid-Holocene northeastern Australian monsoon variability from coral luminescence. Paleoceanography, 29 (6). pp. 581-594.

Arthington, A.H., Rolls, R.J., Sternberg, D., Mackay, S.J., and James, C.S. (2014) Fish assemblages in subtropical rivers: low-flow hydrology dominates hydro-ecological relationships. Hydrological Sciences Journal, 59 (3-4). pp. 594-604.

Waltham, Nathan J., Hughes, Jane M., and Davie, Peter J.F. (2014) Freshwater crabs occupying tropical north Queensland coastal creeks. Australian Zoologist, 37 (2). pp. 256-262.

Bartley, Rebecca, Bainbridge, Zoe T., Lewis, Stephen E., Kroon, Frederieke J., Wilkinson, Scott N., Brodie, Jon E., and Silburn, Mark D. (2014) From coral to cows: using ecosystem processes to inform catchment management of the Great Barrier Reef. In: Proceedings of the 7th Australian Stream Management Conference, pp. 9-16. From: 7th Australian Stream Management Conference: catchment to coast, 27-30 July 2014, Townsville, QLD, Australia.

Bryant, Catherine, Jarvis, Jessie, York, Paul, and Rasheed, Michael (2014) Gladstone Healthy Harbour Partnership Pilot Report Card. ISP011: seagrass final report. Report. TropWATER, Cairns, QLD, Australia.

Dunn, Ryan J.K., Waltham, Nathan J., Benfer, Nathan P., King, Brian A., Lemckert, Charles J., and Zigic, Sasha (2014) Gold Coast Broadwater: southern Moreton Bay, Southeast Queensland (Australia). In: Wolanski, Eric, (ed.) Estuaries of Australia in 2050 and Beyond. Estuaries of the World . Springer, Dordrecht, The Netherlands, pp. 93-110.

Stieglitz, Thomas (2014) Groundwater-ocean interaction and its effects on coastal ecological processes: are there groundwater-dependant ecosystems in the coastal zone? In: Abstracts from Goldschmidt 2014, p. 2385. From: Goldschmidt 2014 Conference, 8-13 June 2014 , Sacramento, CA, USA.

Hilbert, David W., Hill, Rosemary, Moran, Catherine, Turton, Steve M., Bohnet, Iris C., Marshall, Nadine A., Pert, Petina L., Stoeckl, Natalie, Murphy, Helen T., Reside, April E., Laurance, Susan G.W., Alamgir, Mohammed, Coles, Rob, Crowley, Gabriel, Curnock, Matthew, Dale, Allan, Duke, Norman C., Esparon, Michelle, Farr, Marina, Gillet, Sarah, Gooch, Margaret, Fuentes, Marianna, Hamann, Mark, James, Cassandra S., Kroon, Frederieke J., Larson, Silva, Lyons, Pethie, Marsh, Helene, Meyer Steiger, Dagmar, Sheaves, Marcus, and Westcott, David A. (2014) Key messages extracted from the Synthesis of Climate Change Issues and Impacts in the Wet Tropics NRM Cluster Region. Report. James Cook University, Cairns, QLD, Australia.

Bryant, C., Davies, J., Sankey, T., Jarvis, J., and Rasheed, M. (2014) Long Term Seagrass Monitoring in Port Curtis: quarterly seagrass assessments & permanent transect monitoring progress report 2009 to 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Starrs, D., Ebner, B.C., Eggins, S.M., and Fulton, C.J. (2014) Longevity in maternal transmission of isotopic marks in a tropical freshwater rainbowfish and the implications for offspring morphology. Marine and Freshwater Research, 65 (5). pp. 400-408.

Starrs, Danswell, Davis, Jacqueline T., Schlaefer, Jodie, Ebner, Brendan C., Eggins, Stephen, and Fulton, Christopher J. (2014) Maternally transmitted isotopes and their effects on larval fish: a validation of dual isotopic marks within a meta-analysis context. Canadian Journal of Fisheries and Aquatic Sciences, 71 (3). pp. 387-397.

Macreadie, P.I., Schliep, M.T., Rasheed, M.A., Chartrand, K.M., and Ralph, P.J. (2014) Molecular indicators of chronic seagrass stress: A new era in the management of seagrass ecosystems? Ecological Indicators, 38. pp. 279-281.

Macreadie, Peter I., York, Paul H., Sherman, Craig D.H., Keough, Michael J., Ross, D. Jeff, Ricart, Aurora M., and Smith, Timothy M. (2014) No detectable impact of small‑scale disturbances on 'blue carbon' within seagrass beds. Marine Biology, 161 (12). pp. 2939-2944.

Burns, Kathryn A. (2014) PAHs in the Great Barrier Reef Lagoon reach potentially toxic levels from coal port activities. Estuarine, Coastal and Shelf Science , 144. pp. 39-45.

McJannet, David, Marvanek, Steve, Kinsey-Henderson, Anne, Petheram, Cuan, and Wallace, Jim (2014) Persistence of in-stream waterholes in ephemeral rivers of tropical northern Australia and potential impacts of climate change. Marine and Freshwater Research, 65. pp. 1131-1144.

Carter, A.B., Russ, G.R., Tobin, A.J., Williams, A.J., Davies, C.R., and Mapstone, B.D. (2014) Spatial variation in the effects of size and age on reproductive dynamics of common coral trout Plectropomus leopardus. Journal of Fish Biology, 84 (4). pp. 1074-1098.

Edelman, Alexandra, Gelding, Andrea, Konovalov, Elena, McComiskie, Rodney, Penny, Anne, Roberts, Nicholas, Templeman, Shelley, Trewin, Dennis, Ziembicki, Mark, Trewin, Blair, Cortlet, Richard, Hemingway, Janet, Isaac, Joanne, and Turton, Steve (2014) State of the Tropics 2014 report. Report. James Cook University, Cairns.

Sawyer, Audrey H., Lazareva, Olesya, Kroeger, Devin D., Crespo, Kyle, Chan, Clara S., Stieglitz, Thomas, and Michael, Holly A. (2014) Stratigraphic controls on fluid and solute fluxes across the sediment–water interface of an estuary. Limnology and Oceanography, 59 (3). pp. 997-1010.

Flint, Nicole, Crossland, Michael R., and Pearson, Richard G. (2014) Sublethal effects of fluctuating hypoxia on juvenile tropical Australian freshwater fish. Marine and Freshwater Research, 66 (4). pp. 293-304.

Venter, Oscar, Fuller, Richard A., Segan, Daniel B., Carwardine, Josie, Brooks, Thomas, Butchart, Stuart H.M., Di Marco, Moreno, Iwamura, Takuya, Joseph, Liana, O'Grady, Damien, Possingham, Hugh P., Rondinini, Carlo, Smith, Robert J., Venter, Michelle, and Watson, James E.M. (2014) Targeting global protected area expansion for imperiled biodiversity. PLoS Biology, 12 (6). pp. 1-7.

Coles, Rob, Short, Fred, Miguel, Fortes, and Kuo, John (2014) Twenty years of seagrass networking and advancing seagrass science: the International Seagrass Biology Workshop Series. Pacific Conservation Biology, 20 (1). pp. 8-16.

Waltham, Nathan J., Reichelt-Brushett, Amanda, McCann, Damian, and Eyre, Bradley D. (2014) Water and sediment quality, nutrient biochemistry and pollution loads in an urban freshwater lake: balancing human and ecological services. Environmental Science Processes and Impacts, 16 (12). pp. 2804-2813.

Waltham, Nathan J., Burrows, Damien, Butler, Barry, and Wallace, Jim (2014) Water quality and fish refugia in riverine waterholes in northern Queensland potentially subject to irrigation development. In: Proceedings of the 7th Australian Stream Management Conference, pp. 150-155. From: 7th Australian Stream Management Conference: catchment to coast, 27-30 July 2014, Townsville, QLD, Australia.

Davis, Aaron M., Lewis, Stephen E., O'Brien, Dominique S., Bainbridge, Zoë T., Bentley, Christie, Mueller, Jochen F., and Brodie, Jon E. (2014) Water resource development and high value coastal wetlands on the lower Burdekin floodplain, Australia. In: Wolanski, Eric, (ed.) Estuaries of Australia in 2050 and Beyond. Estuaries of the World . Springer, Dordrecht, The Netherlands, pp. 223-246.

Fisher, Diana O., Johnson, Chris N., Lawes, Michael J., Fritz, Susanne A., McCallum, Hamish, Blomberg, Simon P., VanDerWal, Jeremy, Abbott, Brett, Frank, Anke, Legge, Sarah, Letnic, Mike, Thomas, Colette R., Fisher, Alaric, Gordon, Iain J., and Kutt, Alex (2014) The current decline of tropical marsupials in Australia: is history repeating? Global Ecology and Biogeography , 23 (2). pp. 181-190.

Carter, Alex, Taylor, Helen, McKenna, Skye, York, Paul, and Rasheed, Michael (2014) The effect of climate on seagass in the Torres Strait: 2011-2014. Report. TropWATER, Cairns, QLD, Australia.

Duke, Norman, Nagelkerken, Ivan, Agardy, Tundi, Wells, Sue, and Van Lavieren, Hanneke (2014) The importance of mangroves to people: a call to action. Report. United Nations Environment Programme World Conservation Monitoring Centre (UNEP-WCMC), Cambridge, UK.

Bryant, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report December 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Calver, Michael C., Beatty, Stephen J., Bryant, Kate A., Dickman, Christopher R., Ebner, Brendan C., and Morgan, David L. (2013) Users beware: implications of database errors when assessing the individual research records of ecologists and conservation biologists. Pacific Conservation Biology, 19 (3/4). pp. 320-330.

Ryan, Katie Anne, Lintermans, Mark, Ebner, Brendan C., and Norris, Richard (2013) Using fine-scale overlap in predator–prey distribution to assess avian predation risk to a reservoir population of threatened Macquarie Perch. Freshwater Science, 32 (4). pp. 1057-1072.

Davis, A.M., Thorburn, P.J., Lewis, S.E., Bainbridge, Z.T., Attard, S.J., Milla, R., and Brodie, J.E. (2013) Environmental impacts of irrigated sugarcane production: Herbicide run-off dynamics from farms and associated drainage systems. Agriculture, Ecosystems and Environment, 180. pp. 123-135.

King, Juliette, Alexander, Frances, and Brodie, Jon (2013) Regulation of pesticides in Australia: the Great Barrier Reef as a case study for evaluating effectiveness. Agriculture, Ecosystems and Environment, 180. pp. 54-67.

Butler, James R.A., Wong, Grace Y., Metcalfe, Daniel J., Honzák, Miroslav, Pert, Petina L., Rao, Nalini, van Grieken, Martijn E., Lawson, Tina, Bruce, Caroline, Kroon, Frederieke J., and Brodie, Jon E. (2013) An analysis of trade-offs between multiple ecosystem services and stakeholders linked to land use and water quality management in the Great Barrier Reef, Australia. Agriculture, Ecosystems and Environment, 180. pp. 176-191.

Chartrand, K., McCormack, C., Thomas, R., Rasheed, M., and Ralph, P. (2013) Environmental tolerances and drivers of deepwater seagrass change: implications and tools for coastal development management. In: 22nd Biennial Conference of the Coastal and Estuarine Research Federation: abstract book, p. 39. From: CERF2013 Toward Resilient Coasts and Estuaries, Science for Sustainable Solutions, 3-7 November 2013, San Diego, California.

Bryant, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report November 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Petus, Caroline, Lewis, Megan, and White, Davina (2013) Monitoring temporal dynamics of Great Artesian Basin wetland vegetation, Australia, using MODIS NDVI. Ecological Indicators, 34. pp. 41-52.

Berry, Kathryn L.E., Seemann, Janina, Dellwig, Olaf, Struck, Ulrich, Wild, Christian, and Leinfelder, Reinhold R. (2013) Sources and spatial distribution of heavy metals in scleractinian coral tissues and sediments from the Bocas del Toro Archipelago, Panama. Environmental Monitoring and Assessment, 185 (11). pp. 9089-9099.

Wood, Apanie L., Butler, James R.A., Sheaves, Marcus, and Wani, Jacob (2013) Sport fisheries: opportunities and challenges for diversifying coastal livelihoods in the Pacific. Marine Policy, 42. pp. 305-314.

Devlin, Michelle J., da Silva, Eduardo Teixeira, Petus, Caroline, Wenger, Amelia, Zeh, Daniel, Tracey, Dieter, Álvarez-Romero, Jorge G., and Brodie, Jon (2013) Combining in-situ water quality and remotely sensed data across spatial and temporal scales to measure variability in wet season chlorophyll-a: Great Barrier Reef lagoon (Queensland, Australia). Ecological Processes, 2. pp. 1-22.

Dunn, Ryan J.K., Robertson, David, Teasdale, Peter R., Waltham, Nathan J., and Welsh, David T. (2013) Benthic metabolism and nitrogen dynamics in an urbanised tidal creek: domination of DNRA over denitrificDunnation as a nitrate reduction pathway. Estuarine, Coastal and Shelf Science , 131. pp. 271-281.

York, Paul H., Gruber, Renee K., Hill, Ross, Ralph, Peter J., Booth, David J., and Macreadie, Peter I. (2013) Physiological and morphological responses of the temperate seagrass Zostera muelleri to multiple stressors: investigating the interactive effects of light and temperature. PLoS ONE, 8 (10). pp. 1-12.

Davies, Jaclyn, Bryant, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report October 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Grech, A., Bos, M., Brodie, J., Coles, R., Dale, A., Gilbert, R., Hamann, M., Marsh, H., Neil, K., Pressey, R.L., Rasheed, M.A., Sheaves, M., and Smith, A. (2013) Guiding principles for the improved governance of port and shipping impacts in the Great Barrier Reef. Marine Pollution Bulletin, 75 (1). pp. 8-20.

Jarvis, J.C., McKenna, S.A., and Rasheed, M.A. (2013) Seagrass habitat of Cairns Harbour and Trinity Inlet: sediment seed bank analysis. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Taylor, H.A., Carter, A.B., Davies, J.N., McKenna, S.A., Reason, C.L., and Rasheed, M.A. (2013) Seagrass productivity, resilience to climate change and capacity for recovery in the Torres Strait: 2011-2013 report. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Thiem, Jason D., Broadhurst, Ben T., Lintermans, Mark, Ebner, Brendan C., Clear, Rhian C., and Wright, Daniel (2013) Seasonal differences in the diel movements of Macquarie perch (Macquaria australasica) in an upland reservoir. Ecology of Freshwater Fish, 22 (1). pp. 145-156.

McKenna, S.A., Rasheed, M.A., Lewis, S.E., Tol, S.J., and Sankey, T. (2013) Abbot Point proposed dredge disposal areas: benthic habitat survey: 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Mallela, Jennie, Lewis, Stephen E., and Croke, Barry (2013) Coral skeletons provide historical evidence of phosphorus runoff on the Great Barrier Reef. PLoS ONE, 8 (9). pp. 1-10.

Bryant, Catherine, Amies, Rachel, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: September 2013 update report. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Reeves, Jessica M., Bostock, Helen C., Ayliffe, Linda K. , Barrows, Timothy T., De Deckker, Patrick, Devriendt, Laurent S., Dunbar, Gavin B., Drysdale, Russell N., Fitzsimmons, Kathryn E., Gagan, Michael K., Griffiths, Michael L., Haberle, Simon G., Jansen, John D., Krause, Claire, Lewis, Stephen, McGregor, Helen V. , Mooney, Scott D., Moss, Patrick, Nanson, Gerald C., Purcell, Anthony, and van der Kaars, Sander (2013) Palaeoenvironmental change in tropical Australasia over the last 30,000 years: a synthesis by the OZ-INTIMATE group. Quaternary Science Reviews, 74. pp. 97-114.

Wolanski, Eric, Lambrechts, Jonathan, Thomas, Christopher, and Deleersnijder, Eric (2013) The net water circulation through Torres strait. Continental Shelf Research, 64. pp. 66-74.

McKenna, S.A., Rasheed, M.A., Sankey, T., and Tol, S.J. (2013) Benthic macro-invertebrates of Cairns Harbour and Trinity Inlet: survey: 2012/13. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Wallace, Jim, Macfarlane, Craig, McJannet, Dave, Ellis, Tim, Grigg, Andrew, and van Dijk, Albert (2013) Evaluation of forest interception estimation in the continental scale Australian Water Resources Assessment – Landscape (AWRA-L) model. Journal of Hydrology, 499. pp. 210-223.

Amies, Rachel, Bryant, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report August 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Lewis, Stephen E., Sloss, Craig R., Murray-Wallace, Colin V., Woodroffe, Colin D., and Smithers, Scott G. (2013) Post-glacial sea-level changes around the Australian margin: a review. Quaternary Science Reviews, 74. pp. 115-138.

Starrs, D., Ebner, B.C., and Fulton, C.J. (2013) Can backcalculation models unravel complex larval growth histories in a tropical freshwater fish? Journal of Fish Biology, 83 (1). pp. 96-110.

Amies, R.L., McCormack, C.V., and Rasheed, M.A. (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report July 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, McCormack, Catherine, McKenna, Skye, Taylor, Helen, and Rasheed, Michael (2013) Productive capacities of tropical seagrasses communities at three locations along the East Coast of Queensland and their potential for carbon sequestration. In: 50th Australian Marine Sciences Association annual conference: shaping the future: abstracts, p. 108. From: AMSA 2013 Shaping the Future: 50th Annual Conference of the Australian Marine Sciences Association, 1-7 July 2013, Gold Coast, Queensland.

Taylor, H.A., Rasheed, M.A., McKenna, S.A., Carter, A.B., Reason, C.L., and Loban, F. (2013) Seagrass productivity, resilience to climate change and capacity for recovery in the Torres Strait: 2011-2012 report. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Foden, Wendy B., Butchart, Stuart H.M., Stuart, Simon N., Vié, Jean-Christophe, Akçakaya, H. Resit, Angulo, Ariadne, DeVantier, Lyndon M., Gutsche, Alexander, Turak, Emre, Cao, Long, Donner, Simon D., Katariya, Vineet, Bernard, Rodolphe, Holland, Robert A., Hughes, Adrian F., O'Hanlon, Susannah E., Garnett, Stephen T., Şekercioǧlu, Çagan H., and Mace, Georgina M. (2013) Identifying the world's most climate change vulnerable species: a systematic trait-based assessment of all birds, amphibians and corals. PLoS ONE, 8 (6). pp. 1-13.

Amies, R.L., McCormack, C.V., and Rasheed, M.A. (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report June 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Wenger, A.S., McCormick, M.I., McLeod, I.M., and Jones, G.P. (2013) Suspended sediment alters predator–prey interactions between two coral reef fishes. Coral Reefs, 32 (2). pp. 369-374.

Cooke, Steven J., Midwood, Jonathan D., Thiem, Jason D., Klimley, Peter, Lucas, Martin C., Thorstad, Eva B., Eiler, John, Holbrook, Chris, and Ebner, Brendan C. (2013) Tracking animals in freshwater with electronic tags: past, present and future. Animal Biotelemetry, 1 (May). pp. 1-19.

Amies, Rachel, McCormack, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report May 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, J.D., McCormack, C.V., and Rasheed, M.A. (2013) Port Curtis and Rodds Bay Seagrass Monitoring Program. Biannual western basin & annual long term monitoring November 2012. Report. TropWATER, James Cook University, Cairns.

Rasheed, M.A., McKenna, S.A., and Tol, S. (2013) Seagrass habitat of Cairns Harbour and Trinity Inlet: annual monitoring and updated baseline survey. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Ebner, B.C., and Morgan, D.L. (2013) Using remote underwater video to estimate freshwater fish species richness. Journal of Fish Biology, 82 (5). pp. 1592-1612.

Waltham, Nathan J., Teasdale, Peter R., and Connolly, Rod M. (2013) Use of flathead mullet (Mugil cephalus) in coastal biomonitor studies: review and recommendations for future studies. Marine Pollution Bulletin, 69 (1-2). pp. 195-205.

Alvarez-Romero, Jorge G., Devlin, Michelle, da Silva, Eduardo Teixeira, Petus, Caroline, Ban, Natalie C., Pressey, Robert L., Kool, Johnathan, Roberts, Jason J., Cerdeira-Estrada, Sergio, Wenger, Amelia S., and Brodie, Jon (2013) A novel approach to model exposure of coastal-marine ecosystems to riverine flood plumes based on remote sensing techniques. Journal of Environmental Management, 119. pp. 194-207.

Amies, Rachel, McCormack, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report April 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

McKenna, S.A., and Rasheed, M.A. (2013) Long-term seagrass monitoring in the Port of Mourilyan: 2012. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Pearson, R.G., Godfrey, P.C., Arthington, A.H., Wallace, J., Karim, F., and Ellison, M. (2013) Biophysical status of remnant freshwater floodplain lagoons in the Great Barrier Reef catchment: a challenge for assessment and monitoring. Marine and Freshwater Research, 64 (3). pp. 208-222.

Amies, Rachel, McCormack, Catherine, and Rasheed, Michael (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report March 2013. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

McCormack, Catherine, Rasheed, Michael, Davies, Jaclyn, Carter, Alexandra, Sankey, Tonia, and Tol, Samantha (2013) Long term seagrass monitoring in the Port Curtis western basin: quarterly seagrass assessments & permanent transect monitoring progress report: November 2009 to November 2012. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

McKenna, S.A., and Rasheed, M.A. (2013) Port of Karumba long-term seagrass monitoring: October 2012. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, McKenna, Skye, and Rasheed, Michael (2013) Port of Townsville long-term seagrass monitoring: September 2012. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, A.B., McKenna, S.A., and Rasheed, M.A. (2013) Port of Weipa long‐term seagrass monitoring: August 2012. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

DeBose, J.L., Nuttall, M.F., Hickerson, E.L., and Schmahl, G.P. (2013) A high-latitude coral community with an uncertain future: Stetson Bank, northwestern Gulf of Mexico. Coral Reefs, 32 (1). pp. 225-267.

Lewis, Stephen E., Bainbridge, Zöe T., Kuhnert, Petra M., Sherman, Bradford S., Henderson, Brent, Dougall, Cameron, Cooper, Michelle, and Brodie, Jon E. (2013) Calculating sediment trapping efficiencies for reservoirs in tropical settings: a case study from the Burdekin Falls Dam, NE Australia. Water Resources Research, 49 (2). pp. 1017-1029.

Davis, Aaron M., Unmack, Peter. J., Pusey, Bradley J., Pearson, Richard G., and Morgan, David L. (2013) Ontogenetic development of intestinal length and relationships to diet in an Australasian fish family (Terapontidae). BMC Evolutionary Biology, 13. pp. 1-16.

Donaldson, James A., Ebner, Brendan C., and Fulton, Christopher J. (2013) Flow velocity underpins microhabitat selection by gobies of the Australian Wet Tropics. Freshwater Biology, 58 (5). pp. 1038-1051.

Wallace, Jim, and McJannet, Dave (2013) How might Australian rainforest cloud interception respond to climate change? Journal of Hydrology, 481. pp. 85-95.

Amies, R.L., Davies, J.D., McCormack, C.V., and Rasheed, M.A. (2013) Gladstone Permanent Transect Seagrass Monitoring: monthly report February 2013. Report. Centre for Tropical Water and Aquatic Ecosystem Research, James Cook University, Cairns, QLD, Australia.

Tsatsaros, Julie, Brodie, Jon E., Bohnet, Iris C., and Valentine, Peter (2013) Water quality degradation of coastal waterways in the Wet Tropics, Australia. Water, Air and Soil Pollution, 224. pp. 1-22.

Davies, J.D., McCormack, C.V., and Rasheed, M.A. (2013) Gladstone Permanent Transect Seagrass Monitoring: January 2013 update report. Report. Centre for Tropical Water and Aquatic Ecosystem Research, James Cook University, Cairns, QLD, Australia.

McKenna, S.A., and Rasheed, M.A. (2013) Port of Abbot Point long-term seagrass monitoring: annual report 2011-2012. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Waltham, Nathan J., and Connolly, Rod M. (2013) Artificial tidal lakes: built for humans, home for fish. Ecological Engineering, 60. pp. 414-420.

Carter, Alex, Taylor, Helen, McKenna, Skye, and Rasheed, Michael (2013) Critical marine habitats in high risk areas, Torres Strait: Seo Reef to Kai-Wareg Reef: 2013 atlas. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alex, and Rasheed, Michael (2013) Critical marine habitats in high risk areas: Bathurst Bay region: 2012 atlas. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

McCormack, C.V., Sankey, T.L., and Rasheed, M.A. (2013) Gladstone Permanent Transect Seagrass Monitoring: December 2012 update report. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

James, Cassandra, Vanderwal, Jeremy, Capon, Samantha, Hodgson, Lauren, Waltham, Nathan, Ward, Doug, Anderson, Barbara, and Pearson, Richard (2013) Identifying Climate Refuges for Freshwater Biodiversity Across Australia: identification and characterisation of freshwater refuges in the face of climate change. National Climate Change Adaptation Research Facility, Gold Coast, QLD, Australia.

Stieglitz, Thomas C., and Waterson, Paddy (2013) Impact of Cyclone Yasi on the wreck of the SS Yongala documented by comparative multibeam bathymetry analysis. Queensland Archaeological Research, 16. pp. 33-44.

Stieglitz, Thomas C., van Beek, Pieter, Souhaut, Marc, and Cook, Peter G. (2013) Karstic groundwater discharge and seawater recirculation through sediments in shallow coastal Mediterranean lagoons, determined from water, salt and radon budgets. Marine Chemistry, 156. pp. 73-84.

McKenna, Skye, Rasheed, Michael, Carter, Alexandra, and McCormack, Catherine (2013) Long-term effects of major climatic events on the resilience and capacity for recovery of a tropical seagrass habitat. In: Abstracts from the 50th Australian Marine Science Association Annual Conference, p. 169. From: AMSA 2013: 50th Australian Marine Science Association Annual Conference, 7-11 July 2013, Gold Coast, QLD, Australia.

Devlin, Michelle, Petus, Caroline, da Silva, Eduardo Teixera, Alvarez-Romero, Jorge, Zeh, Daniel, Waterhouse, Jane, and Brodie, Jon (2013) Mapping of exposure to flood plumes, water types and exposure to pollutants (DIN, TSS) in the Great Barrier Reef: toward the production of operational risk maps for the world's most iconic marine ecosystem. Report Section. James Cook University, Townsville, QLD.

Schneider, Philip A., Wallace, James W., and Tickle, Julian C. (2013) Modelling and dynamic simulation of struvite precipitation from source-separated urine. Water Science and Technology, 67 (12). pp. 2724-2732.

Wilson, James G., and Devlin, Michelle (2013) Nutrients, food web and tropho-dynamic processes. Estuarine, Coastal and Shelf Science , 135. pp. 1-4.

Petrou, K., Jimenez-Denness, I., Chartrand, K., McCormack, C., Rasheed, Michael, and Ralph, P. J. (2013) Seasonal heterogeneity in the photophysiological response to air exposure in two tropical intertidal seagrass species. Marine Ecology Progress Series, 482. pp. 93-106.

Augé, Amélie A., Maughan, Mirjam, Pressey, Robert L., Brodie, Jon, Dale, Allan, and Yorkston, Hugh (2013) Spatially explicit scenarios for conservation planning in the Great Barrier Reef coastal zone, Australia. In: Proceedings of the CoastGIS Conference 2013: monitoring and adapting to change on the coast, pp. 179-182. From: CoastGIS 2013: 11th International Symposium for GIS and Computer Cartography for Coastal Zone Management, 18-21 June 2013, Victoria, BC, Canada.

Xu, Hao, Wolanski, Eric, and Chen, Zhongyuan (2013) Suspended particulate matter affects the nutrient budget of turbid estuaries: modification of the LOICZ model and application to the Yangtze Estuary. Estuarine, Coastal and Shelf Science , 127. pp. 59-62.

Barnett, Adam, Yick, Jonah L., Abrantes, Kátya G., and Awruch, Cynthia A. (2013) Trophic ecology of an abundant predator and its relationship with fisheries. Marine Ecology Progress Series, 494. pp. 241-248.

Salmo, Severino G., Lovelock, Catherine, and Duke, Norman C. (2013) Vegetation and soil characteristics as indicators of restoration trajectories in restored mangroves. Hydrobiologia, 720 (1). pp. 1-18.

O'Brien, Dominique, Davis, Aaron, Nash, Michael, Di Bella, Lawrence, Turner, Ryan, Reghenzani, John, and Brodie, Jon (2013) Water quality within the Herbert River Catchment associated with specific land use. In: Proceedings of the 35th Conference of the Australian Society of Sugar Cane Technologists, pp. 1-14. From: 35th Conference of the Australian Society of Sugar Cane Technologists, 16-18 April 2013, Townsville, QLD, Australia.

Stieglitz, Thomas C., Clarke, Jordan F., and Hancock, Gary J. (2013) The mangrove pump: the tidal flushing of animal burrows in a tropical mangrove forest determined from radionuclide budgets. Geochimica et Cosmochimica Acta, 102. pp. 12-22.

Dale, Allan, Vella, Karen, Pressey, Robert L., Brodie, Jon, Yorkston, Hugh, and Potts, Ruth (2013) A method for risk analysis across governance systems: a Great Barrier Reef case study. Environmental Research Letters, 8 (1). pp. 1-16.

Nguyen, Hai-Hoa , McAlpine, Clive, Pullar, David, Johansen, Kasper, and Duke, Norman C. (2013) The relationship of spatial-temporal changes in fringe mangrove extent and adjacent land-use: case study of Kien Giang coast, Vietnam. Ocean & Coastal Management, 76. pp. 12-22.

Alquezar, Ralph, Glendenning, Lionel, and Costanzo, Simon (2013) The use of the brown macroalgae, Sargassum flavicans, as a potential bioindicator of industrial nutrient enrichment. Marine Pollution Bulletin, 77 (1-2). pp. 140-146.

Wallace, James, and McJannet, Dave (2012) Climate change impacts on the water balance of coastal and montane rainforests in northern Queensland, Australia. Journal of Hydrology, 475. pp. 84-96.

Dunn, Ryan J.K., Welsh, David T., Jordan, Mark A., Waltham, Nathan J., Lemckert, Charles J., and Teasdale, Peter R. (2012) Benthic metabolism and nitrogen dynamics in a sub-tropical coastal lagoon: microphytobenthos stimulate nitrification and nitrate reduction through photosynthetic oxygen evolution. Estuarine, Coastal and Shelf Science , 113. pp. 272-282.

Fulton, Christopher J., Starrs, Danswell, Ruibal, Monica P., and Ebner, Brendan C. (2012) Counting crayfish: active searching and baited cameras trump conventional hoop netting in detecting Euastacus armatus. Endangered Species Research, 19 (1). pp. 39-45.

Perna, C.N., Cappo, M., Pusey, B.J., Burrows, D.W., and Pearson, R.G. (2012) Removal of aquatic weeds greatly enhances fish community richness and diversity: an example from the Burdekin River floodplain, tropical Australia. River Research and Applications, 28 (8). pp. 1093-1104.

Broadhurst, Ben T., Lintermans, Mark, Thiem, Jason D., Ebner, Brendan C., Wright, Daniel W., and Clear, Rhian C. (2012) Spatial ecology and habitat use of two-spined blackfish Gadopsis bispinosus in an upland reservoir. Aquatic Ecology, 46 (3). pp. 297-309.

Davis, A.M., Unmack, P.J., Pusey, B.J., Johnson, J.B., and Pearson, R.G. (2012) Marine-freshwater transitions are associated with the evolution of dietary diversification in terapontid grunters (Teleostei: Terapontidae). Journal of Evolutionary Biology, 25 (6). pp. 1163-1179.

Lewis, Stephen E., Wust, Raphael A.J., Webster, Jody M., Shields, Graham A., Renema, Willem, Lough, Janice M., and Jacobsen, Geraldine (2012) Development of an inshore fringing coral reef using textural, compositional and stratigraphic data from Magnetic Island, Great Barrier Reef, Australia. Marine Geology, 299-302. pp. 18-32.

Davis, Aaron M., Pusey, Bradley J., and Pearson, Richard G. (2012) Contrasting intraspecific dietary shifts in two terapontid assemblages from Australia's wet-dry tropics. Ecology of Freshwater Fish, 21 (1). pp. 42-56.

Lewis, Stephen E., Schaffelke, Britta, Shaw, Melanie, Bainbridge, Zoë T., Rohde, Ken W., Kennedy, Karen, Davis, Aaron M., Masters, Bronwyn L., Devlin, Michelle J., Mueller, Jochen F., and Brodie, Jon E. (2012) Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef. Marine Pollution Bulletin, 65 (4-9). pp. 280-291.

Ridd, Peter V., Larcombe, Piers, Stieglitz, Thomas, and Orpin, Alan (2012) Comment on "Towards ecologically relevant targets for river pollutant loads to the Great Barrier Reef" by F.J. Kroon, Marine Pollution Bulletin 65 (4-9) 261-266. Marine Pollution Bulletin. pp. 1-4.

Davis, Aaron M., Lewis, Stephen E., Bainbridge, Zoë T., Glendenning, Lionel, Turner, Ryan D.R., and Brodie, Jon E. (2012) Dynamics of herbicide transport and partitioning under event flow conditions in the lower Burdekin region, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 182-193.

Wolanski, Eric, Andutta, Fernando, and Delhez, Eric (2012) Estuarine hydrology. In: Bengtsson, Lars, Herschy, Reginald W., and Fairbridge, Rhodes W., (eds.) Encyclopedia of Lakes and Reservoirs. Encyclopedia of Earth Sciences Series . Springer-Verlag, pp. 238-249.

Devlin, Michelle, Wenger, Amelia, Da Silva, Eduardo, Alvarez Romero, Jorge G., Waterhouse, Jane, and McKenzie, Len (2012) Extreme weather conditions in the Great Barrier Reef: drivers of change? In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Bainbridge, Zoe T., Wolanski, Eric, Alvarez Romero, Jorge, Lewis, Stephen E., and Brodie, Jon E. (2012) Fine sediment and nutrient dynamics related to particle size and floc formation in a Burdekin River flood plume, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 236-248.

Davies, J.N., McCormack, C.V., and Rasheed, M.A. (2012) Gladstone Permanent Transect Seagrass Monitoring: November 2012 update report. Report. Department of Agriculture, Fisheries and Forestry (DAFF), Cairns, QLD, Australia.

Davies, J.N., McCormack, C.V., and Rasheed, M.A. (2012) Gladstone Permanent Transect Seagrass Monitoring: October 2012 update report. Report. Department of Agriculture, Fisheries and Forestry (DAFF), Cairns, QLD, Australia.

Davis, Aaron M., Blanchette, Melanie L., Pusey, Bradley J., Jardine, Tim D., and Pearson, Richard G. (2012) Gut content and stable isotope analyses provide complementary understanding of ontogenetic dietary shifts and trophic relationships among fishes in a tropical river. Freshwater Biology, 57 (10). pp. 2156-2172.

Schroeder, Thomas, Devlin, Michelle J., Brando, Vittorio E., Dekker, Arnold G., Brodie, Jon E., Clementson, Lesley A., and McKinna, Lachlan (2012) Inter-annual variability of wet season freshwater plume extent into the Great Barrier Reef lagoon based on satellite coastal ocean colour observations. Marine Pollution Bulletin, 65 (4-9). pp. 210-223.

Kennedy, Karen, Schroeder, Thomas, Shaw, Melanie, Haynes, David, Lewis, Stephen, Bentley, Christie, Paxman, Chris, Carter, Steve, Brando, Vittorio E., Bartkow, Michael, Hearn, Laurence, and Mueller, Jochen F. (2012) Long term monitoring of photosystem II herbicides: correlation with remotely sensed freshwater extent to monitor changes in the quality of water entering the Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 292-305.

McKenna, Skye, Rasheed, Michael, Carter, Alex, Reason, Carissa, and Taylor, Helen (2012) Long-term effects of flooding events on the resilience and recovery of tropical seagrass habitats. In: [Presented at the 10th International Seagrass Biology Workshop]. From: ISBW10: 10th International Seagrass Biology Workshop, 25-30 November 2012, Armação dos Búzios, Brazil.

Doshi, Amar, Pascoe, Sean, Thébaud, Olivier, Thomas, Colette R., Setiasih, Naneng, Hong, James Tan Chun, True, James, Schuttenberg, Heidi Z., and Heron, Scott F. (2012) Loss of economic value from coral bleaching in S.E. Asia. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Devlin, M.J., McKinna, L.W., Alvarez-Romero, J.G., Petus, C., Abott, B., Harkness, P., and Brodie, J. (2012) Mapping the pollutants in surface riverine flood plume waters in the Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 224-235.

Shaw, C.M., Brodie, J., and Mueller, J.F. (2012) Phytotoxicity induced in isolated zooxanthellae by herbicides extracted from Great Barrier Reef flood waters. Marine Pollution Bulletin, 65 (4-9). pp. 355-362.

Waterhouse, J., Brodie, J., Lewis, S., and Mitchell, A. (2012) Quantifying the sources of pollutants in the Great Barrier Reef catchments and the relative risk to reef ecosystems. Marine Pollution Bulletin, 65 (4-9). pp. 394-406.

Kuhnert, Petra M., Henderson, Brent L., Lewis, Stephen E., Bainbridge, Zoe T., Wilkinson, Scott N., and Brodie, Jon E. (2012) Quantifying total suspended sediment export from the Burdekin River catchment using the loads regression estimator tool. Water Resources Research, 48 (4). pp. 1-18.

Webster, A.J., Bartley, R., Armour, J.D., Brodie, J.E., and Thorburn, P.J. (2012) Reducing dissolved inorganic nitrogen in surface runoff water from sugarcane production systems. Marine Pollution Bulletin, 65 (4-9). pp. 128-135.

Devlin, Michelle, Wenger, Amelia, Waterhouse, Jane, Alvarez-Romero, Jorge, Abbott, Brett, and da Silva, Eduardo Teixeira (2012) Reef Rescue Marine Monitoring Program: flood plume monitoring annual report 2010-11: incorporating results from the Extreme Weather Response Program flood plume monitoring. Report. James Cook University, Townsville, QLD, Australia.

Devlin, Michelle, Wenger, Amelia, Petus, Caroline, da Silva, Eduardo Teixeira, Debose, Jennifer, and Álvarez-Romero, Jorge (2012) Reef Rescue Monitoring Program: final report of JCU activities 2011/12: flood plumes and extreme weather monitoring for the Great Barrier Reef Marine Park Authority. Report. James Cook University, Townsville, QLD, Australia.

Carter, Alex, Mapstone, Bruce, Russ, Garry, Tobin, Andrew, and Williams, Ashley (2012) Reproductive benefits of no-take reserves vary atitudinally for Plectropomus leopardus. In: Abstracts from the 12th International Coral Reef Symposium, pp. 259-260. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Kroon, Frederieke J., Kuhnert, Petra M., Henderson, Brent L., Wilkinson, Scott N., Kinsey-Henderson, Anne, Abbot, Brett, Brodie, Jon E., and Turner, Ryan D.R. (2012) River loads of suspended solids, nitrogen, phosphorus and herbicides delivered to the Great Barrier Reef lagoon. Marine Pollution Bulletin, 65 (4-9). pp. 167-181.

Brodie, J.E., Kroon, F.J., Schaffelke, B., Wolanski, E.C., Lewis, S.E., Devlin, M.J., Bohnet, I.C., Bainbridge, Z.T., Waterhouse, J., and Davis, A.M. (2012) Terrestrial pollutant runoff to the Great Barrier Reef: an update of issues, priorities and management responses. Marine Pollution Bulletin, 65 (4-9). pp. 81-100.

Davis, Aaron M., Pusey, Bradley, and Pearson, Richard G. (2012) Trophic ecology of terapontid fishes (Pisces: Terapontidae): the role of morphology and ontogeny. Marine and Freshwater Research, 63 (2). pp. 128-141.

Flint, Nicole, Pearson, Richard G., and Crossland, Michael R. (2012) Use of aquatic plants to create fluctuating hypoxia in an experimental environment. Marine and Freshwater Research, 63 (4). pp. 351-360.

Lewis, S.E., Brodie, J.E., McCulloch, M.T., Mallella, J., Jupiter, S.D., Williams, H. Stuart, Lough, J.M., and Matson, E.G. (2012) An assessment of an environmental gradient using coral geochemical records, Whitsunday Islands, Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 306-319.

Brodie, Jon, Wolanski, Eric, Lewis, Stephen, and Bainbridge, Zoe (2012) An assessment of residence times of land-sourced contaminants in the Great Barrier Reef lagoon and the implications for management and reef recovery. Marine Pollution Bulletin, 65 (4-9). pp. 267-279.

Brodie, Jon, and Waterhouse, Jane (2012) A critical review of environmental management of the 'not so Great' Barrier Reef. Estuarine, Coastal and Shelf Science , 104-105. pp. 1-22.

Kennedy, Karen, Devlin, Michelle, Bentley, Christie, Lee-Chue, Kristie, Paxman, Chris, Carter, Steve, Lewis, Stephen, Brodie, Jon, Guy, Ellia, Vardy, Suzanne, Martin, Katherine C., Jones, Alison, Packett, Robert, and Mueller, Jochen F. (2012) The influence of a season of extreme wet weather events on exposure of the World Heritage Area Great Barrier Reef to pesticides. Marine Pollution Bulletin, 64 (7). pp. 1495-1507.

Carroll, Chris, Waters, David, Vardy, Suzanne, Silburn, David M., Attard, Steve, Thorburn, Peter J., Davis, Aaron M., Halpin, Neil, Schmidt, Michael, Wilson, Bruce, and Clark, Andrew (2012) A paddock to reef monitoring and modelling framework for the Great Barrier Reef: paddock and catchment component. Marine Pollution Bulletin, 65 (4-9). pp. 136-149.

Broadhurst, B.T. , Ebner, B.C., and Clear, R.C. (2012) A rock-ramp fishway expands nursery grounds of the endangered Macquarie perch (Macquaria australasica). Australian Journal of Zoology, 60 (2). pp. 91-100.

Aswani, Shankar, Christie, Patrick, Muthiga, Nyawira A., Mahon, Robin, Primavera, Jurgenne H., Cramer, Lori A., Granek, Elise F., Kennedy, Chris J., Wolanski, Eric, and Hacker, Sally (2012) The way forward with ecosystem-based management in tropical contexts: reconciling with existing management systems. Marine Policy, 36 (1). pp. 1-10.

Lewis, S.E., Smith, R., Brodie, J.E., Bainbridge, Z.T., Davis, A.M., and Turner, R. (2011) Using monitoring data to model herbicides exported to the Great Barrier Reef, Australia. In: Proceedings of 19th International Congress on Modelling and Simulation, pp. 2051-2056. From: MODSIM 2011 19th International Congress on Modelling and Simulation, 12–16 December 2011, Perth, WA, Australia.

Brodie, J.E., Devlin, M., Haynes, D., and Waterhouse, J. (2011) Assessment of the eutrophication status of the Great Barrier Reef lagoon (Australia). Biogeochemistry, 106 (2). pp. 281-302.

Foden, Jo, Devlin, Michelle J., Mills, David K., and Malcolm, Stephen J. (2011) Searching for undesirable disturbance: an application of the OSPAR eutrophication assessment method to marine waters of England and Wales. Biogeochemistry, 106 (2). pp. 157-175.

Andutta, Fernando P., Ridd, Peter V., and Wolanski, Eric (2011) Dynamics of hypersaline coastal waters in the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 94 (4). pp. 299-305.

Pusey, Brad, Kennard, Mark, Burrows, Damien, Perna, Colton, Kyne, Peter, Cook, Ben, and Hughes, Jane (2011) Freshwater fish. In: Pusey, B.J., (ed.) Aquatic Biodiversity in Northern Australia: Patterns, Threats and Future. CDU Press, Darwin, NT, pp. 71-92.

Bricker, Suzanne, and Devlin, Michelle (2011) Preface: "Eutrophication" issue of Biogeochemistry. Biogeochemistry, 106 (2). pp. 135-136.

Bohensky, Erin, Butler, James R.A., Costanza, Robert, Bohnet, Iris, Delisle, Aurélie, Fabricius, Katharina, Gooch, Margaret, Kubiszewski, Ida, Lukacs, George, Pert, Petina, and Wolanski, Eric (2011) Future makers or future takers? A scenario analysis of climate change and the Great Barrier Reef. Global Environmental Change, 21 (3). pp. 876-893.

Devlin, Michelle, and Lewis, Stephen (2011) Advancing Our Understanding of the Source, Transport and Impacts of Pesticides on the Great Barrier Reef and in Associated Ecosystems: a review of MTSRF research outputs, 2006-2010. Report. Reef and Rainforest Research Centre, Cairns, QLD.

Ebner, B.C., Kroll, B., Godfrey, P., Thuesen, P.A., Vallance, T., Pusey, B., Allen, G.R., Rayner, T.S., and Perna, C.N. (2011) Is the elusive Gymnothorax polyuranodon really a freshwater moray? Journal of Fish Biology, 79 (1). pp. 70-79.

Waterhouse, Jane, and Devlin, Michelle (2011) Managing Water Quality on the Great Barrier Reef: an overview of MTSRF research outputs, 2006-2010. Report. Reef and Rainforest Research Centre, Cairns.

Gedan, Keryn B., Kirwan, Matthew L., Wolanski, Eric, Barbier, Edward B., and Silliman, Brian R. (2011) The present and future role of coastal wetland vegetation in protecting shorelines: answering recent challenges to the paradigm. Climatic Change, 106 (1). pp. 7-29.

Morgan, David L., Allen, Gerald R., Pusey, Bradley J., and Burrows, Damien W. (2011) A review of the freshwater fishes of the Kimberley region of Western Australia. Zootaxa, 2816. pp. 1-64.

Devlin, Michelle, Bricker, Suzanne, and Painting, Suzanne (2011) Comparison of five methods for assessing impacts of nutrient enrichment using estuarine case studies. Biogeochemistry, 106 (2). pp. 177-205.

Waterhouse, Jane, Brodie, Jon, UNSPECIFIED, and UNSPECIFIED (2011) Identification of Priority Pollutants and Priority Areas in the Great Barrier Reef catchments. Report. Reef and Rainforest Research Centre, Cairns, QLD.

Devlin, Michelle (2011) Flooding in NE Australia: how ongoing monitoring of flood plumes helps in managing the Great Barrier Reef. Marine Ecosystems and Management, 4 (4). p. 7.

Davis, A.M., Pearson, R.G., Pusey, B.J., Perna, C., Morgan, D.L., and Burrows, D. (2011) Trophic ecology of northern Australia's terapontids: ontogenetic dietary shifts and feeding classification. Journal of Fish Biology, 78 (1). pp. 265-286.

Dowe, John L., and Jones, David L. (2011) Arecaceae. In: Wilson, Annette, (ed.) Flora of Australia. Flora of Australia Series, 39 . Australian Biological Resources Study/CSIRO, Melbourne, VIC, Australia, pp. 145-210.

Wolanski, Eric, McLusky, Donald, Laane, R.W.P.M., and Middleburg, J.J. (2011) Biogeochemistry. Treatise on Estuarine and Coastal Science, 5 . Academic Press, London, UK.

Wilkinson, Clive, and Brodie, Jon (2011) Catchment Management and Coral Reef Conservation. Global Coral Reef Monitoring Network and Reef and Rainforest Research Centre, Townsville, QLD, Australia.

Bainbridge, Zoe, Dight, Ian, Yorkston, Hugh, Lewis, Stephen, and Brodie, Jon (2011) Catchment management in a dry tropical river near the Great Barrier Reef. In: Wilkinson, Clive, and Brodie, Jon, (eds.) Catchment Management and Coral Reef Convservation. Global Coral Reef Monitoring Network and Reef and Rainforest Research Centre, Townsville, QLD, Australia, pp. 96-97.

Wolanski, Eric, McLusky, Donald, Simenstad, C., and Yanagi, T. (2011) Classification of Estuarine and Nearshore Coastal Ecosystems. Treatise on Estuarine and Coastal Science, 1 . Academic Press, London, UK.

Pusey, Brad, Warfe, Danielle, Townsend, Simon, Douglas, Michael, Burrows, Damien, Kennard, Mark, and Close, Paul (2011) Condition, impacts and threats to aquatic biodiversity. In: Pusey, B.J., (ed.) Aquatic Biodiversity in Northern Australia: Patterns, Threats and Future. CDU Press, Darwin, NT, pp. 151-172.

Richmond, Robert H., and Wolanski, Eric (2011) Coral research: past efforts and future horizons. In: Dubinsky, Zvy, and Stambler, Noga, (eds.) Coral Reefs: An Ecosystem in Transition. Springer, London, pp. 3-10.

Wolanski, Eric, McLusky, Donald, Chícharo, L., and Zalewski, M. (2011) Ecohydrology and Restoration. Treatise on Estuarine and Coastal Science, 10 . Academic Press, London, UK.

Ben-Hamadou, R., Atanasova, N., and Wolanski, E. (2011) Ecohydrology modeling: tools for management. In: Wolanski, Eric, McLusky, Donald, Chícharo, L., and Zalewski, M., (eds.) Ecohydrology and Restoration. Treatise on Estuarine and Coastal Science, 10 . Academic Press, London, UK, pp. 301-328.

Mnaya, Bakari, Kiwango, Yustina, Gereta, Emmanuel, and Wolanski, Eric (2011) Ecohydrology-based planning as a solution to address an emerging water crisis in the Serengeti ecosystem and Lake Victoria. In: Elliot, Hannah S., and Martin, Lucas E., (eds.) River Ecosystems: dynamics, management and conservation. Nova Science Publishers, New York, NY, USA, pp. 233-258.

Wolanski, Eric, McLusky, Donald, van den Belt, M., and Costanza, R. (2011) Ecological Economics of Estuaries and Coasts. Treatise on Estuarine and Coastal Science, 12 . Academic Press, London, UK.

Golbuu, Yimnang, Wolanski, Eric, Harrison, Peter, Richmond, Robert H., Victor, Steven, and Fabricius, Katharina E. (2011) Effects of land-use change on characteristics and dynamics of watershed discharges in Babeldaob, Palau, Micronesia. Journal of Marine Biology, 2011. pp. 1-17.

Wolanski, Eric, McLusky, Donald, Baird, D., and Mehta, A. (2011) Estuarine and Coastal Ecosystem Modeling. Treatise on Estuarine and Coastal Science, 9 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, Flemming, B.W., and Hansom, J.D. (2011) Estuarine and Coastal Geology and Geomorphology. Treatise on Estuarine and Coastal Science, 3 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, Heip, C.H.R., Middleburg, J.J., and Philippart, C.J.M. (2011) Functioning of Ecosystems at the Land–Ocean Interface. Treatise on Estuarine and Coastal Science, 7 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, and Schimmield, G. (2011) Geochemistry of Estuaries and Coasts. Treatise on Estuarine and Coastal Science, 4 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, Kennish, M.J., and Elliott, M. (2011) Human-Induced Problems (Uses and Abuses). Treatise on Estuarine and Coastal Science, 8 . Academic Press, London, UK.

Taylor, Helen, and Rasheed, Michael (2011) Impacts of a fuel oil spill on seagrass meadows in a subtropical port, Gladstone, Australia: the value of long-term marine habitat monitoring in high risk areas. Marine Pollution Bulletin, 63 (5-12). pp. 431-437.

Richmond, R.H., Golbuu, Y., Idechong, N., and Wolanski, E. (2011) Integration of social and cultural aspects in designing ecohydrology and restoration solutions. In: Wolanski, Eric, McLusky, Donald, Chicharo, L., and Zalewski, M., (eds.) Ecohydrology and Restoration. Treatise on Estuarine and Coastal Science, 10 . Academic Press, London, UK, pp. 71-80.

Gratani, Monica, Butler, James R.A., Royee, Frank, Valentine, Peter, Burrows, Damien, Canendo, Warren I., and Anderson, Alex S. (2011) Is validation of indigenous ecological knowledge a disrespectful process? A case study of traditional fishing poisons and invasive fish management from the Wet Tropics, Australia. Ecology and Society, 16 (3). pp. 1-14.

Bohnet, Iris C., Roebeling, Peter C., Williams, Kristen J., Holzworth, Dean, van Grieken, Martijn E., Pert, Petina L., Kroon, Frederieke J., Westcott, David A., and Brodie, Jon (2011) Landscapes Toolkit: an integrated modelling framework to assist stakeholders in exploring options for sustainable landscape development. Landscape Ecology, 26 (8). pp. 1179-1198.

Wolanski, Eric, McLusky, Donald, Kremer, H.H., and Pinckney, J.L. (2011) Management of Estuaries and Coasts. Treatise on Estuarine and Coastal Science, 11 . Academic Press, London, UK.

Hamann, Mark, Grech, Alana, Wolanski, Eric, and Lambrechts, Jonathan (2011) Modelling the fate of marine turtle hatchlings. Ecological Modelling, 222 (8). pp. 1515-1521.

Douglas, Michael, Jackson, Sue, Setterfield, Samantha, Pusey, Brad, Davies, Peter, Kennard, Mark, Burrows, Damien, and Bunn, Stuart (2011) Northern futures: threats and opportunities for freshwater ecosystems. In: Pusey, B.J., (ed.) Aquatic Biodiversity in Northern Australia: Patterns, Threats and Future. CDU Press, Darwin, NT, pp. 203-220.

Baker, William J., Norup, Maria V., Clarkson, James J., Couvreur, Thomas L.P., Dowe, John L., Lewis, Carl E., Pintaud, Jean-Christophe, Savolainen, Vincent, Wilmot, Tomas, and Chase, Mark W. (2011) Phylogenetic relationships among arecoid palms (Arecaceae: Arecoideae). Annals of Botany, 108 (8). pp. 1417-1432.

Wolanski, Eric, and McLusky, Donald (2011) Preface to the Treatise on Estuarine and Coastal Science. In: Wolanski, Eric, and McLusky, Donald, (eds.) Treatise on Estuarine and Coastal Science. Academic Press, London, UK, xxxvii-xl.

Johnson, Johanna, Brando, Vittorio, Devlin, Michelle, McKenzie, Len, Morris, Sheridan, Schaffelke, Britta, Thompson, Angus, Waterhouse, Jane, and Waycott, M (2011) Reef Rescue Marine Monitoring Program: 2009/2010 synthesis report. Report. Reef and Rainforest Research Centre, Cairns, QLD.

Fabricius, Katharina, Brodie, Jon, Waterhouse, Jane, and Yorkston, Hugh (2011) Science-based catchment management is evolving along the Great Barrier Reef of Australia. In: Wilkinson, Clive, and Brodie, Jon, (eds.) Catchment Management and Coral Reef Convservation. Global Coral Reef Monitoring Network and Reef and Rainforest Research Centre, Townsville, QLD, Australia, pp. 102-105.

Hughes, T.P., Bellwood, D.R., Baird, A.H., Brodie, J., Bruno, J.F., and Pandolfi, J.M. (2011) Shifting base-lines, declining coral cover, and the erosion of reef resilience: comment on Sweatman et al. (2011). Coral Reefs, 30 (3). pp. 653-660.

Carter, Alex, Carton, Guy, Russ, Garry, Tobin, Andrew, and Williams, Ashley (2011) Significant variation in spawning frequency of common coral trout, Plectropomus leopardus, on the Great Barrier Reef. In: Abstracts from the 48th Annual Conference of the Australian Marine Sciences Association, p. 35. From: AMSA 2011: 48th Annual Conference of the Australian Marine Sciences Association, 3-7 July 2011, Fremantle, WA, Australia.

Wolanski, Eric, McLusky, Donald, Wilson, J.G., and Luczkovich, J.J. (2011) Trophic Relationships of Coastal and Estuarine Ecosystems. Treatise on Estuarine and Coastal Science, 6 . Academic Press, London, UK.

Wolanski, Eric, McLusky, Donald, Uncles, R.J., and Monismith, S.G. (2011) Water and Fine-Sediment Circulation. Treatise on Estuarine and Coastal Science, 2 . Academic Press, London, UK.

Costanza, R., Bohensky, E., Butler, J.R.A., Bohnet, I., Delisle, A., Fabricius, K., Gooch, M., Kubiszewski, I., Lukacs, G., Pert, P., and Wolanski, E. (2011) A scencario analysis of climate change and ecosystem services for the Great Barrier Reef. In: Wolanski, Eric, McLusky, Donald, van den Belt, M., and Costanza, R., (eds.) Ecological Economics of Estuaries and Coasts. Treatise on Estuarine and Coastal Science, 12 . Academic Press, London, UK, pp. 305-326.

Davis, A.M., and Pusey, B.J. (2010) Trophic polymorphism and water clarity in northern Australian Scortum (Pisces: Terapontidae). Ecology of Freshwater Fish, 19 (4). pp. 638-643.

Scott, Colin, Lewis, Steve E., Milla, Rob, Taylor, Matthew C., Rodgers, Andrew J.W., Dumsday, Geoff, Brodie, Jon E., Oakeshott, John G., and Russell, Robyn J. (2010) A free-enzyme catalyst for the bioremediation of environmental atrazine contamination. Journal of Environmental Management, 91 (10). pp. 2075-2078.

Lambrechts, J., Humphrey, C., McKinna, L., Gourge, O., Fabricius, K.E., Mehta, A.J., Lewis, S., and Wolanski, E. (2010) Importance of wave-induced bed liquefaction in the fine sediment budget of Cleveland Bay, Great Barrier Reef. Estuarine, Coastal and Shelf Science , 89 (2). pp. 154-162.

Barfod, Anders S., Dowe, John Leslie, and Suksathan, Piyakaset (2010) Major Jenkins' fan palm in Thailand. Palms, 54 (3). pp. 109-118.

Pert, P.L., Butler, J.R.A., Brodie, J.E., Bruce, C., Honzák, M., Kroon, F.J., Metcalfe, D., Mitchell, D., and Wong, G. (2010) A catchment-based approach to mapping hydrological ecosystem services using riparian habitat: a case study from the Wet Tropics, Australia. Ecological Complexity, 7 (3). pp. 378-388.

Lewis, Stephen Edward, Henderson, Robert A., Dickens, Gerald R., Shields - Zhou, Graham A., and Coxhell, Simon (2010) The geochemistry of primary and weathered oil shale and coquina across the Julia Creek vanadium deposit (Queensland, Australia). Mineralium Deposita, 45 (6). pp. 599-620.

Shenton, Will, Hart, Barry T., and Brodie, Jon (2010) A Bayesian network model linking nutrient management actions in the Tully catchment (northern Queensland) with Great Barrier Reef condition. Marine and Freshwater Research, 61 (5). pp. 587-595.

Lymbery, A.J., Hassan, M., Morgan, D.L., Beatty, S.J., and Doupé, R.G. (2010) Parasites of native and exotic freshwater fishes in south-western Australia. Journal of Fish Biology, 76 (7). pp. 1770-1785.

Doupe, R.G., and Knott, M.J. (2010) Rapid digestion of fish prey by the highly invasive ‘detritivore’ Oreochromis mossambicus. Journal of Fish Biology, 76 (4). pp. 1019-1024.

Davis, A.M., Pusey, B.J., Thorburn, D.C ., Dowe, J.L., Morgan, D.L., and Burrows, D. (2010) Riparian contributions to the diet of terapontid grunters (Pisces: Terapontidae) in wet–dry tropical rivers. Journal of Fish Biology, 76 (4). pp. 862-879.

Heffernan, Janet, Barry, Jon, Devlin, Michelle, and Fryer, Rob (2010) A simulation tool for designing nutrient monitoring programmes for eutrophication assessments. Environmetrics, 21 (1). pp. 3-20.

Chen, Zhongyuan, Yanagi, Tetsuo, and Wolanski, Eric (2010) EMECS8 – harmonizing catchment and estuary. Estuarine, Coastal and Shelf Science, 86 (3). v-v.

Granek, Elise F., Polasky, Stephen, Kappel, Carrie V., Reed, Denise J., Stoms, David M., Koch, Evamaria W., Kennedy, Chris J., Cramer, Lori A., Hacker, Sally D., Barbier, Edward B., Aswani, Shankar, Ruckelshaus, Mary, Perillo, Gerardo M.E., Silliman, Brian R., Muthiga, Nyawira, Bael, David, and Wolanski, Eric (2010) Ecosystem services as a common language for coastal ecosystem-based management. Conservation Biology, 24 (1). pp. 207-216.

Doupe, Robert G., Mitchell, Jim, Knott, Matthew J., Davis, Aaron M., and Lymbery, Alan J. (2010) Efficacy of exclusion fencing to protect ephemeral floodplain lagoon habitats from feral pigs (Sus scrofa). Wetlands Ecology and Management, 18 (1). pp. 69-78.

Doupe, Robert G., Knott, Matthew J., Schaffer, Jason, Burrows, Damien W., and Lymbery, Alan J. (2010) Experimental herbivory of native Australian macrophytes by the introduced Mozambique tilapia Oreochromis mossambicus. Austral Ecology, 35 (1). pp. 24-30.

Siebert, S.J., Zobolo, A.M., and Dowe, J.L. (2010) Arecaceae. Bothalia, 40 (1). pp. 55-57.

Dowe, John (2010) Australian Palms: Biogeography, Ecology and Systematics. CSIRO Publishing, Collingwood, Victoria, Australia.

Lukacs, George P. (2010) Building global collaboration in tropical wetland research. Wetlands Ecology and Management, 18 (5). pp. 511-515.

Brodie, Jon, Schroeder, Thomas, Rohde, Ken, Faithful, John, Masters, Bronwyn, Dekker, Arnold, Brando, Vittorio, and Maughan, Mirjam (2010) Dispersal of suspended sediments and nutrients in the Great Barrier Reef lagoon during river-discharge events: conclusions from satellite remote sensing and concurrent flood-plume sampling. Marine and Freshwater Research, 61 (6). pp. 651-664.

Waterhouse, Jane, Grundy, Mike, Gordon, Iain, Brodie, Jon, Eberhard, Rachel, and Yorkston, Hugh (2010) Managing the catchments of the Great Barrier Reef. In: Ferrier, Robert C., and Jenkins, Alan, (eds.) Handbook of Catchment Management. Wiley-Blackwell, Oxford, UK, pp. 350-375.

McKenna, Skye, Rasheed, Michael A., Taylor, Helen, and Chartrand, Katie (2010) Understanding tropical seagrass light requirements and resilience to effectively manage seagrass health during major dredging projects. In: [Presented at the 9th World Seagrass Conference]. From: 9th World Seagrass Conference, 21-25 November 2010, Phuket, Thailand.

Lukacs, G.P., and Finlayson, C.M. (2010) An evaluation of ecological information on Australia’s northern tropical rivers and wetlands. Wetlands Ecology and Management, 18 (5). pp. 597-625.

Perna, Colton N., Burrows, Damien, Cappo, Mike, and Pusey, Bradley J. (2009) Floodplain degradation and restoration in Northern Queensland: the response of the Alien Fish Pest Gambusia holbrooki. Ecological Management and Restoration, 10 (3). pp. 241-243.

Lewis, Stephen, Milla, Rob, Brodie, Jon, Bainbridge, Zoë, and Davis, Aaron (2009) Pesticide residues in the Great Barrier Reef. Pesticides News, 86. pp. 8-11.

Devlin, Michelle, Barry, Jon, Painting, Suzanne, and Best, Mike (2009) Extending the phytoplankton tool kit for the UK Water Framework Directive: indicators of phytoplankton community structure. Hydrobiologia, 633 (1). pp. 151-168.

Partridge, G.J., Jenkins, G.I., Doupe, R.G., De Lestang, S., Ginbey, B.M., and French, D. (2009) Factors affecting mark quality of alizarin complexone-stained otoliths in juvenile black bream Acanthopagrus butcheri and a prescription for dosage. Journal of Fish Biology, 75 (6). pp. 1518-1523.

Lewis, Stephen E., Brodie, Jon E., Bainbridge, Zoe T., Rohde, Ken W., Davis, Aaron M., Masters, Bronwyn L., Maughan, Mirjam, Devlin, Michelle J., Mueller, Jochen F., and Schaffelke, Britta (2009) Herbicides: a new threat to the Great Barrier Reef. Environmental Pollution, 157 (8-9). pp. 2470-2484.

Bainbridge, Zoe T., Brodie, Jon E. , Faithful, John W., Sydes, Damon A., and Lewis, Stephen E. (2009) Identifying the land-based sources of suspended sediments, nutrients and pesticides discharged to the Great Barrier Reef from the Tully–Murray Basin, Queensland, Australia. Marine and Freshwater Research, 60 (11). pp. 1081-1090.

Lewis, S.E., Sherman, B.S., Bainbridge, Z.T., Brodie, J.E., and Cooper, M. (2009) Modelling and monitoring the sediment trapping efficiency and sediment dynamics of the Burdekin Falls Dam, Queensland, Australia. In: Proceedings of 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, pp. 4022-4028. From: 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 13–17 July 2009, Cairns, QLD, Australia.

Bainbridge, Z.T., Brodie, J.E., Lewis, S.E., Waterhouse, J., and Wilkinson, S.N. (2009) Utilising catchment modelling as a tool for monitoring Reef Rescue outcomes in the Great Barrier Reef catchment area. In: Proceedings of 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, pp. 3301-3307. From: 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, 13–17 July 2009, Cairns, QLD, Australia.

Doupé, Robert G., Schaffer, Jason, Knott, Matthew J., and Burrows, Damien W. (2009) How might an exotic fish disrupt spawning success in a sympatric native species? Marine and Freshwater Research, 60 (5). pp. 379-383.

Shapcott, A., Dowe, J.L., and Ford, H. (2009) Low genetic diversity and recovery implications of the vulnerable Bankouale´ Palm Livistona carinensis (Arecaceae), from North-eastern Africa and the Southern Arabian Peninsula. Conservation Genetics, 10 (2). pp. 317-327.

Devlin, M.J., Barry, J., Mills, D.K., Gowen, R.J., Foden, J., Sivyer, D., Greenwood, N., Pearce, D., and Tett, P. (2009) Estimating the diffuse attenuation coefficient from optically active constituents in UK marine waters. Estuarine, Coastal and Shelf Science , 82 (1). pp. 73-83.

Koch, Evamaria W., Barbier, Edward B., Silliman, Brian R., Reed, Denise J., Perillo, Gerardo M.E., Hacker, Sally D., Granek, Elise F., Primavera, Jurgenne H., Muthiga, Nyawira, Polasky, Stephen, Halpern, Benjamin S., Kennedy, Christopher J., Kappel, Carrie V., and Wolanski, Eric (2009) Non-linearity in ecosystem services: temporal and spatial variability in coastal protection. Frontiers in Ecology and the Environment, 7 (1). pp. 29-37.

Brodie, Jon, Pearson, Richard, Lewis, Stephen, Bainbridge, Zoe, Waterhouse, Jane, and Prange, Joelle (2009) Water quality research: baseline synthesis and year 1 summary. Report. Reef and Rainforest Research Centre on behalf of the Australian Government's Marine and Tropical Sciences Research Facility, Cairns, Australia.

Dowe, John Leslie (2009) A preliminary note on the impact of Cyclone Larry on populations of Archontophoenix alexandrae (Arecaceae), north Queensland, Australia. Palms & Cycads, 102. pp. 4-8.

Dowe, John Leslie (2009) Archontophoenix (Arecaceae) description of species and notes. The Palm Journal, 192. pp. 4-11.

Griffith, M. Patrick, Dowe, John L., Noblick, Larry R., and Danielson, I. Laurie (2009) Archontophoenix at Montgomery Botanical Center. The Palm Journal, 192. pp. 12-14.

Kroon, F.J., and Brodie, J. (2009) Catchment management and health of coastal ecosystems: synthesis and future research. Marine and Freshwater Research, 60 (11). pp. 1196-1200.

Wolanski, Eric, Brinson, Mark M., Cahoon, Donald R., and Perillo, Gerardo M.E. (2009) Coastal Wetlands: a synthesis. In: Perillo, Gerardo M.E., Wolanski, Eric, Cahoon, Donald R., and Brinson, Mark M., (eds.) Coastal Wetlands: an integrated ecosystem approach. Elsevier, Amsterdam, The Netherlands, pp. 1-62.

Perillo, Gerardo M.E., Wolanski, Eric, Cahoon, Donald R., and Brinson, Mark M. (2009) Coastal Wetlands: an integrated ecosystem approach. Elsevier, Amsterdam, the Netherlands.

Gereta, Emmanuel , Mwangomo, Ephraim, and Wolanski, Eric (2009) Ecohydrology as a tool for the survival of the threatened Serengeti ecosystem. Ecohydrology and Hydrobiology, 9 (1). pp. 115-124.

Davis, Aaron M., and Perna, Colton (2009) Evidence for predation on terrestrial Cane Toads Bufo marinus by the Sooty Grunter Hephaestus fuliginosus in northern Australia. Northern Territory Naturalist, 21. pp. 45-48.

Mazda, Yoshihiro, and Wolanski, Eric (2009) Hydrodynamics and modelling of water flow in mangrove areas. In: Perillo, Gerardo M.E., Wolanski, Eric, Cahoon, Donald R., and Brinson, Mark M., (eds.) Coastal Wetlands: an Integrated ecosystem ppproach. Elsevier, Amsterdam, The Netherlands, pp. 231-261.

Doupé, R.G., Knott, M.J., Schaffer, J., and Burrows, D.W. (2009) Investigational piscivory of some juvenile Australian freshwater fishes by the introduced Mozambique tilapia Oreochromis mossambicus. Journal of Fish Biology, 74 (10). pp. 2386-2400.

Wolanski, Eric, Martinez, Jonathan A., and Richmond, Robert H. (2009) Quantifying the impact of watershed urbanization on a coral reef: Maunalua Bay, Hawaii. Estuarine, Coastal and Shelf Science , 84 (2). pp. 259-268.

Maughan, M., and Brodie, J. (2009) Reef exposure to river-borne contaminants: a spatial model. Marine and Freshwater Research, 60 (11). pp. 1132-1140.

Carter, Alexandra, Mapstone, Bruce, Russ, Garry, Tobin, Andrew, and Williams, Ashley (2009) Regional variation in the benefit of no-take marine reserves on reproductive output of the common coral trout, Plectropomus leopardus. In: Abstracts from the Australian National Network in Marine Science Inaugural Conference. From: ANNIMS 2009: Australian National Network in Marine Science Inaugural Conference, 1-2 December 2009, Hobart, TAS, Australia.

Mitchell, A., Reghenzani, J., Faithful, J., Furnas, M., and Brodie, J. (2009) Relationships between land use and nutrient concentrations in streams draining a ‘wet-tropics’ catchment in northern Australia. Marine and Freshwater Research, 60 (11). pp. 1097-1108.

Devlin, Michelle, and Schaffelke, Britta (2009) Spatial extent of riverine flood plumes and exposure of marine ecosystems in the Tully coastal region, Great Barrier Reef. Marine and Freshwater Research, 60 (11). pp. 1109-1122.

Brodie, Jon, Lewis, Stephen, Bainbridge, Zoe, Mitchell, Alan, Waterhouse, Jane, and Kroon, Frederieke (2009) Target setting for pollutant discharge management of rivers in the Great Barrier Reef catchment area. Marine and Freshwater Research, 60 (11). pp. 1141-1149.

Schaffer, Jason, Doupe, Robert G., and Lawler, Ivan R. (2009) What for the future of the Jardine River Painted Turtle? Pacific Conservation Biology, 15 (2). pp. 92-95.

Doupe, Robert G., Schaffer, Jason, Knott, Matthew J., and Dicky, Paul W. (2009) A description of freshwater turtle habitat destruction by feral pigs in tropical north eastern Australia. Herpetological Conservation and Biology, 4 (3). pp. 331-339.

Dowe, J.L. (2009) A taxonomic account of Livistona R.Br. (Arecaceae). Garden's Bulletin Singapore, 60 (2). pp. 185-344.

O'Reagain, Peter, Bainbridge, Zoe, and Brodie, Jon (2008) Wambiana Grazing Trial: water quality update to Burdekin Dry Tropics NRM. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Prebble, M., and Dowe, J.L. (2008) The late Quaternary decline and extinction of palms on oceanic Pacific islands. Quaternary Science Reviews, 27 (27). pp. 2546-2567.

Doupè, Robert G., Schaffer, Jason, and Knott, Matthew J. (2008) An Example of Freshwater Turtle Habitat Destruction by Foraging Feral Pigs in Tropical North-Eastern Australia. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Webb, Alan (2008) Risk Assessment Model Development for Establishment Success and Impact of Non-native Freshwater Fishes in the Wet Tropics Bioregion, Northern Queensland, Australia. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Barbier, Edward B., Koch, Evamaria W., Silliman, Brian R., Hacker, Sally D., Wolanski, Eric, Primavera, Jurgenne H., Granek, Elise F., Polasky, Stephen, Aswani, Shankar, Cramer, Lori A., Stoms, David M., Kennedy, Chris J., Bael, David, Kappel, Carrie V., Perillo, Gerardo M. E., and Reed, Denise J. (2008) Response to N. Koedam and F. Dahdouh-Guebas's E-Letter [original article: Barbier et al. (2008) Coastal ecosystem-based management with nonlinear ecological functions and values]. Science, 320. pp. 321-323.

Foden, J., Sivyer, D.B., Mills, D.K., and Devlin, M.J. (2008) Spatial and temporal distribution of chromophoric dissolved organic matter (CDOM) fluorescence and its contribution to light attenuation in UK waterbodies. Estuarine, Coastal and Shelf Science , 79 (4). pp. 707-717.

Devlin, M.J., Barry, J., Mills, D.K., Gowen, R.J., Foden, J., Sivyer, D., and Tett, P. (2008) Relationships between suspended particulate material, light attenuation and Secchi depth in UK marine waters. Estuarine, Coastal and Shelf Science , 79 (3). pp. 429-439.

Dowe, John Leslie (2008) Botanical Inventory of the Mungalla Coastal Habitats. Report. James Cook University, Townsville, QLD, Australia.

Lambrechts, Jonathan, Hanert, Emmanuel, Deleersnijder, Eric, Bernard, Paul-Emile, Legat, Vincent, Remacle, Jean-Francois, and Wolanski, Eric (2008) A multi-scale model of the hydrodynamics of the whole Great Barrier Reef. Estuarine, Coastal and Shelf Science , 79 (1). pp. 143-151.

Cannicci, Stefano, Burrows, Damien, Fratini, Sara, Smith III, Thomas J., Offenberg, Joachim, and Dahdouh-Guebas, Farid (2008) Faunal impact on vegetation structure and ecosystem function in mangrove forests: a review. Aquatic Botany, 89 (2). pp. 189-200.

Wolanski, Eric, and Richmond, Robert (2008) Estuary Restoration. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, UK, pp. 1422-1427.

Amos, Kathryn J., Croke, Jacky C., Hughes, Andrew O., Chapman, Joanne, Takken, Ingrid, and Lymburner, Leo (2008) A catchment-scale assessment of anabranching in the 143 000 km2 Fitzroy River catchment, north-eastern Australia. Earth Surface Processes and Landforms, 33 (8). pp. 1222-1241.

Wolanski, Eric, Fabricius, Katharina E., Cooper, Timothy F., and Humphrey, Craig (2008) Wet season fine sediment dynamics on the inner shelf of the Great Barrier Reef. Estuarine, Coastal and Shelf Science , 77 (4). pp. 755-762.

Davis, Aaron, Lewis, Stephen, Bainbridge, Zoe, Brodie, Jon, and Shannon , Evan (2008) Pesticide residues in waterways of the lower Burdekin region: challenges in ecotoxicological interpretation of monitoring data. Australasian Journal of Ecotoxicology, 14. pp. 89-108.

Barbier, Edward B., Koch, Eva-Maria W., Silliman, Brian R., Hacker, Sally D., Wolanski, Eric, Primavera, Jurgenne H., Granek, Elise F., Polasky, Stephen, Aswani, Shankar, Cramer, Lori A., Stoms, David M., Kennedy, Chris J., Bael, David, Kappel, Carrie V., Perillo, Gerardo M.E., and Reed, Denise J. (2008) Vegetation's role in coastal protection: response. American Association for the Advancement of Science.

White, Laurent, and Wolanski, Eric (2008) Flow separation and vertical motions in a tidal flow interacting with a shallow-water island. Estuarine, Coastal and Shelf Science , 77 (3). pp. 457-466.

Kiwango, Yustina Andrew, and Wolanski, Eric (2008) Papyrus wetlands, nutrients balance, fisheries collapse, food security, and Lake Victoria level decline in 2000–2006. Wetlands Ecology and Management, 16 (2). pp. 89-96.

Gowen, R.J., Tett, P., Kennington, K., Mills, D.K., Shammon, T.M., Stewart, B.M., Greenwood, N., Flanagan, C., Devlin, M., and Wither, A. (2008) The Irish Sea: Is it eutrophic? Estuarine, Coastal and Shelf Science , 76 (2). pp. 239-254.

Barbier, Edward B, Koch, Evamaria W., Silliman, Brian R., Hacker, Sally D., Wolanski, Eric, Primavera, Jurgenne, Granek, Elise F., Polasky, Stephen, Aswani, Shankar, Cramer , Lori A., Stoms, David M., Kennedy, Chris J., Bael, David, Kappel, Carrie V., Perillo, Gerardo M.E., and Reed, Denise J. (2008) Coastal ecosystem–based management with nonlinear ecological functions and values. Science, 319. pp. 321-323.

Richmond, Robert H., Houk, Peter, Trianni, Michael, Wolanski, Eric, Davis, Gerry, Bonito, Victor, and Paul, Valerie J. (2008) Aspects of biology and ecological functioning of coral reefs in Guam and the Commonwealth of the Northern Mariana Islands. In: Riegl, Bernhard M, and Dodge, Richard E, (eds.) Coral Reefs of the USA. Coral Reefs of the World, 1 . Springer , Netherlands, pp. 719-739.

Bohnet, Iris, Brodie, Jon, and Bartley, Rebecca (2008) Assessing water quality impacts of community defined land use change scenarios for the Douglas Shire, Far North Queensland. In: Pettit, Christopher, Cartwright, William, Bishop, Ian, Lowell, Kim, Pullar, David, and Duncan, David, (eds.) Landscape Analysis and Visualisation: spatial models for natural resource management and planning. Springer, Berlin, Heidleberg, pp. 383-406.

Wolanski, E., Newton, A., Rabalais, N., and Legrand, C. (2008) Coastal zone management. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, pp. 630-637.

Griffith, M. Patrick, Noblick, Larry R., Dowe, John L., Husby, Chad E., and Calonje, Michael A. (2008) Cyclone tolerance in New World Arecaceae: biogeographic variation and abiotic natural selection. Annals of Botany, 102 (4). pp. 591-598.

Webster, Tony, and Brodie, Jon (2008) Douglas Shire Fertiliser Trial and a Review of Nitrogen Fertiliser Research in Sugarcane Cultivation. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Wolanski, E., Chicharo, L., and Chicharo, M.A. (2008) Estuarine ecohydrology. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, pp. 1413-1422.

Dowe, John Leslie, and Broughton, Alan D. (2008) F.M. Bailey's taxonomy of A. Meston's collections from the Bellenden Ker Expedition of 1904. Austrobaileya, 7. pp. 675-677.

Veitch, Vern, Burrows, Damien, and Hudson, David (2008) Innovative method of water hyacinth removal in tropical coastal wetlands - cutting the costs. In: Proceedings of the 16th Australian Weeds Conference, pp. 444-447. From: 16th Australian Weeds Conference, 18-22 May 2008, Cairns, QLD., Australia.

Bainbridge, Zoe, Brodie, Jon, Manning, Chris, Waterhouse, Jane, Lewis, Stephen, Gooch, Margaret, and Broderick, Kathleen (2008) Integrated Monitoring and Modelling Strategy for the Black Ross Water Quality Improvement Plan. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Coughlin, Tom, O'Reagain, Peter, Nelson, Brigid, Butler, Barry, and Burrows, Damien (2008) Managing for Water Quality within Grazing Lands for the Burdekin Catchment: guidelines for land managers. Report. Burdekin Solutions, Townsville, QLD, Australia.

Lewis, Stephen E., Wust, Raphael A.J., Webster, Jody M., and Shields, Graham A. (2008) Mid-late Holocene sea-level variability in eastern Australia. Terra Nova, 20 (1). pp. 74-81.

Kingsford, M.J., and Wolanski, E. (2008) Oceanography. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 28-39.

Webb, A.C. (2008) Spatial and temporal influences on population dynamics of a branchiuran ectoparasite, Argulus sp. A., in fresh waters of tropical northern Queensland, Australia. Crustaceana, 81 (9). pp. 1055-1067.

Perna, Colton , and Pearson, Richard G. (2008) Temporal dynamics of fish assemblages in small seasonal streams in the Queensland tropics. Australian Journal of Zoology, 56 (1). pp. 65-73.

Brodie, J., and Fabricius, K. (2008) Terrestrial runoff to the Great Barrier Reef and the implications for its long term ecological status. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 108-113.

Doupe, Robert G., and Burrows, Damien W. (2008) Thirty years later, should we be more concerned for the ongoing invasion of Mozambique Tilapia in Australia? Pacific Conservation Biology, 14 (4). pp. 235-238.

Brodie, Jon, Bainbridge, Zoe, and Lewis, Stephen (2008) Tully Murray Water Quality Monitory Strategy. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Brodie, Jon, and Bainbridge, Zoe (2008) Water Quality Targets for the Burdekin Water Quality Improvement Plan. ACTFR Report No. 08/05 for the Burdekin Dry Tropics NRM. Report. James Cook University, Townsville, QLD, Australia.

Maughan, M, Brodie, J, and Waterhouse, J (2008) What river impacts this reef? A simple reef exposure model. In: Proceedings of Water Down Under 2008: incorporating 31st Hydrology and Water Resources Symposium and 4th International Conference on Water Resources and Environment Research, pp. 1912-1923. From: Water Down Under 2008, 15-17 Apr 2008, Adelaide, SA, Australia.

Hassan, Marina H., Beatty, S.J. , Morgan, D.L., Doupe, R.G., and Lymbery, A.J. (2008) An introduced parasite, Lernaea cyprinacea L., found on native freshwater fishes in the south west of Western Australia. Journal of the Royal Society of Western Australia, 91 (2). pp. 149-153.

Haynes, David, Brodie, Jon, Waterhouse, Jane, Bainbridge, Zoe, Bass, Deb, and Hart, Barry (2007) Assessment of the water quality and ecosystem health of the Great Barrier Reef (Australia): conceptual models. Environmental Management, 40 (6). pp. 993-1003.

Volk, Martin, Hirschfeld, Jesko, Schmidt, Gerd, Bohn, Carsten, Dehnhardt, Alexandra, Liersch, Stefan, and Lymburner, Leo (2007) A SDSS-based ecological-economic modelling approach for integrated river basin management on different scale levels - The project FLUMAGIS. Water Resources Management, 21 (12). pp. 2049-2061.

Connolly, Niall M., and Pearson, Richard G. (2007) The effect of fine sedimentation on tropical stream macroinvertebrate assemblages: a comparison using flow-through artificial stream channels and recirculating mesocosms. Hydrobiologia, 592 (1). pp. 423-438.

Lymburner, Leo, and Burrows, Damien (2007) Prioritizing Waterbody Management in the Leichhardt Catchment: using a Landsat TM archive to characterise water permanence and water clarity. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Turak, Emre, Brodie, Jon, and DeVantier, Lyndon (2007) Reef-building corals and coral communities of the Yemen Red Sea. Fauna of Arabia, 23. pp. 1-40.

Veitch, Vern, and Burrows, Damien (2007) Investigation of Potential Barriers Restricting Fish Passage into Horseshoe Lagoon, Burdekin-Haughton Floodplain, North Queensland. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Veitch, Vern, Burrows, Damien, Hudson, David, and Butler, Barry (2007) Removal of Aquatic Weeds From Lagoon Creek, Herbert Catchment North Queensland: trialling novel removal methods and demonstration of environmental benefits. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Fairfax, R., Fensham, R., Wager, R., Brooks, S., Webb, A., and Unmack, P. (2007) Recovery of the red-finned blue-eye: an endangered fish from springs of the Great Artesian Basin. Wildlife Research, 34 (2). pp. 156-166.

Miller, David J., Hemmrich, Georg, Ball, Eldon E., Hayward, David C., Khalturin, Konstantin, Funayama, Noriko, Agata, Kiyokazu, and Bosch, Thomas C.G. (2007) The innate immune repertoire in Cnidaria - ancestral complexity and stochastic gene loss. Genome Biology, 8 (4). R59.1-R59.13.

Brodie, J., De'ath, G., Devlin, M., Furnas, M., and Wright, M. (2007) Spatial and temporal patterns of near-surface chlorophyll a in the Great Barrier Reef lagoon. Marine and Freshwater Research, 58 (4). pp. 342-353.

Greiner, Romy, and Lankester, Allyson (2007) Supporting on-farm biodiversity conservation through debt-for-conservation swaps: concept and critique. Land Use Policy, 24 (2). pp. 458-471.

Butler, Barry, Loong, Dom, and Burrows, Damien (2007) Accumulation of metals in stream sediments of the Upper Walsh River Catchment, North Queensland. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Veitch, Vern, Burrows, Damien, and Tait, Jim (2007) Aquatic ecosystems of Barratta Creek: review of existing knowledge. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Poon, E., Westcott, D.A., Burrows, D., and Webb, A. (2007) Assessment of research needs for the management of invasive species in the terrestrial and aquatic ecosystems of the Wet Tropics. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Thorburn, Peter, Davis, Aaron, Attard, Steve, Milla, Rob, Anderson, Toni, and McShane, Tom (2007) Best management practices to improve the quality of water leaving irrigated sugarcane farms: guidelines for the Burdekin region. Report. Burdekin Dry Tropics NRM, Townsville, QLD, Australia.

Burrows, Damien, and Butler, Barry (2007) Determining end-point goals and effective strategies for rehabilitation of Coastal Wetlands: examples from the Burdekin River, North Queensland. In: Proceedings of the 5th Australian Stream Management Conference: Australian Rivers: Making a Difference, pp. 49-54. From: 5th Australian Stream Management Conference: Australian Rivers: Making a Difference, 21-25 May 2007, Albury, NSW.

Lankester, Allyson, and Greiner, Romy (2007) Developing appropriate incentives for improving water quality in the Burdekin River catchment. In: Proceedings of the 5th Australian Stream Management Conference. Australian Rivers: Making a Difference. From: 5th Australian Stream Management Conference: Australian Rivers: Making a Difference, 21-25 May 2007, Albury, NSW.

Butler, Barry, and Burrows, Damien W. (2007) Dissolved Oxygen Guidelines for Freshwater Habitats of Northern Australia. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Dowe, John Leslie, and Broughton, Alan D. (2007) F.M. Bailey's ascent of Mt Bellenden-Ker in 1889, and notes on the publication priority of new vascular plant species from the expedition. Austrobaileya, 7 (3). pp. 555-566.

Tait, Jim, and Veitch, Vern (2007) Freshwater wetlands of the Barratta Creek catchement management investment strategy. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Greiner, Romy, Lankester, Allyson, and Patterson, Louisa (2007) Incentives to enhance the adoption of 'best management practices' by landholders: achieving water quality improvements in the Burdekin River catchment. Report. Burdekin Dry Tropics, Townsville, QLD, Australia.

Hateley, L.R., Armour, J.D., Brodie, J., Faithful, J., Pitt, G.L., and Nelson, P.N. (2007) Modelling, monitoring and sediment tracing in the Tully river catchment, North Queensland: a comparison of techniques. In: Proceedings of MODSIM07: the International Congress on Modelling and Simulation, pp. 867-873. From: MODSIM07: International Congress on Modelling and Simulation, 10-13 December 2007, Christchurch, New Zealand.

Davis, Aaron (2007) Overview of research and environmental issues relevant to development of recommended farming practices for sugar cane farming in the Lower Burdekin region. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Prideaux, Bruce (2007) Potential impacts of generational change on destinations. In: Chen, Joseph S., (ed.) Advances in Hospitality and Leisure. Elsevier, Oxford, UK, pp. 39-54.

Butler, Barry, Burrows, Damien, and Pearson, Richard (2007) Providing regional NRM with improved aquatic health risk assessment and monitoring tools: the nationally significant indication: dissolved oxygen. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Dowe, John Leslie (2007) Ptychosperma macarthurii: discovery, horticulture and taxonomy. Palms, 51 (2). pp. 85-96.

Bainbridge, Z.T., Lewis, S.E., and Brodie, J.E. (2007) Sediment and nutrient exports for the Burdekin River catchment, north Queensland: a comparison of monitoring and modelling data. In: Proceedings of MODSIM07: the International Congress on Modelling and Simulation, pp. 874-880. From: MODSIM07: International Congress on Modelling and Simulation, 10-13 December 2007, Christchurch, New Zealand.

Veitch, Vern, Burrows, Damien, and Hudson, David (2007) Trialling different low cost methods of water hyacinth removal in tropical coastal wetlands. In: Proceedings of the 5th Australian Stream Management Conference. Australian Rivers: Making a Difference, pp. 407-412. From: 5th Australian Stream Management Conference. Australian Rivers: Making a Difference, 21-25 May 2007, Albury, NSW.

Lymburner, Leo, Burrows, Damien, and Butler, Barry (2007) Using remote sensing to map wetland water clarity and permanence: approaches for identifying wetlands requiring management in large catchments. In: Proceedings of the 5th Australian Stream Management Conference. Australian Rivers: Making a Difference, pp. 235-240. From: 5th Australian Stream Management Conference. Australian Rivers: Making a Difference, 21-25 May 2007, Albury, NSW.

Sheaves, Marcus, Brodie, Jon, Brooke, Brendan, Dale, Pat, Lovelock, Catherine, Waycott, Michelle, Gehrke, Peter, Johnston, Ross, and Baker, Ronald (2007) Vulnerability of coastal and estuarine habitats in the GBR to climate change. In: Johnson, Johanna E., and Marshall, Paul A., (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority and the Australian Greenhouse Office, Townsville, QLD, Australia, pp. 593-620.

Möller, M., Lymburner, L., and Volk, M. (2007) The comparison index: A tool for assessing the accuracy of image segmentation. International Journal of Applied Earth Observation and Geoinformation, 9 (3). pp. 311-321.

Wolanski, Eric, and Furukawa, Keita (2007) The oceanography of Palau. In: Kayanne, Hajime, Omori, Makoto, Fabricius, Katharina, Verheij, Eric, Colin, Patrick, Golbuu, Yimnang, and Yukihira, Hideki, (eds.) Coral Reefs of Palau. Palau International Coral Reef Center, Palau, pp. 59-72.

Coles, Rob, Grech, Alana, Dew, Kara, Zeller, Brad, and McKenzie, Leonard (2007) A preliminary report on the adequacy of protection provided to species and benthic habitats in the east coast otter trawl fishery by the current system of closures. Report. UNSPECIFIED, Cairns, QLD, Australia.

Lewis, S.E., Bainbridge, Z.T., and Brodie, J.E. (2007) A review of load tools available for calculating pollutant exports to the Great Barrier Reef lagoon: a case study of varying catchment areas. In: Proceedings of MODSIM07: the International Congress on Modelling and Simulation, pp. 2396-2402. From: MODSIM07 International Congress on Modelling and Simulation: Land, Water & Environmental Management: Integrated Systems for Sustainability, 10-13 December 2007, Christchurch, New Zealand.

Wooldridge, Scott, Brodie, Jon, and Furnas, Miles (2006) Exposure of inner-shelf reefs to nutrient enriched runoff entering the Great Barrier Reef Lagoon: post-European changes and the design of water quality targets. Marine Pollution Bulletin, 52 (11). pp. 1467-1479.

Fensham, R.J., Bean, A.R., Dowe, J. L., and Dunlop, C.R. (2006) This disastrous event staggered me: reconstructing the botany of Ludwig Leichhardt on the expedition from Moreton Bay to Port Essington, 1844-45. Cunninghamia, 9 (4). pp. 451-506.

Wolanski, Eric, Chicharo, Luís, Chicharo, M. Alexandra, and Morais, Pedro (2006) An ecohydrology model of the Guadiana Estuary (South Portugal). Estuarine, Coastal and Shelf Science , 70 (1-2). pp. 132-143.

Dixon, Ian, Douglas, Michael, Dowe, John, and Burrows, Damien (2006) Tropical rapid appraisal of riparian condition Version 1 (for use in tropical savannas). UNSPECIFIED. Land and Water Australia, Canberra, Australia.

Wolanski, E., Williams, D., and Hanert, E. (2006) The sediment trapping efficiency of the macro-tidal Daly Estuary, tropical Australia. Estuarine, Coastal and Shelf Science , 69 (1-2). pp. 291-298.

Pusey, Bradley, Burrows, Damien, Arthington, Angela, and Kennard, Mark (2006) Translocation and spread of piscivorous fishes in the Burdekin River, north-eastern Australia. Biological Invasions, 8 (4). pp. 965-977.

Wolanski, Eric (2006) The evolution time scale of macro-tidal estuaries: examples from the Pacific Rim. Estuarine, Coastal and Shelf Science , 66 (3-4). pp. 544-549.

Graham, Catherine H., Moritz, Craig, and Williams, Stephen E. (2006) Habitat history improves prediction of biodiversity in rainforest fauna. Proceedings of the National Academy of Sciences of the United States of America, 103 (3). pp. 632-636.

Dowe, John Leslie, and Chapin, Melany H. (2006) Beccari's "Grande Nouveauté": the discovery, taxonomic history and typification of Pelagodoxa henryana. Palms, 50 (4). pp. 185-192.

Parsons, Jennifer, Cairns, Andi, Johnson, Christopher, Robson, Simon K.A., Shilton, Louise A., and Westcott, David A. (2006) Dietary variation in spectacled flying foxes (Pteropus conspicillatus) of the Australian Wet Tropics. Australian Journal of Zoology, 54. pp. 417-428.

Williams, David, Wolanski, Eric, and Spagnol, Simon (2006) Hydrodynamics of Darwin Harbour. In: Wolanski, Eric, (ed.) The Environment in Asia Pacific Harbours. Springer, Netherlands, pp. 461-476.

Wolanski, Eric (2006) Increasing trade and urbanisation of the Asia Pacific coast. In: Wolanski, Eric, (ed.) The Environment in Asia Pacific Harbours. Springer, Netherlands, pp. 1-13.

Wolanski, Eric (2006) Is harbour development ecologically sustainable? In: Wolanski, Eric, (ed.) The Environment in Asia Pacific Harbours. Springer, Netherlands, pp. 489-493.

Wolanski, Eric, McKinnon, A. David, Williams, David, and Alongi, Daniel M. (2006) An estuarine ecohydrology model of Darwin Harbour, Australia. In: Wolanski, Eric, (ed.) The Environment in Asia Pacific Harbours. Springer, Netherlands, pp. 477-488.

Prideaux, Bruce, and Kim, Seongseop (2006) The relationship between airline cabin service and national culture: a cabin crew perspective. In: Prideaux, Bruce, Moscardo, Gianna, and Laws, Eric, (eds.) Managing Tourism and Hospitality Services: theory and international applications. CABI, Oxfordshire, UK, pp. 218-224.

Guan, W.B., Kot, S.C., and Wolanski, E. (2005) 3-D fluid-mud dynamics in the Jiaojiang Estuary, China. Estuarine, Coastal and Shelf Science , 65 (4). pp. 747-762.

Thomas, C., Hart, B., Nicholson, A., Grace, M., Brodie, J., and Pollino, C. (2005) Development of criteria for simplifying ecological risk models. In: MODSIM05 International Conference on Modelling and Simulation, pp. 772-778. From: MODSIM05 International Conference on Modelling and Simulation, 12-15 December 2005, Melbourne, Australia.

Dowe, John Leslie (2005) Observations of palms made by the botanist and explorer Ludwig Leichhardt, during the Australian Overland Expedition of 1844-1845. Palms, 49 (4). pp. 167-182.

Wolanski, Eric, Fabricius, Katharina, Spagnol, Simon, and Brinkman, Richard (2005) Fine sediment budget on an inner-shelf coral-fringed island, Great Barrier Reef of Australia. Estuarine, Coastal and Shelf Science , 65 (1-2). pp. 153-158.

Wolanski, Eric, and De’ath, Glenn (2005) Predicting the impact of present and future human land-use on the Great Barrier Reef. Estuarine, Coastal and Shelf Science , 64 (2-3). pp. 504-508.

Cappo, Mike, De'ath, Glenn, Boyle, Steve, Aumend, James, Olbrich, Roland, Hoedt, Frank, Perna, Colton, and Brunskill, Gregg (2005) Development of a robust classifier of freshwater residence in barramundi (Lates calcarifer) life histories using elemental ratios in scales and boosted regression trees. Marine and Freshwater Research, 56 (5). pp. 713-723.

Frisch, Ashley, and Anderson, Trevor (2005) Physiological stress responses of two species of coral trout (Plectropomus leopardus and Plectropomus maculatus). Comparative Biochemistry and Physiology-Part A: molecular & integrative physiology, 140 (3). pp. 317-327.

Dixon, Ian, Douglas, Michael, Dowe, John, Burrows, Damien, and Townsend, Simon (2005) A rapid method for assessing the condition of riparian zones in the wet/dry tropics of northern Australia. In: Proceedings of the 4th Australian Stream Management Conference, pp. 173-178. From: The 4th Australian Stream Management Conference, 19-22 October 2004, Launceston, TAS, Australia.

McKenna, S.A., Betts, D.A., Pong, W.W., Govedich, F.R., and Barton, D.P. (2005) A redescription of the Australian leech Placobdelloides bancrofti with new records of its distribution. Journal of Parasitology, 91 (1). pp. 117-121.

Brodie, Jon, Fabricius, Katharina, De'ath, Glenn, and Okaji, Ken (2005) Are increased nutrient inputs responsible for more outbreaks of crown-of-thorns starfish? an appraisal of the evidence. Marine Pollution Bulletin, 51 (1-4). pp. 266-278.

Syvitski, James P.M., Harvey, Nick, Wolanski, Eric, Burnett, William C., Perillo, Gerardo M. E., Gornitz, Vivien, Arthurton, Russell K., Bokuniewicz, Henry, Campbell, Janet W., Cooper, Lee, Dunton, Kenneth, Gao, Shu, Hesp, Patrick P., Saito, Yoshiki, Salisbury, Joe, Snoussi, Maria, and Yim, Wyss W-S. (2005) Dynamics of the coastal zone. In: Crossland, C.J., Kremer, H.H., Lindeboom, H.J., Crossland , J.I. Marshall, and Le Tissier, M.D.A., (eds.) Coastal Fluxes in the Anthropocene. Global Change — The IGBP Series . Springer, Germany, pp. 39-94.

Perna, Colton, and Burrows, Damien (2005) Improved dissolved oxygen status following removal of exotic weed mats in important fish habitat lagoons of the tropical Burdekin River floodplain, Australia. Marine Pollution Bulletin, 51 (1). pp. 138-148.

Furnas, Miles, Mitchell, Alan, Skuza, Michelle, and Brodie, Jon (2005) In the other 90%: phytoplankton responses to enhanced nutrient availability in the Great Barrier Reef lagoon. Marine Pollution Bulletin, 51 (1). pp. 253-265.

Dowe, John Leslie (2005) Ludwig Leichhardt's Australian plant collections, 1842-1847. Austrobaileya, 7 (1). pp. 151-163.

O'Reagain, P.J., Brodie, J., Fraser, G., Bushell, J.J., Holloway, C.H., Faithful, J.W., and Haynes, D. (2005) Nutrient loss and water quality under extensive grazing in the upper Burdekin river catchment, North Queensland. Marine Pollution Bulletin, 51 (1). pp. 37-50.

Brodie, Jon E., and Mitchell, Alan W. (2005) Nutrients in Australian tropical rivers: changes with agricultural development and implications for receiving environments. Marine and Freshwater Research, 56 (3). pp. 279-302.

Wolanski, Eric, and Nhan, Nguyen Huu (2005) Oceanography of the Mekong River estuary. In: Chen, Zhongyuan, Saito, Yoshiki, and Goodbred Jr., Steven L., (eds.) Mega-deltas of Asia Geological Evolution and Human Impact. China Ocean Press, Beijing, China, pp. 113-115.

McKergow, Lucy A., Prosser, Ian P., Hughes, Andrew O., and Brodie, Jon (2005) Regional scale nutrient modelling: exports to the Great Barrier Reef World Heritage Area. Marine Pollution Bulletin, 51 (1). pp. 186-199.

Cooper, Michelle, Faithful, John W., and Shields, Graham (2005) Sediment dynamics of a large tropical river system: the Burdekin River and Lake Dalrymple, Australia. In: Proceedings of 10th International Symposium on the interactions between sediments and water, p. 198. From: 10th International Symposium on the interactions between sediments and water, 28 August - 2 September 2005, Bled, Slovenia.

Mitchell, C., Brodie, J., and White, I. (2005) Sediments, nutrients and pesticide residues in event flow conditions in streams of the Mackay Whitsunday Region, Australia. Marine Pollution Bulletin, 51 (1). pp. 23-36.

McKergow, Lucy A., Prosser, Ian P., Hughes, Andrew O., and Brodie, Jon (2005) Sources of sediment to the Great Barrier Reef World Heritage Area. Marine Pollution Bulletin, 51 (1). pp. 200-211.

Devlin, M.J., and Brodie, J. (2005) Terrestrial discharge into the Great Barrier Reef Lagoon: nutrient behavior in coastal waters. Marine Pollution Bulletin, 51 (1). pp. 9-22.

Faithful, John, and Finlayson, Wendy (2005) Water quality assessment for sustainable agriculture in the Wet Tropics: a community-assisted approach. Marine Pollution Bulletin, 51 (1-4). pp. 99-112.

Moss, Andrew, Brodie, Jon, and Furnas, Miles (2005) Water quality guidelines for the Great Barrier Reef World Heritage Area: a basis for development and preliminary values. Marine Pollution Bulletin, 51 (1). pp. 76-88.

Barfod, Anders S., and Dowe, John Leslie (2005) The enigmatic Australian fan-palm Licuala ramsayi. Palms, 49 (1). pp. 15-23.

Greiner, R., Herr, A., Brodie, J., and Haynes, D. (2005) A multi-criteria approach to Great Barrier Reef catchment (Queensland, Australia) diffuse-source pollution problem. Marine Pollution Bulletin, 51 (1). pp. 128-137.

Frisch, Ashley (2004) Sex-change and gonadal steroids in sequentially-hermaphroditic teleost fish. Reviews in Fish Biology and Fisheries, 14 (4). pp. 481-499.

Wolanski, E., Colin, P., Naithani, J., Deleersnijder, E., and Golbuu, Y. (2004) Large amplitude, leaky, island-generated, internal waves around Palau, Micronesia. Estuarine, Coastal and Shelf Science , 60 (4). pp. 705-716.

Wolanski, Eric, Williams, David, Spagnol, Simon, and Chanson, Hubert (2004) Undular tidal bore dynamics in the Daly Estuary, Northern Australia. Estuarine, Coastal and Shelf Science , 60 (4). pp. 629-636.

Connolly, N. M., Crossland, M.R., and Pearson, R.G. (2004) Effect of low dissolved oxygen on survival, emergence, and drift of tropical stream macroinvertebrates. Journal of the North American Benthological Society, 23 (2). pp. 251-270.

Brodie, Jon E., and Devlin, Michelle (2004) Exposure of Great Barrier Reef reefs to land-sourced contaminants: changes due to catchment agricultural development. In: Proceedings of the 10th International Coral Reef Symposium, p. 79. From: 10th International Coral Reef Symposium, 28 June - 2 July 2004, Okinawa, Japan.

Wolanski, Eric, Richmond, Robert H., and McCook, Laurence (2004) A model of the effects of land-based, human activities on the health of coral reefs in the Great Barrier Reef and in Fouha Bay, Guam, Micronesia. Journal of Marine Systems, 46 (1-4). pp. 133-144.

Burrows, Damien (2004) Aquatic ecosystems. In: McCullough, Marnie, and Musso, Barbara, (eds.) Healthy Rangelands: principles for sustainable systems. Focus on Australia's Burdekin rangelands. Tropical Savannas CRC, pp. 148-170.

Brinkman, R., Wolanski, E., and Spagnol, S. (2004) Field and model studies of the nepheloid layer in coastal waters of the Great Barrier Reef, Australia. In: Jirka, Gerhard H., and Uijttewaal, Wim S.J., (eds.) Shallow Flows. Taylor & Francis, London, UK, pp. 225-229.

Dowe, John L., and Mogea, Johanis P. (2004) New species of Livistona (Arecaceae) from New Guinea. Palms, 48 (4). pp. 197-203.

Jones, David L., and Dowe, John L. (2004) Nomenclatural changes for two Australian species of Livistona R. Br. (Arecaceae). Austrobaileya, 6 (4). pp. 979-981.

Dowe, John Leslie (2004) Taxonomic notes on palms (Arecaceae) in catalogues of the Brisbane Botanic Garden, Australia, of 1875 and 1885. Austrobaileya, 6 (4). pp. 967-972.

Wolanski, E., Spagnol, S., and Williams, D. (2004) The impact of damming the Ord River on the fine sediment budget in Cambridge Gulf, northwestern Australia. Journal of Coastal Research, 20 (3). pp. 801-807.

Pettit, N.E., and Dowe, J.L. (2003) Distribution and population structure of the vulnerable riparian palm Livistona lanuginosa A.N.Rodd (Arecaceae) in the Burdekin River catchment, north Queensland. Pacific Conservation Biology, 9 (3). pp. 207-214.

Brodie, Jon , and Furnas, Miles (2003) Status of nutrient and sediment inputs from great Barrier Reef catchments and impacts on the Reef. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.

Brodie, Jon E., McKergow, Lucy A., Prosser, Ian P., Furnas, Miles, Hughes, Andrew O., and Hunter, Heather (2003) Sources of sediment and nutrient exports to the Great Barrier Reef World Heritage Area. Report. Australian Centre for Tropical Freshwater Research, Townsville, Australia.

Wolanski, Eric, Brinkman, Richard, Spagnol, Simon, McAllister, Felicity, Steinberg, Craig, Skirving, William, and Deleersnijder, Eric (2003) Merging scales in models of water circulation: perspectives from the Great Barrier Reef. In: Lakhan, V.C., (ed.) Advances in Coastal Modeling. Elsevier Oceanography Series (67). Elsevier, pp. 411-429.

Fabricius, K.E., Wild, C., Wolanski, E., and Abele, D. (2003) Effects of transparent exopolymer particles and muddy terrigenous sediments on the survival of hard coral recruits. Estuarine, Coastal and Shelf Science , 57 (4). pp. 613-621.

Wolanski, E., Richmond, R.H., Davis, G., Deleersnijder, E., and Leben, R.R. (2003) Eddies around Guam, an island in the Mariana Islands group. Continental Shelf Research, 23 (10). pp. 991-1003.

Wolanski, E., and Spagnol, S. (2003) Dynamics of the turbidity maximum in King Sound, tropical Western Australia. Estuarine, Coastal and Shelf Science , 56 (5-6). pp. 877-890.

Wolanski, Eric, Richmond, Robert H., Davis, Gerald, and Bonito, Victor (2003) Water and fine sediment dynamics in transient river plumes in a small, reef-fringed bay, Guam. Estuarine, Coastal and Shelf Science , 56 (5-6). pp. 1029-1040.

Brodie, J., Mitchell, A., Furnas, M., Haynes, D., Waterhouse, J., Ghonim, S., Morris, S., Yorkston, H., and Audas, D. (2003) Developing catchment pollutant load targets for the protection of the Great Barrier Reef. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20-23 November 2001, Townsville, QLD, Australia.

Connor, Ron, Milsom, John, Melzer, Alistair, Butler, Barry M., Faithful, John W., Dennison, William, Lloyd, Trevor, and Swaine, Greg (2003) Ecosystem-based assessment and management of marine and estuarine systems at the Queensland Nickel Yabulu Refinery, Townsville. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.

Devlin, Michelle, Brodie, Jon, Waterhouse, Jane, Mitchell, Alan , Audas, Donna, and Haynes, David (2003) Exposure of Great Barrier Reef inner-shelf reefs to river-borne contaminants. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.

Brodie, Jon (2003) The Great Barrier Reef: 25 Years of management as a large marine ecosystem. In: Hempel, Gotthilf, and Sherman, Kenneth, (eds.) Large Marine Ecosystems of the World: trends in exploitation, protection, and research. Elsevier, The Netherlands, pp. 313-336.

Wolanski, Eric, Richmond, Robert, McCook, Laurence, and Sweatman, Hugh (2003) Mud, marine snow and coral reefs. American Scientist, 91 (1). pp. 44-51.

Wolanski, Eric, Marshall, Katie, and Spagnol, Simon (2003) Nepheloid Layer Dynamics in Coastal Waters of the Great Barrier Reef, Australia. Journal of Coastal Research, 19 (3). pp. 748-752.

Starcevich, Mark R., Lymbery, Alan J., and Doupe, Robert G. (2003) Potential environmental impacts from farming rainbow trout using inland saline water in Western Australia. Australasian Journal of Environmental Management, 10 (1). pp. 15-24.

Wolanski, Eric (2003) Review work: "Fine Sediment Dynamics in the Marine Environment" by J.C. WInterwerp & C.Kranenburg. Journal of Coastal Research, 19 (4). pp. 1131-1132.

Finlayson, C.M., and Lukacs, George P. (2003) Status of Wetlands in Northern Australia. In: Protecting the Values of Rivers, Wetlands and the Reef. From: 2nd National Conference on Aquatic Environments: Sustaining our Aquatic Environments - Implementing Solutions, 20 - 23 November 2001, Townsville, QLD, Australia.

Doupé, R.G., and Pettit, N.E. (2002) Ecological perspectives on regulation and water allocation for the Ord River, Western Australia. River Research and Applications: an international journal devoted to river research and management, 18 (3). pp. 307-320.

Wolanski, Eric (2002) Information technology in marine science. In: Field, John G., Hempel , Gotthilf, and Summerhayes, Colin P., (eds.) Oceans 2020: Science Trends and the Challenge of Sustainability. Island Press, USA, pp. 251-252.

Dowe, John L., and Barfod, Anders S. (2001) New species of Livistona R. Br. (Arecaceae) from north Queensland and Papua New Guinea. Austrobaileya, 6 (1). pp. 165-174.

Devlin, Michelle, Waterhouse, Jane, Taylor, Jeremy, and Brodie, Jon (2001) Flood plumes in the Great Barrier Reef : spatial and temporal patterns in composition and distribution. Report. Great Barrier Reef Marine Park Authority, Townsville, Australia.

Pearson, R.G., and Connolly, N.M. (2000) Nutrient enhancement, food quality and community dynamics in a tropical rainforest stream. Freshwater Biology, 43 (1). pp. 31-42.

Cairns, A., Richards, M., and Lukacs, G. (2000) Catchment study - Gustav Creek, Magnetic Island. Report. James Cook University, Townsville, QLD, Australia.

Kutt, Alex, and Schulz, Martin (2000) Distribution and habitat of the flute-nosed bat Murina florium (Chiroptera: Vespertilionidae) in the wet tropics of north-eastern Queensland. Australian Zoologist, 31 (3). pp. 458-467.

Dixon, Dale (2000) Flora and fauna survey of the vegetation and faunal habitats adjacent to the Mackay-Bucasia Road. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien (2000) Literature review of the potential impacts of grazing on aquatic and riparian ecosystems in the Australian dry tropical rangelands. Report. James Cook University, Townsville, QLD, Australia.

Faithful, John W., and Griffiths, Dilwyn J. (2000) Turbid flow through a tropical reservoir (Lake Dalrymple, Queensland, Australia): responses to a summer storm event. Lakes and Reservoirs: research and management, 5 (4). pp. 231-247.

Kutt, A., and Burrows, D. (1999) Cairns International Airport fauna surveys. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien, Faithful, John, Kutt, Alex, Tait, Jim, and Blunden, Lynda (1999) Environmental study of a proposed dam at Mount Douglas on the Belyando River. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A.S. (1999) High frequency modernization project Speed Creek Receive Station: additional flora survey. Report. James Cook University, Townsville, QLD, Australia.

Rasheed, Michael A. (1999) Recovery of experimentally created gaps within a tropical Zostera capricorni (Aschers.) seagrass meadow, Queensland Australia. Journal of Experimental Marine Biology and Ecology, 235 (2). pp. 183-200.

Burrows, Damien W. (1999) Review of buffer widths for Oonoonba School Lagoon. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W., and Kutt, Alex (1999) Review of environmental factors - Flinders Highway (Gardner Creek to Burra Range). Report. James Cook University, Townsville, QLD, Australia.

Werren, Garry L., and Burrows, Damien W. (1999) Review of environmental factors - Normanton Bridge. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1999) Review of environmental factors - Tully - Hull Road. Report. James Cook University, Townsville, QLD, Australia.

Fulton, Elizabeth, Kault, David, Mapstone, Bruce, and Sheaves, Marcus (1999) Spawning season influences on commercial catch rates: computer simulations and Plectropomus leopardus, a case in point. Canadian Journal of Fisheries and Aquatic Sciences, 56 (6). pp. 1096-1108.

Faithful, John W., and Cairns, Andi (1999) Townsville Ring Road (Douglas section). Review of environmental factors flora, fauna and water quality. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A.S. (1999) Vertebrate fauna survey of the Desert Uplands Bioregion: interim final report(data). Report. James Cook University, Townsville, QLD, Australia.

Butler, B., and Lukacs, G. (1999) Water quality planning Elliott main channel. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W., Pusey, Bradley, Werren, Garry, Walsh, Kerry, Kutt, Alex, Cumming, Russell, and Cohen, Martin (1999) An initial environmental assessment of water infrastructure options in the Burdekin Catchment. Report. James Cook University, Townsville, QLD, Australia.

Crees, M.R., Kapitzke, I.R., Smithers, S.G., and Pearson, R.G. (1998) Burdekin River Kierle Road bank remediation concept design. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W., Kutt, Alex S., and Kemp, Jeanette E. (1998) Burdekin catchment study – a desktop study of environmental issues associated with dam and irrigation area development. Report. James Cook University, Townsville, QLD, Australia.

Butler, Barry, and Tait, Jim (1998) DNR training course on bioaccumulation - workbook. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1998) FNQ 2010 regional environment strategy. Key waterways report. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A., and Kemp, J. (1998) Flora and fauna survey of the Inkerman and Molongle blocks, Burdekin River irrigation area, right bank. Report. James Cook University, Townsville, QLD, Australia.

Lukacs, George (1998) Jungara CMTS flora and fauna survey. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W., and Butler, Barry (1998) Literature review and scoping study of the potential downstream impacts of the proposed Nathan Dam on the Dawson River, Fitzroy River and offshore environments. Report. James Cook University, Townsville, QLD, Australia.

Pearson, Richard, and Connolly, Niall (1998) Macroinvertebrates as monitors of river health in the tropics. Report. James Cook University, Townsville, QLD, Australia.

Molony, B.W., and Sheaves, M.J. (1998) Otolith increment widths and lipid contents during starvation and recovery feeding in adult Ambassis vachelli (Richardson). Journal of Experimental Marine Biology and Ecology, 221. pp. 257-276.

Burrows, Damien W. (1998) PNG gas project. Wetland and watercourse crossing study. Cable Beach to Gladstone. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A., and Kemp, J. (1998) Reconnaissance flora and fauna survey of three areas near Bowen associated with the proposed Elliot Main Channel extension. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1998) Reed beds pump station and pipeline environmental review. Report. James Cook University, Townsville, QLD, Australia.

Lukacs, George (1998) Riverside Gardens: creek and recirculation system. Aquatic and riparian vegetation. Report. James Cook University, Townsville, QLD, Australia.

Sheaves, Marcus (1998) Spatial patterns in estuarine fish faunas in tropical Queensland: a reflection of interaction between long-term physical and biological processes? Marine and Freshwater Research, 49 (1). pp. 31-40.

Pearson, Richard, Butler, Barry, Nolen, Jacqui, Christidis, Faye, Connolly, Niall, Cairns, Andi, and Davis, Linda (1998) Stream ecosystems as monitors of tropical forest catchments. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A. (1998) Survey for northern hopping-mouse (Notomys aquilo) and marine turtle nesting at the proposed Cable Beach landfall, PNG gas project. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W., Tait, Jim P., and Webb, Alan C. (1998) A brief biological survey of Idalia Lagoon, Townsville. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A. (1997) Billwon Weir and Tinaroo Stage II impact assessment study: terrestrial fauna. Report. James Cook University, Townsville, QLD, Australia.

Thomas, M.O.W.G., and Kutt, A.S. (1997) Owl populations and habitat: factors that could impact populations of native owls in the sugarcane growing areas in Queensland. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1997) Papua New Guinea to Queensland Gas Pipeline wetland and watercourse crossing study Cape York to Gladstone. Report. James Cook University, Townsville, QLD, Australia.

Burrows, Damien W. (1997) Papua New Guinea to Queensland gas pipeline: butterfly desktop review. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A., and Burnett, S. (1997) Papua New Guinea to Queensland gas project: vertebrate fauna survey and review, Townsville to Gladstone. Report. James Cook University, Townsville, QLD, Australia.

Lukacs, G.P., and Weber, E. (1997) Seed germination requirements of four emergent macrophytes in North Queensland. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A.S. (1996) Chalumbin-Woree 275kv transmission line: flora and fauna assessment of Crowleys Creek, Cairns. Report. James Cook University, Townsville, QLD, Australia.

Butler, B.M., and Taylor, J.P. (1996) Comalco Weipa water quality investigation stage 1. Report. James Cook University, Townsville, QLD, Australia.

Lukacs, G.P. (1996) Comment on environmental issues surrounding WITF submissions - Mackay region. Report. James Cook University, Townsville, QLD, Australia.

Butler, Barry, Birtles, Alastair, Pearson, Richard, and Jones, Kim (1996) Ecotourism, water quality and wet tropics streams. Report. James Cook University, Townsville, QLD, Australia.

Connolly, Niall, Doak, Naomi, and Pearson, Richard (1996) Environmental literature scan of the Barron River Catchment. Report. James Cook University, Townsville, QLD, Australia.

Crees, Mark, and Butler, Barry (1996) Feasibilty of using constructed wetlands for the treatment of effluent at Horseshoe Bay. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A.S. (1996) Great Palm Island proposed Francis Creek dam. Draft environmental impact statement: supplementary fauna survey. Report. James Cook University, Townsville, QLD, Australia.

Sheaves, M.J. (1996) Habitat-specific distributions of some fishes in a tropical estuary. Marine and Freshwater Research, 47 (6). pp. 827-830.

Kutt, A. (1996) High frequency modernisation project: flora and fauna assessment. Report. James Cook University, Townsville, QLD, Australia.

Sampson, K., and Lukacs, G.P. (1996) Indicator development - state of the environment reporting for Far North Queensland. Report. James Cook University, Townsville, QLD, Australia.

Clayton, P.D., and Pearson, R.G. (1996) Instream effects of dunder application to canefields in the Sarina region, Queensland: continued monitoring. Report. James Cook University, Townsville, QLD, Australia.

Burrows, D.W., Kutt, A.S., and Cumming, R.J. (1996) Pandora gas pipeline Palmer River to Townsville section. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A., Burrows, D., and Cummings, R. (1996) Pandora onshore gas pipeline flora and fauna studies: Palmer River to Townsville. Report. James Cook University, Townsville, QLD, Australia.

Kutt, A.S. (1996) Ross Island development, Townsville, baseline studies: an investigation of the mixed flying fox camp and ibis colony, potential impacts and recommendations for monitoring. Report. James Cook University, Townsville, QLD, Australia.

Lukacs, G., and Skull, S. (1996) Townsville City Council regional growth options study. Conservation priorities. Report. James Cook University, Townsville, QLD, Australia.

Lukacs, G. (1996) Wetlands of the Townsville area. Report. James Cook University, Townsville, QLD, Australia.

Sheaves, Marcus John (1995) Effect of design modifications and soak time variations on Antillean-Z fish trap performance in a tropical estuary. Bulletin of Marine Science, 56 (2). pp. 475-489.

Sheaves, M.J. (1993) Patterns of movement of some fishes within an estuary in Tropical Australia. Australian Journal of Marine and Freshwater Research, 44 (6). pp. 867-880.

Sheaves, M.J. (1992) Patterns of distribution and abundance of fishes in different habitats of a mangrove-lined tropical estuary, as determined by fish trapping. Australian Journal of Marine and Freshwater Research, 43 (6). pp. 1461-1479.

Shelley, C.C., Glazebrook, J.S., Turak, E., Winsor, L., and Denton, G.R.W. (1988) Trematode (Digenea: Bucephalidae) infection in the burrowing clam Tridacna crocea from the Great Barrier Reef. Diseases of Aquatic Organisms, 4. pp. 143-147.

Mitchell, Alan, Brodie, Jon, and Furnas, Miles (2010) Report on AIMS river nutrient data collected from downstream sites in major Queensland rivers draining to the Great Barrier Reef lagoon, 1987-2000. Report. James Cook University, Townsville, QLD, Australia. (Unpublished)

Devlin, Michelle (2005) Spatial and temporal patterns of flood plumes in the Great Barrier Reef, Australia. PhD thesis, James Cook University.

Webb, Alan Charles (2003) The ecology of invasions of non-indigenous freshwater fishes in northern Queensland. PhD thesis, James Cook University.

Perna, Colton Nicholas (2003) Impacts of agriculture and restoration of the habitat values, water quality and fish assemblages of a tropical floodplain. Masters (Research) thesis, James Cook University.

Burrows, Damien Wayne (2003) The role of insect leaf herbivory on the mangroves Avicennia marina and Rhizophora stylosa. PhD thesis, James Cook University.

Wolanski, Eric (2002) Damming the Mekong and Ord River estuaries. 7th International Coastal Symposium. p. 1. (Unpublished)

This list was generated on Wed Mar 22 22:28:40 2017 AEST.