Edelman, Alexandra, Allen, Tammy, Devine, Susan, Horwood, Paul F., McBryde, Emma s., Mudd, Julie, Warner, Jeffrey, and Topp, Stephanie M. (2024) "Hospitals respond to demand. Public health needs to respond to risk": health system lessons from a case study of northern Queensland’s COVID-19 surveillance and response. BMC Health Services Research, 24. 104.

Henderson, Alec S., Hickson, Roslyn I., Furlong, Morgan, McBryde, Emma S., and Meehan, Michael T. (2024) Reproducibility of COVID-era infectious disease models. Epidemics, 46. 100743.

Foster, J'Belle, Marais, Ben J., Mendez, Diana, and McBryde, Emma S. (2023) Critical Review of Tuberculosis Diagnosis in Children from Papua New Guinea Presenting to Health Facilities in the Torres Strait Islands, Australia. Microorganisms, 11 (12). 2947.

Basseal, J.M., Bennett, C.M., Collignon, P., Currie, B.J., Durrheim, D.N., Leask, J., McBryde, E.S., McIntyre, P., Russell, F.M., Smith, D.W., Sorrell, T.C., and Marais, B.J. (2023) Key lessons from the COVID-19 public health response in Australia. The Lancet Regional Health - Western Pacific, 30. 100616.

Ogunlade, Samson T., Adekunle, Adeshina I., Meehan, Michael T., and McBryde, Emma S. (2023) Quantifying the impact of Wolbachia releases on dengue infection in Townsville, Australia. Scientific Reports, 13. 14932.

Meehan, Michael T., Henderson, Alec S., Steinig, Eike, McBryde, Emma S., and Duchene, Sebastian (2023) Replicating superspreader dynamics with birth-death phylodynamic models. In: [Presented at the 9th International Conference on Infectious Disease Dynamics]. From: Epidemics 9: 9th International Conference on Infectious Disease Dynamics, 28 November - 1 December 2023, Bologna, Italy.

Meehan, Michael T., Hughes, Angus, Ragonnet, Romain R., Adekunle, Adeshina I., Trauer, James M., Jayasundara, Pavithra, McBryde, Emma S., and Henderson, Alec S. (2023) Replicating superspreader dynamics with compartmental models. Scientific Reports, 13. 15319.

Ogunlade, Samson T., Meehan, Michael T., Adekunle, Adeshina I., and McBryde, Emma S. (2023) A Systematic Review of Mathematical Models of Dengue Transmission and Vector Control: 2010–2020. Viruses, 15 (1). 254.

Foster, J'Belle, Mendez, Diana, Marais, Ben, Peniyamina, Dunstan, and McBryde, Emma (2023) Time to commencement of effective treatment in patients with drug-resistant tuberculosis diagnosed in the Torres Strait–Papua New Guinea cross-border region. Rural and Remote Health, 23. 7165.

Adegboye, Oyelola A., Alele, Faith O., Pak, Anton, Castellanos, Maria E., Abdullahi, Mohammed, Okeke, Malachy I., Emeto, Theophilus I., and McBryde, Emma S. (2023) A resurgence and re-emergence of diphtheria in Nigeria, 2023. Therapeutic Advances in Infectious Disease, 10.

Kuddus, Md Abdul, McBryde, Emma, Adekunle, Adeshina, and Meehan, Michael (2022) Analysis and simulation of a two-strain disease model with nonlinear incidence. Chaos, Solitons & Fractals, 155. 111637.

Hughes, Angus, Ragonnet, Romain, Jayasundara, Pavithra, Ngo, Hoang Anh, de Lara-Tuprio, Elvira, Estuar, Maria Regina Justina, Teng, Timothy Robin, Boon, Law Kian, Peariasamy, Kalaiarasu M., Chong, Zhuo Lin, Ghazali, Izzuna Mudla M., Fox, Greg J., Nguyen, Thu Anh, Le, Linh Vi, Abayawardana, Milinda, Shipman, David, McBryde, Emma S., Meehan, Michael T., Caldwell, Jamie M., and Trauer, James M. (2022) COVID-19 collaborative modelling for policy response in the Philippines, Malaysia and Vietnam. The Lancet Regional Health - Western Pacific, 29. 100563.

Foster, J'Belle, Mendez, Diana, Marais, Ben J., Denholm, Justin T., Peniyamina, Dunstan, and McBryde, Emma S. (2022) Critical Consideration of Tuberculosis Management of Papua New Guinea Nationals and Cross-Border Health Issues in the Remote Torres Strait Islands, Australia. Tropical Medicine and Infectious Disease, 7 (9). 251.

Javati, Sarah, Guernier-Cambert, Vanina, Jonduo, Marinjho, Robby, Sinafa, Kimopa, Jobb, Maure, Tobias, McBryde, Emma S., Pomat, William, Aplin, Ken, Helgen, Kristofer M., Abdad, Mohammad Yazid, and Horwood, Paul (2022) Diversity of Leptospira spp. in bats and rodents from Papua New Guinea. Transboundary and Emerging Diseases, 69 (6). pp. 4048-4054.

Ragonnet, Romain, Williams, Bridget M., Largen, Angela, Nasa, Joaquin, Jack, Tom, Langinlur, Mailynn K., Ko, Eunyoung, Rahevar, Kalpeshsinh, Islam, Tauhid, Denholm, Justin T., Marais, Ben J., Marks, Guy B., McBryde, Emma S., and Trauer, James M. (2022) Estimating the long-term effects of mass screening for latent and active tuberculosis in the Marshall Islands. International Journal of Epidemiology, 51 (5). pp. 1433-1445.

Kuddus, Md Abdul, McBryde, Emma S., Adekunle, Adeshina I., White, Lisa J., and Meehan, Michael T. (2022) Mathematical analysis of a two-strain tuberculosis model in Bangladesh. Scientific Reports, 12. 3634.

Dale, Katie D., Abayawardana, Milinda J., McBryde, Emma S., Trauer, James M., and Carvalho, Natalie (2022) Modeling the Cost-Effectiveness of Latent Tuberculosis Screening and Treatment Strategies in Recent Migrants to a Low-Incidence Setting. American Journal of Epidemiology, 191 (2). pp. 255-270.

Ogunlade, Samson T., Adekunle, Adeshina I., McBryde, Emma S., and Meehan, Michael T. (2022) Modelling the ecological dynamics of mosquito populations with multiple co-circulating Wolbachia strains. Scientific Reports, 12. 20826.

Steinig, Eike, Duchene, Sebastian, Aglua, Izzard, Greenhill, Andrew, Ford, Rebecca, Yoannes, Mition, Jaworski, Jan, Drekore, Jimmy, Urakoko, Bohu, Poka, Harry, Wurr, Clive, Ebos, Eri, Nangen, David, Manning, Laurens, Laman, Moses, Firth, Cadhla, Smith, Simon, Pomat, William, Tong, Steven Y.C., Coin, Lachlan, McBryde, Emma, and Horwood, Paul (2022) Phylodynamic Inference of Bacterial Outbreak Parameters Using Nanopore Sequencing. Molecular Biology and Evolution, 39 (3). msac040.

Steinig, Eike, Aglua, Izzard, Duchene, Sebastian, Meehan, Michael T., Yoannes, Mition, Firth, Cadhla, Jaworski, Jan, Drekore, Jimmy, Urakoko, Bohu, Poka, Harry, Wurr, Clive, Ebos, Eri, Nangen, David, Muller, Elke, Mulvey, Peter, Jackson, Charlene, Blomfeldt, Anita, Vangstein Aamot, Hege, Laman, Moses, Manning, Laurens, Earls, Megan, Coleman, David C., Greenhill, Andrew, Ford, Rebecca, Stegger, Marc, Ali Syed, Muhammad, Jamil, Bushra, Monecke, Stefan, Ehricht, Ralf, Smith, Simon, Pomat, William, Horwood, Paul, Tong, Steven Y.C., and McBryde, Emma (2022) Phylodynamic signatures in the emergence of community-associated MRSA. Proceedings of the National Academy of Sciences of the United States of America, 119 (45). e2204993119.

Foster, J'Belle, Mendez, Diana, Marais, Ben J., Peniyamina, Dunstan, and McBryde, Emma S. (2022) Predictors of unfavourable treatment outcome in patients diagnosed with drug-resistant tuberculosis in the Torres Strait / Papua New Guinea border region. PLoS ONE, 17 (12). e0266436.

Pak, Anton, Adegboye, Oyelola A., and McBryde, Emma S. (2021) Are we better-off? The benefits and costs of Australian COVID-19 lockdown. Frontiers in Public Health, 9. 798478.

Adegboye, Oyelola A., Adekunle, Adeshina I., Pak, Anton, Gayawan, Ezra, Leung, Denis H.Y., Rojas, Diana P., Elfaki, Faiz, McBryde, Emma S., and Eisen, Damon P. (2021) Change in outbreak epicentre and its impact on the importation risks of COVID-19 progression: a modelling study. Travel Medicine and Infectious Disease, 40. 101988.

Pak, Anton, McBryde, Emma, and Adegboye, Oyelola A. (2021) Does high public trust amplify compliance with stringent COVID-19 government health guidelines? A multi-country analysis using data from 102,627 individuals. Risk Management and Healthcare Policy, 14. pp. 293-302.

Eisen, Damon P., Leder, Karin, Woods, Robyn L., Lockery, Jessica E., McGuinness, Sarah L., Wolfe, Rory, Pilcher, David, Moore, Elizabeth M., Shastry, Adithya, Nelson, Mark R., Reid, Christopher M., McNeil, John J., and McBryde, Emma S. (2021) Effect of aspirin on deaths associated with sepsis in healthy older people (ANTISEPSIS): a randomised, double-blind, placebo-controlled primary prevention trial. The Lancet Respiratory Medicine, 9 (2). pp. 186-195.

Shaweno, Debebe, Trauer, James M., Doan, Tan N., Denholm, Justin T., and McBryde, Emma S. (2021) Geospatial clustering and modelling provide policy guidance to distribute funding for active TB case finding in Ethiopia. Epidemics, 36. 100470.

Pak, A., Eisen, D.P., McBryde, E.S., and Adegboye, O.A. (2021) Hospitalisation for lower respiratory tract infection is associated with an increased incidence of acute myocardial infarction and stroke in tropical Northern Australia. Scientific Reports, 11. 6862.

Pak, Anton, Adegboye, Oyelola A., Eisen, Damon P., and McBryde, Emma S. (2021) Hospitalisations related to lower respiratory tract infections in Northern Queensland. Australian and New Zealand Journal of Public Health, 45 (5). pp. 430-436.

Kuddus, Md Abdul, McBryde, Emma S., Adekunle, Adeshina I., White, Lisa J., and Meehan, Michael T. (2021) Mathematical analysis of a two-strain disease model with amplification. Chaos Solitons and Fractals, 143. 110594.

McBryde, Emma, Meehan, Michael T., Caldwell, Jamie M., Adekunle, Adeshina I., Ogunlade, Samson T., Kuddus, Md Abdul, Ragonnet, Romain, Jayasundara, Pavithra, Trauer, James M., and Cope, Robert C. (2021) Modelling direct and herd protection effects of vaccination against the SARS-CoV-2 Delta variant in Australia. Medical Journal of Australia, 215 (9). pp. 427-432.

Ragonnet, Romain, Flegg, Jennifer A., Brilleman, Samuel L., Tiemersma, Edine W., Melsew, Yayehirad A., McBryde, Emma S., and Trauer, James M. (2021) Revisiting the Natural History of Pulmonary Tuberculosis: A Bayesian Estimation of Natural Recovery and Mortality Rates. Clinical Infectious Diseases, 73 (1). e88-e96.

Kuddus, Md Abdul, Meehan, Michael T., Sayem, Md. Abu, and McBryde, Emma S. (2021) Scenario analysis for programmatic tuberculosis control in Bangladesh: a mathematical modelling study. Scientific Reports, 11. 4354.

Jayasundara, Pavithra, Peariasamy, Kalaiarasu M., Law, Kian Boon, Abd Rahim, Ku Nurhasni Ku, Lee, Sit Wai, Ghazali, Izzuna Mudla M., Abayawardana, Milinda, Linh-Vi, Le, Khalaf, Rukun K. S., Razali, Karina, Le, Xuan, Chong, Zhuo Lin, McBryde, Emma S., Meehan, Michael T., Caldwell, Jamie M., Ragonnet, Romain, and Trauer, James M. (2021) Sustaining effective COVID-19 control in Malaysia through large-scale vaccination. Epidemics, 37. 100517.

Trauer, James M., Marais, Ben J., Ragonnet, Romain, Savulescu, Julian, and McBryde, Emma (2021) Time for a clear national COVID-19 strategy. Medical Journal of Australia, 214 (2). 94-94.e1.

Trauer, James M., Kawai, Andrew, Coussens, Anna K., Datta, Manjula, Williams, Bridget M., McBryde, Emma S., and Ragonnet, Romain (2021) Timing of Mycobacterium tuberculosis exposure explains variation in BCG effectiveness: A systematic review and meta-analysis. Thorax, 76 (11). pp. 1131-1141.

Adegboye, Oyelola A., McBryde, Emma S., and Eisen, Damon P. (2021) Tropical Australian health-data linkage shows excess mortality following severe infectious disease is present in the short-term and long-term after hospital discharge. Healthcare, 9 (7). 901.

Trauer, James M., Williams, Bridget, Laemmle-Ruff, Ingrid, Horyniak, Danielle, Caplice, Lila V.Soares, McBryde, Emma S., Majumdar, Suman S., Graham, Stephen, and Hellard, Margaret E. (2021) Tuberculosis in migrants to Australia: Outcomes of a national screening program. The Lancet Regional Health - Western Pacific, 10. 100135.

Foster, J'Belle, Marais, Ben, Martin, Rotona L., Peniyamina, Dunstan, Mendez, Diana, Warner, Jeffrey, and McBryde, Emma (2021) Tuberculosis in the Torres Strait: the lady doth test too much. Rural and Remote Health, 21 (1). 6317.

Estill, Janne, Islam, Tauhid, Houben, Rein M.G.J., Rudman, Jamie, Ragonnet, Romain, McBryde, Emma S., Trauer, James M., Orel, Erol, Nguyen, Anh Tuan, Rahevar, Kalpeshsinh, Morishita, Fukushi, Oh, Kyung Hyun, Raviglione, Mario C., and Keiser, Olivia (2021) Tuberculosis in the Western Pacific Region: Estimating the burden of disease and return on investment 2020–2030 in four countries. The Lancet Regional Health - Western Pacific, 11. 100147.

Caldwell, Jamie M., de Lara-Tuprio, Elvira, Estuar, Maria Regina Justina E., Sarmiento, Raymond Francis R., Abayawardana, Milinda, Leong, Robert Neil F., Gray, Richard T., Wood, James G., Le, Linh-Vi, McBryde, Emma S., Ragonnet, Romain, and Trauer, James M. (2021) Understanding COVID-19 dynamics and the effects of interventions in the Philippines: a mathematical modelling study. Lancet Regional Health - Western Pacific, 14. 100211.

Trauer, James M., Lydeamore, Michael J., Dalton, Gregory W., Pilcher, David, Meehan, Michael T., McBryde, Emma S., Cheng, Allen C., Sutton, Brett, and Ragonnet, Romain (2021) Understanding how Victoria, Australia gained control of its second COVID-19 wave. Nature Communications, 12. 6266.

Caldwell, Jamie M., Le, Xuan, McIntosh, Lorin, Meehan, Michael T., Ogunlade, Samson, Ragonnet, Romain, O'Neill, Genevieve K., Trauer, Tom, and McBryde, Emma S. (2021) Vaccines and variants: modelling insights into emerging issues in COVID-19 epidemiology. Paediatric Respiratory Reviews, 39. pp. 32-39.

Ogunlade, Samson, Meehan, Michael, Adekunle, Adeshina I., Rojas Alvarez, Diana P., Adegboye, Oyelola A., and McBryde, Emma S. (2021) A review: Aedes-borne arboviral infections, controls and Wolbachia-based strategies. Vaccines, 9 (1). 32.

Adekunle, Adeshina, Meehan, Michael, Rojas-Alvarez, Diana, Trauer, James, and McBryde, Emma (2020) Delaying the COVID‐19 epidemic in Australia: evaluating the effectiveness of international travel bans. Australian and New Zealand Journal of Public Health, 44 (4). pp. 257-259.

Alene, Kefyalew Addis, Viney, Kerri, Gray, Darren J., McBryde, Emma S., Xu, Zuhui, and Clements, Archie C.A. (2020) Development of a risk score for prediction of poor treatment outcomes among patients with multidrug-resistant tuberculosis. PLoS ONE, 15 (1). e0227100.

Price, David J., Shearer, Freya M., Meehan, Michael T., McBryde, Emma, Moss, Robert, Golding, Nick, Conway, Eamon J., Dawson, Peter, Cromer, Deborah, Wood, James, Abbott, Sam, McVernon, Jodie, and Mccaw, James M. (2020) Early analysis of the Australian COVID-19 epidemic. eLife, 9. e58785.

Pak, Anton, Adegboye, Oyelola A., Adekunle, Adeshina I., Rahman, Kazi M., McBryde, Emma S., and Eisen, Damon P. (2020) Economic consequences of the COVID-19 outbreak: the need for epidemic preparedness. Frontiers in Public Health, 8. 241.

Adegboye, Oyelola A., McBryde, Emma S., and Eisen, Damon P. (2020) Epidemiological analysis of association between lagged meteorological variables and pneumonia in wet-dry tropical North Australia, 2006–2016. Journal of Exposure Science & Environmental Epidemiology, 30. pp. 448-458.

Golding, Nick, Price, David J., Shearer, Freya M., Moss, Robert, Meehan, Michael T., McBryde, Emma, McVernon, Jodie, and Mccaw, James M. (2020) Estimating temporal variation in transmission of COVID-19 and adherence to social distancing measures in Australia: technical report 5th May 2020. Report. Doherty Institute, Melbourne, VIC, Australia.

Price, David J., Shearer, Freya M., Meehan, Michael, McBryde, Emma, Golding, Nick, McVernon, Jodie, and Mccaw, James (2020) Estimating the case detection rate and temporal variation in transmission of COVID-19 in Australia: Technical Report 14th April 2020. Report. Doherty Institute, Melbourne, VIC, Australia.

Wangdi, Kinley, Sarma, Haribondu, Leaburi, John, McBryde, Emma, and Clements, Archie C.A. (2020) Evaluation of the malaria reporting system supported by the District Health Information System 2 in Solomon Islands. Malaria Journal, 19. 372.

Adekunle, A.I., Adegboye, O.A., Gayawan, E., and McBryde, E.S. (2020) Is Nigeria really on top of COVID-19? Message from effective reproduction number. Epidemiology and Infection, 148. e166.

Thompson, Robin N., Hollingsworth, T. Déirdre, Isham, Valerie, Arribas-Bel, Daniel, Ashby, Ben, Britton, Tom, Challenor, Peter, Chappell, Lauren H.K., Clapham, Hannah, Cunniffe, Nik J., Dawid, A. Philip, Donnelly, Christl A., Eggo, Rosalind M., Funk, Sebastian, Gilbert, Nigel, Glendinning, Paul, Gog, Julia R., Hart, William S., Heesterbeek, Hans, House, Thomas, Keeling, Matt, Kiss, István Z., Kretzschmar, Mirjam E., Lloyd, Alun L., McBryde, Emma S., McCaw, James M., McKinley, Trevelyan J., Miller, Joel C., Morris, Martina, O’Neill, Philip D., Parag, Kris V., Pearson, Carl A.B, Pellis, Lorenzo, Pulliam, Juliet R.C., Ross, Joshua V., Tomba, Gianpaolo Scalia, Silverman, Bernard W., Struchiner, Claudio J., Tildesley, Michael J., Trapman, Pieter, Webb, Cerian R., Mollison, Denis, and Restif, Olivier (2020) Key questions for modelling COVID-19 exit strategies. Proceedings of the Royal Society of London Series B, Biological Sciences, 287 (1932).

Eisen, Damon P., McBryde, Emma S., Vasanthakumar, Luke, Murray, Matthew, Harings, Miriam, and Adegboye, Oyelola (2020) Linking administrative data sets of inpatient infectious diseases diagnoses in far North Queensland: a cohort profile. BMJ Open, 10. e034845.

Kuddus, Md Abdul, Meehan, Michael T., White, Lisa J., McBryde, Emma S., and Adekunle, Adeshina I. (2020) Modeling drug-resistant tuberculosis amplification rates and intervention strategies in Bangladesh. PLoS ONE, 15 (7). e0236112.

Ogunlade, Samson T., Adekunle, Adeshina I., Meehan, Michael T., Rojas, Diana P., and McBryde, Emma S. (2020) Modeling the potential of wAu-Wolbachia strain invasion in mosquitoes to control Aedes-borne arboviral infections. Scientific Reports, 10. 16812.

Meehan, Michael T., Rojas, Diana P., Adekunle, Adeshina I., Adegboye, Oyelola A., Caldwell, Jamie M., Turek, Evelyn, Williams, Bridget, Trauer, James M., and McBryde, Emma S. (2020) Modelling insights into the COVID-19 pandemic. Paediatric Respiratory Reviews, 35. pp. 64-69.

Fox, Gregory J., Trauer, James M., and McBryde, Emma (2020) Modelling the impact of COVID-19 on intensive care services in New South Wales. Medical Journal of Australia, 212 (10). pp. 468-469.

Meehan, Michael T., Cope, Robert C., and McBryde, Emma S. (2020) On the probability of strain invasion in endemic settings: accounting for individual heterogeneity and control in multi-strain dynamics. Journal of Theoretical Biology, 487. 110109.

McBryde, Emma S., Meehan, Michael T., Adegboye, Oyelola A., Adekunle, Adeshina I., Caldwell, Jamie M., Pak, Anton, Rojas, Diana P., Williams, Bridget M., and Trauer, James M. (2020) Role of modelling in COVID-19 policy development. Paediatric Respiratory Reviews, 35. pp. 57-60.

Kuddus, Md Abdul, Tynan, Elizabeth, and McBryde, Emma (2020) Urbanization: a problem for the rich and the poor? Public Health Reviews, 41. 1.

Le, Thu T.K., Tran, Thuy T.B., Ho, Huong T.M., Vu, An T.L., McBryde, Emma, and Lopata, Andreas L. (2020) The predominance of seafood allergy in Vietnamese adults: results from the first population-based questionnaire survey. World Allergy Organization Journal, 13 (3).

McBryde, Emma (2020) The value of early transmission dynamic studies in emerging infectious diseases. Lancet Infectious Diseases, 20 (5). pp. 512-513.

Doan, Tan N., Fox, Greg J., Meehan, Michael T., Scott, Nick, Ragonnet, Romain, Viney, Kerri, Trauer, James M., and McBryde, Emma S. (2019) Cost-effectiveness of 3 months of weekly rifapentine and isoniazid compared with other standard treatment regimens for latent tuberculosis infection: a decision analysis study. Journal of Antimicrobial Chemotherapy, 74 (1). pp. 218-227.

Bainomugisa, Arnold, Pandey, Sushi, Donnan, Ellen, Simpson, Graham, Foster, J'Belle, Lavu, Evelyn, Hiasihri, Stenard, McBryde, Emma S., Moke, Rendi, Vincent, Steven, Sintchenko, Vitali, Marais, Ben J., Coin, Lachlan J.M., and Coulter, Christopher (2019) Cross-border movement of highly drug-resistant Mycobacterium tuberculosis from Papua New Guinea to Australia through Torres Strait Protected Zone, 2010-2015. Emerging Infectious Diseases, 25 (3). pp. 406-415.

Kuddus, Md Abdul, McBryde, Emma S., and Adegboye, Oyelola A. (2019) Delay effect and burden of weather related tuberculosis cases in Rajshahi province, Bangladesh, 2007–2012. Scientific Reports, 9. 12720.

Guernier-Cambert, Vanina, Diefenbach-Elstob, Tanya, Klotoe, Bernice J., Burgess, Graham, Pelowa, Daniel, Dowi, Robert, Gula, Bisato, McBryde, Emma S., Refrégier, Guislaine, Rush, Catherine, Sola, Christophe, and Warner, Jeffrey (2019) Diversity of Mycobacterium tuberculosis in the Middle Fly District of Western Province, Papua New Guinea: microbead-based spoligotyping using DNA from Ziehl-Neelsen-stained microscopy preparations. Scientific Reports, 9. 15549.

Meehan, Michael T., Cocks, Daniel G., Mueller, Johannes, and McBryde, Emma S. (2019) Global stability properties of a class of renewal epidemic models. Journal of Mathematical Biology, 78 (6). pp. 1713-1725.

Palagyi, Anna, Marais, Ben J., Abimbola, Seye, Topp, Stephanie M., McBryde, Emma S., and Negin, Joel (2019) Health system preparedness for emerging infectious diseases: a synthesis of the literature. Global Public Health, 14 (12). pp. 1847-1868.

Melsew, Yayehirad A., Adekunle, Adeshina I., Cheng, Allen C., McBryde, Emma S., Ragonnet, Romain, and Trauer, James M. (2019) Heterogeneous infectiousness in mathematical models of tuberculosis: a systematic review. Epidemics, 30. 100374.

Alene, Kefyalew Addis, Viney, Kerri, Gray, Darren J., McBryde, Emma S., Wagnew, Maereg, and Clements, Archie C.A. (2019) Mapping tuberculosis treatment outcomes in Ethiopia. BMC Infectious Diseases, 19. 474.

Adekunle, Adeshina I., Meehan, Michael T., and McBryde, Emma S. (2019) Mathematical analysis of a Wolbachia invasive model with imperfect maternal transmission and loss of Wolbachia infection. Infectious Disease Modelling, 4. pp. 265-285.

Diefenbach-Elstob, Tanya, Guernier, Vanina, Burgess, Graham, Pelowa, Daniel, Dowi, Robert, Gula, Bisato, Puri, Munish, Pomat, William, McBryde, Emma, Plummer, David, Rush, Catherine, and Warner, Jeffrey (2019) Molecular evidence of drug-resistant tuberculosis in the Balimo region of Papua New Guinea. Tropical Medicine and Infectious Disease, 4 (1). 33.

Ragonnet, Romain, Trauer, James M., Geard, Nicholas, Scott, Nick, and McBryde, Emma S. (2019) Profiling Mycobacterium tuberculosis transmission and the resulting disease burden in the five highest tuberculosis burden countries. BMC Medicine, 17. 208.

Alene, Kefyalew Addis, Viney, Kerri, McBryde, Emma S., Gray, Darren J., Melku, Mulugeta, and Clements, Archie C.A. (2019) Risk factors for multidrug-resistant tuberculosis in northwest Ethiopia: a case-control study. Transboundary and Emerging Diseases, 66 (4). pp. 1611-1618.

Diefenbach-Elstob, Tanya, Guernier-Cambert, Vanina, Gula, Bisato, Dowi, Robert, Pelowa, Daniel, Pomat, William, Rush, Catherine, Plummer, David, McBryde, Emma, and Warner, Jeffrey (2019) Spatial distribution of tuberculosis in a rural region of Western Province, Papua New Guinea. Western Pacific Surveillance and Response, 10 (4). pp. 1-8.

Doan, T.N., Varleva, T., Zamfirova, M., Tyufekchieva, M., Keshelava, A., Hristov, K., Yaneva, A., Gadzheva, B., Zhang, S., Irbe, S., Ragonnet, R., McBryde, E.S., and Trauer, J.M. (2019) Strategic investment in tuberculosis control in the Republic of Bulgaria. Epidemiology and Infection, 147. e304.

Ragonnet, Romain, Underwood, Frank, Doan, Tan, Rafai, Eric, Trauer, James, and McBryde, Emma (2019) Strategic planning for tuberculosis control in the Republic of Fiji. Tropical Medicine and Infectious Disease, 4 (2). 71.

Trauer, James M., Dodd, Peter J., Gomes, Gabriela M., Gomez, Gabriela B., Houben, Rein M.G.J., McBryde, Emma S., Melsew, Yayehirad A., Menzies, Nicholas A., Arinaminpathy, Nimalan, Shrestha, Sourya, and Dowdy, David W. (2019) The importance of heterogeneity to the epidemiology of tuberculosis. Clinical Infectious Diseases, 69 (1). pp. 159-166.

Melsew, Yayehirad A., Gambhir, Manoj, Cheng, Allen C., McBryde, Emma S., Denholm, Justin T., Tay, Ee Laine, and Trauer, James M. (2019) The role of super-spreading events in Mycobacterium tuberculosis transmission: evidence from contact tracing. BMC Infectious Diseases, 19. 244.

Doan, Nhut Tan, Cao, Pengxing, Emeto, Theophilus, Mccaw, James, and McBryde, Emma (2018) Predicting the outcomes of new short-course regimens for multidrug-resistant tuberculosis using intrahost and pharmacokinetic-pharmacodynamic modelling. In: Abstracts from the 28th European Congress of Clinical Microbiology and Infectious Diseases. O0235. From: ECCMID: 28th European Congress of Clinical Microbiology and Infectious Diseases, 21 -24 April 2018, Madrid, Spain.

Guernier, Vanina, Diefenbach-Elstob, Tanya, Pelowa, Daniel, Pollard, Sanda, Burgess, Graham, McBryde, Emma S., and Warner, Jeffrey (2018) Molecular diagnosis of suspected tuberculosis from archived smear slides from the Balimo region, Papua New Guinea. International Journal of Infectious Diseases, 67. pp. 75-81.

Trauer, James M., Ragonnet, Romain, and McBryde, Emma S. (2018) Appropriate comparisons of tuberculosis latency structures with empiric data. Lancet Infectious Diseases, 18 (7). pp. 720-721.

Alene, Kefyalew Addis, Viney, Kerri, Yi, Hengzhong, McBryde, Emma S., Yang, Kunyun, Bai, Liqiong, Gray, Darren J., Xu, Zuhui, and Clements, Archie C.A. (2018) Comparison of the validity of smear and culture conversion as a prognostic marker of treatment outcome in patients with multidrug-resistant tuberculosis. PLoS ONE, 13 (5). e0197880.

Meehan, Michael T., Cocks, Daniel G., Trauer, James M., and McBryde, Emma S. (2018) Coupled, multi-strain epidemic models of mutating pathogens. Mathematical Biosciences, 296. pp. 82-92.

Foster, J'Belle, McBryde, E., Taune, M., and Peniyamina, D. (2018) Cross-border tuberculosis: opportunities, challenges and change. International Journal of Tuberculosis and Lung Disease, 22 (9). pp. 1107-1108.

Van Gemert, Caroline, McBryde, Emma S., Bergeri, Isabel, Sacks-davis, Rachel, Vally, Hassan, Spelman, Tim, Sutton, Brett, and Hellard, Margaret (2018) Description of social contacts among student cases of pandemic influenza during the containment phase, Melbourne, Australia, 2009. Western Pacific Surveillance and Response, 9 (Suppl 1). 3.

Horwood, Paul F., McBryde, Emma S., Peniyamina, Dunstan, and Ritchie, Scott A. (2018) The Indo-Papuan conduit: a biosecurity challenge for Northern Australia. Australian and New Zealand Journal of Public Health, 42 (5). pp. 434-436.

Cheah, Agnes Loo Yee, Cheng, Allen C., Spelman, Denis, Nation, Roger L., Kong, David C.M., and McBryde, Emma S. (2018) Mathematical modelling of vancomycin-resistant enterococci transmission during passive surveillance and active surveillance with contact isolation highlights the need to identify and address the source of acquisition. BMC Infectious Diseases, 18. 511.

Alene, Kefyalew Addis, Clements, Archie C.A., McBryde, Emma S., Jaramillo, Ernesto, Lonnroth, Knut, Shaweno, Debebe, Gulliver, Amelia, and Viney, Kerri (2018) Mental health disorders, social stressors, and health-related quality of life in patients with multidrug-resistant tuberculosis: a systematic review and meta-analysis. Journal of Infection, 77 (5). pp. 357-367.

Shaweno, Debebe, Karmakar, Malancha, Alene, Kefyalew Addis, Ragonnet, Romain, Clements, Archie C.A., Trauer, James M., Denholm, Justin T., and McBryde, Emma S. (2018) Methods used in the spatial analysis of tuberculosis epidemiology: a systematic review. BMC Medicine, 16. 193.

Doan, Tan N., Cao, Pengxing, Emeto, Theophilus I., Mccaw, James M., and McBryde, Emma S. (2018) Predicting the outcomes of new short-course regimens for multi-drug resistant tuberculosis using intrahost and pharmacokinetic-pharmacodynamic modelling. Antimicrobial Agents and Chemotherapy, 62 (12). e01487-18.

Melsew, Y.A., Doan, T.N., Gambhir, M., Cheng, A.C., McBryde, E., and Trauer, J.M. (2018) Risk factors for infectiousness of patients with tuberculosis: a systematic review and meta-analysis. Epidemiology and Infection, 146 (3). pp. 345-353.

Alene, Kefyalew Addis, Clements, Archie C.A., McBryde, Emma S., Jaramillo, Ernesto, Lonnroth, Knut, Shaweno, Debebe, and Viney, Kerri (2018) Sequelae of multidrug-resistant tuberculosis: protocol for a systematic review and meta-analysis. BMJ Open, 8 (2).

Diefenbach-Elstob, Tanya, Graves, Patricia, Dowi, Robert, Gula, Bisato, Plummer, David, McBryde, Emma, Pelowa, Daniel, Siba, Peter, Pomat, William, and Warner, Jeffrey (2018) The epidemiology of tuberculosis in the rural Balimo region of Papua New Guinea. Tropical Medicine and International Health, 23 (9). pp. 1022-1032.

Wu, Yue, Marsh, Julie A., McBryde, Emma S., and Snelling, Thomas L. (2018) The influence of incomplete case ascertainment on measures of vaccine efficacy. Vaccine, 36 (21). pp. 2946-2952.

Shaweno, Debebe, Trauer, James M., Denholm, Justin T., and McBryde, Emma S. (2018) The role of geospatial hotspots in the spatial spread of tuberculosis in rural Ethiopia: a mathematical model. Royal Society Open Science, 5 (9).

McBryde, Emma S., Meehan, Michael T., Doan, Tan N., Ragonnet, Romain, Marais, Ben J., Guernier, Vanina, and Trauer, James M. (2017) The risk of global epidemic replacement with drug-resistant Mycobacterium tuberculosis strains. International Journal of Infectious Diseases, 56. pp. 14-20.

Eisen, Damon P., Moore, Elizabeth M., Leder, Karin, Lockery, Jessica, McBryde, Emma S., Mcneil, John J., Pilcher, David, Wolfe, Rory, and Woods, Robin L. (2017) Aspirin to inhibit SEPSIS (ANTISEPSIS) randomised controlled trial protocol. BMJ Open, 7 (1). e013636. pp. 1-7.

Shaweno, D., Shaweno, T., Trauer, James, Denholm, Justin, and McBryde, Emma (2017) Heterogeneity of distribution of tuberculosis in Sheka Zone, Ethiopia: drivers and temporal trends. The International Journal of Tuberculosis and Lung Disease, 21 (1). pp. 79-85.

Ragonnet, Romain, Trauer, James M., Denholm, Justin T., Marais, Ben J., and McBryde, Emma S. (2017) High rates of multidrug-resistant and rifampicin-resistant tuberculosis among re-treatment cases: where do they come from? BMC Infectious Diseases, 17 (36). pp. 1-10.

Dimasuay, Kris Genelyn, Gong, Lan, Rosario, Fredrick, McBryde, Emma, Spelman, Tim, Glazier, Jocelyn, Rogerson, Stephen J., Beeson, James G., Jansson, Thomas, Devenish, Rodney J., and Boeuf, Philippe (2017) Impaired placental autophagy in placental malaria. PLoS ONE, 12 (11). e0187291.

Doan, Tan N., Eisen, Damon P., Rose, Morgan T., Slack, Andrew, Stearnes, Grace, and McBryde, Emma S. (2017) Interferon-gamma release assay for the diagnosis of latent tuberculosis infection: a latent-class analysis. PLoS One, 12 (11). e0188631.

Ragonnet, R. , Trauer, J.M. , McBryde, E.S., Houben, R.M.G.J., Denholm, J.T., Handel, A., and Sumner, T. (2017) Is IPT more effective in high-burden settings? Modelling the effect of tuberculosis incidence on IPT impact. The International Journal of Tuberculosis and Lung Disease, 21 (1). pp. 60-66.

Wilkinson, Anna L., El-Hayek, Carol, Fairley, Christopher K., Roth, Norm, Tee, B.K., McBryde, Emma, Hellard, Margaret, and Stoové, Mark (2017) Measuring transitions in sexual risks among men who have sex with men: the novel use of latent class and latent transition analysis in HIV sentinel surveillance. American Journal of Epidemiology, 185 (8). pp. 627-635.

Trauer, James McCracken, Ragonnet, Romain, Doan, Tan Nhut, and McBryde, Emma Sue (2017) Modular programming for tuberculosis control, the "AuTuMN" platform. BMC Infectious Diseases, 17. 546.

Clifford, Vanessa, Tebruegge, Marc, Zufferey, Christel, Germano, Susie, Forbes, Ben, Cosentino, Lucy, McBryde, Emma, Eisen, Damon, Robins-Browne, Roy, Street, Alan, Denholm, Justin, and Curtis, Nigel (2017) Mycobacteria-specific cytokine responses as correlates of treatment response in active and latent tuberculosis. Journal of Infection, 75. 132 - 145.

Ragonnet, Romain, Trauer, James M., Scott, Nick, Meehan, Michael T., and McBryde, Emma S. (2017) Optimally capturing latency dynamics in models of tuberculosis transmission. Epidemics, 21. pp. 39-47.

Trauer, James, Muhi, Stephen, McBryde, Emma S., Al Harbi, Shmeylan A., Arabi, Yaseen M., Boyle, Andrew J., Cartin-Ceba, Rodrigo, Chen, Wei, Chen, Yung-Tai, Falcone, Marco, Gajic, Ognjen, Godsell, Jack, Gong, Michelle Ng, Kor, Daryl, Lösche, Wolfgang, McAuley, Daniel F., O'Neal, Hollis R., Ostholff, Michael, Otto, Gordon P., Sossdorf, Maik, Tsai, Min-Juei, Valerio-Rojas, Juan C., van der Poll, Tom, Violi, Francesco, Ware, Lorraine, Widmer, Andreas F., Wiewel, Maryse A., Winning, Johannes, and Wisen, Damon P. (2017) Quantifying the effects of prior acetyl-salicylic acid on sepsis-related deaths: an individual patient data meta-analysis using propensity matching. Critical Care Medicine, 45 (11). pp. 1871-1879.

Denholm, Justin T., McBryde, Emma S., Eisen, Damon, Street, Alan, Matchett, Elizabeth, Chen, Caroline, Shultz, Thomas, Biggs, Beverly, and Leder, Karin (2017) SIRCLE: a randomised controlled cost comparison of self-administered short-course isoniazid and rifapentine for cost-effective latent tuberculosis eradication. Internal Medicine Journal, 47 (12). pp. 1433-1436.

Alene , Kefyalew Addis , Viney , Kerri , McBryde, Emma S., and Clements, Archie C.A. (2017) Spatial patterns of multidrug resistant tuberculosis and relationships to socio-economic, demographic and household factors in northwest Ethiopia. PLoS ONE, 12 (2). e0171800. pp. 1-14.

Alene, Kefyalew Addis, Viney, Kerri, McBryde, Emma S., Tsegaye, Adino Tesfahun , and Clements, Archie C.A. (2017) Treatment outcomes in patients with multidrug‐resistant tuberculosis in north‐west Ethiopia. Tropical Medicine and International Health , 22 (3). pp. 351-362.

Alene, Kefyalew Addis, Yi, Hengzhong, Viney, Kerri, McBryde, Emma S., Yang, Kunyun, Bai, Liqiong, Gray, Darren J., Clements, Archie C.A., and Xu, Zuhui (2017) Treatment outcomes of patients with multidrug-resistant and extensively drug resistant tuberculosis in Hunan Province, China. BMC Infectious Diseases, 17. 573.

Horwood, Paul F., Soli, Kevin W., Maure, Tobias, Naito, Yuichi I., Morita, Ayako, Natsuhara, Kazumi, Tadokoro, Kiyoshi, Baba, Jun, Odani, Shingo, Tomitsuka, Eriko, Igai, Katsura, Larkins, Jo-Ann, Siba, Peter M., Pomat, William, McBryde, Emma S., Umezaki, Masahiro, and Greenhill, Andrew R. (2017) A high burden of asymptomatic gastrointestinal infections in traditional communities in Papua New Guinea. American Journal of Tropical Medicine and Hygiene, 97 (6). pp. 1872-1875.

Shaweno, Debebe, Trauer, James M., Denholm, Justin T., and McBryde, Emma S. (2017) A novel Bayesian geospatial method for estimating tuberculosis incidence reveals many missed TB cases in Ethiopia. BMC Infectious Diseases, 17. 662.

Ragonnet, Romain, Trauer, James M., Denholm, Justin T., Marais, Ben J., and McBryde, Emma S. (2017) A user-friendly mathematical modelling web interface to assist local decision making in the fight against drug-resistant tuberculosis. BMC Infectious Diseases, 17. 374.

Moss, Robert, Hickson, Roslyn I., McVernon, Jodie, McCaw, James M., Hort, Krishna, Black, Jim, Madden, John R., Tran, Nhi H., McBryde, Emma S., and Geard, Nicholas (2016) Model-informed risk assessment and decision making for an emerging infectious disease in the Asia-Pacific region. PLoS Neglected Tropical Diseases, 10 (9). e0005018. pp. 1-25.

Wilkinson, Anna L., El-Hayek, Carol, Spelman, Tim, Fairley, Christopher K., Leslie, David, McBryde, Emma S., Hellard, Margaret, and Stoove, Mark (2016) A 'test and treat' prevention strategy in Australia requires innovative HIV testing models: a cohort study of repeat testing among 'high-risk' men who have sex with men. Sexually Transmitted Infections, 92 (6). pp. 464-466.

Stone, Jack, Martin, Natasha K., Hickman, Matthew, Hellard, Margaret, Scott, Nick, McBryde, Emma, Drummer, Heidi, and Vickerman, Peter (2016) The potential impact of a hepatitis C vaccine for people who inject drugs: is a vaccine needed in the age of direct-acting antivirals? PLoS ONE, 11 (5). e0156213. pp. 1-19.

Trauer, James M., Denholm, Justin, Waseem, Saba, Ragonnet, Romain, and McBryde, Emma (2016) Scenario analysis for programmatic tuberculosis control in Western Province, Papua New Guinea. American Journal of Epidemiology, 183 (12). pp. 1138-1148.

Scott, Nick, Hellard, Margaret, and McBryde, Emma Sue (2016) Modeling hepatitis C virus transmission among people who inject drugs: assumptions, limitations and future challenges. Virulence, 7 (2). pp. 201-208.

Doan, Tan N., Kong, David C.M., Marshall, Caroline, Kirkpatrick, Carl M.J., and McBryde, Emma S. (2016) Modeling the impact of interventions against Acinetobacter baumannii transmission in intensive care units. Virulence, 7 (2). pp. 141-152.

Trauer, James M., Achar, Jay, Parpieva, Nargiza, Khamraev, Atadjan, Denholm, Justin T., Falzon, Dennis, Jaramillo, Ernesto, Mesic, Anita, du Cros, Philipp, and McBryde, Emma S. (2016) Modelling the effect of short-course multidrug-resistant tuberculosis treatment in Karakalpakstan, Uzbekistan. BMC Medicine, 14. 187. pp. 1-11.

Playford, E. Geoffrey, Lipman, Jeffrey, Jones, Michael, Lau, Anna F., Kabir, Masrura, Chen, Sharon C-A., Marriott, Deborah J., Seppelt, Ian, Gottlieb, Thomas, Cheung, Winston, Iredell, Jonathan R., McBryde, Emma S., and Sorrell, Tania C. (2016) Problematic dichotomisation of risk for ICU-acquired invasive candidiasis: results using a risk predictive model to categorise three levels of risk from a multicentre prospective cohort of Australian ICU patients. Clinical Infectious Diseases, 63 (11). ciw610. pp. 1463-1469.

Trauer, James M., Moyo, Nompilo, Tay, Ee-Laine, Dale, Katie, Ragonnet, Romain, McBryde, Emma, and Denholm, Justin T. (2016) Risk of active tuberculosis in the five years following infection...15%? Chest, 149 (2). pp. 516-525.

Scott, Nick, McBryde, Emma S., Thompson, Alexander, Doyle, Joseph S., and Hellard, Margaret E. (2016) Treatment scale-up to achieve global HCV incidence and mortality elimination targets: a cost-effectiveness model. Gut. pp. 1-9.

Scott, Nick, McBryde, Emma, Kirwan, Amy, and Stoove, Mark (2015) Modelling the impact of condom distribution on the incidence and prevalence of sexually transmitted infections in an adult male prison system. PLoS ONE, 10 (12). e0144869. pp. 1-14.

Clifford, Vanessa, Tebruegge, Marc, Zufferey, Christel, Germano, Susie, Denholm, Justin, Street, Alan, McBryde, Emma, Eisen, Damon, and Curtis, Nigel (2015) Serum IP-10 in the diagnosis of latent and active tuberculosis. Journal of Infection, 71 (6). pp. 696-698.

Geard, Nicholas, Glass, Kathryn, Mccaw, James M., McBryde, Emma S., Korb, Kevin B., Keeling, Matt J., and McVernon, Jodie (2015) The effects of demographic change on disease transmission and vaccine impact in a household structured population. Epidemics, 13. pp. 56-64.

Rolls, David A., Wang, Peng, McBryde, Emma, Pattison, Philippa, and Robins, Garry (2015) A simulation study comparing epidemic dynamics on exponential random graph and edge-triangle configuration type contact network models. PLoS ONE, 10 (11). e0142181. pp. 1-36.

Scott, Nick, McBryde, Emma, Vickerman, Peter, Martin, Natasha K., Stone, Jack, Drummer, Heidi, and Hellard, Margaret (2015) The role of a hepatitis C virus vaccine: modelling the benefits alongside direct-acting antiviral treatments. BMC Medicine, 13 (198). pp. 1-12.

Eisen, Damon P., and McBryde, Emma S. (2015) An association between aspirin use in human cases of infective endocarditis and reduced systemic embolism is shown in meta-analysis of observational studies. Journal of Infectious Diseases, 212 (4). pp. 673-674.

Wilkinson, Anna Lee, El-Hayek, Carol, Spelman, Tim, Fairley, Christopher, Leslie, David, McBryde, Emma, Hellard, Margaret, and Stoové, Mark (2015) "Seek, test, treat" lessons from Australia: a study of HIV testing patterns from a cohort of men who have sex with men. JAIDS, 69 (4). pp. 460-465.

Doan, Tan N., Kong, David. C.M., Marshall, Caroline, Kirkpatrick, Carl M.J., and McBryde, Emma S. (2015) Characterising the transmission dynamics of Acinetobacter baumannii in intensive care units using hidden Markov models. PLoS ONE, 10 (7). e0132037. pp. 1-15.

Lau, Anna F., Kabir, Masrura, Chen, Sharon C.-A., Playford, E. Geoffrey, Marriott, Deborah J., Jones, Michael, Lipman, Jeffrey, McBryde, Emma, Gottlieb, Thomas, Cheung, Winston, Seppelt, Ian, Iredell, Jonathan, and Sorrell, Tania C. (2015) Candida colonization as a risk marker for invasive candidiasis in mixed medical-surgical intensive care units: development and evaluation of a simple, standard protocol. Journal of Clinical Microbiology, 53 (4). pp. 1324-1330.

Harris, Patrick N.A., Peleg, Anton Y., Iredell, Jon, Ingram, Paul R., Miyakis, Spiros, Stewardson, Andrew J., Rogers, Benjamin A., McBryde, Emma S., Roberts, Jason A., Lipman, Jeff, Athan, Eugene, Paul, Sanjoy K., Baker, Peter, Harris-Brown, Tiffany, and Paterson, David L. (2015) Meropenem versus piperacillin-tazobactam for definitive treatment of bloodstream infections due to ceftriaxone non-susceptible Escherichia coli and Klebsiella spp (the MERINO trial): study protocol for a randomised controlled trial. Trials, 16 (24). pp. 1-8.

Sacks-Davis, Rachel, McBryde, Emma, Grebely, Jason, Hellard, Margaret, and Vickerman, Peter (2015) Many hepatitis C reinfections that spontaneously clear may be undetected: Markov-chain Monte Carlo analysis of observational study data. Journal of the Royal Society Interface, 12 (104). pp. 1-13.

Hellard, Margaret, McBryde, Emma, Sacks Davis, Rachel, Rolls, David A., Higgs, Peter, Aitken, Campbell, Thompson, Alex, Doyle, Joe, Pattison, Pip, and Robins, Garry (2015) Hepatitis C transmission and treatment as prevention: the role of the injecting network. International Journal of Drug Policy, 26 (10). pp. 958-962.

Meumann, Ella M., Mitchell, Brett G., McGregor, Alistair, McBryde, Emma, and Cooley, Louise (2015) Urinary Escherichia coli antimicrobial susceptibility profiles and their relationship with community antibiotic use in Tasmania, Australia. International Journal of Antimicrobial Agents, 46 (4). pp. 389-393.

Ragonnet, Romain, Trauer, James M., Denholm, Justin T., Geard, Nicholas L., Hellard, Margaret, and McBryde, Emma (2015) Vaccination programs for endemic infections: modelling real versus apparent impacts of vaccine and infection characteristics. Scientific Reports, 5. 15468. pp. 1-11.

Doan, Tan N., Kong, David C.M., Kirkpatrick, Carl M.J., and McBryde, Emma S. (2014) Optimizing hospital infection control: the role of mathematical modeling. Infection Control and Hospital Epidemiology, 35 (12). pp. 1521-1530.

Hellard, Margaret, Rolls, David A., Sacks-Davis, Rachel, Robins, Garry, Pattison, Philippa, Higgs, Peter, Aitken, Campbell, and McBryde, Emma (2014) The impact of injecting networks on hepatitis C transmission and treatment in people who inject drugs. Hepatology, 60 (6). pp. 1861-1870.

Doyle, Joseph S., Degenhardt, Louisa, Pedrana, Alisa E., McBryde, Emma S., Guy, Rebecca J., Stoove, Mark A., Weaver, Emma R., Grulich, Andrew E., Lo, Ying-Ru, and Hellard, Margaret E. (2014) Effects of HIV antiretroviral therapy on sexual and injecting risk-taking behavior: a systematic review and meta-analysis. Clinical Infectious Diseases, 59 (10). pp. 1483-1494.

Denholm, Justin T., McBryde, Emma S., Eisen, Damon P., Penington, Jocelyn S., Chen, Caroline, and Street, Alan C. (2014) Adverse effects of isoniazid preventative therapy for latent tuberculosis infection: a prospective cohort study. Drug, Healthcare and Patient Safety, 2014 (6). pp. 145-149.

Trauer, James M., Denholm, Justin T., and McBryde, Emma S. (2014) Construction of a mathematical model for tuberculosis transmission in highly endemic regions of the Asia-Pacific. Journal of Theoretical Biology, 358. pp. 74-84.

Schulz, Thomas R., McBryde, Emma S., Leder, Karin, and Biggs, Beverley-Ann (2014) Using stool antigen to screen for Helicobacter pylori in immigrants and refugees from high prevalence countries is relatively cost effective in reducing the burden of gastric cancer and peptic ulceration. PLoS ONE, 9 (9). e108610. pp. 1-9.

Marshall, Caroline, and McBryde, Emma (2014) The role of Staphylococcus aureus carriage in the pathogenesis of bloodstream infection. BMC Research Notes, 7. 428. pp. 1-6.

Denholm, Justin T., and McBryde, Emma S. (2014) Can Australia eliminate TB? Modelling immigration strategies for reaching MDG targets in a low-transmission setting. Australian and New Zealand Journal of Public Health, 38 (1). pp. 78-82.

Hellard, Margaret, Doyle, Joseph S., Sacks-Davis, Rachel, Thompson, Alexander J., and McBryde, Emma (2014) Eradication of hepatitis C infection: the importance of targeting people who inject drugs. Hepatology, 59 (2). pp. 366-369.

Cross, Gail B., Coles, Katie, Nikpour, Mandana, Moore, Owen A., Denholm, Justin, McBryde, Emma, Eisen, Damon P., Warigi, Beverlyn, Carter, Robyn, Pandey, Sushil, Harino, Paul, Siba, Peter, Coulter, Christopher, Mueller, Ivo, Phuanukoonnon, Suparat, and Pellegrini, Marc (2014) TB incidence and characteristics in the remote gulf province of Papua New Guinea: a prospective study. BMC Infectious Diseases, 14 (93). pp. 1-10.

Eisen, Damon P., McBryde, Emma S., and Walduck, Anna (2013) Low-dose aspirin and ibuprofen's sterilizing effects on mycobacterium tuberculosis suggest safe new adjuvant therapies for tuberculosis. Journal of Infectious Diseases, 208 (11). pp. 1925-1927.

Rolls, David A., Sacks-Davis, Rachel, Jenkinson, Rebecca, McBryde, Emma, Pattison, Phillipa, Robins, Garry, and Hellard, Margaret (2013) Hepatitis C transmission and treatment in contact networks of people who inject drugs. PLoS ONE, 8 (11). e78286. pp. 1-15.

Rolls, David A., Wang, Peng, Jenkinson, Rebecca, Pattison, Phillipa E., Robins, Garry L., Sacks-Davis, Rachel, Daraganova, Galina, Hellard, Margaret, and McBryde, Emma (2013) Modelling a disease-relevant contact network of people who inject drugs. Social Networks, 35 (4). pp. 699-710.

Heng Sim, Benedict Lim, McBryde, Emma, Street, Alan C., and Marshall, Caroline (2013) Multiple site surveillance cultures as a predictor of methicillin-resistant Staphylococcus aureus infections. Infection Control and Hospital Epidemiology, 34 (8). pp. 818-824.

Marshall, Caroline, Richards, Michael, and McBryde, Emma (2013) Do active surveillance and contact precautions reduce MRSA acquisition? A prospective interrupted time series. PLoS ONE, 8 (3). e5811. pp. 1-9.

Fielding, James E., Bergeri, Isabel, Higgins, Nasra, Kelly, Heath A., Meagher, Julian, McBryde, Emma S., Moran, Rodney, Hellard, Margaret E., and Lester, Rosemary A. (2013) The spread of influenza A(H1N1)pdm09 in Victorian school children in 2009: implications for revised pandemic planning. PLoS ONE, 8 (2). e5726. pp. 1-7.

McBryde, Emma S., and Denholm, Justin T. (2012) Risk of active tuberculosis in immigrants: effects of age, region of origin and time since arrival in a low-exposure setting. Medical Journal of Australia, 197 (8). pp. 458-461.

Denholm, J.T., Leslie, D.E., Jenkins, G.A., Darby, J., Johnson, P.D.R., Graham, S.M., Brown, G.V., Sievers, A., Globan, M., Brown, L.K., and McBryde, E.S. (2012) Long-term follow-up of contacts exposed to multidrug-resistant tuberculosis in Victoria, Australia, 1995–2010. International Journal of Tuberculosis and Lung Disease, 16 (10). pp. 1320-1325.

Denholm, Justin T., McBryde, Emma S., and Brown, Graham V. (2012) Ethical evaluation of immigration screening policy for latent tuberculosis infection. Australian and New Zealand Journal of Public Health, 36 (4). pp. 325-328.

McBryde, Emma S. (2012) The MJA and Gawler: a case of self-censorship? Medical Journal of Australia, 196 (10). p. 628.

Rolls, D.A., Daraganova, G., Sacks-Davis, R., Hellard, M., Jenkinson, R., McBryde, E., Pattison, P.E., and Robins, G.L. (2012) Modelling hepatitis C transmission over a social network of injecting drug users. Journal of Theoretical Biology, 297. pp. 73-87.

Commons, Robert J., McBryde, Emma, Valcanis, Mary, Powling, Joan, Street, Alan, and Hogg, Geoff (2012) Twenty-six years of enteric fever in Australia: an epidemiological analysis of antibiotic resistance. Medical Journal of Australia, 196 (5). pp. 332-336.

Eisen, Damon P., Reid, David, and McBryde, Emma S. (2012) Acetyl salicylic acid usage and mortality in critically ill patients with the systemic inflammatory response syndrome and sepsis. Critical Care Medicine, 40 (6). pp. 1761-1767.

McBryde, Emma (2012) Evaluation of risks of tuberculosis in Western Province Papua New Guinea. Report. Burnet Institute, Melbourne, VIC, Australia.

Street, Alan, McBryde, Emma, Denholm, Justin, and Eisen, Damon (2012) Management of Tuberculosis: a handbook for clinicians. Victorian Infectious Diseases Service, Melbourne, VIC, Australia.

Teh, Benjamin W., Street, Alan C., McBryde, Emma S., and Denholm, Justin T. (2012) Miliary tuberculosis following negative latent tuberculosis infection screening prior to tumor necrosis factor-α antagonists: implications for management? Journal of Rheumatology, 39 (6). pp. 1297-1298.

van Gemert, Caroline, Hellard, Margaret, McBryde, Emma S., Fielding, James, Spelman, Tim, Higgins, Nasra, Lester, Rosemary, Vally, Hassan, and Bergeri, Isabel (2011) Intrahousehold transmission of pandemic (H1N1) 2009 virus, Victoria, Australia. Emerging Infectious Diseases, 17 (9). pp. 1599-1607.

Eisen, Damon P., Marshall, Caroline, Dean, Melinda M., Sasadeusz, Joe, Richards, Michael, Buising, Kirsty, Cheng, Allen, Johnson, Paul D.R., Barr, Ian G., and McBryde, Emma S. (2011) No association between mannose-binding lectin deficiency and H1N1 2009 infection observed during the first season of this novel pandemic influenza virus. Human Immunology, 72 (11). pp. 1091-1094.

Denholm, Justin T., and McBryde, Emma S. (2011) TIRAP polymorphisms and TB susceptibility. Tuberculosis, 91. p. 342.

Marshall, Caroline, Kelso, Anne, McBryde, Emma, Barr, Ian G., Eisen, Damon P., Sasadeusz, Joe, Buising, Kirsty, Cheng, Allen C., Johnson, Paul, and Richards, Michael (2011) Pandemic (H1N1) 2009 risk for frontline health care workers. Emerging Infectious Diseases, 17 (6). pp. 1000-1006.

Glass, K., Mercer, G.N., Nishiura, H., McBryde, E.S., and Becker, N.G. (2011) Estimating reproduction numbers for adults and children from case data. Journal of the Royal Society Interface, 8. pp. 1248-1259.

Denholm, Justin T., and McBryde, Emma S. (2011) P2X7 A1513 polymorphisms and tuberculosis susceptibility. Respirology, 17. pp. 191-192.

Schulz, Thomas R., Street, Alan C., and McBryde, Emma S. (2010) The limitations of polymerase chain reaction in the setting of possible recurrent tuberculosis: 2 instructional cases. Diagnostic Microbiology and Infectious Disease, 68 (3). pp. 293-296.

Ananda-Rajah, Michelle R., McBryde, Emma S., Buising, Kirsty L., Redl, Leanne, MacIsaac, Christopher, Cade, John F., and Marshall, Caroline (2010) The role of general quality improvement measures in decreasing the burden of endemic MRSA in a medical–surgical intensive care unit. Intensive Care Medicine, 36 (11). pp. 1890-1898.

Denholm, Justin T., and McBryde, Emma S. (2010) The use of anti-tuberculosis therapy for latent TB infection. Infection and Drug Resistance, 2010 (3). pp. 63-72.

Van Kerkhove, Maria D., Asikainen, Tommi, Becker, Niels G., Bjorge, Steven, Desenclos, Jean-Claude, dos Santos, Thais, Fraser, Christophe, Leung, Gabriel M., Lipsitch, Marc, Longini, Ira M., McBryde, Emma S., Roth, Cathy E., Shay, David K., Smith, Derek J., Wallinga, Jacco, White, Peter J., Ferguson, Neil M., and Riley, Steven (2010) Studies needed to address public health challenges of the 2009 H1N1 influenza pandemic: insights from modeling. PLoS Medicine, 7 (6). e1000275. pp. 1-6.

Mathews, John D., McBryde, Emma S., McVernon, Jodie, Pallaghy, Paul K., and McCaw, James (2010) Prior immunity helps to explain wave-like behaviour of pandemic influenza in 1918-9. BMC Infectious Diseases, 10 (128). pp. 1-9.

Denholm, Justin T., and McBryde, Emma S. (2010) Management of latent tuberculosis infections in Australia and New Zealand: a review of current practice. Tuberculosis Research and Treatment, 2010. 284028. pp. 1-5.

Denholm, J.T., McBryde, E.S., and Eisen, D.P. (2010) Mannose-binding lectin and susceptibility to tuberculosis: a meta-analysis. Clinical and Experimental Immunology, 162 (1). pp. 84-90.

Playford, Elliott Geoffrey, Lipman, Jeff, Kabir, Masrura, McBryde, Emma S., Nimmo, Graeme R., Lau, Anna, and Sorrell, Tania C. (2009) Assessment of clinical risk predictive rules for invasive candidiasis in a prospective multicentre cohort of ICU patients. Intensive Care Medicine, 35 (12). pp. 2141-2145.

Eisen, Damon P., and McBryde, Emma S. (2009) Avoiding Guillan‐Barré syndrome following swine origin pandemic H1N1 2009 influenza vaccination. Journal of Infectious Diseases, 200 (10). pp. 1627-1628.

McBryde, Emma S., Brett, Judy, Russo, Philip L., Worth, Leon J., Bull, Ann L., and Richards, Michael J. (2009) Validation of statewide surveillance system data on central line–associated bloodstream infection in intensive care units in Australia. Infection Control and Hospital Epidemiology, 30 (11). pp. 1045-1049.

McBryde, E.S., Bergeri, I., van Gemert, C., Rotty, J., Headley, E.J., Simpson, K., Lester, R.A., Hellard, Margaret, and Fielding, J.E. (2009) Early transmission characteristics of influenza A(H1N1)v in Australia: Victorian state, 16 May – 3 June 2009. Eurosurveillance, 14 (42). 19363. pp. 1-6.

Cheng, Allen C., McBryde, Emma S., Wuthiekanun, Vanaporn, Chierakul, Wirongrong, Amornchai, Premjit, Day, Nicholas P.J., White, Nicholas J., and Peacock, Sharon J. (2009) Dosing regimens of cotrimoxazole (trimethoprim-sulfamethoxazole) for melioidosis. Antimicrobial Agents and Chemotherapy, 53 (10). pp. 4193-4199.

Worth, Leon J., Brett, Judy, Bull, Ann L., McBryde, Emma S., Russo, Philip L., and Richards, Michael J. (2009) Impact of revising the National Nosocomial Infection Surveillance System definition for catheter-related bloodstream infection in ICU: reproducibility of the National Healthcare Safety Network case definition in an Australian cohort of infection control professionals. American Journal of Infection Control, 37 (8). pp. 643-648.

McCaw, James M., McVernon, Jodie, McBryde, Emma, and Mathews, John D. (2009) Influenza: accounting for prior immunity. Science, 325. p. 1071.

McCaw, James M., Wood, James G., McBryde, Emma S., Nolan, Terry M., Wu, Joseph T., Lipsitch, Marc, and McVernon, Jodie (2009) Understanding Australia's influenza pandemic policy on the strategic use of the antiviral drug stockpile. Medical Journal of Australia, 191 (3). pp. 136-137.

Eisen, Damon P., Corey, G. Ralph, McBryde, Emma S., Fowler, Vance G., Miro, Jose M., Cabell, Chris H., Street, Alan C., Paiva, Marcelo Goulart, Ionac, Adina, Tan, Ru-San, Tribouilloy, Christophe, Pachirat, Orathai, Jones, Sandra Braun, Chipigina, Natalia, Naber, Christoph, Pan, Angelo, Ravasio, Veronica, Gattringer, Rainer, Chu, Vivian H., and Bayer, Arnold S. (2009) Reduced valve replacement surgery and complication rate in Staphylococcus aureus endocarditis patients receiving acetyl-salicylic acid. Journal of Infection, 58 (5). pp. 332-338.

McBryde, Emma S. (2009) Network structure can play a role in vaccination thresholds and herd immunity: a simulation using a network mathematical model. Clinical Infectious Diseases, 48 (5). pp. 685-686.

Marshall, Caroline, Spelman, Denis, Harrington, Glenys, and McBryde, Emma (2009) Daily hazard of acquisition of methicillin‐resistant Staphylococcus aureus infection in the intensive care unit. Infection Control and Hospital Epidemiology, 30 (2). pp. 125-129.

Eisen, Damon P., and McBryde, Emma S. (2008) Reply to Smithson et al. Clinical Infectious Diseases, 47 (11). p. 1493.

Eisen, Damon P., Dean, Melinda M., Boermeester, Marja A., Fidler, Katy J., Gordon, Anthony C., Kronborg, Gitte, Kun, Jürgen F.J., Lau, Yu Lung, Payeras, Antonis, Valdimarsson, Helgi, Brett, Stephen J., Mila, Joan, Ip, W.K. Eddie, Peters, Mark J., Saevarsdottir, Saedis, van Till, J.W. Oliver, Hinds, Charles J., and McBryde, Emma S. (2008) Low serum mannose‐binding lectin level increases the risk of death due to pneumococcal infection. Clinical Infectious Diseases, 47 (4). pp. 510-516.

Kelly, H., Bull, A., Russo, P., and McBryde, E.S. (2008) Estimating sensitivity and specificity from positive predictive value, negative predictive value and prevalence: application to surveillance systems for hospital-acquired infections. Journal of Hospital Infection, 69 (2). pp. 164-168.

McBryde, Emma S., Kelly, Heath, Marshall, Caroline, Russo, Philip L., McElwain, D.L. Sean, and Pettitt, Anthony N. (2008) Using samples to estimate the sensitivity and specificity of a surveillance process. Infection Control and Hospital Epidemiology, 29 (6). pp. 559-563.

Mathews, John D., McCaw, Christopher T., McVernon, Jodie, McBryde, Emma, and McCaw, James M. (2007) A biological model for influenza transmission: pandemic planning implications of asymptomatic infection and immunity. PLoS ONE, 2 (11). e1220. pp. 1-6.

Friedman, N. Deborah, Bull, Ann L., Russo, Philip L., Leder, Karin, Reid, Christopher, Billah, Baki, Marasco, Silvana, McBryde, Emma, and Richards, Michael J. (2007) An alternative scoring system to predict risk for surgical site infection complicating coronary artery bypass graft surgery. Infection Control and Hospital Epidemiology, 28 (10). pp. 1162-1168.

McBryde, E.S., Pettitt, A.N., Cooper, B.S., and McElwain, D.L.S. (2007) Characterizing an outbreak of vancomycin-resistant enterococci using hidden Markov models. Journal of the Royal Society Interface, 4 (15). pp. 745-754.

Bennett, Noleen J., Bull, Ann L., Dunt, David R., McBryde, Emma, Russo, Philip L., Spelman, Denis W., and Richards, Michael J. (2007) Bloodstream infection surveillance in smaller hospitals. Australian Infection Control, 12 (2). pp. 45-47.

McBryde, E.S., Pettitt, A.N., and McElwain, D.L.S. (2007) A stochastic mathematical model of methicillin resistant Staphylococcus aureus transmission in an intensive care unit: predicting the impact of interventions. Journal of Theoretical Biology, 245 (3). pp. 470-481.

Eisen, Damon P., Cheng, Allen C., and McBryde, Emma S. (2007) Letters to the editor. Surgical Infections, 8 (1). pp. 121-122.

McBryde, Emma S., and McElwain, Donald L.S. (2006) A mathematical model investigating the impact of an environmental reservoir on the prevalence and control of vancomycin‐resistant enterococci. Journal of Infectious Diseases, 193 (10). pp. 1473-1474.

McBryde, E.S., Gibson, G., Pettitt, A.N., Zhang, Y., Zhao, B., and McElwain, D.L.S. (2006) Bayesian modelling of an epidemic of severe acute respiratory syndrome. Bulletin of Mathematical Biology, 68 (4). pp. 889-917.

McBryde, Emma (2006) Mathematical and statistical modelling of infectious diseases in hospitals. PhD thesis, Queensland University of Technology.

McBryde, E.S., Tilse, M., and McCormack, J. (2005) Comparison of contamination rates of catheter-drawn and peripheral blood cultures. Journal of Hospital Infection, 60 (2). pp. 118-121.

McBryde, E.S., Bradley, L.C., Whitby, M., and McElwain, D.L.S. (2004) An investigation of contact transmission of methicillin-resistant Staphylococcus aureus. Journal of Hospital Infection, 58 (2). pp. 104-108.

Kennedy, Glen A., Curnow, Jennifer L., Gooch, Julie, Williams, Bronwyn, Wood, Peter, Pitman, Catherine, McBryde, Emma, and Woods, Marion (2002) Histoplasma capsulatum in peripheral blood smears. British Journal of Haematology, 116 (3). p. 503.