A

Antoun, Elie, Migliavacca, Eugenia, Garratt, Emma S., Barton, Sheila J., Titcombe, Phil, Westbury, Leo D., Baczynska, Alica, Dodds, Richards, Roberts, Helen C., Sayer, Avan A., Shaw, Sarah, Syddall, H.E., Sheppard, Allan, McFarlane, Craig, Karnani, Neerja, Forrester, Terrence, Cooper, Cyrus, Feige, Jerome N., Patel, Harnish P., Godfrey, Keith M., Lillycrop, Karen A., and EpiGen Global Research Consortium, (2021) Altered H19/miR‐675 expression in skeletal muscle is associated with low muscle mass in community‐dwelling older adults. JCSM Rapid Communications, 4 (2). pp. 207-221.

Adegboye, Oyelola, Field, Matt A., Kupz, Andreas, Pai, Saparna, Sharma, Dileep, Smout, Michael J., Wangchuk, Phurpa, Wong, Yide, and Loiseau, Claire (2021) Natural-product-based solutions for tropical infectious diseases. Clinical Microbiology Reviews, 34 (4). e00348-20.

Aghajani, Marra Jai, Yang, Tao, Schmitz, Ulf, James, Alexander, McCafferty, Charles Eugenio, de Souza, Paul, Niles, Navin, and Roberts, Tara L. (2020) Epithelial-to-mesenchymal transition and its association with PD-L1 and CD8 in thyroid cancer. Endocrine Connections, 9. pp. 1028-1041.

Amirkhah, Raheleh, Naderi-Meshkin, Hojjat, Shah, Jaynish S., Dunne, Philip D., and Schmitz, Ulf (2019) The intricate interplay between epigenetic events, alternative splicing and noncoding RNA deregulation in colorectal cancer. Cells, 8 (8). 929.

Amirkhah, Raheleh, Farazmand, Ali, Wolkenhauer, Olaf, and Schmitz, Ulf (2016) RNA systems biology for cancer: From diagnosis to therapy. In: Scmitz, U., and Wolkenhauer, O., (eds.) Systems Medicine. Methods in Molecular Biology, 1386 . Springer, New York, NY, USA, pp. 305-330.

B

Biros, Erik, Reznik, Jacqueline E., and Moran, Corey S. (2022) Role of inflammatory cytokines in genesis and treatment of atherosclerosis. Trends in Cardiovascular Medicine, 32 (3). pp. 138-142.

Bailey, Charles G., Gupta, Shailendra, Metierre, Cynthia, Amarasekera, Punkaja M.S., O'Young, Patrick, Kyaw, Wunna, Laletin, Tatyana, Francis, Habib, Semaan, Crystal, Sharifi Tabar, Mehdi, Singh, Krishna P., Mullighan, Charles G., Wolkenhauer, Olaf, Schmitz, Ulf, and Rasko, John (2021) Structure–function relationships explain CTCF zinc finger mutation phenotypes in cancer. Cellular and Molecular Life Sciences, 78. pp. 7519-7536.

Buitrago, Geraldine (2020) The anti-colitic properties of hookworm protein Na-AIP-1. PhD thesis, James Cook University.

Bayman, Gareth S., Groft, Stephen, van der Westhuizen, Francois H., Gassman, Safiyya D., du Plessis, Kelly, Coles, Emily P., Selebatso, Eda, Selebatso, Moses, Gaobinelwe, Boikobo, Selebatso, Tebogo, Joel, Dipesalema, Llera, Virginia A., Vorster, Barend C., Wuebbels, Barbara, Djoudalbaye, Benjamin, Austin, Christopher P., Kumuthini, Judit, Forman, John, Kaufmann, Petra, Chipeta, James, Gavhed, Désirée, Larsson, Annika, Stojiljkovic, Maja, Nordgren, Ann, Roldan, Emilio J.A., Taruscio, Domenica, Wong-Rieger, Durhane, Nowak, Kristen, Bilkey, Gemma A., Easteal, Simon, Bowdin, Sarah, Reichardt, Juergen K.V., Beltran, Sergi, Kosaki, Kenjiro, van Karnebeek, Clara D.M., Gong, Mengchun, Shuyang, Zhang, Mehrian-Shai, Ruty, Adams, David R., Puri, Ratna D., Zhang, Feng, Pachter, Nicholas, Muenke, Maximilian, Nellaker, Christoffer, Gahl, William A., Cederroth, Helene, Broley, Stephanie, Schoonen, Maryke, Boycott, Kym M., and Posada, Manuel (2020) A call for global action for rare diseases in Africa. Nature Genetics, 52. pp. 21-26.

Brown, Peter, RELISH Consortium, , and Zhou, Yaoqi (2019) Large expert-curated database for benchmarking document similarity detection in biomedical literature search. Database: the journal of biological databases and curation, 2019. baz085.

C

Cobos, Claudia, Bansal, Paramjit S., Wilson, David T., Jones, Linda, Zhao, Guangzu, Field, Matthew A., Eichenberger, Ramon M., Pickering, Darren A., Ryan, Rachael Y.M., Ratnatunga, Champa N., Miles, John J., Ruscher, Roland, Giacomin, Paul R., Navarro, Severine, Loukas, Alex, and Daly, Norelle L. (2022) Peptides derived from hookworm anti-inflammatory proteins suppress inducible colitis in mice and inflammatory cytokine production by human cells. Frontiers in Medicine, 9. 934852.

Chaiyadet, Sujittra, Sotillo, Javier, Krueajampa, Watchara, Thongsen, Sophita, Smout, Michael, Brindley, Paul J., Laha, Thewarach, and Loukas, Alex (2022) Silencing of Opisthorchis viverrini Tetraspanin Gene Expression Results in Reduced Secretion of Extracellular Vesicles. Frontiers in Cellular and Infection Microbiology, 12. 827521.

Cobos Caceres, Claudia (2018) Development of peptides as potential drug leads for the treatment of inflammatory bowel diseases. PhD thesis, James Cook University.

D

Dorney, Ryley, Dhungel, Bijay P., Rasko, John E.J., Hebbard, Lionel, and Schmitz, Ulf (2022) Recent Advances in Cancer Fusion Transcript Detection. Briefings in Bioinformatics. (In Press)

Dewdney, Brittany (2021) Characterising the role of fructose metabolism in hepatocellular carcinoma. PhD thesis, James Cook University.

Deacy, Anthony M., Gan, Samuel Ken-En, and Derrick, Jeremy P. (2021) Superantigen recognition and interactions: functions, mechanisms and applications. Frontiers in Immunology, 12. 731845. pp. 3765-6781.

Dhungel, Bijay P., Monteuuis, Geoffray, Giardina, Caroline, Tabar, Mehdi S., Feng, Yue, Metierre, Cynthia, Ho, Sarah, Nagarajah, Rajini, Fontaine, Angela R.M., Shah, Jaynish S., Gokal, Divya, Bailey, Charles G., Schmitz, Ulf, and Rasko, John E.J. (2021) The fusion of CLEC12A and MIR223HG arises from a trans‐splicing event in normal and transformed human cells. International Journal of Molecular Sciences, 22. 12178.

D’Angelo, Carla S., Hermes, Azure, McMaster, Christopher M., Prichep, Elissa, Richer, Étienne, van der Westhuizen, Francois H., Repetto, Gabriela M., Mengchun, Gong, Malherbe, Helen, Reichardt, Juergen K.V., Arbour, Laura, Hudson, Maui, du Plessis, Kelly, Haendel, Melissa, Wilcox, Phillip, Lynch, Sally Ann, Rind, Shamir, Easteal, Simon, Estivill, Xavier, Thomas, Yarlalu, and Baynam, Gareth (2020) Barriers and considerations for diagnosing rare diseases in Indigenous populations. Frontiers in Pediatrics, 8. 579924.

E

Emran, Abdullah Al, Nsengimana, Jérémie, Punnia-Moorthy, Gaya, Schmitz, Ulf, Gallagher, Stuart J., Newton-Bishop, Julia, Tiffen, Jessamy C., and Hersey, Peter (2020) Study of the female sex survival advantage in melanoma—a focus on x-linked epigenetic regulators and immune responses in two cohorts. Cancers, 12. 2082.

F

Flores-Valdez, Mario Alberto, Kupz, Andreas, and Subbian, Selvakumar (2022) Recent Developments in Mycobacteria-Based Live Attenuated Vaccine Candidates for Tuberculosis. Biomedicines, 10 (11). 2749.

Fujii, Toshiyuki, Kato, Chizu, Mahan, Brandon, and Moynier, Frédéric (2021) Study on the Isotope fractionation of Zinc in Complexation with Macrocyclic Polyethers. Zeitschrift fuer Anorganische und Allgemeine Chemie, 647 (6). pp. 599-605.

G

Gualtieri, Linda, Yong, Ronald, Ah-Kion, Jessley, Jamil, Amanda L.A., Bazaei, Asmae, Kotecha, Jhanvi, Long, Sharron, Silcock, Gloria, and Miller, Catherine M. (2022) Droplet Distribution in a University Dental Clinic Setting: The Importance of High-Volume Evacuation. Healthcare, 10 (9). 1799.

Grasby, Katrina, Jahanshad, Neda, Painter, Jodie N., Colodro-Conde, Lucía, Bralten, Janita, Hibar, Derrek P., Lind, Penelope A., Pizzagalli, Fabrizio, Ching, Christopher R. K., McMahon, Mary Agnes B., Shatokhina, Natalia, Zsembik, Leo C. P., Thomopoulos, Sophia I., Zhu, Alyssa H., Strike, Lachlan T., Agartz, Ingrid, Alhusaini, Saud, Almeida, Marcio A. A., Alnæs, Dag, Amlien, Inge K., Andersson, Micael, Ard, Tyler, Armstrong, Nicola J., Ashley-Koch, Allison, Atkins, Joshua R., Bernard, Manon, Brouwer, Rachel M., Buimer, Elizabeth E. L., Bülow, Robin, Bürger, Christian, Cannon, Dara M., Chakravarty, Mallar, Chen, Qiang, Cheung, Joshua W., Couvy-Duchesne, Baptiste, Dale, Anders M., Dalvie, Shareefa, de Araujo, Tânia K., de Zubicaray, Greig I., de Zwarte, Sonja M. C., den Braber, Anouk, Doan, Nhat Trung, Dohm, Katharina, Ehrlich, Stefan, Engelbrecht, Hannah-Ruth, Erk, Susanne, Fan, Chun Chieh, Fedko, Iryna O., Foley, Sonya F., Ford, Judith M., Fukunaga, Masaki, Garrett, Melanie E., Ge, Tian, Giddaluru, Sudheer, Goldman, Aaron L., Green, Melissa J., Groenewold, Nynke A., Grotegerd, Dominik, Gurholt, Tiril P., Gutman, Boris A., Hansell, Narelle K., Harris, Mathew A., Harrison, Marc B., Haswell, Courtney C., Hauser, Michael, Herms, Stefan, Heslenfeld, Dirk J., Ho, New Fei, Hoehn, David, Hoffmann, Per, Holleran, Laurena, Hoogman, Martine, Hottenga, Jouke-Jan, Ikeda, Masashi, Janowitz, Deborah, Jansen, Iris E., Jia, Tianye, Jockwitz, Christiane, Kanai, Ryota, Karama, Sherif, Kasperaviciute, Dalia, Kaufmann, Tobias, Kelly, Sinead, Kikuchi, Masataka, Klein, Marieke, Knapp, Michael, Knodt, Annchen R., Krämer, Bernd, Lam, Max, Lancaster, Thomas M., Lee, Phil H., Lett, Tristram A., Lewis, Lindsay B., Lopes-Cendes, Iscia, Luciano, Michelle, Macciardi, Fabio, Marquand, Andre F., Mathias, Samuel R., Melzer, Tracy R., Milaneschi, Yuri, Mirza-Schreiber, Nazanin, Moreira, Jose C. V., Mühleisen, Thomas W., Müller-Myhsok, Bertram, Najt, Pablo, Nakahara, Soichiro, Nho, Kwangsik, Olde Loohuis, Loes M., Orfanos, Dimitri Papadopoulos, Pearson, John F., Pitcher, Toni L., Pütz, Benno, Quidé, Yann, Ragothaman, Anjanibhargavi, Rashid, Faisal M., Reay, William R., Redlich, Ronny, Reinbold, Céline S., Repple, Jonathan, Richard, Geneviève, Riedel, Brandalyn C., Risacher, Shannon L., Rocha, Cristiane S., Mota, Nina Roth, Salminen, Lauren, Saremi, Arvin, Saykin, Andrew J., Schlag, Fenja, Schmaal, Lianne, Schofield, Peter R., Secolin, Rodrigo, Shapland, Chin Yang, Shen, Li, Shin, Jean, Shumskaya, Elena, Sønderby, Ida E., Sprooten, Emma, Tansey, Katherine E., Teumer, Alexander, Thalamuthu, Anbupalam, Tordesillas-Gutiérrez, Diana, Turner, Jessica A., Uhlmann, Anne, Vallerga, Costanza Ludovica, van der Meer, Dennis, van Donkelaar, Marjolein M. J., van Eijk, Liza, van Erp, Theo G. M., van Haren, Neeltje E. M., van Rooij, Daan, van Tol, Marie-José, Veldink, Jan H., Verhoef, Ellen, Walton, Esther, Wang, Mingyuan, Wang, Yunpeng, Wardlaw, Joanna M., Wen, Wei, Westlye, Lars T., Whelan, Christopher D., Witt, Stephanie H., Wittfeld, Katharina, Wolf, Christiane, Wolfers, Thomas, Wu, Jing Qin, Yasuda, Clarissa L., Zaremba, Dario, Zhang, Zuo, Zwiers, Marcel P., Artiges, Eric, Assareh, Amelia A., Ayesa-Arriola, Rosa, Belger, Aysenil, Brandt, Christine L., Brown, Gregory G., Cichon, Sven, Curran, Joanne E., Davies, Gareth E., Degenhardt, Franziska, Dennis, Michelle F., Dietsche, Bruno, Djurovic, Srdjan, Doherty, Colin P., Espiritu, Ryan, Garijo, Daniel, Gil, Yolanda, Gowland, Penny A., Green, Robert C., Häusler, Alexander N., Heindel, Walter, Ho, Beng-Choon, Hoffmann, Wolfgang U., Holsboer, Florian, Homuth, Georg, Hosten, Norbert, Jack, Clifford R., Jang, MiHyun, Jansen, Andreas, Kimbrel, Nathan A., Kolskår, Knut, Koops, Sanne, Krug, Axel, Lim, Kelvin O., Luykx, Jurjen J., Mathalon, Daniel H., Mather, Karen A., Mattay, Venkata S., Matthews, Sarah, Mayoral Van Son, Jaqueline, McEwen, Sarah C., Melle, Ingrid, Morris, Derek W., Mueller, Bryon A., Nauck, Matthias, Nordvik, Jan E., Nöthen, Markus M., O’Leary, Daniel S., Opel, Nils, Martinot, Marie-Laure Paillère, Pike, G. Bruce, Preda, Adrian, Quinlan, Erin B., Rasser, Paul E., Ratnakar, Varun, Reppermund, Simone, Steen, Vidar M., Tooney, Paul A., Torres, Fábio R., Veltman, Dick J., Voyvodic, James T., Whelan, Robert, White, Tonya, Yamamori, Hidenaga, Adams, Hieab H. H., Bis, Joshua C., Debette, Stephanie, Decarli, Charles, Fornage, Myriam, Gudnason, Vilmundur, Hofer, Edith, Ikram, M. Arfan, Launer, Lenore, Longstreth, W. T., Lopez, Oscar L., Mazoyer, Bernard, Mosley, Thomas H., Roshchupkin, Gennady V., Satizabal, Claudia L., Schmidt, Reinhold, Seshadri, Sudha, Yang, Qiong, Alvim, Marina K. M., Ames, David, Anderson, Tim J., Andreassen, Ole A., Arias-Vasquez, Alejandro, Bastin, Mark E., Baune, Bernhard T., Beckham, Jean C., Blangero, John, Boomsma, Dorret I., Brodaty, Henry, Brunner, Han G., Buckner, Randy L., Buitelaar, Jan K., Bustillo, Juan R., Cahn, Wiepke, Cairns, Murray J., Calhoun, Vince, Carr, Vaughan J., Caseras, Xavier, Caspers, Svenja, Cavalleri, Gianpiero L., Cendes, Fernando, Corvin, Aiden, Crespo-Facorro, Benedicto, Dalrymple-Alford, John C., Dannlowski, Udo, de Geus, Eco J. C., Deary, Ian J., Delanty, Norman, Depondt, Chantal, Desrivières, Sylvane, Donohoe, Gary, Espeseth, Thomas, Fernández, Guillén, Fisher, Simon E., Flor, Herta, Forstner, Andreas J., Francks, Clyde, Franke, Barbara, Glahn, David C., Gollub, Randy L., Grabe, Hans J., Gruber, Oliver, Håberg, Asta K., Hariri, Ahmad R., Hartman, Catharina A., Hashimoto, Ryota, Heinz, Andreas, Henskens, Frans A., Hillegers, Manon H. J., Hoekstra, Pieter J., Holmes, Avram J., Hong, L. Elliot, Hopkins, William D., Hulshoff Pol, Hilleke E., Jernigan, Terry L., Jönsson, Erik G., Kahn, René S., Kennedy, Martin A., Kircher, Tilo T. J., Kochunov, Peter, Kwok, John B. J., Le Hellard, Stephanie, Loughland, Carmel M., Martin, Nicholas G., Martinot, Jean-Luc, McDonald, Colm, McMahon, Katie L., Meyer-Lindenberg, Andreas, Michie, Patricia T., Morey, Rajendra A., Mowry, Bryan, Nyberg, Lars, Oosterlaan, Jaap, Ophoff, Roel A., Pantelis, Christos, Paus, Tomas, Pausova, Zdenka, Penninx, Brenda W. J. H., Polderman, Tinca J. C., Posthuma, Danielle, Rietschel, Marcella, Roffman, Joshua L., Rowland, Laura M., Sachdev, Perminder S., Sämann, Philipp G., Schall, Ulrich, Schumann, Gunter, Scott, Rodney J., Sim, Kang, Sisodiya, Sanjay M., Smoller, Jordan W., Sommer, Iris E., St Pourcain, Beate, Stein, Dan J., Toga, Arthur W., Trollor, Julian N., Van der Wee, Nic J. A., van ’t Ent, Dennis, Völzke, Henry, Walter, Henrik, Weber, Bernd, Weinberger, Daniel R., Wright, Margaret J., Zhou, Juan, Stein, Jason L., Thompson, Paul M., and Medland, Sarah E. (2020) The genetic architecture of the human cerebral cortex. Science, 367 (6484). eaay6690.

Gupta, Shailendra K., Jaitly, Tanushree, Schmitz, Ulf, Schuler, Gerold, Wolkenhauer, Olaf, and Vera, Julio (2016) Personalized cancer immunotherapy using Systems Medicine approaches. Briefings in Bioinformatics, 17 (3). pp. 453-467.

H

Herzig, Volker, Sunagar, Kartik, Wilson, David T.R., Pineda, Sandy S., Israel, Mathilde R., Dutertre, Sebastien, McFarland, Brianna Sollod, Undheim, Eivind A.B., Hodgson, Wayne C., Alewood, Paul F., Lewis, Richard J., Bosmans, Frank, Vetter, Irina, King, Glenn F., and Fry, Bryan G. (2020) Australian funnel-web spiders evolved human-lethal δ-hexatoxins for defense against vertebrate predators. Proceedings of the National Academy of Sciences of the United States of America, 117 (40). pp. 24920-24928.

Huynh, Pacific, Phie, James, Krishna, Smriti Murali, and Golledge, Jonathan (2020) Systematic review and meta-analysis of mouse models of diabetes-associated ulcers. BMJ Open Diabetes Research & Care, 8 (1). e000982.

J

Jamtsho, Tenzin, Ugyen, , and Wangchuk, Phurpa (2023) Datura stramonium (Thorn Apple or Devil’s Trumpet). In: Husen, Azamal, (ed.) Exploring Poisonous Plants: Medicinal Values, Toxicity Responses, and Therapeutic Uses. CRC Press, Boca Raton, Florida, USA, pp. 219-240.

Jensen, Sacha A., Atwa, Ondine, and Handford, Penny A. (2021) Assembly assay identifies a critical region of human fibrillin-1 required for 10 - 12 nm diameter microfibril biogenesis. PLoS ONE, 16 (3). e0248532.

K

Kabasser, Stefan, Pratap, Kunal, Kamath, Sandip, Taki, Aya, Dang, Thanh, Koplin, Jennifer, Perrett, Kirsten, Hummel, Karin, Radauer, Christian, Breiteneder, Heimo, Lopata, Andreas L., and Bublin, Merima (2022) Identification of vicilin, legumin and antimicrobial peptide 2a as macadamia nut allergens. Food Chemistry, 370. 131028.

Karimi, Mohammad Reza, Karimi, Amir Hossein, Abolmaali, Shamsozoha, Mehdi, Sadeghi, and Schmitz, Ulf (2022) Prospects and challenges of cancer systems medicine: from genes to disease networks. Briefings in Bioinformatics, 23 (1). bbab343.

Kong, Xiang-Zhen, ENIGMA Laterality Working Group, , and Franks, Clyde (2022) Reproducibility in the absence of selective reporting: an illustration from large‐scale brain asymmetry research. Human Brain Mapping, 43 (1). pp. 244-254.

Krishnan, Anirudh, Chilton, Emily, Raman, Jaishankar, Saxena, Pankaj, McFarlane, Craig, Trollope, Alexandra F., Kinobe, Robert, and Chilton, Lisa (2021) Are interactions between epicardial adipose tissue, cardiac fibroblasts and cardiac myocytes instrumental in atrial fibrosis and atrial fibrillation? Cells, 10 (9). 2501.

Kraeuter, Ann-Katrin, Phillips, Riana, and Sarnyai, Zoltan (2020) The gut microbiome in psychosis from mice to men: a systematic review of preclinical and clinical studies. Frontiers in Psychiatry, 11. 799.

Kong, Xiang-Zhen, Mathias, Samuel R., Guadalupe, Tulio, Laterality Working Group, ENIGMA, Glahn, David C., Franke, Barbara, Crivello, Fabrice, Tzourio-Mazoyer, Nathalie, Fisher, Simon E., Thompson, Paul M., and Francks, Clyde (2018) Mapping cortical brain asymmetry in 17,141 healthy individuals worldwide via the ENIGMA Consortium. Proceedings of the National Academy of Sciences of the United States of America, 115. E5154-E5163.

Khan, Faiz M., Marquardt, Stephan, Gupta, Shailendra K., Knoll, Susanne, Schmitz, Ulf, Spitschak, Alf, Engelmann, David, Vera, Julio, Wolkenhauer, Olaf, and Pützer, Brigitte M. (2017) Unraveling a tumor type-specific regulatory core underlying E2F1-mediated epithelial-mesenchymal transition to predict receptor protein signatures. Nature Communications, 8. 198.

L

Lelliott, Emily, Ramsbottom, Kelly, Dowling, Mark, Shembrey, Carolyn, Noori, Tahereh, Kearney, Conor, Michie, Jessica, Parish, Ian, Jordan, Margaret, Baxter, Alan, Young, Niel, Brennan, Amelia, and Oliaro, Jane (2022) NKG7 enhances CD8+ T cell synapse efficiency to limit inflammation. Frontiers in Immunology, 13. 931630.

Leow, Melvin Khee Shing, Dogra, Shaillay, Ge, Xiaojia, Chuah, Khoon Leong, Liew, Huiling, Loke, Kelvin Siu Hoong, and McFarlane, Craig (2021) Paraneoplastic secretion of multiple phosphatonins from a deep fibrous histiocytoma causing oncogenic osteomalacia. The Journal of Clinical Endocrinology & Metabolism, 106 (5). e2299-e2308.

Lai, Xin, Eberhardt, Martin, Schmitz, Ulf, and Vera, Julio (2019) Systems biology-based investigation of cooperating microRNAs as monotherapy or adjuvant therapy in cancer. Nucleic Acids Research, 47 (15). pp. 7753-7766.

Lai, Xin, Gupta, Shailendra K., Schmitz, Ulf, Marquardt, Stephan, Knoll, Susanne, Spitschak, Alf, Wolkenhauer, Olaf, Pützer, Brigitte M., and Vera, Julio (2018) MiR-205-5p and miR-342-3p cooperate in the repression of the E2F1 transcription factor in the context of anticancer chemotherapy resistance. Theranostics, 8 (4). pp. 1106-1120.

M

Moynier, Frédéric, Merland, Ariane, Rigoussen, Dimitri, Moureau, Julien, Paquet, Marine, Mahan, Brandon, and LeBorgne, Marie (2022) Baseline distribution of stable copper isotope compositions of the brain and other organs in mice. Metallomics, 14 (5). mfac017.

Moynier, Frédéric, Hu, Yan, Dai, Wei, Kubik, Edith, Mahan, Brandon, and Moureau, Julien (2021) Potassium isotopic composition of seven widely available biological standards using collision cell (CC)-MC-ICP-MS. Journal of Analytical Atomic Spectrometry, 36 (11). pp. 2444-2448.

Monteuuis, Geoffray, Schmitz, Ulf, Petrova, Veronika, Kearney, Padraic S., and Rasko, John E.J. (2020) Holding on to junk bonds: intron retention in cancer and therapy. Cancer Research, 81 (4). pp. 779-789.

Marshall, A.D., Bailey, C.G., Champ, K., Vellozzi, M., O'Young, P., Metierre, C., Feng, Y., Thoeng, A., Richards, A.M., Schmitz, U., Biro, M., Jayasinghe, R., Ding, L., Anderson, L., Mardis, E.R., and Rasko, J.E.J. (2017) CTCF genetic alterations in endometrial carcinoma are pro-tumorigenic. Oncogene, 36. pp. 4100-4110.

Masic, Anita, Valencia Hernandez, Ana Maria, Hazra, Sudipta, Glaser, Jan, Holzgrabe, Ulrike, Hazra, Banasri, and Schurigt, Uta (2015) Cinnamic Acid Bornyl Ester Derivatives from Valeriana wallichii Exhibit Antileishmanial In Vivo Activity in Leishmania major-Infected BALB/c Mice. PLoS ONE, 10 (11). e0142386.

N

Nisa, Annuurun, Kipper, Franciele C., Panigrahy, Dipak, Tiwari, Sangeeta, Kupz, Andreas, and Subbian, Selvakumar (2022) Different modalities of host cell death and their impact on Mycobacterium tuberculosis infection. American Journal of Physiology: cell physiology, 323 (5). C1444-C1474.

Nugraha, Ari Satia, Agustina, Riza Putri, Syafi, Mlrza, Rani, Dinar Mutia, Winarto, Naura Bathari, Triatmoko, Bawon, Pratama, Antonius Nugraha Widhi, Keller, Paul A., and Wangchuk, Phurpa (2022) Phytochemistry and Pharmacology of Medicinal Plants Used by the Tenggerese Society in Java Island of Indonesia. Molecules, 27 (21). 7532.

Novelli, Giuseppe, Biancolella, Michela, Mehrian-Shai, Ruty, Erickson, Caroline, Godri Pollitt, Krystal J., Vasiliou, Vasilis, Watt, Jessica, and Reichardt, Juergen K.V. (2020) COVID-19 update: the first 6 months of the pandemic. Human Genomics, 14. 48.

Naderi-Meshkin, Hojjat, Lai, Xin, Amirkhah, Raheleh, Vera, Julio, Rasko, John E.J., and Schmitz, Ulf (2019) Exosomal lncRNAs and cancer: Connecting the missing links. Bioinformatics, 35 (2). pp. 352-360.

P

Premarathna, Amal D., Tuvikene, Rando, Somasiri, M.N.R., De Silva, M.L.W.P., Adhikari, Ranjith, Ranahewa, T.H., Wijesundara, R.R.M.K.K., Wijesekera, S.K., Wangchuk, Phurpa, Rjabovs, Vitalijs, Jayasooriya, Anura P., and Rajapakse, R.P.V.J. (2023) A novel therapeutic effect of mannitol-rich extract from the brown seaweed Sargassum ilicifolium using in vitro and in vivo models. BMC Complementary Medicine and Therapies, 23. 26.

Pitaksakulrat, O., Sithithaworn, P., Kopolrat, K.Y., Kiatsopit, N., Saijuntha, W., Andrews, R.H., Petney, T.N., and Blair, D. (2022) Molecular identification of trematode parasites infecting the freshwater snail Bithynia siamensis goniomphalos in Thailand. Journal of Helminthology, 96. e49.

Phie, James, Thanigaimani, Shivshankar, and Golledge, Jonathan (2021) Systematic review and meta-analysis of interventions to slow progression of abdominal aortic aneurysm in mouse models. Arteriosclerosis, Thrombosis and Vascular Biology, 41 (4). pp. 1504-1517.

R

Rasalam, Roy, Rudofsky, Gottfried, Bodholdt, Ulrik, Catarig, Andrea-Mircea, Ekberg, Neda, Erhan, Umut, Liutkus, Joanne, Tariq, Mohd, and Holmes, Patrick (2022) Patients reaching treatment targets with once-weekly semaglutide in real‑world practice: pooled analysis of four SURE studies. In: [Presented at the Australasian Diabetes Congress 2022]. From: Australasian Diabetes Congress 2022, 8-10 August 2022, Brisbane, QLD, Australia.

Ramani, Subha, McKimm, Judy, Findyartini, Ardi, Nadarajah, Vishna Devi, Hays, Richard, Chisolm, Margaret S., Filipe, Helena P., Fornari, Alice, Kachur, Elizabeth K., Kusurkar, Rashmi A., Thampy, Harish, and Wilson, Keith W. (2021) Twelve tips for developing a global community of scholars in health professions education. Medical Teacher, 43 (8). pp. 966-971.

Ryan, Rachael Y.M., Lutzky, Viviana P., Herzig, Volker, Smallwood, Taylor B., Potriquet, Jeremy, Wong, Yide, Masci, Paul, Lavin, Martin F., King, Glenn F., Lopez, J. Alejandro, Ikonomopoulou, Maria P., and Miles, John J. (2020) Venom of the red-bellied black snake Pseudechis porphyriacus shows immunosuppressive potential. Toxins, 12 (11). 674.

S

Sadeghi, Mehdi, Karimi, Mohammad Reza, Karim, Amir Hossein, Farshbaf, Nafiseh Ghorbanpour, Barzegar, Abolfazl, and Schmitz, Ulf (2023) Network-Based and Machine-Learning Approaches Identify Diagnostic and Prognostic Models for EMT-Type Gastric Tumors. Genes, 14 (750).

Shah, Jaynish S., Milevskiy, Michael J.G., Petrova, Veronika, Au, Amy Y.M., Wong, Justin J.L., Visvader, Jane E., Schmitz, Ulf, and Rasko, John E.J. (2022) Towards resolution of the intron retention paradox in breast cancer. Breast Cancer Research, 24. 100.

Su, Chinh Tran-To, Lua, Wai-Heng, Poh, Jun-Jie, Ling, Wei-Li, Yeo, Joshua-Yi, and Gan, Samuel Ken-En (2021) Molecular insights of nickel binding to therapeutic antibodies as a possible new antibody superantigen. Frontiers in Immunology, 12. 676048.

Sun, Eun Jin, Wankell, Miriam, Palamuthusingam, Pranavan, McFarlane, Craig, and Hebbard, Lionel (2021) Targeting the PI3K/Akt/mTOR pathway in hepatocellular carcinoma. Biomedicines, 9 (11). 1639.

Schmitz, Ulf, Shah, Jaynish S., Dhungel, Bijay P., Monteuuis, Geoffray, Luu, Phuc-Loi, Petrova, Veronika, Metierre, Cynthia, Nair, Shalima S., Bailey, Charles G., Saunders, Verity A., Turhan, Ali G., White, Deborah L., Branford, Susan, Clark, Susan J., Hughes, Timothy P., Wong, Justin J.-L., and Rasko, John E.J. (2020) Widespread aberrant alternative splicing despite molecular remission in chronic myeloid leukaemia patients. Cancers, 12 (12). 3738.

Sathkumara, Harindra Darshana (2020) Mechanisms driving tuberculosis susceptibility and vaccine efficacy in HIV/AIDS and type 2 diabetes. PhD thesis, James Cook University.

Sadeghi, Mehdi, Ranjbar, Bijan, Ganjalikhany, Mohamad Reza, Khan, Faiz M., Schmitz, Ulf, Wolkenhauer, Olaf, and Gupta, Shailendra K. (2016) MicroRNA and transcription factor gene regulatory network analysis reveals key regulatory elements associated with prostate cancer progression. PLoS ONE, 11 (12). e0168760.

Schmitz, Ulf, and Wolkenhauer, Olaf (2016) Systems medicine. Methods in Molecular Biology, 1386 . Springer, New York, USA.

T

Taylor, Lauren, Wankell, Miriam, Saxena, Pankaj, McFarlane, Craig McFarlane, and Hebbard, Lionel (2021) Cell adhesion an important determinant of myogenesis and satellite cell activity. Biochimica et Biophysica Acta. Molecular Cell Research, 1869 (2). 119170.

V

Valencia-Hernandez, Ana Maria, Zillinger, Thomas, Ge, Zhengyu, Tan, Peck S., Cozijnsen, Anton, Mcfadden, Geoffrey I., Lahoud, Mireille H., Caminsch, Irina, Barchet, Winfried, Heath, William R., and Fernandez-Ruiz, Daniel (2023) Complexing CpG adjuvants with cationic liposomes enhances vaccine-induced formation of liver TRM cells. Vaccine. (In Press)

Valencia-Hernandez, Ana Maria, Ng, Wei Yi, Ghazanfari, Nazanin, Ghilas, Sonia, de Menezes, Maria N., Holz, Lauren E., Huang, Cheng, English, Kieran, Nuang, Myo, Tan, Peck Szee, Tullett, Kirsteen M., Steiner, Thiago M., Enders, Matthias H., Beattie, Lynette, Chua, Yu Cheng, Jones, Claerwen M., Cozijnsen, Anton, Mollard, Vanessa, Cai, Yeping, Bowen, David G., Purcell, Anthony W., La Gruta, Nicole L., Villadangos, Jose A., De Koning-ward, Tania, Barry, Alyssa E., Barchet, Winfried, Cockburn, Ian A., Mcfadden, Geoffrey I., Gras, Stephanie, Lahoud, Mireille H., Bertolino, Patrick, Schittenhelm, Ralf B., Caminschi, Irina, Heath, William R., and Fernandez-Ruiz, Daniel (2020) A Natural Peptide Antigen within the Plasmodium Ribosomal Protein RPL6 Confers Liver TRM Cell-Mediated Immunity against Malaria in Mice. Cell Host & Microbe, 27 (6). 950-962.e7.

W

Wangchuk, Phurpa, Samten, , and Jamtsho, Tenzin (2023) Phytopharmaceutical properties and quality assessment of two Himalayan medicinal plants, Meconopsis horridula and Meconopsis simplicifolia. Journal of Herbal Medicine, 38. 100628.

Wangchuk, Phurpa, Anderson, Dovile, Yeshi, Karma, and Loukas, Alex (2021) Identification of small molecules of the infective stage of human hookworm using LCMS-based metabolomics and lipidomics protocols. ACS Infectious Diseases, 7. pp. 3264-3276.

Watkins, Thomas S., and Miles, John J. (2021) The human T-cell receptor repertoire in health and disease and potential for omics integration. Immunology and Cell Biology, 99 (2). pp. 135-145.

Watkins, Thomas (2020) High-throughput and high-definition analysis of human T cell repertoires in health and disease. PhD thesis, James Cook University.

Weerakoon, Harshi, Potriquet, Jeremy, Shah, Alok K., Reed, Sarah, Jayakody, Buddhika, Kapil, Charu, Midha, Mukul K., Moritz, Robert L., Lepletier, Ailin, Mulvenna, Jason, Miles, John J., and Hill, Michelle M. (2020) A primary human T-cell spectral library to facilitate large scale quantitative T-cell proteomics. Scientific Data, 7 (1). 412.

Y

Yeshi, Karma, Ruscher, Roland, Loukas, Alex, and Wangchuk, Phurpa (2022) Immunomodulatory and biological properties of helminth-derived small molecules: Potential applications in diagnostics and therapeutics. Frontiers in Parasitology, 1. 984152.

Yeshi, Karma, and Wangchuk, Phurpa (2021) Essential oils and their bioactive molecules in health care. In: Mandal, Subhash C., Nayak, Amit Kumar, and Dhara, Amal Kumar, (eds.) Herbal Biomolecules in Health Care Applications. London, UK, Academic Press, United Kingdom, pp. 215-237.

Z

Zhao, Guangzu, Azuar, Armira, Toth, Istvan, and Skwarczynski, Mariusz (2021) A potent vaccine delivery system. Bio-protocol, 11 (7). e3973.