A

Antoun, Elie, Migliavacca, Eugenia, Garratt, Emma S., Barton, Sheila J., Titcombe, Phil, Westbury, Leo D., Baczynska, Alica, Dodds, Richards, Roberts, Helen C., Sayer, Avan A., Shaw, Sarah, Syddall, H.E., Sheppard, Allan, McFarlane, Craig, Karnani, Neerja, Forrester, Terrence, Cooper, Cyrus, Feige, Jerome N., Patel, Harnish P., Godfrey, Keith M., Lillycrop, Karen A., and EpiGen Global Research Consortium (2021) Altered H19/miR‐675 expression in skeletal muscle is associated with low muscle mass in community‐dwelling older adults. JCSM Rapid Communications, 4 (2). pp. 207-221.

Athukorala, Ajani, Phalen, David N., Das, Ashutosh, Helbig, Karla J., Forwood, Jade K., and Sarker, Subir (2021) Genomic Characterisation of a Highly Divergent Siadenovirus (Psittacine Siadenovirus F) from the Critically Endangered Orange-Bellied Parrot (Neophema chrysogaster). Viruses, 13 (9). 1714.

Adegboye, Oyelola, Field, Matt A., Kupz, Andreas, Pai, Saparna, Sharma, Dileep, Smout, Michael J., Wangchuk, Phurpa, Wong, Yide, and Loiseau, Claire (2021) Natural-product-based solutions for tropical infectious diseases. Clinical Microbiology Reviews, 34 (4). e00348-20.

Ali, Radiya G., Bellchambers, Helen M., Warr, Nicholas, Ahmed, Jehangir N., Barratt, Kristen S., Neill, Kieran, Diamand, Koula E.M., and Arkell, Ruth M. (2021) WNT-responsive SUMOylation of ZIC5 promotes murine neural crest cell development, having multiple effects on transcription. Journal of Cell Science, 134 (9). jcs256792.

Aghajani, Marra Jai, Yang, Tao, Schmitz, Ulf, James, Alexander, McCafferty, Charles Eugenio, de Souza, Paul, Niles, Navin, and Roberts, Tara L. (2020) Epithelial-to-mesenchymal transition and its association with PD-L1 and CD8 in thyroid cancer. Endocrine Connections, 9. pp. 1028-1041.

Amirkhah, Raheleh, Naderi-Meshkin, Hojjat, Shah, Jaynish S., Dunne, Philip D., and Schmitz, Ulf (2019) The intricate interplay between epigenetic events, alternative splicing and noncoding RNA deregulation in colorectal cancer. Cells, 8 (8). 929.

Amirkhah, Raheleh, Farazmand, Ali, Wolkenhauer, Olaf, and Schmitz, Ulf (2016) RNA systems biology for cancer: From diagnosis to therapy. In: Scmitz, U., and Wolkenhauer, O., (eds.) Systems Medicine. Methods in Molecular Biology, 1386 . Springer, New York, NY, USA, pp. 305-330.

Alla, Vijay, Kowtharapu, Bhavani S., Engelmann, David, Emmrich, Stephan, Schmitz, Ulf, Steder, Marc, and Pützer, Brigitte M. (2012) E2F1 confers anticancer drug resistance by targeting ABC transporter family members and Bcl-2 via the p73/DNp73-miR-205 circuitry. Cell Cycle, 11 (16). pp. 3067-3078.

Adams, Nico, Hoehndorf, Robert, Gkoutos, Georgios V., Hansen, Gensine, and Hennig, Christian (2011) PIDO: the primary immunodeficiency disease ontology. Bioinformatics, 27 (22). pp. 3193-3199.

B

Boekel, Pamela, Brereton, Sarah G., Doma, Kenji, Grant, Andrea, Kippin, Alex, Wilkinson, Matthew, and Morse, Levi (2023) Efficacy of surgeon-directed suprascapular and axillary nerve blocks in shoulder arthroscopy: a 3-arm prospective randomized controlled trial. JSES International, 7 (2). pp. 307-315.

Brosnan, Méadhbh, Pearce, Daniel J., O’Neill, Megan H., Loughnane, Gerard M., Fleming, Bryce, Zhou, Shou-Han, Chong, Trevor, Nobre, Anna C., Connell, Redmond G.O., and Bellgrove, Mark A. (2023) Evidence Accumulation Rate Moderates the Relationship between Enriched Environment Exposure and Age-Related Response Speed Declines. Journal of Neuroscience, 43 (37). pp. 6401-6414.

Boekel, Pamela, Rikard-Bell, Matthew, Grant, Andrea, Brandon, Benjamin, Doma, Kenji, O'Callaghan, William B., Wilkinson, Matthew, and Morse, Levi (2023) Image-derived instrumentation vs. conventional instrumentation with 3D planning for glenoid component placement in reverse total shoulder replacements: a randomized controlled trial. JSES International, 7 (4). pp. 614-622.

Barratt, Kristen S., Drover, Kyle A., Thomas, Zoë M., and Arkell, Ruth M. (2022) Patterning of the antero‐ventral mammalian brain: Lessons from holoprosencephaly comparative biology in man and mouse. WIREs Mechanisms of Disease, 14 (4). e1552.

Biros, Erik, Reznik, Jacqueline E., and Moran, Corey S. (2022) Role of inflammatory cytokines in genesis and treatment of atherosclerosis. Trends in Cardiovascular Medicine, 32 (3). pp. 138-142.

Bellchambers, Helen M., Barratt, Kristen S., Diamand, Koula E.M., and Arkell, Ruth M. (2021) SUMOylation Potentiates ZIC Protein Activity to Influence Murine Neural Crest Cell Specification. International Journal of Molecular Sciences, 22. 10437.

Bailey, Charles G., Gupta, Shailendra, Metierre, Cynthia, Amarasekera, Punkaja M.S., O'Young, Patrick, Kyaw, Wunna, Laletin, Tatyana, Francis, Habib, Semaan, Crystal, Sharifi Tabar, Mehdi, Singh, Krishna P., Mullighan, Charles G., Wolkenhauer, Olaf, Schmitz, Ulf, and Rasko, John (2021) Structure–function relationships explain CTCF zinc finger mutation phenotypes in cancer. Cellular and Molecular Life Sciences, 78. pp. 7519-7536.

Buitrago, Geraldine (2020) The anti-colitic properties of hookworm protein Na-AIP-1. PhD thesis, James Cook University.

Bayman, Gareth S., Groft, Stephen, van der Westhuizen, Francois H., Gassman, Safiyya D., du Plessis, Kelly, Coles, Emily P., Selebatso, Eda, Selebatso, Moses, Gaobinelwe, Boikobo, Selebatso, Tebogo, Joel, Dipesalema, Llera, Virginia A., Vorster, Barend C., Wuebbels, Barbara, Djoudalbaye, Benjamin, Austin, Christopher P., Kumuthini, Judit, Forman, John, Kaufmann, Petra, Chipeta, James, Gavhed, Désirée, Larsson, Annika, Stojiljkovic, Maja, Nordgren, Ann, Roldan, Emilio J.A., Taruscio, Domenica, Wong-Rieger, Durhane, Nowak, Kristen, Bilkey, Gemma A., Easteal, Simon, Bowdin, Sarah, Reichardt, Juergen K.V., Beltran, Sergi, Kosaki, Kenjiro, van Karnebeek, Clara D.M., Gong, Mengchun, Shuyang, Zhang, Mehrian-Shai, Ruty, Adams, David R., Puri, Ratna D., Zhang, Feng, Pachter, Nicholas, Muenke, Maximilian, Nellaker, Christoffer, Gahl, William A., Cederroth, Helene, Broley, Stephanie, Schoonen, Maryke, Boycott, Kym M., and Posada, Manuel (2020) A call for global action for rare diseases in Africa. Nature Genetics, 52. pp. 21-26.

Brown, Peter, RELISH Consortium, and Zhou, Yaoqi (2019) Large expert-curated database for benchmarking document similarity detection in biomedical literature search. Database: the journal of biological databases and curation, 2019. baz085.

Barratt, Kristen S., Diamand, Koula E.M., and Arkell, Ruth M. (2018) Identification of reference genes suitable for RT-qPCR studies of murine gastrulation and patterning. Mammalian Genome, 29. pp. 656-662.

Barratt, Kristen S., and Arkell, Ruth M. (2018) ZIC2 in Holoprosencephaly. In: UNSPECIFIED, (ed.) Zic family: Evolution, Development and Disease. Advances in Experimental Medicine and Biology, 1046 . Springer, Singapore, pp. 269-299.

Banowary, Banya, Dang, Van Tuan, Sarker, Subir, Connolly, Joanne H., Chenu, Jeremy, Groves, Peter, Ayton, Michelle, Raidal, Shane, Devi, Aruna, Vanniasinkam, Thiru, and Ghorashi, Seyed A. (2015) Differentiation of Campylobacter jejuni and Campylobacter coli using multiplex-PCR and high resolution melt curve analysis. PLoS ONE, 10 (9). e0138808.

Bhattacharya, A., Schmitz, U., Wolkenhauer, O., Schönherr, M., Raatz, Y., and Kunz, M. (2013) Regulation of cell cycle checkpoint kinase WEE1 by miR-195 in malignant melanoma. Oncogene, 32. pp. 3175-3183.

C

Cadwallader, Claire J., Steiniger, Jennifer, Cooper, Patrick S., Zhou, Shou-Han, Hendrikse, Joshua, Sumner, Rachael L., Kirk, Ian J., Chong, Trevor T.-J., and Coxon, James P. (2023) Acute exercise as a modifier of neocortical plasticity and aperiodic activity in the visual cortex. Scientific Reports, 13. 7491.

Chin, Xinlin, Cooper, Scott, and Martin, Priscilla (2023) Surgical management of primary gastric Ewing-like sarcoma at the lesser curvature. Journal of Surgical Case Reports, 2023 (9). rjad498.

Cobos, Claudia, Bansal, Paramjit S., Wilson, David T., Jones, Linda, Zhao, Guangzu, Field, Matthew A., Eichenberger, Ramon M., Pickering, Darren A., Ryan, Rachael Y.M., Ratnatunga, Champa N., Miles, John J., Ruscher, Roland, Giacomin, Paul R., Navarro, Severine, Loukas, Alex, and Daly, Norelle L. (2022) Peptides derived from hookworm anti-inflammatory proteins suppress inducible colitis in mice and inflammatory cytokine production by human cells. Frontiers in Medicine, 9. 934852.

Chaiyadet, Sujittra, Sotillo, Javier, Krueajampa, Watchara, Thongsen, Sophita, Smout, Michael, Brindley, Paul J., Laha, Thewarach, and Loukas, Alex (2022) Silencing of Opisthorchis viverrini Tetraspanin Gene Expression Results in Reduced Secretion of Extracellular Vesicles. Frontiers in Cellular and Infection Microbiology, 12. 827521.

Cobos Caceres, Claudia (2018) Development of peptides as potential drug leads for the treatment of inflammatory bowel diseases. PhD thesis, James Cook University.

D

Dunne, Cody L., Viguers, Kayla, Osman, Selena, Queiroga, Ana Catarina, Szpilman, David, and Peden, Amy E. (2023) A 2-year prospective evaluation of airway clearance devices in foreign body airway obstructions. Resuscitation Plus, 16. 100496.

Dorney, Ryley, Dhungel, Bijay P., Rasko, John E.J., Hebbard, Lionel, and Schmitz, Ulf (2023) Recent Advances in Cancer Fusion Transcript Detection. Briefings in Bioinformatics, 24 (1). bbac519.

Dongol, Yashad, Wilson, David T., Daly, Norelle L., Cardoso, Fernanda C., and Lewis, Richard J. (2023) Structure-function and rational design of a spider toxin Ssp1a at human voltage-gated sodium channel subtypes. Frontiers in Pharmacology, 14. 1277143.

Dewdney, Brittany (2021) Characterising the role of fructose metabolism in hepatocellular carcinoma. PhD thesis, James Cook University.

Deacy, Anthony M., Gan, Samuel Ken-En, and Derrick, Jeremy P. (2021) Superantigen recognition and interactions: functions, mechanisms and applications. Frontiers in Immunology, 12. 731845. pp. 3765-6781.

Dhungel, Bijay P., Monteuuis, Geoffray, Giardina, Caroline, Tabar, Mehdi S., Feng, Yue, Metierre, Cynthia, Ho, Sarah, Nagarajah, Rajini, Fontaine, Angela R.M., Shah, Jaynish S., Gokal, Divya, Bailey, Charles G., Schmitz, Ulf, and Rasko, John E.J. (2021) The fusion of CLEC12A and MIR223HG arises from a trans‐splicing event in normal and transformed human cells. International Journal of Molecular Sciences, 22. 12178.

D’Angelo, Carla S., Hermes, Azure, McMaster, Christopher M., Prichep, Elissa, Richer, Étienne, van der Westhuizen, Francois H., Repetto, Gabriela M., Mengchun, Gong, Malherbe, Helen, Reichardt, Juergen K.V., Arbour, Laura, Hudson, Maui, du Plessis, Kelly, Haendel, Melissa, Wilcox, Phillip, Lynch, Sally Ann, Rind, Shamir, Easteal, Simon, Estivill, Xavier, Thomas, Yarlalu, and Baynam, Gareth (2020) Barriers and considerations for diagnosing rare diseases in Indigenous populations. Frontiers in Pediatrics, 8. 579924.

Das, Shubhagata, Sarker, Subir, Peters, Andrew, Ghorashi, Seyed A., Phalen, David, Forwood, Jade K., and Raidal, Shane R. (2016) Evolution of circoviruses in lorikeets lags behind its hosts. Molecular Phylogenetics and Evolution, 100. pp. 281-291.

E

Enjeti, Aditya, Sathkumara, Harindra Darshana, and Kupz, Andreas (2023) Impact of the gut-lung axis on tuberculosis susceptibility and progression. Frontiers in Microbiology, 14. 1209932. pp. 1-8.

Emran, Abdullah Al, Nsengimana, Jérémie, Punnia-Moorthy, Gaya, Schmitz, Ulf, Gallagher, Stuart J., Newton-Bishop, Julia, Tiffen, Jessamy C., and Hersey, Peter (2020) Study of the female sex survival advantage in melanoma—a focus on x-linked epigenetic regulators and immune responses in two cohorts. Cancers, 12. 2082.

F

Flores-Valdez, Mario Alberto, Kupz, Andreas, and Subbian, Selvakumar (2022) Recent Developments in Mycobacteria-Based Live Attenuated Vaccine Candidates for Tuberculosis. Biomedicines, 10 (11). 2749.

Fujii, Toshiyuki, Kato, Chizu, Mahan, Brandon, and Moynier, Frédéric (2021) Study on the Isotope fractionation of Zinc in Complexation with Macrocyclic Polyethers. Zeitschrift fuer Anorganische und Allgemeine Chemie, 647 (6). pp. 599-605.

Flaherty, Briana R., Talundzic, Eldin, Barratt, Joel, Kines, Kristine J., Olsen, Christian, Lane, Meredith, Sheth, Mili, and Bradbury, Richard S. (2018) Restriction enzyme digestion of host DNA enhances universal detection of parasitic pathogens in blood via targeted amplicon deep sequencing. Microbiome, 6 (1). 164.

G

Green, Jessica Emily, Berk, Michael, Mohebbi, Mohammadreza, Loughman, Amy, McGuinness, Amelia J., Castle, David, Chatterton, Mary Lou, Perez, Joahna, Strandwitz, Philip, Athan, Eugene, Hair, Christopher, Nierenberg, Andrew A., Cryan, John F., and Jacka, Felice (2023) Feasibility, Acceptability, and Safety of Faecal Microbiota Transplantation in the Treatment of Major Depressive Disorder: A Pilot Randomized Controlled Trial. Canadian Journal of Psychiatry, 68 (5). pp. 315-326.

Gillman, Rhys, Field, Matt A., Schmitz, Ulf, Karamatic, Rozemary, and Hebbard, Lionel (2023) Identifying cancer driver genes in individual tumours. Computational and Structural Biotechnology Journal, 21. pp. 5028-5038.

Giribaldi, Julien, Chemin, Jean, Tuifua, Marie, Deuis, Jennifer R., Mary, Rosanna, Vetter, Irina, Wilson, David T, Daly, Norelle L., Schroeder, Christina I., Bourinet, Emmanuel, and Dutertre, Sébastien (2023) Pmu1a, a novel spider toxin with dual inhibitory activity at pain targets hNaV1.7 and hCaV3 voltage-gated channels. FEBS Journal, 290 (14). pp. 3688-3702.

Gunaratnam, Cadric, King, Thomas, Moloney, Thomas P., Boggild, Mike, and Goodwin, Todd (2023) Susac syndrome: A case report with initial presentation of incomplete bitemporal hemianopia. Journal of Surgical Case Reports, 2023 (10). rjad541.

Gualtieri, Linda, Yong, Ronald, Ah-Kion, Jessley, Jamil, Amanda L.A., Bazaei, Asmae, Kotecha, Jhanvi, Long, Sharron, Silcock, Gloria, and Miller, Catherine M. (2022) Droplet Distribution in a University Dental Clinic Setting: The Importance of High-Volume Evacuation. Healthcare, 10 (9). 1799.

Grasby, Katrina, Jahanshad, Neda, Painter, Jodie N., Colodro-Conde, Lucía, Bralten, Janita, Hibar, Derrek P., Lind, Penelope A., Pizzagalli, Fabrizio, Ching, Christopher R. K., McMahon, Mary Agnes B., Shatokhina, Natalia, Zsembik, Leo C. P., Thomopoulos, Sophia I., Zhu, Alyssa H., Strike, Lachlan T., Agartz, Ingrid, Alhusaini, Saud, Almeida, Marcio A. A., Alnæs, Dag, Amlien, Inge K., Andersson, Micael, Ard, Tyler, Armstrong, Nicola J., Ashley-Koch, Allison, Atkins, Joshua R., Bernard, Manon, Brouwer, Rachel M., Buimer, Elizabeth E. L., Bülow, Robin, Bürger, Christian, Cannon, Dara M., Chakravarty, Mallar, Chen, Qiang, Cheung, Joshua W., Couvy-Duchesne, Baptiste, Dale, Anders M., Dalvie, Shareefa, de Araujo, Tânia K., de Zubicaray, Greig I., de Zwarte, Sonja M. C., den Braber, Anouk, Doan, Nhat Trung, Dohm, Katharina, Ehrlich, Stefan, Engelbrecht, Hannah-Ruth, Erk, Susanne, Fan, Chun Chieh, Fedko, Iryna O., Foley, Sonya F., Ford, Judith M., Fukunaga, Masaki, Garrett, Melanie E., Ge, Tian, Giddaluru, Sudheer, Goldman, Aaron L., Green, Melissa J., Groenewold, Nynke A., Grotegerd, Dominik, Gurholt, Tiril P., Gutman, Boris A., Hansell, Narelle K., Harris, Mathew A., Harrison, Marc B., Haswell, Courtney C., Hauser, Michael, Herms, Stefan, Heslenfeld, Dirk J., Ho, New Fei, Hoehn, David, Hoffmann, Per, Holleran, Laurena, Hoogman, Martine, Hottenga, Jouke-Jan, Ikeda, Masashi, Janowitz, Deborah, Jansen, Iris E., Jia, Tianye, Jockwitz, Christiane, Kanai, Ryota, Karama, Sherif, Kasperaviciute, Dalia, Kaufmann, Tobias, Kelly, Sinead, Kikuchi, Masataka, Klein, Marieke, Knapp, Michael, Knodt, Annchen R., Krämer, Bernd, Lam, Max, Lancaster, Thomas M., Lee, Phil H., Lett, Tristram A., Lewis, Lindsay B., Lopes-Cendes, Iscia, Luciano, Michelle, Macciardi, Fabio, Marquand, Andre F., Mathias, Samuel R., Melzer, Tracy R., Milaneschi, Yuri, Mirza-Schreiber, Nazanin, Moreira, Jose C. V., Mühleisen, Thomas W., Müller-Myhsok, Bertram, Najt, Pablo, Nakahara, Soichiro, Nho, Kwangsik, Olde Loohuis, Loes M., Orfanos, Dimitri Papadopoulos, Pearson, John F., Pitcher, Toni L., Pütz, Benno, Quidé, Yann, Ragothaman, Anjanibhargavi, Rashid, Faisal M., Reay, William R., Redlich, Ronny, Reinbold, Céline S., Repple, Jonathan, Richard, Geneviève, Riedel, Brandalyn C., Risacher, Shannon L., Rocha, Cristiane S., Mota, Nina Roth, Salminen, Lauren, Saremi, Arvin, Saykin, Andrew J., Schlag, Fenja, Schmaal, Lianne, Schofield, Peter R., Secolin, Rodrigo, Shapland, Chin Yang, Shen, Li, Shin, Jean, Shumskaya, Elena, Sønderby, Ida E., Sprooten, Emma, Tansey, Katherine E., Teumer, Alexander, Thalamuthu, Anbupalam, Tordesillas-Gutiérrez, Diana, Turner, Jessica A., Uhlmann, Anne, Vallerga, Costanza Ludovica, van der Meer, Dennis, van Donkelaar, Marjolein M. J., van Eijk, Liza, van Erp, Theo G. M., van Haren, Neeltje E. M., van Rooij, Daan, van Tol, Marie-José, Veldink, Jan H., Verhoef, Ellen, Walton, Esther, Wang, Mingyuan, Wang, Yunpeng, Wardlaw, Joanna M., Wen, Wei, Westlye, Lars T., Whelan, Christopher D., Witt, Stephanie H., Wittfeld, Katharina, Wolf, Christiane, Wolfers, Thomas, Wu, Jing Qin, Yasuda, Clarissa L., Zaremba, Dario, Zhang, Zuo, Zwiers, Marcel P., Artiges, Eric, Assareh, Amelia A., Ayesa-Arriola, Rosa, Belger, Aysenil, Brandt, Christine L., Brown, Gregory G., Cichon, Sven, Curran, Joanne E., Davies, Gareth E., Degenhardt, Franziska, Dennis, Michelle F., Dietsche, Bruno, Djurovic, Srdjan, Doherty, Colin P., Espiritu, Ryan, Garijo, Daniel, Gil, Yolanda, Gowland, Penny A., Green, Robert C., Häusler, Alexander N., Heindel, Walter, Ho, Beng-Choon, Hoffmann, Wolfgang U., Holsboer, Florian, Homuth, Georg, Hosten, Norbert, Jack, Clifford R., Jang, MiHyun, Jansen, Andreas, Kimbrel, Nathan A., Kolskår, Knut, Koops, Sanne, Krug, Axel, Lim, Kelvin O., Luykx, Jurjen J., Mathalon, Daniel H., Mather, Karen A., Mattay, Venkata S., Matthews, Sarah, Mayoral Van Son, Jaqueline, McEwen, Sarah C., Melle, Ingrid, Morris, Derek W., Mueller, Bryon A., Nauck, Matthias, Nordvik, Jan E., Nöthen, Markus M., O’Leary, Daniel S., Opel, Nils, Martinot, Marie-Laure Paillère, Pike, G. Bruce, Preda, Adrian, Quinlan, Erin B., Rasser, Paul E., Ratnakar, Varun, Reppermund, Simone, Steen, Vidar M., Tooney, Paul A., Torres, Fábio R., Veltman, Dick J., Voyvodic, James T., Whelan, Robert, White, Tonya, Yamamori, Hidenaga, Adams, Hieab H. H., Bis, Joshua C., Debette, Stephanie, Decarli, Charles, Fornage, Myriam, Gudnason, Vilmundur, Hofer, Edith, Ikram, M. Arfan, Launer, Lenore, Longstreth, W. T., Lopez, Oscar L., Mazoyer, Bernard, Mosley, Thomas H., Roshchupkin, Gennady V., Satizabal, Claudia L., Schmidt, Reinhold, Seshadri, Sudha, Yang, Qiong, Alvim, Marina K. M., Ames, David, Anderson, Tim J., Andreassen, Ole A., Arias-Vasquez, Alejandro, Bastin, Mark E., Baune, Bernhard T., Beckham, Jean C., Blangero, John, Boomsma, Dorret I., Brodaty, Henry, Brunner, Han G., Buckner, Randy L., Buitelaar, Jan K., Bustillo, Juan R., Cahn, Wiepke, Cairns, Murray J., Calhoun, Vince, Carr, Vaughan J., Caseras, Xavier, Caspers, Svenja, Cavalleri, Gianpiero L., Cendes, Fernando, Corvin, Aiden, Crespo-Facorro, Benedicto, Dalrymple-Alford, John C., Dannlowski, Udo, de Geus, Eco J. C., Deary, Ian J., Delanty, Norman, Depondt, Chantal, Desrivières, Sylvane, Donohoe, Gary, Espeseth, Thomas, Fernández, Guillén, Fisher, Simon E., Flor, Herta, Forstner, Andreas J., Francks, Clyde, Franke, Barbara, Glahn, David C., Gollub, Randy L., Grabe, Hans J., Gruber, Oliver, Håberg, Asta K., Hariri, Ahmad R., Hartman, Catharina A., Hashimoto, Ryota, Heinz, Andreas, Henskens, Frans A., Hillegers, Manon H. J., Hoekstra, Pieter J., Holmes, Avram J., Hong, L. Elliot, Hopkins, William D., Hulshoff Pol, Hilleke E., Jernigan, Terry L., Jönsson, Erik G., Kahn, René S., Kennedy, Martin A., Kircher, Tilo T. J., Kochunov, Peter, Kwok, John B. J., Le Hellard, Stephanie, Loughland, Carmel M., Martin, Nicholas G., Martinot, Jean-Luc, McDonald, Colm, McMahon, Katie L., Meyer-Lindenberg, Andreas, Michie, Patricia T., Morey, Rajendra A., Mowry, Bryan, Nyberg, Lars, Oosterlaan, Jaap, Ophoff, Roel A., Pantelis, Christos, Paus, Tomas, Pausova, Zdenka, Penninx, Brenda W. J. H., Polderman, Tinca J. C., Posthuma, Danielle, Rietschel, Marcella, Roffman, Joshua L., Rowland, Laura M., Sachdev, Perminder S., Sämann, Philipp G., Schall, Ulrich, Schumann, Gunter, Scott, Rodney J., Sim, Kang, Sisodiya, Sanjay M., Smoller, Jordan W., Sommer, Iris E., St Pourcain, Beate, Stein, Dan J., Toga, Arthur W., Trollor, Julian N., Van der Wee, Nic J. A., van ’t Ent, Dennis, Völzke, Henry, Walter, Henrik, Weber, Bernd, Weinberger, Daniel R., Wright, Margaret J., Zhou, Juan, Stein, Jason L., Thompson, Paul M., and Medland, Sarah E. (2020) The genetic architecture of the human cerebral cortex. Science, 367 (6484). eaay6690.

Gupta, Shailendra K., Jaitly, Tanushree, Schmitz, Ulf, Schuler, Gerold, Wolkenhauer, Olaf, and Vera, Julio (2016) Personalized cancer immunotherapy using Systems Medicine approaches. Briefings in Bioinformatics, 17 (3). pp. 453-467.

Guebel, Daniel V., Schmitz, Ulf, Wolkenhauer, Olaf, and Vera, Julio (2012) Analysis of cell adhesion during early stages of colon cancer based on an extended multi-valued logic approach. Molecular BioSystems, 8. pp. 1230-1242.

Gupta, Shailendra K., Gupta, Shishir K., Smita, Suchi, Srivastava, Mugdha, Lai, Xin, Schmitz, Ulf, Rahman, Qamar, Wolkenhauer, Olaf, and Vera, Julio (2011) Computational analysis and modeling the effectiveness of 'Zanamivir' targeting neuraminidase protein in pandemic H1N1 strains. Infection, Genetics and Evolution, 11 (5). pp. 1072-1082.

Gupta, Shishir K., Srivastava, Mugdha, Akhoon, Bashir A., Smita, Suchi, Schmitz, Ulf, Wolkenhauer, Olaf, Vera, Julio, and Gupta, Shailendra (2011) Identification of immunogenic consensus T-cell epitopes in globally distributed influenza-A H1N1 neuraminidase. Infection, Genetics and Evolution, 11 (2). pp. 308-319.

H

Halasz, George, and Amos, Andrew (2023) Gender dysphoria: Reconsidering ethical and iatrogenic factors in clinical practice. Australasian Psychiatry, 32 (1). pp. 26-31.

Haque, Md Hakimul, Islam, Md Zohurul, Miah, Md Lovelu, Das, Sunny Kumar, and Sarker, Subir (2023) Molecular characterization of multidrug-resistant Escherichia coli isolated from human urine infections with their antibiogram profile. Journal of Advanced Biotechnology and Experimental Therapeutics, 6 (1). pp. 172-183.

Hoad, Mikayla, Cross, Emily M., Donnelly, Camilla M., Sarker, Subir, Roby, Justin A., and Forwood, Jade K. (2023) Structural Characterization of Porcine Adeno-Associated Virus Capsid Protein with Nuclear Trafficking Protein Importin Alpha Reveals a Bipartite Nuclear Localization Signal. Viruses, 15 (2). 315.

Herzig, Volker, Sunagar, Kartik, Wilson, David T.R., Pineda, Sandy S., Israel, Mathilde R., Dutertre, Sebastien, McFarland, Brianna Sollod, Undheim, Eivind A.B., Hodgson, Wayne C., Alewood, Paul F., Lewis, Richard J., Bosmans, Frank, Vetter, Irina, King, Glenn F., and Fry, Bryan G. (2020) Australian funnel-web spiders evolved human-lethal δ-hexatoxins for defense against vertebrate predators. Proceedings of the National Academy of Sciences of the United States of America, 117 (40). pp. 24920-24928.

Huynh, Pacific, Phie, James, Krishna, Smriti Murali, and Golledge, Jonathan (2020) Systematic review and meta-analysis of mouse models of diabetes-associated ulcers. BMJ Open Diabetes Research & Care, 8 (1). e000982.

Houtmeyers, Rob, Tchouate Gainkam, Olive, Glanville-Jones, Hannah A., Van den Bosch, Ben, Chappell, Anna, Barratt, Kristen S., Souopgui, Jacob, Tejpar, Sabine, and Arkell, Ruth M. (2016) Zic2mutation causes holoprosencephaly via disruption of NODAL signalling. Human Molecular Genetics, 25 (18). pp. 3946-3959.

Hennig, Christian, Adams, Nico, and Hansen, Gesine (2009) A versatile platform for comprehensive chip-based explorative cytometry. Cytometry Part A, 75A (4). pp. 362-370.

I

Inyang, Imo, Barnett, Tony, Obamiro, Kehinde, Rogers, Merran, Kilgour, Andrew, and Visentin, Denis (2023) ‘Growing your own’ a case study of a collaborative training program in medical radiation science. Journal of Medical Radiation Sciences, 70 (4). pp. 398-405.

J

Jamtsho, Tenzin, Yeshi, Karma, Perry, Matthew J., Loukas, Alex, and Wangchuk, Phurpa (2024) Approaches, Strategies and Procedures for Identifying Anti-Inflammatory Drug Lead Molecules from Natural Products. Pharmaceuticals, 17 (13). 283.

Jamtsho, Tenzin, Loukas, Alex, and Wangchuk, Phurpa (2024) Pharmaceutical Potential of Remedial Plants and Helminths for Treating Inflammatory Bowel Disease. Pharmaceuticals, 17 (7). 819.

Jamtsho, Tenzin, Ugyen, and Wangchuk, Phurpa (2023) Auricularia auricula-judae (Bull.) Major Bioactive Compounds, Health Benefits, and Pharmacological Activities. In: Sharma, Ajay, Nayik, Gulzar, and Bhardwaj, Garima, (eds.) Edible and Medicinal Mushrooms of the Himalayas. Natural Products Chemistry of Global Plants . CRC Press, Boca Raton, Florida, USA, pp. 19-43.

Jamtsho, Tenzin, Ugyen, and Wangchuk, Phurpa (2023) Datura stramonium (Thorn Apple or Devil’s Trumpet). In: Husen, Azamal, (ed.) Exploring Poisonous Plants: Medicinal Values, Toxicity Responses, and Therapeutic Uses. CRC Press, Boca Raton, Florida, USA, pp. 219-240.

Jensen, Sacha A., Atwa, Ondine, and Handford, Penny A. (2021) Assembly assay identifies a critical region of human fibrillin-1 required for 10 - 12 nm diameter microfibril biogenesis. PLoS ONE, 16 (3). e0248532.

K

Koushik, Tejas M., Miller, Catherine M., and Antunes, Elsa (2023) Bone Tissue Engineering Scaffolds: Function of Multi-Material Hierarchically Structured Scaffolds. Advanced Healthcare Materials, 12 (9). 2202766.

Kamath, Sandip D., Bublin, Merima, Kitamura, Katsumasa, Matsui, Teruaki, Ito, Komei, and Lopata, Andreas L. (2023) Cross-reactive epitopes and their role in food allergy. Journal of Allergy and Clinical Immunology, 151 (5). pp. 1178-1190.

Koushik, Tejas M., Miller, Catherine M., and Antunes, Elsa (2023) Optimisation of two-step sintering parameters to produce bioactive and dense zirconia-hydroxyapatite composite ceramics. Journal of the European Ceramic Society, 43 (5). pp. 2222-2233.

Kirk, Frazer, Chang, Shantel, Yong, Matthew S., He, Cheng, Hughes, Ian, Yadav, Sumit, Lo, Wing, Cole, Christopher, Windsor, Morgan, Naidoo, Rishendran, and Stroebel, Andrie (2023) Thoracic Surgery and the Elderly; Is Lobectomy Safe in Octogenarians? Heart, Lung and Circulation, 32 (6). pp. 755-762.

Kirk, Frazer, Crathern, Kelsie, Chang, Shantel, Yong, Matthew S., He, Cheng, Hughes, Ian, Yadav, Sumit, Lo, Wing, Cole, Christopher, Windsor, Morgan, Naidoo, Rishendran, and Stroebel, Andrie (2023) The influence of the COVID-19 pandemic on lung cancer surgery in Queensland. ANZ Journal of Surgery, 93 (6). pp. 1536-1542.

Kabasser, Stefan, Pratap, Kunal, Kamath, Sandip, Taki, Aya, Dang, Thanh, Koplin, Jennifer, Perrett, Kirsten, Hummel, Karin, Radauer, Christian, Breiteneder, Heimo, Lopata, Andreas L., and Bublin, Merima (2022) Identification of vicilin, legumin and antimicrobial peptide 2a as macadamia nut allergens. Food Chemistry, 370. 131028.

Karimi, Mohammad Reza, Karimi, Amir Hossein, Abolmaali, Shamsozoha, Mehdi, Sadeghi, and Schmitz, Ulf (2022) Prospects and challenges of cancer systems medicine: from genes to disease networks. Briefings in Bioinformatics, 23 (1). bbab343.

Kong, Xiang-Zhen, ENIGMA Laterality Working Group, and Franks, Clyde (2022) Reproducibility in the absence of selective reporting: an illustration from large‐scale brain asymmetry research. Human Brain Mapping, 43 (1). pp. 244-254.

Krishnan, Anirudh, Chilton, Emily, Raman, Jaishankar, Saxena, Pankaj, McFarlane, Craig, Trollope, Alexandra F., Kinobe, Robert, and Chilton, Lisa (2021) Are interactions between epicardial adipose tissue, cardiac fibroblasts and cardiac myocytes instrumental in atrial fibrosis and atrial fibrillation? Cells, 10 (9). 2501.

Kraeuter, Ann-Katrin, Phillips, Riana, and Sarnyai, Zoltan (2020) The gut microbiome in psychosis from mice to men: a systematic review of preclinical and clinical studies. Frontiers in Psychiatry, 11. 799.

Kong, Xiang-Zhen, Mathias, Samuel R., Guadalupe, Tulio, Laterality Working Group, ENIGMA, Glahn, David C., Franke, Barbara, Crivello, Fabrice, Tzourio-Mazoyer, Nathalie, Fisher, Simon E., Thompson, Paul M., and Francks, Clyde (2018) Mapping cortical brain asymmetry in 17,141 healthy individuals worldwide via the ENIGMA Consortium. Proceedings of the National Academy of Sciences of the United States of America, 115. E5154-E5163.

Khan, Faiz M., Marquardt, Stephan, Gupta, Shailendra K., Knoll, Susanne, Schmitz, Ulf, Spitschak, Alf, Engelmann, David, Vera, Julio, Wolkenhauer, Olaf, and Pützer, Brigitte M. (2017) Unraveling a tumor type-specific regulatory core underlying E2F1-mediated epithelial-mesenchymal transition to predict receptor protein signatures. Nature Communications, 8. 198.

Knoll, Susanne, Fürst, Katharina, Kowtharapu, Bhavani, Schmitz, Ulf, Marquardt, Stephan, Wolkenhauer, Olaf, Martin, Hubert, and Pützer, Brigitte (2014) E2F1 induces miR-224/452 expression to drive EMT through TXNIP downregulation. EMBO Reports, 15. pp. 1315-1329.

L

Lee, Celine Jessica, Boyce, Aaron, Chequer de Souza, Julia, and Evans, Rebecca (2024) Store-and-forward (asynchronous) doctor-to-dermatologist non-skin cancer specific teledermatology services in Australia: A scoping review. Australasian Journal of Dermatology, 65 (1). pp. 37-48.

Liu, Jianan, Li, Hao, Huang, Tao, Ahn, Euijoon, Han, Kang, Razi, Adeel, Xiang, Wei, Kim, Jinman, and Feng, David Dagan (2024) Unsupervised Representation Learning for 3-Dimensional Magnetic Resonance Imaging Super-Resolution with Degradation Adaptation. IEEE Transactions on Artificial Intelligence. (In Press)

Lane, Meredith, Kashani, Mitra, Barratt, Joel L.N., Qvarnstrom, Yvonne, Yabsley, Michael J., Garrett, Kayla B., and Bradbury, Richard S. (2023) Application of a universal parasite diagnostic test to biological specimens collected from animals. International Journal for Parasitology: Parasites and Wildlife, 20. pp. 20-30.

Li, Chenqi, Lammie, Corey, Amirsoleimani, Amirali, Rahimi Azghadi, Mostafa, and Genov, Roman (2023) Simulation of memristive crossbar arrays for seizure detection and prediction using parallel Convolutional Neural Networks [Formula presented]. Software Impacts, 15 (March). 100473.

Lorenz, C., Libonati, R., Belém, L.B.C., Oliveira, A., Chiaravalloti, R M., Nunes, A.V., Batista, E.K.L., Fernandes, G.W., Chiaravalloti-Neto, F., Damasceno-Junior, G.A., Berlinck, C.N., and Roque, F.O. (2023) Wildfire and smoke association with COVID-19 cases in the Pantanal wetland, Brazil. Public Health, 225. pp. 311-319.

Lelliott, Emily, Ramsbottom, Kelly, Dowling, Mark, Shembrey, Carolyn, Noori, Tahereh, Kearney, Conor, Michie, Jessica, Parish, Ian, Jordan, Margaret, Baxter, Alan, Young, Niel, Brennan, Amelia, and Oliaro, Jane (2022) NKG7 enhances CD8+ T cell synapse efficiency to limit inflammation. Frontiers in Immunology, 13. 931630.

Leow, Melvin Khee Shing, Dogra, Shaillay, Ge, Xiaojia, Chuah, Khoon Leong, Liew, Huiling, Loke, Kelvin Siu Hoong, and McFarlane, Craig (2021) Paraneoplastic secretion of multiple phosphatonins from a deep fibrous histiocytoma causing oncogenic osteomalacia. The Journal of Clinical Endocrinology & Metabolism, 106 (5). e2299-e2308.

Lai, Xin, Eberhardt, Martin, Schmitz, Ulf, and Vera, Julio (2019) Systems biology-based investigation of cooperating microRNAs as monotherapy or adjuvant therapy in cancer. Nucleic Acids Research, 47 (15). pp. 7753-7766.

Lai, Xin, Gupta, Shailendra K., Schmitz, Ulf, Marquardt, Stephan, Knoll, Susanne, Spitschak, Alf, Wolkenhauer, Olaf, Pützer, Brigitte M., and Vera, Julio (2018) MiR-205-5p and miR-342-3p cooperate in the repression of the E2F1 transcription factor in the context of anticancer chemotherapy resistance. Theranostics, 8 (4). pp. 1106-1120.

Liu, Xiaoli, Simpson, Jeremy, Brunt, Keith, Ward, Christopher, Hall, Sean, Kinobe, Robert, Barrette, Valerie, Tse, M. Yat, Pang, Stephen, Pachori,, Alok, Dzau, Victor, Ogunyankin,, Kofo, and Melo, Luis (2007) Preemptive heme oxygenase-1 gene delivery reveals reduced mortality and preservation of left ventricular function 1 yr after acute myocardial infarction. American Journal of Physiology-Heart and Circulatory Physiology, 293. pp. 48-59.

M

Muema, Felix Wambua, Nanjala, Consolata, Oulo, Millicent Akinyi, and Wangchuk, Phurpa (2023) Phytochemical Content and Antidiabetic Properties of Most Commonly Used Antidiabetic Medicinal Plants of Kenya. Molecules, 28 (20). 7202.

Moynier, Frédéric, Merland, Ariane, Rigoussen, Dimitri, Moureau, Julien, Paquet, Marine, Mahan, Brandon, and LeBorgne, Marie (2022) Baseline distribution of stable copper isotope compositions of the brain and other organs in mice. Metallomics, 14 (5). mfac017.

Moynier, Frédéric, Hu, Yan, Dai, Wei, Kubik, Edith, Mahan, Brandon, and Moureau, Julien (2021) Potassium isotopic composition of seven widely available biological standards using collision cell (CC)-MC-ICP-MS. Journal of Analytical Atomic Spectrometry, 36 (11). pp. 2444-2448.

Monteuuis, Geoffray, Schmitz, Ulf, Petrova, Veronika, Kearney, Padraic S., and Rasko, John E.J. (2020) Holding on to junk bonds: intron retention in cancer and therapy. Cancer Research, 81 (4). pp. 779-789.

Marshall, A.D., Bailey, C.G., Champ, K., Vellozzi, M., O'Young, P., Metierre, C., Feng, Y., Thoeng, A., Richards, A.M., Schmitz, U., Biro, M., Jayasinghe, R., Ding, L., Anderson, L., Mardis, E.R., and Rasko, J.E.J. (2017) CTCF genetic alterations in endometrial carcinoma are pro-tumorigenic. Oncogene, 36. pp. 4100-4110.

Masic, Anita, Valencia Hernandez, Ana Maria, Hazra, Sudipta, Glaser, Jan, Holzgrabe, Ulrike, Hazra, Banasri, and Schurigt, Uta (2015) Cinnamic Acid Bornyl Ester Derivatives from Valeriana wallichii Exhibit Antileishmanial In Vivo Activity in Leishmania major-Infected BALB/c Mice. PLoS ONE, 10 (11). e0142386.

N

Nahain, Abdullah Al, Li, Jinlin, Modhiran, Naphak, Watterson, Daniel, Li, Jin Ping, Ignjatovic, Vera, Monagle, Paul, Tsanaktsidis, John, Vamvounis, George, and Ferro, Vito (2024) Antiviral Activities of Heparan Sulfate Mimetic RAFT Polymers Against Mosquito-borne Viruses. ACS Applied Bio Materials, 7 (5). pp. 2862-2871.

Naseem, Muhammad Noman, Allavena, Rachel, Raza, Ali, Constantinoiu, Constantin, McGowan, Michael, Turni, Conny, Kamran, Muhammad, Tabor, Ala E., and James, Peter (2023) Pathology and pathogenesis of cutaneous lesions in beef cattle associated with buffalo fly infestation. Frontiers in Veterinary Science, 9. 971813.

Nisa, Annuurun, Kipper, Franciele C., Panigrahy, Dipak, Tiwari, Sangeeta, Kupz, Andreas, and Subbian, Selvakumar (2022) Different modalities of host cell death and their impact on Mycobacterium tuberculosis infection. American Journal of Physiology: cell physiology, 323 (5). C1444-C1474.

Nugraha, Ari Satia, Agustina, Riza Putri, Syafi, Mlrza, Rani, Dinar Mutia, Winarto, Naura Bathari, Triatmoko, Bawon, Pratama, Antonius Nugraha Widhi, Keller, Paul A., and Wangchuk, Phurpa (2022) Phytochemistry and Pharmacology of Medicinal Plants Used by the Tenggerese Society in Java Island of Indonesia. Molecules, 27 (21). 7532.

Novelli, Giuseppe, Biancolella, Michela, Mehrian-Shai, Ruty, Erickson, Caroline, Godri Pollitt, Krystal J., Vasiliou, Vasilis, Watt, Jessica, and Reichardt, Juergen K.V. (2020) COVID-19 update: the first 6 months of the pandemic. Human Genomics, 14. 48.

Naderi-Meshkin, Hojjat, Lai, Xin, Amirkhah, Raheleh, Vera, Julio, Rasko, John E.J., and Schmitz, Ulf (2019) Exosomal lncRNAs and cancer: Connecting the missing links. Bioinformatics, 35 (2). pp. 352-360.

O

Oar, Bronwyn, Brown, Amy, Newman, Glen, Boles, Alan, Rumley, Christopher N., Doyle, Rachel, Baines, John, and Tan, Alex (2024) Improvement in male pelvis magnetic resonance image contouring following radiologist-delivered training. Journal of Medical Radiation Sciences, 71 (1). pp. 114-122.

Okonkwo, Emenike George, Romo-Rico, Jesus, Ozoude, Chinemerem Jerry, and Obasi, Kingsley Job (2024) Synthesis and applications of bioresorbable polymers for tissue engineering scaffolds. In: Verma, Deepak, Okhawilai, Manunya, Goh, Kheng Lim, Ramakrishna, Seeram, Pasbakhsh, Pooria, and Sharma, Mohit, (eds.) Bioresorbable Polymers and their Composites: Characterization and Fundamental Processing for Pharmaceutical and Medical Device Development. UNSPECIFIED, Cambridge, MA, United States, pp. 125-145.

Oehler, Josphine B., Wright, Helen, Stark, Zornitza, Mallett, Andrew, and Schmitz, Ulf (2023) The application of long‑read sequencing in clinical settings. Human Genomics, 17. 73.

Odell, Luke R., Jones, Nigel C., Chau, Ngoc, Robertson, Mark J., Ambrus, Joseph I., Deane, Fiona M., Young, Kelly A., Whiting, Ainslie, Xue, Jing, Prichard, Kate, Daniel, James A., Gorgani, Nick N., O'Brien, Terence J., Robinson, Phillip J., and McCluskey, Adam (2023) The sulfonadyns: a class of aryl sulfonamides inhibiting dynamin I GTPase and clathrin mediated endocytosis are anti-seizure in animal models. RSC Medicinal Chemistry, 14. pp. 1492-1511.

P

Perry, Matthew J., Curic, Mara, Scott, Abigail L., Ritmejeryte, Edita, Rahayu, Dyah U.C., Keller, Paul A., Oelgemöller, Michael, Yeshi, Karma, and Wangchuk, Phurpa (2024) The In Vitro Antioxidant and Anti-Inflammatory Activities of Selected Australian Seagrasses. Life, 14 (6). 710.

Peck, Yoshimi, Pickering, Darren, Mobli, Mehdi, Liddell, Michael J., Wilson, David T, Ruscher, Roland, Ryan, Stephanie, Buitrago, Geraldine, McHugh, Connor, Love, Nicholas C., Pinlac, Theresa, Haertlein, Michael, Kron, Michael A., Loukas, Alex, and Daly, Norelle L. (2024) Solution structure of the N-terminal extension domain of a Schistosoma japonicum asparaginyl-tRNA synthetase. Journal of Biomolecular Structure and Dynamics. (In Press)

Pagnozzi, Alex M., van Eijk, Liza, Pannek, Kerstin, Boyd, Roslyn N., Saha, Susmita, George, Joanne, Bora, Samudragupta, Bradford, Dana Kai, Fahey, Michael, Ditchfield, Michael, Malhotra, Atul, Liley, Helen, Colditz, Paul B., Rose, Stephen, and Fripp, Jurgen (2023) Early brain morphometrics from neonatal MRI predict motor and cognitive outcomes at 2-years corrected age in very preterm infants. NeuroImage, 267. 119815.

Perry, Matthew J., and Wangchuk, Phurpa (2023) The Ethnopharmacology, Phytochemistry and Bioactivities of the Corymbia Genus (Myrtaceae). Plants, 12 (21). 3686.

Phillips, Jennifer, Witt, Susan, Piller, Neil, and Gordon, Susan (2023) Seasonal Variation in Upper Limb Size, Volume, Fluid Distribution, and Lymphedema Diagnosis, Following Breast Cancer Treatment. Lymphatic Research and Biology, 21 (4). pp. 351-358.

Pazoki, Hossein, Mirjalali, Hamed, Niyyati, Maryam, Seyed Tabaei, Seyed Javad, Mosaffa, Nariman, Shahrokh, Shabnam, Asadzadeh Ahdaei, Hamid, Kupz, Andreas, and Zali, Mohammad Reza (2023) Toxoplasma gondii profilin induces NLRP3 activation and IL-1β production/secretion in THP-1 cells. Microbial Pathogenesis, 180. 106120.

Popham, Kelsey, and Kandasamy, Yogavijayan (2023) The impact of smoking and nicotine exposure during pregnancy on fetal nephrogenesis: A systematic review. Journal of Developmental Origins of Health and Disease, 14. pp. 559-569.

Premarathna, Amal D., Tuvikene, Rando, Somasiri, M.N.R., De Silva, M.L.W.P., Adhikari, Ranjith, Ranahewa, T.H., Wijesundara, R.R.M.K.K., Wijesekera, S.K., Wangchuk, Phurpa, Rjabovs, Vitalijs, Jayasooriya, Anura P., and Rajapakse, R.P.V.J. (2023) A novel therapeutic effect of mannitol-rich extract from the brown seaweed Sargassum ilicifolium using in vitro and in vivo models. BMC Complementary Medicine and Therapies, 23. 26.

Pratap, Kunal (2022) Marine algal compounds as novel therapeutics for food allergy. PhD thesis, James Cook University.

Pitaksakulrat, O., Sithithaworn, P., Kopolrat, K.Y., Kiatsopit, N., Saijuntha, W., Andrews, R.H., Petney, T.N., and Blair, D. (2022) Molecular identification of trematode parasites infecting the freshwater snail Bithynia siamensis goniomphalos in Thailand. Journal of Helminthology, 96. e49.

Phie, James, Thanigaimani, Shivshankar, and Golledge, Jonathan (2021) Systematic review and meta-analysis of interventions to slow progression of abdominal aortic aneurysm in mouse models. Arteriosclerosis, Thrombosis and Vascular Biology, 41 (4). pp. 1504-1517.

R

Romo-Rico, Jesus, Bright, Richard, Krishna, Smriti Murali, Vasilev, Krasimir, Golledge, Jonathan, and Jacob, Mohan V. (2023) Antimicrobial graphene-based coatings for biomedical implant applications. Carbon Trends, 12. 100282.

Raza, Ali, Schulz, Benjamin L., Nouwens, Amanda, Naseem, Muhammad Noman, Kamran, Muhammad, Mantilla Valdivieso, Emily F., Kerr, Edward D., Constantinoiu, Constantin, Jonsson, Nicholas N., James, Peter, and Tabor, Ala E. (2023) Application of quantitative proteomics to discover biomarkers for tick resistance in cattle. Frontiers in Immunology, 14. 1091066.

Radford, Holly M., Toft, Casey J., Sorenson, Alanna E., and Schaeffer, Patrick M. (2023) Inhibition of Replication Fork Formation and Progression: Targeting the Replication Initiation and Primosomal Proteins. International Journal of Molecular Sciences, 24 (10). 8802.

Romo Rico, Jesus (2023) Plasma-assisted development of plant-based biomaterials for wound-healing applications. PhD thesis, James Cook University.

Redden, Patricia, Parker, Kaitland, Henderson, Sinead, Fourie, Phillip, Agnew, Linda, Stenos, John, Graves, Stephen, Govan, Brenda, Norton, Robert, and Ketheesan, Natkunam (2023) Q fever - immune responses and novel vaccine strategies. Future Microbiology, 18 (16). pp. 1185-1196.

Rosa, Sergio Barroso, Wilkinson, Matthew, McEwen, Peter, Morse, Levi, Grant, Andrea, Doma, Kenji, Haward, Charles, and Rikard-Bell, Matthew (2023) Skin sensory alteration and kneeling ability following cruciate retaining total knee arthroplasty are not affected by the incision position: A randomised controlled trial of simultaneous bilateral surgery. Journal of Experimental Orthopaedics, 10. 145.

Raghubar, Arti M., Crawford, Joanna, Jones, Kahli, Lam, Pui Y., Andersen, Stacey B., Matigian, Nicholas A., Ng, Monica S.Y., Healy, Helen, Kassianos, Andrew J., and Mallett, Andrew J. (2023) Spatial Transcriptomics in Kidney Tissue. In: Hewitson, Tim D., Toussaint, Nigel D., and Smith, Edward R., (eds.) Kidney Research: Experimental protocols. Methods in Molecular Biology . Springer, New York, NY, USA, pp. 233-282.

Rymer, Tasmin L., and Pillay, Neville (2023) The effects of antibiotics and illness on gut microbial composition in the fawn-footed mosaic-tailed rat (Melomys cervinipes). PLoS ONE, 18. e0281533.

Rasalam, Roy, Rudofsky, Gottfried, Bodholdt, Ulrik, Catarig, Andrea-Mircea, Ekberg, Neda, Erhan, Umut, Liutkus, Joanne, Tariq, Mohd, and Holmes, Patrick (2022) Patients reaching treatment targets with once-weekly semaglutide in real‑world practice: pooled analysis of four SURE studies. In: [Presented at the Australasian Diabetes Congress 2022]. From: Australasian Diabetes Congress 2022, 8-10 August 2022, Brisbane, QLD, Australia.

Ramani, Subha, McKimm, Judy, Findyartini, Ardi, Nadarajah, Vishna Devi, Hays, Richard, Chisolm, Margaret S., Filipe, Helena P., Fornari, Alice, Kachur, Elizabeth K., Kusurkar, Rashmi A., Thampy, Harish, and Wilson, Keith W. (2021) Twelve tips for developing a global community of scholars in health professions education. Medical Teacher, 43 (8). pp. 966-971.

Ryan, Rachael Y.M., Lutzky, Viviana P., Herzig, Volker, Smallwood, Taylor B., Potriquet, Jeremy, Wong, Yide, Masci, Paul, Lavin, Martin F., King, Glenn F., Lopez, J. Alejandro, Ikonomopoulou, Maria P., and Miles, John J. (2020) Venom of the red-bellied black snake Pseudechis porphyriacus shows immunosuppressive potential. Toxins, 12 (11). 674.

S

Saha, Anindo, Bosma, Joeran S, Twilt, Jasper J, van Ginneken, Bram, Bjartell, Anders, Padhani, Anwar R, Bonekamp, David, Villeirs, Geert, Salomon, Georg, Giannarini, Gianluca, Kalpathy-Cramer, Jayashree, Barentsz, Jelle, Maier-Hein, Klaus H, Rusu, Mirabela, Rouvière, Olivier, van den Bergh, Roderick, Panebianco, Valeria, Kasivisvanathan, Veeru, Obuchowski, Nancy A, Yakar, Derya, Elschot, Mattijs, Veltman, Jeroen, Fütterer, Jurgen J, de Rooij, Maarten, Huisman, Henkjan, and PI-CAI consortium (2024) Artificial intelligence and radiologists in prostate cancer detection on MRI (PI-CAI): an international, paired, non-inferiority, confirmatory study. Lancet Oncology. (In Press)

Sarkar, Sujan Kumar, Willson, Annie M.L., and Jordan, Margaret A. (2024) The Plasticity of Immune Cell Response Complicates Dissecting the Underlying Pathology of Multiple Sclerosis. Journal of Immunology Research, 2024. 5383099.

Smith, Justin, Yu, Justin, Gordon, Louisa G., and Chilkuri, Madhavi (2023) Financial Toxicity and Out-of-Pocket Costs for Patients with Head and Neck Cancer. Current Oncology, 30 (5). pp. 4922-4935.

Sidhu, Tejminder S., Jhamb, Shaurya, Welch, Christine, and Whiting, Scott (2023) Minimally invasive management of sleeve gastrectomy collection with a nasobiliary drainage tube. Journal of Surgical Case Reports, 2023 (11). rjad626.

Sadeghi, Mehdi, Karimi, Mohammad Reza, Karim, Amir Hossein, Farshbaf, Nafiseh Ghorbanpour, Barzegar, Abolfazl, and Schmitz, Ulf (2023) Network-Based and Machine-Learning Approaches Identify Diagnostic and Prognostic Models for EMT-Type Gastric Tumors. Genes, 14 (750).

Sayal, Lana, Hamadah, Omar, Almasri, Aroub, Idrees, Majdy, Thomson, Peter, and Kujan, Omar (2023) Saliva-based cell-free DNA and cell-free mitochondrial DNA in head and neck cancers have promising screening and early detection role. Journal of Oral Pathology and Medicine, 52 (1). pp. 29-36.

Shah, Jaynish S., Milevskiy, Michael J.G., Petrova, Veronika, Au, Amy Y.M., Wong, Justin J.L., Visvader, Jane E., Schmitz, Ulf, and Rasko, John E.J. (2022) Towards resolution of the intron retention paradox in breast cancer. Breast Cancer Research, 24. 100.

Sarker, Subir, Raidal, Shane, Helbig, Karla, and Forwood, Jade (2021) Atomic Structure of the World's Smallest Virus-Like Particles: Pleasant Surprises in Clinical Applications. In: The FASEB Journal (35) 00234. From: Experimental Biology 2021 Meeting, 27-30 April 2021, Online.

Sarker, Subir, Hannon, Christabel, Athukorala, Ajani, and Bielefeldt-Ohmann, Helle (2021) Emergence of a novel pathogenic poxvirus infection in the endangered green sea turtle (Chelonia mydas) highlights a key threatening process. Viruses, 13 (2). 219.

Su, Chinh Tran-To, Lua, Wai-Heng, Poh, Jun-Jie, Ling, Wei-Li, Yeo, Joshua-Yi, and Gan, Samuel Ken-En (2021) Molecular insights of nickel binding to therapeutic antibodies as a possible new antibody superantigen. Frontiers in Immunology, 12. 676048.

Sun, Eun Jin, Wankell, Miriam, Palamuthusingam, Pranavan, McFarlane, Craig, and Hebbard, Lionel (2021) Targeting the PI3K/Akt/mTOR pathway in hepatocellular carcinoma. Biomedicines, 9 (11). 1639.

Schmitz, Ulf, Shah, Jaynish S., Dhungel, Bijay P., Monteuuis, Geoffray, Luu, Phuc-Loi, Petrova, Veronika, Metierre, Cynthia, Nair, Shalima S., Bailey, Charles G., Saunders, Verity A., Turhan, Ali G., White, Deborah L., Branford, Susan, Clark, Susan J., Hughes, Timothy P., Wong, Justin J.-L., and Rasko, John E.J. (2020) Widespread aberrant alternative splicing despite molecular remission in chronic myeloid leukaemia patients. Cancers, 12 (12). 3738.

Sathkumara, Harindra Darshana (2020) Mechanisms driving tuberculosis susceptibility and vaccine efficacy in HIV/AIDS and type 2 diabetes. PhD thesis, James Cook University.

Shafee, Thomas, Mitchell, Michela L., and Norton, Raymond S. (2019) Mapping the chemical and sequence space of the ShKT superfamily. Toxicon, 165. pp. 95-102.

Sadeghi, Mehdi, Ranjbar, Bijan, Ganjalikhany, Mohamad Reza, Khan, Faiz M., Schmitz, Ulf, Wolkenhauer, Olaf, and Gupta, Shailendra K. (2016) MicroRNA and transcription factor gene regulatory network analysis reveals key regulatory elements associated with prostate cancer progression. PLoS ONE, 11 (12). e0168760.

Schmitz, Ulf, and Wolkenhauer, Olaf (2016) Systems medicine. Methods in Molecular Biology, 1386 . Springer, New York, USA.

Schultz, Julia, Koczan, Dirk, Schmitz, Ulf, Ibrahim, Saleh M., Pilch, Dominik, Landsberg, Jenny, and Kunz, Manfred (2010) Tumor-promoting role of signal transducer and activator of transcription (Stat)1 in late-stage melanoma growth. Clinical and Experimental Metastasis, 27. pp. 133-140.

T

Thapa, Parbati, KC, Bhuvan, Gyawali, Sudesh, Leong, Siew Lian, Mohamed Ibrahim, Mohamed Izham, and Lee, Shaun Wen Huey (2024) Effectiveness of community pharmacist-led interventions in osteoarthritis pain management: A cluster-randomized trial. Research in Social and Administrative Pharmacy, 20 (2). pp. 149-156.

Tu, Pengjia, Li, Junhuai, Wang, Huaijun, Li, Yuxin, and Xiang, Wei (2023) A Novel Lower-Limb Coordination Assessment Scheme Using Multi-Scale Nonlinear Coupling Characteristics With sEMG. IEEE Transactions on Instrumentation and Measurement, 72. 4002911.

Taylor, Lauren, Wankell, Miriam, Saxena, Pankaj, McFarlane, Craig McFarlane, and Hebbard, Lionel (2021) Cell adhesion an important determinant of myogenesis and satellite cell activity. Biochimica et Biophysica Acta. Molecular Cell Research, 1869 (2). 119170.

U

Uzoechi, Samuel C., Rosa, Bruce A., Singh, Kumar Sachin, Choi, Young Jun, Bracken, Bethany K., Brindley, Paul J., Townsend, R. Reid, Sprung, Robert, Zhan, Bin, Bottazzi, Maria Elena, Hawdon, John M., Wong, Yide, Loukas, Alex, Djuranovic, Sergej, and Mitreva, Makedonka (2023) Excretory/Secretory Proteome of Females and Males of the Hookworm Ancylostoma ceylanicum. Pathogens, 12 (1). 95.

V

Valencia-Hernandez, Ana Maria, Zillinger, Thomas, Ge, Zhengyu, Tan, Peck S., Cozijnsen, Anton, Mcfadden, Geoffrey I., Lahoud, Mireille H., Caminsch, Irina, Barchet, Winfried, Heath, William R., and Fernandez-Ruiz, Daniel (2023) Complexing CpG adjuvants with cationic liposomes enhances vaccine-induced formation of liver TRM cells. Vaccine, 41 (5). pp. 1094-1107.

Valencia-Hernandez, Ana Maria, Ng, Wei Yi, Ghazanfari, Nazanin, Ghilas, Sonia, de Menezes, Maria N., Holz, Lauren E., Huang, Cheng, English, Kieran, Nuang, Myo, Tan, Peck Szee, Tullett, Kirsteen M., Steiner, Thiago M., Enders, Matthias H., Beattie, Lynette, Chua, Yu Cheng, Jones, Claerwen M., Cozijnsen, Anton, Mollard, Vanessa, Cai, Yeping, Bowen, David G., Purcell, Anthony W., La Gruta, Nicole L., Villadangos, Jose A., De Koning-ward, Tania, Barry, Alyssa E., Barchet, Winfried, Cockburn, Ian A., Mcfadden, Geoffrey I., Gras, Stephanie, Lahoud, Mireille H., Bertolino, Patrick, Schittenhelm, Ralf B., Caminschi, Irina, Heath, William R., and Fernandez-Ruiz, Daniel (2020) A Natural Peptide Antigen within the Plasmodium Ribosomal Protein RPL6 Confers Liver TRM Cell-Mediated Immunity against Malaria in Mice. Cell Host & Microbe, 27 (6). 950-962.e7.

Vera, Julio, Schmitz, Ulf, Lai, Xin, Engelmann, David, Khan, Faiz M., Wolkenhauer, Olaf, and Pützer, Brigitte M. (2013) Kinetic modeling-based detection of genetic signatures that provide chemoresistance via the E2F1-p73/DNp73-miR-205 network. Cancer research, 73 (12). pp. 3511-3524.

W

Wang, Hao, Ahn, Euijoon, and Kim, Jinman (2024) A multi-resolution self-supervised learning framework for semantic segmentation in histopathology. Pattern Recognition. 110621. (In Press)

Weppler, Alison M., Da Meda, Laetitia, Pires da Silva, Ines, Xu, Wen, Grignani, Giovanni, Menzies, Alexander M., Carlino, Matteo S., Long, Georgina V., Lo, Serigne N., Nordman, Ina, Steer, Christopher B., Lyle, Megan, Trojaniello, Claudia, Ascierto, Paolo A., Lebbe, Celeste, and Sandhu, Shahneen (2023) Durability of response to immune checkpoint inhibitors in metastatic Merkel cell carcinoma after treatment cessation. European Journal of Cancer, 183. pp. 109-118.

Wangchuk, Phurpa, Yeshi, Karma, and Loukas, Alex (2023) Metabolomics and lipidomics studies of parasitic helminths: molecular diversity and identification levels achieved by using different characterisation tools. Metabolomics, 19 (63).

Wangchuk, Phurpa, Samten, and Jamtsho, Tenzin (2023) Phytopharmaceutical properties and quality assessment of two Himalayan medicinal plants, Meconopsis horridula and Meconopsis simplicifolia. Journal of Herbal Medicine, 38. 100628.

White, Ruby, Sotillo, Javier, Ancarola, María Eugenia, Borup, Anne, Boysen, Anders Toftegaard, Brindley, Paul J., Buzás, Edit I., Cavallero, Serena, Chaiyadet, Sujittra, Chalmers, Iain W., Cucher, Marcela A., Dagenais, Maude, Davis, Chelsea N., Devaney, Eileen, Duque-Correa, Maria A., Eichenberger, Ramon Marc, Fontenla, Santiago, Gasan, Thomas A., Hokke, Cornelis H., Kosanovic, Maja, Kuipers, Marije E., Laha, Thewarach, Loukas, Alex, Maizels, Rick M., Marcilla, Antonio, Mazanec, Hynek, Morphew, Russell M., Neophytou, Kyriaki, Nguyen, Linh Thuy, Nolte-‘t Hoen, Esther, Povelones, Michael, Robinson, Mark W., Rojas, Alicia, Schabussova, Irma, Smits, Hermelijn H., Sungpradit, Sivapong, Tritten, Lucienne, Whitehead, Bradley, Zakeri, Amin, Nejsum, Peter, Buck, Amy H., and Hoffmann, Karl F. (2023) Special considerations for studies of extracellular vesicles from parasitic helminths: A community-led roadmap to increase rigour and reproducibility. Journal of Extracellular Vesicles, 12 (1). 12298.

Wong, Alex C.H., Wong, Justin J.-L., Rasko, John E.J., and Schmitz, Ulf (2023) SpliceWiz: Interactive analysis and visualization of alternative splicing in R. Briefings in Bioinformatics, 25 (1).

Wangchuk, Phurpa, Anderson, Dovile, Yeshi, Karma, and Loukas, Alex (2021) Identification of small molecules of the infective stage of human hookworm using LCMS-based metabolomics and lipidomics protocols. ACS Infectious Diseases, 7. pp. 3264-3276.

Watkins, Thomas S., and Miles, John J. (2021) The human T-cell receptor repertoire in health and disease and potential for omics integration. Immunology and Cell Biology, 99 (2). pp. 135-145.

Watkins, Thomas (2020) High-throughput and high-definition analysis of human T cell repertoires in health and disease. PhD thesis, James Cook University.

Weerakoon, Harshi, Potriquet, Jeremy, Shah, Alok K., Reed, Sarah, Jayakody, Buddhika, Kapil, Charu, Midha, Mukul K., Moritz, Robert L., Lepletier, Ailin, Mulvenna, Jason, Miles, John J., and Hill, Michelle M. (2020) A primary human T-cell spectral library to facilitate large scale quantitative T-cell proteomics. Scientific Data, 7 (1). 412.

Y

Yuan, Yuan, Ahn, Euijoon, Feng, Dagan, Khadra, Mohamad, and Kim, Jinman (2023) SSPT-bpMRI: A Self-supervised Pre-training Scheme for Improving Prostate Cancer Detection and Diagnosis in Bi-parametric MRI*. In: Proceedings of the 45th Auunual International Conference of the Engineering in Medicine & Biology Society. From: EMBC 2023: 45th Annual International Conference of the Engineering in Medicine & Biology Society, 24-27 July 2023, Sydney, NSW, Australia.

Yakou, Marina H., Ghilas, Sonia, Tran, Kelly, Liao, Yang, Afshar-Sterle, Shoukat, Kumari, Anita, Schmid, Kevin, Dijkstra, Christine, Inguanti, Chantelle, Ostrouska, Simone, Wilcox, Jordan, Smith, Maxine, Parathan, Pavitha, Allam, Amr, Xue, Hai Hui, Belz, Gabrielle T., Mariadason, John M., Behren, Andreas, Drummond, Grant R., Ruscher, Roland, Williams, David S., Pal, Bhupinder, Shi, Wei, Ernst, Matthias, Raghu, Dinesh, and Mielke, Lisa A. (2023) TCF-1 limits intraepithelial lymphocyte antitumor immunity in colorectal carcinoma. Science Immunology, 8 (88). eadf2163.

Yeshi, Karma, Ruscher, Roland, Loukas, Alex, and Wangchuk, Phurpa (2022) Immunomodulatory and biological properties of helminth-derived small molecules: Potential applications in diagnostics and therapeutics. Frontiers in Parasitology, 1. 984152.

Yeshi, Karma, and Wangchuk, Phurpa (2021) Essential oils and their bioactive molecules in health care. In: Mandal, Subhash C., Nayak, Amit Kumar, and Dhara, Amal Kumar, (eds.) Herbal Biomolecules in Health Care Applications. London, UK, Academic Press, United Kingdom, pp. 215-237.

Z

Zhou, Yusheng, Li, Hao, Liu, Jianan, Kong, Zhengmin, Huang, Tao, Ahn, Euijoon, Lv, Zhihan, Kim, Jinman, and Feng, David Dagan (2024) Explicit Abnormality Extraction for Unsupervised Motion Artifact Reduction in Magnetic Resonance Imaging. IEEE Journal of Biomedical and Health Informatics. (In Press)

Zhou, Yusheng, Kong, Zhengmin, Huang, Tao, Ahn, Euijoon, Li, Hao, and Ding, Li (2024) WaveletDFDS-Net: A Dual Forward Denoising Stream Network for Low-Dose CT Noise Reduction. Electronics, 13. 1906.

Zhou, Shijia, Sridar, Pradeeba, Kennedy, Narelle June, Quinton, Anne, Ahn, Euijoon, Nanan, Ralph, and Kim, Jinman (2023) A Deep-Learning Enabled Automatic Fetal Thalamus Diameter Measurement Algorithm. In: Proceedings of the 45th Auunual International Conference of the Engineering in Medicine & Biology Society. From: EMBC 2023: 45th Annual International Conference of the Engineering in Medicine & Biology Society, 24-27 July 2023, Sydney, NSW, Australia.

Zhang, Tim, Rahimi Azghadi, Mostafa, Lammie, Corey, Amirsoleimani, Amirali, and Genov, Roman (2023) Spike sorting algorithms and their efficient hardware implementation: A comprehensive survey. Journal of Neural Engineering, 20 (2). 021001.

Zhao, Guangzu, Azuar, Armira, Toth, Istvan, and Skwarczynski, Mariusz (2021) A potent vaccine delivery system. Bio-protocol, 11 (7). e3973.