Jordan, Margaret A., Gresle, Melissa M., Gemiarto, Adrian T., Stanley, Dragana, Smith, Letitia D., Laverick, Louise, Spelman, Tim, Stankovich, Jim, Willson, Annie M.L., Dinh, Xuyen T., Johnson, Laura, Robertson, Kylie, Reid, Christopher A.R., Field, Judith, Butzkueven, Helmut, and Baxter, Alan G. (2024) Transcriptional network analysis of peripheral blood leukocyte subsets in multiple sclerosis identifies a pathogenic role for a cytotoxicity‐associated gene network in myeloid cells. Immunology & Cell Biology. (In Press)

Lelliot, Emily J., Ramsbottom, Kelly M., Dowling, Mark R., Shewbrey, Carolyn, Noori, Tahereh, Kearney, Conor J., Michie, Jessica, Parish, Ian A., Jordan, Margaret A., Baxter, Alan G., Young, Niel D., Brennan, Amelia J., and Oliaro, Jane (2023) NKG7 Enhances CD8+ T cell synapse efficiency to limit inflammation. In: Baldari, Cosima T., Valitutti, Salvatore, and Dustin, Michael L, (eds.) Mechanisms of Lymphocyte Mediated Cytotoxicity in Health and Disease. Frontiers, Lausanne, Switzerland, pp. 156-170.

Lelliott, Emily, Ramsbottom, Kelly, Dowling, Mark, Shembrey, Carolyn, Noori, Tahereh, Kearney, Conor, Michie, Jessica, Parish, Ian, Jordan, Margaret, Baxter, Alan, Young, Niel, Brennan, Amelia, and Oliaro, Jane (2022) NKG7 enhances CD8+ T cell synapse efficiency to limit inflammation. Frontiers in Immunology, 13. 931630.

Yeh, W., Gresle, M., Lea, R., Jokubaitis, J., van der Walt, A., Jordan, M., Baxter, A., Smith, L., and Butzkueven, H. (2021) Differentially regulated pathways by endogenous vitamin D in multiple sclerosis identified by transcriptomics of immune cell subsets. Multiple Sclerosis Journal, 27 (2S). P333. p. 343.

Dinh, Xuyen T., Stanley, Dragana, Smith, Letitia D., Moreau, Morgane, Berzins, Stuart P., Gemiarto, Adrian, Baxter, Alan G., and Jordan, Margaret A. (2021) Modulation of TCR signalling components occurs prior to positive selection and lineage commitment in iNKT cells. Scientific Reports, 11. 23650.

Jordan, Margaret A., and Baxter, Alan G. (2020) Genetic predisposition, humans. In: Rose, Noel R., and Mackay, Ian R., (eds.) The Autoimmune Diseases. Elsevier, Boston,MA, USA, pp. 383-418.

Gresle, Melissa M., Jordan, Margaret A., Stankovich, Jim, Spelman, Tim, Johnson, Laura J., Laverick, Louise, Hamlett, Alison, Smith, Letitia D., Jokubaitis, Vilija G., Baker, Josephine, Haartsen, Jodi, Taylor, Bruce, Charlesworth, Jac, Bahlo, Melanie, Speed, Terence P., Brown, Matthew A., Field, Judith, Baxter, Alan G., and Butzkueven, Helmut (2020) Multiple Sclerosis risk variants regulate gene expression in innate and adaptive immune cells. Life Science Alliance, 3 (7). e202000650.

Ng, Susanna S., Rivera, Fabian De Labastida, Yan, Juming, Corvino, Dillon, Das, Indrajit, Zhang, Ping, Kuns, Rachel, Chauhan, Shashi Bhushan, Hou, Jiajie, Li, Xian-Yang, Frame, Teija C.M., McEnroe, Benjamin A., Moore, Eilish, Na, Jinrui, Engel, Jessica A., Soon, Megan S. F., Singh, Bhawana, Kueh, Andrew J., Herold, Marco J., de Oca, Marcela Montes, Singh, Siddharth Sankar, Bunn, Patrick T., Aguilera, Amy Roman, Casey, Mika, Braun, Matthias, Ghazanfari, Nazanin, Wani, Shivangi, Wang, Yulin, Amante, Fiona, Edwards, Chelsea L., Haque, Ashraful, Dougall, William C., Singh, Om Prakash, Baxter, Alan G., Teng, Michele W.L., Loukas, Alex, Daly, Norelle L., Cloonan, Nicole, Degli-esposti, Mariapia, Uzonna, Jude, Heath, William R., Bald, Tobias, Tey, Siok-Keen, Nakamura, Kyohei, Hill, Geoffrey R., Kumar, Rajiv, Sundar, Shyam, Smyth, Mark J, and Engwerda, Christian R. (2020) The NK cell granule protein NKG7 regulates cytotoxic granule exocytosis and inflammation. Nature Immunology, 21. pp. 1205-1217.

Too, Lay Khoon, Yau, Belinda, Baxter, Alan G., McGregor, Iain S., and Hunt, Nicholas H. (2019) Double deficiency of toll-like receptors 2 and 4 alters long-term neurological sequelae in mice cured of pneumococcal meningitis. Scientific Reports, 9. 16189.

Patsopoulos, Nikolas A., Baranzini, Sergio E., Santaniello, Adams, Shoostari, Parisa, Cotsapas, Chris, Wong, Garrett, Beecham, Ashley H., James, Tojo, Replogle, Joseph, Vlachos, Ioannis S., McCabe, Cristin, Pers, Tune H., Brandes, Aaron, White, Charles, Keenan, Brendan, Cimpean, Maria, Winn, Phoebe, Panteliadis, Ioannis-Pavlos, Robbins, Allison, Andlauer, Till F. M., Zarzycki, Onigiusz, Dubois, Benedicte, Goris, An, Sondergaard, Helle Bach, Sellebjerg, Finn, Sorensen, Per Soelberg, Ullum, Henrik, Thorner, Lise Wegner, Saarela, Janna, Cournu-Rebeix, Isabelle, Damotte, Vincent, Fontaine, Bertrand, Guillot-Noel, Lena, Lathrop, Mark, Vukusic, Sandra, Berthele, Achim, Pongratz, Viola, Pongratz, Viola, Gasperi, Christiane, Graetz, Christiane, Grummel, Verena, Hemmer, Bernhard, Hoshi, Muni, Knier, Benjamin, Korn, Thomas, Lill, Christina M., Luessi, Felix, Muehlau, Mark, Zipp, Frauke, Dardiotis, Efthimios, Agliardi, Cristina, Amoroso, Antonio, Barizzone, Nadia, Benedetti, Maria D., Bernardinelli, Luisa, Cavalla, Paola, Clarelli, Ferdinando, Comi, Giancarlo, Cusi, Daniele, Esposito, Federica, Ferre, Laura, Galimberti, Daniela, Guaschino, Clara, Leone, Maurizio A., Martinelli, Vittorio, Moiola, Lucia, Salvetti, Marco, Sorosina, Melissa, Vecchio, Domizia, Zauli, Andrea, Santoro, Silvia, Mancini, Nicasio, Zuccala, Miriam, Mescheriakova, Julia, van Duijn, Cornelia, Bos, Steffan D., Celius, Elisabeth G., Spurkland, Anne, Comabella, Manuel, Montalban, Xavier, Alfredsson, Lars, Bomfim, Izaura L., Gomez-Cabrero, David, Hillert, Jan, Jagodic, Maja, Linden, Magdalena, Piehl, Fredrik, Jelcic, Ilijas, Martin, Roland, Sospedra, Mirela, Baker, Amie, Ban, Maria, Hawkins, Clive, Hysi, Pirro, Kalra, Seema, Karpe, Fredrik, Khadake, Jyoti, Lachance, Genevieve, Molyneux, Paul, Neville, Matthew, Thorpe, John, Bradshaw, Elizabeth, Caillier, Stacy J., Calabresi, Peter, Cree, Bruce A. C., Cross, Anne, Davis, Mary, de Bakker, Paul W. I., Delgado, Silvia, Dembele, Marieme, Edwards, Keith, Fitzgerald, Kate, Frohlich, Irene Y., Gourraud, Pierre-Antoine, Haines, Jonathan L., Hakonarson, Hakon, Kimbrough, Dorlan, Isobe, Noriko, Konidari, Ioanna, Lathi, Ellen, Lee, Michelle H., Li, Taibo, An, David, Zimmer, Andrew, Madireddy, Lohith, Manrique, Clara P., Mitrovic, Mitja, Olah, Marta, Patrick, Ellis, Pericak-Vance, Margaret A., Piccio, Laura, Schaefer, Cathy, Weiner, Howard, Lage, Kasper, Scott, Rodney J., Lechner-Scott, Jeannette, Leal, Rod, Moscato, Pablo, Booth, David R., Stewart, Graeme J., Vucic, Stephen, Pame, Grant, Bametto, Michael, Mason, Deborah, GriffithS, Lyn, Broadley, Simon, Tajouri, Lotti, Baxter, Alan, Slee, Mark, Taylor, Bruce V., Charlesworth, Jac, Kilpatrick, Trevor J., Rubio, Justin, Jokubaitis, Vilija, Wiley, James, Butzkueven, Helmut, Leslie, Stephen, Motyer, Allan, Stankovich, Jim, Carroll, William M., Kermode, Allan G., Edrin, Marzena, Barclay, Murray, Peyrin-Biroulet, Laurent, Chamaillard, Mathias, Colombe, Jean-Frederick, Cottone, Mario, Croft, Anthony, D'Inca, Renata, Halfvarson, Jonas, Hanigan, Katherine, Henderson, Paul, Hugot, Jean-Pierre, Karban, Amir, Kennedy, Nicholas A., Khan, Mohammed Azam, Lemann, Marc, Levine, Arie, Massey, Dunecan, Milla, Monica, Motoey, Grant W., Ng, Sok Meng Evelyn, Oikonomnou, Joannis, Peeters, Harald, Proctor, Deborah D., Rahier, Jean-Francois, Roberts, Rebecca, Rutgeerts, Paul, Seibold, Frank, Stronati, Laura, Taylor, Kirstin M., Torkvist, Leif, Ublick, Kullak, Van Limbergen, Johan, Van Gossum, Andre, Vatn, Morten H., Zhang, Hu, Zhang, Wei, Donnelly, Peter, Barroso, Ines, Blackwe, Jenefer M., Bramon, Elvira, Brown, Matthew A., Casas, Juan P., Corvin, Aiden, Deloukas, Panos, Duncanson, Audrey, Jankowski, Janusz, Markus, Hugh S., Mathew, Christopher G., Palmer, Colin N. A., Plomin, Robert, Rautanen, Anna, Sawcer, Stephen J., Trembath, Richard C., Viswanathan, Ananth C., Wood, Nicholas W., Spencer, Chris C. A., Band, Gavin, Bellenguez, Celine, Freeman, Colin, Hellenthal, Garrett, Giannoulatou, Eleni, Pirinen, Matti, Pearson, Richard, Strange, Amy, Sul, Zhan, Vukcevic, Damj An, Donnelly, Peter, Langford, Cordelia, Hunt, Sarah E., Edkins, Sarah, Gwilliam, Rhian, Blackburn, Hannah, Bumpstead, Suzannah J., Dronov, Serge, Gillman, Matthew, Gray, Emma, Hammond, Naomi, Jayakumar, Alagurevathi, McCann, Owen T., Liddle, Jennifer, Potter, Simon C., Ravindrarajah, Radhi, Ricketts, Michelle, Waller, Matthew, Weston, Paul, Widaa, Sara, Whittaker, Pamela, Barroso, Ines, Deloukas, Panos, Mathew, Christopher G., Blackwe, Jenefer M., UNSPECIFIED, Corvin, Aiden, Spencer, Chris C. A., Compston, Alastair, Hafler, David, Harbo, Hanne F., Hauser, Stephen L., D'Alfonso, Sandra, Hadjigeorgiou, Georgios, Barcellos, Lisa F., Booth, David, Hintzen, Rogier, Kockum, Ingrid, Martinelli-Boneschi, Filippo, McCauley, Jacob L., Oksenberg, Jorge R., Oturai, Annette, Ivinson, Adrian J., Olsson, Tomas, and De Jager, Philip L. (2019) Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility. Science, 365 (6460). eaav7188.

Wiede, Florian, Brodnicki, Thomas C., Goh, Pei Kee, Leong, Yew A., Jones, Gareth W., Yu, Di, Baxter, Alan G., Jones, Simon A., Kay, Thomas W.H., and Tiganis, Tony (2019) T-Cell-specific PTPN2 deficiency in NOD mice accelerates the development of type 1 diabetes and autoimmune comorbidities. Diabetes, 68 (6). pp. 1251-1266.

Kling, Jessica C., Jordan, Margaret A., Pitt, Lauren A., Meiners, Jana, Thanh-Tran, Thao, Son Tran, Le, Nguyen, T.K., Mittal, Deepak, Villani, Rehan, Steptoe, Raymond J., Khosrotehrani, Kiarash, Berzins, Stuart P., Baxter, Alan G., Godfrey, Dale I., Blumenthal, Antje, and UNSPECIFIED (2018) Temporal regulation of natural killer T cell interferon gamma responses by β-catenin-dependent and -independent Wnt signaling. Frontiers in Immunology, 9. 483.

Schultz, Thomas E., Wiesmueller, Karl-Heinz, Lucas, Megan, Dobos, Karen M., Baxter, Alan G., and Blumenthal, Antje (2018) The N-terminal peptide moiety of the Mycobacterium tuberculosis 19 kDa lipoprotein harbors RP105-agonistic properties. Journal of Leukocyte Biology, 103 (2). pp. 311-319.

Zeng, Bijun, Middelberg, Anton P.J., Gemiarto, Adrian, Macdonald, Kelli, Baxter, Alan G., Talekar, Meghna, Moi, Davide, Tullett, Kirsteen M., Caminschi, Irina, Lahoud, Mireille H., Mazzieri, Roberta, Dolcetti, Riccardo, and Thomas, Ranjeny (2018) Self-adjuvanting nanoemulsion targeting dendritic cell receptor Clec9A enables antigen-specific immunotherapy. Journal of Clinical Investigation, 128 (5). pp. 1971-1984.

Modhiran, Naphak, Watterson, Daniel, Blumenthal, Antje, Baxter, Alan G., Young, Paul R., and Stacey, Katryn J. (2017) Dengue virus NS1 protein activates immune cells via TLR4 but not TLR2 or TLR6. Immunology and Cell Biology, 95. pp. 491-495.

Mariño, Eliana, Richards, James L., McLeod, Keiran H., Stanley, Dragana, Yap, Yu Anne, Knight, Jacinta, Mckenzie, Craig, Kranich, Jan, Oliveira, Ana Carolina, Rossello, Fernando J., Krishnamurthy, Balasubramanian, Nefzger, Christian M., Macia, Lawrence, Thorburn, Alison, Baxter, Alan G., Morohan, Grant, Wong, Lee H., Polo, Jose M., Moore, Robert J., Lockett, Trevor J., Clarke, Julie M., Topping, David L., Harrison, Leonard C., and Mackay, Charles R. (2017) Gut microbial metabolites limit the frequency of autoimmune T cells and protect against type 1 diabetes. Nature Immunology, 18. pp. 552-562.

Field, J., Fox, A., Jordan, M.A., Baxter, A.G., Spelman, T., Gresle, M., Butzkueven, H., Kilpatrick, T.J., and Rubio, J.P. (2017) Interleukin-2 receptor-α proximal promoter hypomethylation is associated with multiple sclerosis. Genes and Immunity, 18. pp. 59-66.

Too, Lay Khoon, McGregor, Iain S., Baxter, Alan G., and Hunt, Nicholas H. (2016) Altered behaviour and cognitive function following combined deletion of Toll-like receptors 2 and 4 in mice. Behavioural Brain Research, 303. 1-8.

Binder, Michele D., Fox, Andrew D., Merlo, Daniel, Johnson, Laura J., Giuffrida, Lauren, Calvert, Sarah E., Akkermann, Rainer, Ma, Gerry Z.M., Perera, Ashwyn A., Gresle, Melissa M., Laverick, Louise, Foo, Grace, Fabis-Pedrini, Marzena J., Spelman, Timothy, Jordan, Margaret A., Baxter, Alan G., Foote, Simon, Butzkueven, Helmut, Kilpatrick, Trevor J., and Field, Judith (2016) Common and low Frequency variants in MERTK are independently associated with multiple sclerosis susceptibility with discordant association dependent upon HLA-DRB1*15:01 status. PLoS Genetics, 12 (3). e1005853. pp. 1-25.

Baxter, A.G., Gemiarto, A., Oliaro, J., Dinh, T.X., Smith, L., Godfrey, D.I., and Jordan, M.A. (2016) Role of killer-associated protein NKG7 in NK and NKT cells. European Journal of Immunology, 46 (S1). p. 181.

Jordan, M.A., Gresle, M., Laverick, L., Stanley, D., Smith, L., Spelman, T., Field, J., Johnson, L., Butzkueven, H., and Baxter, A.G. (2016) Unravelling the multiple sclerosis complex disease trait through an immune transcriptional regulatory network approach. European Journal of Immunology, 46 (S1). 915. p. 921.

Jordan, M.A., Stanley, D., Moore, R., Crowley, B., and Baxter, A.G. (2016) The effect of microbiome/Toll-like receptor interactions on susceptibility to type 1 diabetes. European Journal of Immunology, 46 (S1). 3371. pp. 292-293.

Johnson, Linda K., Widi, Antin Y.N., Rowarth, Serrin, and Baxter, Alan G. (2015) Abdominal distension and Escherichia coli peritonitis in mice lacking myeloid differentiation factor 88. Comparative medicine, 65 (2). pp. 123-126.

Field, Judith, Merlo, Daniel, Johnson, Laura, Giuffrida, Lauren, Perera, Ashwyn D., Calvert, Sarah, Akkermann, Rainer, Ma, Gerry, ANZgene Consortium, Gresle, Melissa, Laverick, Louise, Foo, Grace, Spelman, Tim, Jordan, Margaret, Baxter, Alan, Butzkueven, Helmut, Kilpatrick, Trevor, and Binder, Michele D. (2015) Low and moderate frequency variants in MERTK are independently associated with Multiple Sclerosis susceptibility with discordant association dependent upon HLA-DRB1*1501 status. Multiple Sclerosis Journal, 21 (14). p. 29.

Gresle, Melissa, Jordan, Margaret, Spelman, Tim, Stankovich, Jim, Johnson, Laura, Laverick, Louise, Hamlett, Alison, Baxter, Alan, Butzkeuven, Helmut, and Field, Judith (2015) Multiple Sclerosis risk SNPs modify gene expression in immune cells. Multiple Sclerosis Journal, 21 (14). p. 3.

Baxter, Alan G, and Hodgkin, Philip D. (2015) No luck replicating the immune response in twins. Genome Medicine, 7. 29. pp. 1-2.

Gu, Ben J., Field, Judith, Dutertre, Sébastien, Ou, Amber, Kilpatrick, Trevor J., Lechner-Scott, Jeannette, Scott, Rodney, Lea, Rodney, Taylor, Bruce V., Stankovich, Jim, Butzkueven, Helmut, Gresle, Melissa, Laws, Simon M., Petrou, Steven, Hoffjan, Sabine, Akkad, Denis A., Graham, Colin A., Hawkins, Stanley, Bedri, Sahl Khalid, Glaser, Anna, Hillert, Jan, Matute, Carlos, Antiguedad, Alfredo, Wiley, James S., and ANZgene Consortium inlcuding Alan G. Baxter (2015) A rare P2X7 variant Arg307Gln with absent pore formation function protects against neuroinflammation in multiple sclerosis. Human Molecular Genetics, 24 (19). pp. 5644-5654.

Gresle, Melissa M., Schulz, Katrin, Jonas, Anna, Perreau, Victoria M., Cipriani, Tania, Baxter, Alan G., Miranda-Hernandez, Socorro, Field, Judith, Jokubaitis, Vilija G., Cherny, Robert, Volitakis, Irene, David, Samuel, Kilpatrick, Trevor J., and Butzkueven, Helmut (2014) Ceruloplasmin gene-deficient mice with experimental autoimmune encephalomyelitis show attenuated early disease evolution. Journal of Neuroscience Research, 92 (6). pp. 732-742.

Quah, Hong Sheng, Miranda-Hernandez, Socorro, Khoo, Aimee, Harding, Ashley, Fynch, Stacey, Elkerbout, Lorraine, Brodnicki, Thomas C., Baxter, Alan G., Kay, Thomas W.H., Thomas, Helen E., and Graham, Kate L. (2014) Deficiency in type I interferon signaling prevents the early interferon–induced gene signature in pancreatic islets but not type 1 diabetes in NOD mice. Diabetes, 63 (3). pp. 1032-1040.

Shahijanian, Fernando, Parnell, Grant P., McKay, Fiona C., Gatt, Prudence N., Shojoei, Maryam, O'Connor, Kate S., Schibeci, Stephen D., Brilot, Fabienne, Liddle, Christopher, Batten, Marcel, Baxter, Alan, Kermode, Allan, Carrol, William, Butzkueven, Helmut, Vucic, Steve, Wiley, James, Field, Judith, Tajouri, Lotti, Griffiths, Lyn, Barnett, Michael, Scott, Rodney, Lechner-Scott, Jeannette, Moscato, Pablo, Broadley, Simon, Slee, Mark, Kilpatrick, Trevor, Taylor, Bruce, Charlesworth, Jac, Brown, Matt, Mason, Deborah, Graeme, Stewart J., and Booth, David R. (2014) The CYP27B1 variant associated with an increased risk of autoimmune disease is underexpressed in tolerizing dendritic cells. Human Molecular Genetics, 23 (6). pp. 1425-1434.

Jordan, Margaret A., Field, Judith, Butzkueven, Helmut, and Baxter, Alan G. (2014) Genetic predisposition, humans. In: Rose, Noel R., and Mackay, Ian R., (eds.) The Autoimmune Diseases. Elsevier, Boston, MA, USA, pp. 341-364.

Baxter, Alan G., and Jordan, Margaret A. (2013) Plasticity is the differentiated state of CD4 T cells. Cellular & Molecular Immunology, 10 (5). pp. 375-378.

Miranda-Hernandez, Socorro, and Baxter, Alan (2013) Role of toll-like receptors in multiple sclerosis. American Journal of Clinical and Experimental Immunology, 2 (1). pp. 75-93.

Jordan, Margaret A., Field, Judith, Foo, Grace, Johnson, Laura, Laverick, Louise, Gresle, Melissa, Spelman, Tim, Stankovich, Jim, Butzhueven, Helmut, and Baxter, Alan G. (2013) Causes of Multiple Sclerosis: a functional genomics approach. In: [Presented at] 15th International Congress of Immunology. p. 228. From: 15th International Congress of Immunology (ICI), 22-27 August 2013, Milan, Italy.

Lin, Rui, Charlesworth, Jac, Stankovich, Jim, Perreau, Victoria M., Brown, Matthew A., ANZGene Consortium, and Taylor, Bruce V. (2013) Identity-by-descent mapping to detect rare variants conferring susceptibility to multiple sclerosis. PLoS ONE, 8 (3). e56379. e56379.

Cortes, Adrian, Field, Judith, Glazov, Evgeny A., Hadler, Johanna, ANZgene Consortium, Stankovich, Jim, and Brown, Matthew A. (2013) Resequencing and fine-mapping of the chromosome 12q13-14 locus associated with multiple sclerosis refines the number of implicated genes. Human Molecular Genetics, 22 (11). pp. 2283-2292.

Godfrey, Dale I., Uldrich, Adam P., and Baxter, Alan G. (2012) NKT cells-an early warning system for HBV infection. Nature Medicine, 18 (7). pp. 1014-1016.

Baxter, Alan G., and Jordan, Margaret A. (2012) From markers to molecular mechanisms: type 1 diabetes in the post-GWAS era. Review of Diabetic Studies, 9 (4). pp. 201-223.

Dickgreber, Nina, Farrand, Kathryn J., van Panhuys, Nicholas, Knight, Deborah A., McKee, Sara J., Chong, Mei L., Miranda-Hernandez, Socorro, Baxter, Alan G., Locksley, Richard M., Le Gros, Graham, and Hermans, Ian F. (2012) Immature murine NKT cells pass through a stage of developmentally programmed innate IL-4 secretion. Journal of Leukocyte Biology, 92 (5). pp. 999-1009.

Jordan, Margaret A., Fletcher, Julie M., Jose, Roby, Chowdhury, Shahead, Gerlach, Nicole, Allison, Janette, and Baxter, Alan G. (2011) Role of SLAM in NKT cell development revealed by transgenic complementation in NOD mice. Journal of Immunology, 186 (7). pp. 3953-3965.

Berzins, Stuart P., Smyth, Mark J., and Baxter, Alan G. (2011) Presumed guilty: natural killer T cell defects and human disease. Nature Reviews Immunology, 11 (2). pp. 131-142.

Miranda-Hernandez, Socorro, Gerlach, Nicole, Fletcher, Julie M., Biros, Erik, Mack, Matthias , Körner, Heinrich, and Baxter, Alan G. (2011) Role for MyD88, TLR2 and TLR9 but not TLR1, TLR4 or TLR6 in experimental autoimmune encephalomyelitis. Journal of Immunology, 187 (2). pp. 791-804.

Baune, Bernhard T., Dannlowski, Udo, Domschke, Katharina, Janssen, Debbie G.A., Jordan, Margaret A., Ohmann, Patricia, Bauer, Jochen, Biros, Erik, Arolt, Volker, Kugel, Harald, Baxter, Alan G., and Suslow, Thomas (2010) The interleukin 1 beta (IL1B) gene is associated with failure to achieve remission and impaired emotion processing in major depression. Biological Psychiatry, 67 (6). pp. 543-549.

Godfrey, Dale I., Stankovic, Sanda, and Baxter, Alan G. (2010) Raising the NKT cell family. Nature Immunology, 11 (3). pp. 197-206.

Fletcher, Marie T., and Baxter, Alan G. (2009) Clinical application of NKT cell biology in type I (autoimmune) diabetes mellitus. Immunology and Cell Biology, 87 (4). pp. 315-323.

Jordan, Margaret A., Poulton, Lynn D., Fletcher, Julie M., and Baxter, Alan G. (2009) Allelic variation of Ets1 does not contribute to NK and NKT cell deficiencies in type 1 diabetes susceptible NOD mice. The Review of Diabetic Studies, 6 (2). pp. 104-116.

Godfrey, Dale I., Stankovic, Sanda, and Baxter, Alan G. (2009) Developing NKT cells need their calcium. Nature Immunology, 10. pp. 231-233.

Jordan, M.A., Biros, E., van Driel, I.R., Ang, K.D., and Baxter, A.G. (2009) Micoarray analysis to identify gastritis susceptibility genes on chromosome 4. In: Proceedings of the 39th Annual Meeting of the Australasian Society for Immunology 2009. pp. 235-236. From: 39th Annual Meeting of the Australasian Society for Immunology 2009, 6-10 December 2009, Gold Coast, QLD, Australia.

Shahead, C., Gerlach, N., Jose, R., and Baxter, A. (2009) The role of TOLL-like receptors and the interactions between genetic and environmental risk factors in type 1 diabetes. In: Proceedings of the 39th Annual meeting of Australasian Society for Immunology 2009. From: 39th Annual Meeting of the Australasian Society for Immunology 2009, 6-10 December 2009, Broadbeach, QLD, Australia.

Jordan, Margaret A., and Baxter, Alan G. (2008) The genetics of immunoregulatory T cells. Journal of Autoimmunity, 31 (3). pp. 237-244.

Fletcher, Julie M., Jordan, Margaret A., Snelgrove, Sarah L., Slattery, Robyn M., Dufour, Francois D., Kyparissoudis, Konstantinos, Besra, Gurdyal S., Godfrey, Dale I., and Baxter, Alan G. (2008) Congenic analysis of the NKT cell control gene Nkt2 implicates the peroxisomal protein Pxmp41. Journal of Immunology, 181 (5). pp. 3400-3412.

Jordan, Margaret A., and Baxter, Alan G. (2008) Quantitative and qualitative approaches to GOD: the first 10 years of the clonal selection theory. Immunology and Cell Biology, 86 (1). pp. 72-79.

Dufour, Francois D., Baxter, Alan G., and Silveira, Pablo A. (2008) Interactions between B-lymphocytes and Type 1 NKT cells in autoimmune diabetes. Journal of Immunotoxicology, 5 (2). pp. 249-257.

Baxter, Alan G. (2007) The origin and application of experimental autoimmune encephalomyelitis. Nature Reviews Immunology, 7 (11). pp. 904-912.

Hodgkin, Philip D., Heath, William R., and Baxter, Alan G. (2007) The clonal selection theory: 50 years since the revolution. Nature Immunology, 8 (10). pp. 1019-1026.

Vangaveti, Venkat N., Jose, Roby J., and Baxter, Alan G. (2007) NOD.Cd1-/- mice have increased numbers of CD4+CD25+Foxp3+ T regulatory cells in the periphery. In: [Presented at the 8th Annual Retreat of the Brisbane Immunology Group]. From: BIG 2007: 8th Annual Retreat of the Brisbane Immunology Group, 23-24 August 2007, Sunshine Coast, QLD, Australia.

Grose, Randall H., Thompson, Fiona M., Baxter, Alan G., Pellicci, Daniel G., and Cummins, Adrian G. (2007) Deficiency of invariant NK T cells in Crohn's disease and ulcerative colitis. Digestive Diseases and Sciences, 52 (6). pp. 1415-1422.

Jordan, Margaret A., Fletcher, Julie M., Pellicci, Daniel, and Baxter, Alan G. (2007) Slamf1, the NKT cell control gene Nkt1. Journal of Immunology, 178 (3). pp. 1618-1627.

Ang, Desmond K.Y., Brodnicki, Thomas C., Jordan, Margaret A., Wilson, Wendy E., Silveira, Pablo, Gliddon, Briony L., Baxter, Alan G., and van Driel, Ian R. (2007) Two genetic loci independently confer susceptibility to autoimmune gastritis. International Immunology, 19 (9). pp. 1135-1144.

Baxter, Alan G. (2006) Self/non-self recognition. In: Pollard, K. Michael, (ed.) Autoantibodies and Autoimmunity: molecular mechanisms in health and disease. Wiley-VCH, Weinheim, Germany, pp. 37-61.

Biros, Erik, Jordan, Margaret A., and Baxter, Alan G. (2005) Genes mediating environment interactions in type 1 diabetes. Review of Diabetic Studies, 2 (4). pp. 192-207.

Baxter, Alan G., Jordan, Margaret A., Silveira, Pablo A., Wilson, Wendy E., and van Driel, Ian R. (2005) Genetic control of susceptibility to autoimmune gastritis. International Reviews of Immunology, 24 (1-2). pp. 55-62.

Liston, Adrian, Lesage, Sylvie, Gray, Daniel H. D., O’Reilly, Lorraine A., Strasser, Andreas, Fahrar, Aude M., Boyd, Richard L., Wilson, Judith, Baxter, Alan G., Gallo, Elena M., Crabtree, Gerald R., Peng, Kaiman, Wilson, Susan R., and Goodnow, Christopher C. (2004) Generalised resistance to thymic deletion in the NOD mouse: a polygenic trait characterized by defective induction of Bim. Immunity, 21 (6). pp. 817-830.

Baxter, Alan G., and Duckworth, Rowena C. (2004) Models of type I (autoimmune) diabetes. Drug Discovery Today: Disease Models, 1 (4). pp. 451-455.

Jordan, Margaret A., Fletcher, Julie, and Baxter, Alan G. (2004) Genetic control of NKT cell number. Immunology and Cell Biology, 82 (3). pp. 276-284.

Smallwood, Lisa, and Baxter, Alan G. (2004) On lawnmowers and lay-down misères. Immunology, 111 (3). pp. 252-253.

Riminton, D. Sean, Kandasamy, Rama, Dravec, Danijela, Basten, Antony, and Baxter, Alan G. (2004) Dermal enhancement: bacterial products on intact skin induce and augment organ-specific autoimmune disease. Journal of Immunology, 172 (1). pp. 302-309.

Fletcher, Julie, Jordan, Margaret, and Baxter, Alan (2004) Type 1 Diabetes and NKT Cells: A Report on the 3rd International Workshop on NKT Cells and CD1-Mediated Antigen Presentation, September 2004, Heron Island, QLD, Australia. The Review of Diabetic Studies, 1 (3). pp. 139-141.

Esteban, Luis M., Tsoutsman, Tatiana, Jordan, Margaret A., Roach, Daniel, Poulton, Lynn D., Brooks, Andrew, Naidenko, Olga V., Sidobre, Stephane, Godfrey, Dale I., and Baxter, Alan G. (2003) Genetic control of NKT cell numbers maps to major diabetes and lupus loci. Journal of Immunology, 171 (6). pp. 2873-2878.

Crowe, Nadine Y., Godfrey, Dale I. , and Baxter, Alan G. (2003) Natural killer T cells are targets for human immunodeficiency virus infection. Immunology, 108 (1). pp. 1-2.

van Driel, Ian R., Baxter, Alan G. , Laurie, Karen L. , Zwar, Tricia D., La Gruta, Nicole L., Judd, Louise M., Scarff, Katrina L., Silveira, Pablo A., and Gleeson, Paul A. (2002) Immunopathogenesis, loss of T cell tolerance and genetics of autoimmune gastritis. Autoimmunity Reviews, 1 (5). pp. 290-297.

Baxter, Alan G., and Hodgkin, Philip D. (2002) Activation rules: the two-signal theories of immune activation. Nature Reviews Immunology, 2. pp. 439-446.

Pellicci, Daniel G., Hammond, Kirsten J. L., Uldrich, Adam P., Baxter, Alan G., Smyth, Mark J., and Godfrey, Dale I. (2002) A natural killer T (NKT) cell developmental pathway involving a thymus dependent, NK1.1-CD4+ CD1d-dependent precursor stage. The Journal of Experimental Medicine, 195 (7). pp. 835-844.

Baxter, Alan G., and Smyth, Mark J. (2002) The role of NK cells in autoimmune disease. Autoimmunity , 35 (1). pp. 1-14.

Silveira, Pablo A., Wilson, Wendy E., Esteban, Luis M., Jordan, Margaret A., van Driel, Ian R., and Baxter, Alan G. (2001) Identification of the Gasa3 and Gasa4 autoimmune gastritis susceptibility genes using congenic mice and partitioned, segregative and interaction analyses. Immunogenetics, 53. pp. 741-750.

Baxter, Alan G. (2001) Louis Pasteur's beer of revenge. Nature Reviews Immunology, 1 (3). pp. 229-232.

Sze, Daniel M.-Y., Giesajtis, Gillian, Brown, Ross D., Raitakari, Maria, Gibson, John, Ho, Joy, Baxter, Alan G., Fazekas de St Groth, Barbara, Basten, Antony, and Joshua, Douglas E. (2001) Clonal cytotoxic T cells are expanded in myeloma and reside in the CD8+CD57+CD28- compartment. Blood, 98 (9). pp. 2817-2827.

Poulton, Lynn D., and Baxter, Alan G. (2001) Clinical application of NKT cell assays to the prediction of type 1 diabetes. Diabetes/Metabolism Research and Reviews, 17 (6). pp. 429-435.

Esteban, L.M., and Baxter, A.G. (2001) Polyspecificity of autoimmune responses in type 1 (autoimmune) diabetes. Clinical and Experimental Immunology, 126 (2). pp. 184-186.

Hammond, Kirsten J. L., Pellicci, Daniel G., Poulton, Lynn D., Naidenko, Olga V., Scalzo, Anthony A., Baxter, Alan G., and Godfrey, Dale I. (2001) CD1d-restricted NKT cells: an interstrain comparison. Journal of Immunology, 167. pp. 1164-1173.

Poulton, Lynn D., Smyth, Mark J., Hawke, Christine G., Silveira, Pablo, Shepherd, Darren, Naidenko, Olga V., Godfrey, Dale I., and Baxter, Alan G. (2001) Cytometric and functional analyses of NK and NKT cell deficiencies in NOD mice. International Immunology, 13 (7). pp. 887-896.

Baxter, Alan G. (2001) Modelling the effects of genetic and environmental factors on the risk of autoimmune disease. Journal of Autoimmunity, 16 (3). pp. 331-335.

Silveira, P.A., and Baxter, A.G. (2001) The NOD mouse as a model of SLE. Autoimmunity , 34 (1). pp. 53-64.

Godfrey, Dale I., Hammond, Kirsten J. L., Poulton, Lynn D., Smyth, Mark J. , and Baxter, Alan G. (2000) NKT cell facts, functions and fallacies. Immunology Today, 21 (11). pp. 573-583.

Baxter, Alan G. (2000) Symptomless infection with Ebola virus. Lancet, 355 (9222). pp. 2178-2179.

Baxter, Alan (2000) The cells that knew too much. Journal of Clinical Investigation, 105 (12). pp. 1675-1677.

Baxter, Alan (2000) Germ Warfare: breakthroughs in immunology. Allen & Unwin, St Leonards, N.S.W., Australia, pp. 1-220.

Jordan, Margaret A., Silveira, Pablo A., Shepherd, Darren P., Chu, Clara, Kinder, Simon J., Chen, Jianhe, Palmisano, Linda J., Poulton, Lynn D., and Baxter, Alan G. (2000) Linkage analysis of systemic lupus erythematosus induced in diabetes-prone NOD mice by Mycobacterium bovis. Journal of Immunology, 165. pp. 1673-1684.

Silveira, Pablo A., Baxter, Alan G., Cain, Wendy E., and van Driel, Ian R. (1999) A single major gene controls susceptibility to a neonatal thymectomy induced autoimmune disease. The Journal of Immunology, 162. pp. 5106-5111.

Silveira, Pablo A., Jordan, Margaret A., and Baxter, Alan G. (1999) Dissecting genetic mechanisms conferring susceptibility to autoimmune diseases. Current Allergy and Clinical Immunology, 12. pp. 10-16.

Smyth, Mark J., Johnstone, Ricky W., Cretney, Erika, Haynes, Nicole M., Sedgwick, Jonathon D., Korner, Heiner, Poulton, Lynn D., and Baxter, Alan G. (1999) Multiple deficiencies underlie NK cell inactivity in lymphotoxin-α gene knockout mice. Journal of Immunology, 163 (3). pp. 1350-1353.

Hammond, Kirsten J. L., Pelikan, Sonja B., Crowe, Nadine Y., Randle-Barrett, Elise, Nakayama, Toshinori, Taniguchi, Masaru, Smyth, Mark J., van Driel, Ian R., Scollay, Roland, Baxter, Alan G., and Godfrey, Dale I. (1999) NKT cells are phenotypically and functionally diverse. European Journal of Immunology, 29 (11). pp. 3768-3781.

Silveira, Pablo A., Baxter, Alan G., Cain, Wendy E., and van Driel, Ian R. (1999) A major linkage region on distal chromosome 4 confers susceptibility to mouse autoimmune gastritis. Journal of Immunology, 162 (9). pp. 5106-5111.

Smyth, Mark J., Kelly, Janice M., Baxter, Alan G., Körner, Heinrich, and Sedgwick, Jonathon D. (1998) An essential role for tumor necrosis factor in natural killer cell-mediated tumor rejection in the peritoneum. The Journal of Experimental Medicine, 188 (9). pp. 1611-1619.

Horsfall, A.C., Howson, R., Silviera, P., Williams, D.G., and Baxter, A.G (1998) Characterisation and specificity of B cell responses in lupus induced by M.bovis in NOD/Lt mice. Immunology, 95 (1). pp. 8-17.

Hammond, Kirsten J.L., Poulton, Lynn D., Palmisano, Linda J., Silveira, Pablo A., Godfrey, Dale I., and Baxter, Alan G. (1998) αβTCR+ CD4-CD8- (NKT) Thymocytes Prevent Insulin Dependent Diabetes Mellitus in NOD/Lt Mice by the Influence of IL4 and/or IL-10. The Journal of Experimental Medicine, 187 (7). pp. 1047-1056.

Price, P., Baxter, A.G., Allcock, R.N., and Papadimitriou, J.M. (1998) Factors influencing the effects of murine cytomegalovirus on the pancreas. European Journal of Clinical Investigation, 28 (7). pp. 546-553.

Baxter, Alan G., Kinder, Simon J., Hammond, Kirsten J.L., Scollay, Roland, and Godfrey, Dale I. (1997) Association between αβTcR+CD4-CD8- T-cell deficiency and IDDM in NOD/Lt mice. Diabetes, 46 (4). pp. 572-582.

Godfrey, Dale I., Kinder, Simon J., Silvera, Pablo, and Baxter, Alan G. (1997) Flow cytometric study of T cell development in NOD mice reveals a deficiency in αβTCR+CD4-CD8- thymocytes. Journal of Autoimmunity, 10 (3). pp. 279-285.

Gazda, Lawrence S., Baxter, Alan G., and Lafferty, Kevin J. (1996) Regulation of autoimmune diabetes: characteristics of non-islet-antigen specific therapies. Immunology and Cell Biology, 74 (5). pp. 401-407.

Allison, Janette, McClive, Peter, Oxbrow, Leonie, Baxter, Alan, Morahan, Grant, and Miller, Jacques F.A.P. (1994) Genetic requirements for acceleration of diabetes in non-obese diabetic mice expressing interleukin-2 in islet beta cells. European Journal of Immunology, 24 (10). pp. 2535-2541.

Baxter, A G, Horsfall, A C, Healey, D, Ozegbe, P, Day, S, Williams, D G, and Cooke, A (1994) Mycobacteria precipitate SLE-like syndrome in diabetes prone NOD mice. Immunology, 83 (2). pp. 227-231.

Morahan, Grant, McClive, Peter, Huang, Dexing, Little, Peter, and Baxter, Alan (1994) Genetic and physiological association of diabetes susceptibility with raised Na+/H+ exchange activity. Proceedings of the National Academy of Sciences of the United States of America, 91 (13). pp. 5898-5902.

Baxter, A.G., Healey, D., and Cooke, A. (1994) Mycobacteria precipitate autoimmune rheumatic disease in NOD mice via an adjuvant-like activity. Scandinavian Journal of Immunology, 39 (6). pp. 602-606.

Baxter, Alan G., and Cooke, Anne (1994) Commentary on: Peptide therapy for diabetes in NOD mice. Lancet, 343 (8906). p. 1169.

McClive, Peter J., Baxter, Alan G., and Morahan, Grant (1994) Genetic polymorphisms of the non-obese diabetic (NOD) mouse. Immunology and Cell Biology, 72 (2). pp. 137-142.

Baxter, Alan George, and Cooke, Anne (1993) Complement lytic activity has no role in the pathogenesis of autoimmune diabetes in NOD mice. Diabetes, 42 (11). pp. 1574-1578.

Baxter, A.G., Hamilton, F., Mandel, T.E., Augustine, C., Cooke, A., and Morahan, G. (1993) Genetic basis for diabetes resistance in NOD/Wehi mice. International Journal of Immunogenetics, 20 (5). pp. 409-417.

Baxter, A G, and Mandel, T E (1991) Accelerated diabetes in NOD mice differing in incidence of spontaneous disease. Clinical and Experimental Immunology, 85 (3). pp. 464-468.

Baxter, Alan G., and Mandel, Thomas E. (1991) Hemolytic anaemia in nonobese diabetic mice. European Journal of Immunology, 21 (9). pp. 2051-2055.

Baxter, Alan G, Koulmanda, Maria, and Mandel, Thomas E (1991) High and low diabetes incidence nonobese diabetic (NOD) mice: Origins and characterization. Autoimmunity , 9 (1). pp. 61-67.

Baxter, Alan G., Adams, Mark A., and Mandel, Thomas E. (1989) Comparison of high and low diabetes incidence non-obese diabetic mouse strains. Diabetes, 38 (10). pp. 1296-1300.