A

Anderson, Kristen D., Cantin, Neal E., Casey, Jordan M., and Pratchett, Morgan S. (2019) Independent effects of ocean warming versus acidification on the growth, survivorship and physiology of two Acropora corals. Coral Reefs, 38 (6). pp. 1225-1240.

Alamgir, Mohammed, Sloan, Sean, Campbell, Mason J., Engert, Jayden, Kiele, Regina, Porolak, Gabriel, Mutton, Thomas, Brenier, Ambroise, Ibisch, Pierre L., and Laurance, William F. (2019) Infrastructure expansion challenges sustainable development in Papua New Guinea. PLoS ONE, 14 (7). e0219408.

Adams, Matthew P., Collier, Catherine J., Uthicke, Sven, Ow, Yan X., Langlois, Lucas, and O'brien, Katherine R. (2017) Model fit versus biological relevance: evaluating photosynthesis-temperature models for three tropical seagrass species. Scientific Reports, 7. 39930. pp. 1-12.

Ainsworth, Tracy D., and Gates, Ruth D. (2016) Corals' microbial sentinels: the coral microbiome will be key to future reef health. Science, 352 (6293). pp. 1518-1519.

Angly, Florent E., Pantos, Olga, Morgan, Thomas C., Rich, Virginia, Tonin, Hemerson, Bourne, David G., Mercurio, Philip, Negri, Andrew P., and Tyson, Gene W. (2016) Diuron tolerance and potential degradation by pelagic microbiomes in the Great Barrier Reef lagoon. PeerJ, 4. e1758. pp. 1-23.

Angly, Florent E., Heath, Candice, Morgan, Thomas C., Tonin, Hemerson, Rich, Virginia, Schaffelke, Britta, Bourne, David G., and Tyson, Gene W. (2016) Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events. PeerJ, 4. e1511. pp. 1-24.

Anderson, Kristen Deanna (2016) Temporal and spatial variation in the growth of branching corals. PhD thesis, James Cook University.

Aguilar Hurtado, Catalina (2016) Transcriptomic analyses of the responses of corals to environmental stress. PhD thesis, James Cook University.

Atkin, Owen K., Bloomfield, Keith J., Reich, Peter B., Tjoelke, Mark G., Asner, Gregory P., Bonal, Damien, Bönisch, Gehard, Bradford, Matt G., Cernusak, Lucas A., Cosio, Eric G., Creek, Danielle, Crous, Kristine Y., Domingues, Tomas F., Dukes, Jeffrey S., Egerton, John J.G., Evans, John R., Farquhar, Graham D., Fyllas, Nikolaos M., Gauthier, Paul P.G., Gloor, Emanuel, Gimeno, Teresa E., Griffin, Kevin L., Guerrieri, Rossella, Heskel , Mary A., Huntingford, Chris, Ishida, François Yoko, Kattage, Jens, Lambers, Hans, Liddell, Michael J., Lloyd, Jon, Lusk, Christopher H., Martin, Roberta E., Maskimov, Ayal P., Maximov, Trofim C., Malhi, Yadvinder, Medlyn, Belinda E., Meir, Patrick, Mercado, Lina, Mirotchnick, Nicholas, Ng, Desmond, Niinemets, Ulo, O'Sullivan, Odhran S., Phillips, Oliver L., Poorter, Lourens, Poot, Pieter, Prentice, I. Colin, Salinas, Norma, Rowland, Lucy M., Ryan, Michael G., Sitch, Stephen, Slot, Martijn, Smith, Nicholas G., Turnbull, Matthew H., VanderWel, Mark C., Valldares, Fernando, Veneklaas, Erik J., Weerasinghe, Lasantha K., Wirth, Christian, Wright, Ian J., Wythers, Kirk R., Xiang, Jen, Xiang, Shuang, and Zaragoza-Castells, Joana (2015) Global variability in leaf respiration in relation to climate, plant functional types and leaf traits. New Phytologist, 206 (2). pp. 614-636.

Apgaua, Deborah M.G., Ishida, François Y., Tng, David Y.P., Laidlaw, Melinda J., Santos, Rubens M., Rumman, Rizwana, Eamus, Derek, Holtum, Joseph A.M., and Laurance, Susan G.W. (2015) Functional traits and water transport strategies in lowland tropical rainforest trees. PLoS ONE, 10 (6). e0130799. pp. 1-19.

Alamgir, Mohammed, Pert, Petina L., and Turton, Stephen M. (2014) A review of ecosystem services research in Australia reveals a gap in integrating climate change and impacts on ecosystem services. The International Journal of Biodiversity Science, Ecosystems Services & Management, 10 (2). pp. 112-127.

Albright, Rebecca, and Mason, Benjamin (2013) Projected near-future levels of temperature and pCO2 reduce coral fertilization success. PLoS ONE, 8 (2). e56468. pp. 1-8.

Anderson, Alexander Sibthorpe (2011) Influences of past, present and future climate on the structure and diversity of rainforest bird assemblages in north-eastern Australia. PhD thesis, James Cook University.

Abrantes, Kátya G., and Barnett, Adam (2011) Intrapopulation variations in diet and habitat use in a marine apex predator, the broadnose sevengill shark Notorynchus cepedianus. Marine Ecology Progress Series, 442. pp. 133-148.

Abrantes, Kátya Gisela, and Sheaves, Marcus (2010) Importance of freshwater flow in terrestrial–aquatic energetic connectivity in intermittently connected estuaries of tropical Australia. Marine Biology, 157 (9). pp. 2071-2086.

Andersson, Micha, Krockenberger, Andrew, and Schwarzkopf, Lin (2010) Experimental manipulation reveals the importance of refuge habitat temperature selected by lizards. Austral Ecology, 35 (3). pp. 294-299.

Ainsworth, Tracy D., Thurber, Rebecca Vega, and Gates, Ruth D. (2010) The future of coral reefs: a microbial perspective. Trends in Ecology and Evolution, 25 (4). pp. 233-240.

Abrantes, Kátya, and Sheaves, Marcus (2010) Use of a δ13C–δ15N relationship to determine animal trophic positions in a tropical Australian estuarine wetland. Austral Ecology, 35 (1). pp. 96-103.

Abrantes, Kátya, and Sheaves, Marcus (2009) Sources of nutrition supporting juvenile penaeid prawns in an Australian dry tropics estuary. Marine and Freshwater Research, 60 (9). pp. 949-959.

Anthony, Kenneth R.N., Hoogenboom, Mia O., Maynard, Jeffrey A., Grottoli, Andréa G., and Middlebrook, Rachael (2009) Energetics approach to predicting mortality risk from environmental stress: a case study of coral bleaching. Functional Ecology, 23 (3). pp. 539-550.

Abrantes, Kátya, and Sheaves, Marcus (2009) Food web structure in a near-pristine mangrove area of the Australian Wet Tropics. Estuarine, Coastal and Shelf Science, 82 (4). pp. 597-607.

Ainsworth, T.D., and Hoegh-Guldberg, O. (2009) Bacterial communities closely associated with coral tissues vary under experimental and natural reef conditions and thermal stress. Aquatic Biology, 4 (3). pp. 289-296.

B

Barneche, D.R., Rezende, E.L., Parravicini, V., Maire, E., Edgar, G.J., Stuart-Smith, R.D., Arias-González, J.E., Ferreira, C.E.L., Friedlander, A.M., Green, A.L., Luiz, O.J., Rodríguez-Zaragoza, F.A., Vigliola, L., Kulbicki, M., and Floeter, S.R. (2019) Body size, reef area and temperature predict global reef-fish species richness across spatial scales. Global Ecology and Biogeography, 28 (3). pp. 315-327.

Biscere, T., Zampighi, M., Lorrain, A., Jurriaans, S., Foggo, A., Houlbrèque, F., and Rodolfo-Metalpa, R. (2019) High pCO₂ promotes coral primary production. Biology Letters, 15 (7). 20180777.

Benkwitt, Cassandra E., Wilson, Shaun K., and Graham, Nicholas A.J. (2019) Seabird nutrient subsidies alter patterns of algal abundance and fish biomass on coral reefs following a bleaching event. Global Change Biology, 25 (8). pp. 2619-2632.

Brodnicke, O. B., Bourne, D. G., Heron, S. F., Pears, R. J., Stella, J. S., Smith, H. A., and Willis, B. L. (2019) Unravelling the links between heat stress, bleaching and disease: fate of tabular corals following a combined disease and bleaching event. Coral Reefs, 38. pp. 591-603.

Brodie, Jon, Grech, Alana, Pressey, Bob, Day, John, Dale, Allan, Morrison, Tiffany, and Wenger, Amelia (2019) The future of the Great Barrier Reef: the water quality imperative. In: Wolanski, Eric, Day, John, Elliott, Mike, and Wenger, Amelia S., (eds.) Coasts and estuaries: The future. Elsevier, Kidlington, Oxon, UK, pp. 477-499.

Bellwood, David R., Streit, Robert P., Brandl, Simon J., and Tebbett, Sterling B. (2019) The meaning of the term 'function' in ecology: a coral reef perspective. Functional Ecology, 33 (6). pp. 948-961.

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Bush, Alex, Catullo, Renee A., Mokany, Karel, Thornhill, Andrew H., Miller, Joseph, and Ferrier, Simon (2018) Truncation of thermal tolerance niches among Australian plants. Global Ecology and Biogeography, 27 (1). pp. 22-31.

Baird, Andrew H., Madin, Joshua, Álvarez-Noriega, Mariana, Fontoura, Luisa, Kerry, James T., Kuo, Chao-Yang, Precoda, Kristin, Torres-Pulliza, Damaris, Woods, Rachael M., Zawada, Kyle J.A., and Hughes, Terry P. (2018) A decline in bleaching suggests that depth can provide a refuge from global warming in most coral taxa. Marine Ecology - Progress Series, 603. pp. 257-264.

Bobeszko, Teressa (2017) Characterisation of carbonic anhydrase in the symbiotic dinoflagellate Symbiodinium. PhD thesis, James Cook University.

Bui, E.N., Thornhill, A.H., González-Orozco, C.E., Knerr, N., and Miller, J.T. (2017) Climate and geochemistry as drivers of eucalypt diversification in Australia. Geobiology, 15 (3). pp. 427-440.

Bahar, Nur H.A., Ishida, F. Yoko, Weerasinghe, Lasantha K., Guerrieri, Rossella, O'Sullivan, Odhran S., Bloomfield, Keith J., Asner, Gregory P., Martin, Roberta E., Lloyd, Jon, Malhi, Yadvinder, Phillips, Oliver L., Meir, Patrick, Salinas, Norma, Cosio, Eric G., Domingues, Tomas F., Quesada, Carlos A., Sinca, Felipe, Escudero Vega, Alberto, Zuloaga Ccorimanya, Paola P., del Aguila-Pasquel, Jhon, Quispe Huaypar, Katherine, Cuba Torres, Israel, Butron Loayza, Rosalbina, Pelaez Tapia, Yulina, Huaman Ovalle, Judit, Long, Benedict M., Evans, John R., and Atkin, Owen K. (2017) Leaf-level photosynthetic capacity in lowland Amazonian and high-elevation Andean tropical moist forests of Peru. New Phytologist, 214 (3). pp. 1002-1018.

Bourne, David G., Morrow, Kathleen M., and Webster, Nicole S. (2016) Insights into the coral microbiome: underpinning the health and resilience of reef ecosystems. Annual Review of Microbiology, 70. pp. 317-340.

Bennett, Holly M., Altenrath, Christine, Woods, Lisa, Davy, Simon K., Webster, Nicole S., and Bell, James J. (2016) Interactive effects of temperature and pCO2 on sponges: from the cradle to the grave. Global Change Biology, 23. pp. 2031-2046.

Beringer, Jason, Hutley, Lindsay B., Abramson, David, Arndt, Stefan K., Briggs, Peter, Bristow, Mila, Canadell, Josep G., Cernusak, Lucas A., Eamus, Derek, Edwards, Andrew C., Evans, Bradley J., Fest, Benedikt, Goergen, Klaus, Grover, Samantha P., Hacker, Jörg, Haverd, Vanessa, Kanniah, Kasturi, Livesley, Stephen J., Lynch, Amanda, Maier, Stefan, Moore, Caitlin, Raupach, Michael, Russell-Smith, Jeremy, Scheiter, Simon, Tapper, Nigel J., and Uotila, Petteri (2015) Fire in Australian savannas: from leaf to landscape. Global Change Biology, 21 (1). pp. 62-81.

Bridge, Thomas C.L., Ferrari, Renata, Bryson, Mitch, Hovey, Renae, Figueira, Will F., Williams, Stefan B., Pizarro, Oscar, Harborne, Alastair R., and Byrne, Maria (2014) Variable responses of benthic communities to anomalously warm sea temperatures on a high-latitude coral reef. PLoS ONE, 9 (11). e113079. pp. 1-20.

Bowden, A.J., Gardiner, N.M., Couturier, C.S., Stecyk, J.A.W, Nilsson, G.E., Munday, P.L., and Rummer, J.L. (2014) Alterations in gill structure in tropical reef fishes as a result of elevated temperatures. Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 175. pp. 64-71.

Ban, Stephen S., Pressey, Robert L., and Graham, Nicholas A.J. (2014) Assessing interactions of multiple stressors when data are limited: a Bayesian belief network applied to coral reefs. Global Environmental Change, 27. pp. 64-72.

Bradshaw, Corey J.A., Bowman, David M.J.S., Bond, Nick R., Murphy, Brett P., Moore, Andrew D., Fordham, Damien A., Thackway, Richard, Lawes, Michael J., McCallum, Hamish, Gregory, Stephen D., Dalal, Ram C., Boer, Matthuas M., Lynch, A. Jasmyn J., Bradstock, Ross A., Brook, Barry W., Henry, Beverley K., Hunt, Leigh P., Fisher, Diana O., Hunter, David, Johnson, Christopher N., Keith, David A., Lefroy, Edward C., Penman, Trent D., Meyer, Wayne S., Thomson, James R., Thornton, Craig M., VanDerWal, Jeremy, Williams, Richard J., Keniger, Lucy, and Specht, Alison (2013) Brave new green world: consequences of a carbon economy for the conservation of Australian biodiversity. Biological Conservation, 161. pp. 71-90.

Bridge, Tom C.L., Hughes, Terry P., Guinotte, John M., and Bongaerts, Pim (2013) Call to protect all coral reefs. Nature Climate Change, 3. pp. 528-530.

Browne, N.K., Smithers, S.G., and Perry, C.T. (2013) Spatial and temporal variations in turbidity on two inshore turbid reefs on the Great Barrier Reef, Australia. Coral Reefs, 32 (1). pp. 195-210.

Bauman, Andrew Geoffrey (2013) The ecology and dynamics of coral reef communities in an extreme reef environment: the southern Persian Gulf. PhD thesis, James Cook University.

Bridge, T.C.L., Fabricius, K.E., Bongaerts, P., Wallace, C.C., Muir, P.R., Done, T.J., and Webster, J.M. (2012) Diversity of Scleractinia and Octocorallia in the mesophotic zone of the Great Barrier Reef, Australia. Coral Reefs, 31 (1). pp. 179-189.

Bridge, T., Scott, A., and Steinberg, D. (2012) Abundance and diversity of anemonefishes and their host sea anemones at two mesophotic sites on the Great Barrier Reef, Australia. Coral Reefs, 31 (4). pp. 1057-1062.

Bartoń, K.A., Hovestadt, T., Phillips, B.L., and Travis, J.M.J. (2012) Risky movement increases the rate of range expansion. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1731). pp. 1194-1202.

Bernatchez, Louis, St-Cyr, Jérôme, Normandeau, Eric, Maes, Gregory E., Als, Thomas D., Kalujnaia, Svetlana, Cramb, Gordon, Castonguay, Martin, and Hansen, Michael M. (2011) Differential timing of gene expression regulation between leptocephali of the two Anguilla eel species in the Sargasso Sea. Ecology and Evolution, 1 (4). pp. 459-467.

Barnett, Adam, Abrantes, Kátya G., Stevens, John D., and Semmens, Jayson M. (2011) Site fidelity and sex-specific migration in a mobile apex predator: implications for conservation and ecosystem dynamics. Animal Behaviour, 81 (5). pp. 1039-1048.

Briant, Gaël, Gond, Valéry, and Laurance, Susan G.W. (2010) Habitat fragmentation and the desiccation of forest canopies: a case study from eastern Amazonia. Biological Conservation, 143 (11). pp. 2763-2769.

Baker, Ron, and Sheaves, Marcus (2009) Refugees or ravenous predators: detecting predation on new recruits to tropical estuarine nurseries. Wetlands Ecology and Management, 17 (4). pp. 317-330.

Baird, Andrew H., Cumbo, Vivian R., Leggat, Bill, and Rodriguez-Lanetty, Mauricio (2007) Fidelity and flexibility in coral symbioses. Marine Ecology Progress Series, 347. pp. 307-309.

Berkelmans, Ray (2001) Bleaching, upper thermal limits and temperature adaptation in reef corals. PhD thesis, James Cook University.

C

Corkeron, M.L., and Slezak, P.R. (2020) Stromatolite framework builders: ecosystems in a Cryogenian interglacial reef. Australian Journal of Earth Sciences.

Cocciardi, Jennifer M., Hoskin, Conrad J., Morris, Wayne, Warburton, Russell, Edwards, Lexie, and Higgie, Megan (2019) Adjustable temperature array for characterizing ecological and evolutionary effects on thermal physiology. Methods in Ecology and Evolution, 10 (8). pp. 1339-1346.

Chakravarti, Leela J. (2019) Manipulation of coral photosymbionts for enhancing resilience to environmental change. PhD thesis, James Cook University.

Cumming, Graeme S., and von Cramon-Taubadel, Stephan (2018) Reply to O’Sullivan: Wicked problems demand sophisticated understandings of complexity and feedbacks, not focus on a single variable. National Academy of Sciences. Proceedings, 115 (48). E11202-E11203.

Clark, Timothy D., Messmer, Vanessa, Tobin, Andrew J., Hoey, Andrew S., and Pratchett, Morgan S. (2017) Rising temperatures may drive fishing-induced selection of low-performance phenotypes. Scientific Reports, 7. 40571.

Canyon, Deon, Speare, Rick, and Burkle, Frederick M. (2016) Forecasted impact of climate change on infectious disease and health security in Hawaii by 2050. Disaster Medicine and Public Health Preparedness, 10 (6). pp. 797-804.

Collins, Geoffrey M. (2016) Phenotypic drivers of hypoxia tolerance in a tropical diadromous fish (Lates calcarifer). PhD thesis, James Cook University.

Camps, Mercedes, Benavides, Mar, Lema, Kimberley A., Bourne, David G., Grosso, Olivier, and Bonnet, Sophie (2016) Released coral mucus does not enhance planktonic N2 fixation rates. Aquatic Microbial Ecology, 77 (1). pp. 51-63.

Cernusak, Lucas A. (2015) Climate Change Ecology: tropical languor. Nature Geoscience, 8. pp. 4-5.

Cernusak, Lucas A., and English, Nathan B. (2015) Beyond tree-ring widths: stable isotopes sharpen the focus on climate responses of temperate forest trees. Tree Physiology, 35 (1). pp. 1-3.

Chen, Wei, Pike, David A., He, Dujuan, Wang, Ying, Ren, Lina, Wang, Xinyi, Fan, Xiaogang, and Lu, Xin (2014) Altitude decreases testis weight of a frog (Rana kukunoris) on the Tibetan plateau. Herpetological Journal, 24 (3). pp. 183-188.

Chong-Seng, Karen Michelle (2014) Ecological structure and processes on disturbed coral reefs. PhD thesis, James Cook University.

Craig, Robin Kundis, and Hughes, Terry P. (2014) Marine protected areas, marine spatial planning and the resilience of marine ecosystems. In: Garmestani, Ahjond S., and Allen, Craig R., (eds.) Social-Ecological Resilience and Law. Columbia University Press, New York, NY, USA, pp. 98-141.

Capon, Samatha J., Chambers, Lynda E., Mac Nally, Ralph, Naiman, Robert J., Davies, Peter, Marshall, Nadine, Pittock, Jamie, Reid, Michael, Capon, Timothy, Douglas, Michael, Catford, Jane, Baldwin, Darren S., Stewardson, Michael, Roberts, Jane, Parsons, Meg, and Williams, Stephen E. (2013) Riparian ecosystems in the 21st century: hotspots for climate change adaptation? Ecosystems, 16 (3). pp. 359-381.

Coker, Darren J. (2012) The importance of live coral habitat for reef fishes and its role in key ecological processes. PhD thesis, James Cook University.

Cole, Andrew (2011) Energetic costs of chronic fish predation on reef-building corals. PhD thesis, James Cook University.

Cumbo, Vivian Ruth (2011) The establishment and development of symbiosis in coral larvae. PhD thesis, James Cook University.

Cvitanovic, C., and Hoey, A.S. (2010) Benthic community composition influences within-habitat variation in macroalgal browsing on the Great Barrier Reef. Marine and Freshwater Research, 61 (9). pp. 999-1005.

Couper, Patrick J., and Hoskin, Conrad J. (2008) Litho-refugia: the importance of rock landscapes for the long-term persistence of Australian rainforest fauna. Australian Zoologist, 34 (4). pp. 554-560.

D

DeCarlo, Thomas M., Harrison, Hugo B., Gajdzik, Laura, Alaguarda, Diego, Rodolfo-Metalpa, Riccardo, D'Olivo, Juan, Liu, Gang, Patalwala, Diana, and McCulloch, Malcolm T. (2019) Acclimatization of massive reef-building corals to consecutive heatwaves. Proceedings of the Royal Society of London Series B, Biological Sciences, 286 (1898).

Duke, N.C., and Larkum, A.W.D. (2019) Mangroves and seagrasses. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO, Melbourne, VIC, Australia, pp. 219-228.

Duke, Norman C., Field, Colin, Mackenzie, Jock R., Meynecke, Jan-Olaf, and Wood, Apanie L. (2019) Rainfall and its possible hysteresis effect on the proportional cover of tropical tidal wetland mangroves and saltmarsh-saltpans. Marine and Freshwater Research, 70. pp. 1047-1055.

Duke, Norman C. (2017) Mangrove floristics and biogeography revisited: further deductions from biodiversity hot spots, ancestral discontinuities and common evolutionary processes. In: Rivera-Monroy, Victor H., Lee, Shing Yip, Kristensen, Erik, and Twilley, Robert R., (eds.) Mangrove Ecosystems: A Global Biogeographic Perspective - Structure, Function and Services. Springer International Publishing, Cham, Switzerland, pp. 17-53.

Denis, Vianney, Ribas-Deulofeu, Lauriane, Sturaro, Nicolas, Kuo, Chao-Yang, and Chen, Chaolun Allen (2017) A functional approach to the structural complexity of coral assemblages based on colony morphological features. Scientific Reports, 7. 9849.

Donelson, Jennifer M., Wong, Marian, Booth, David J., and Munday, Philip L. (2016) Transgenerational plasticity of reproduction depends on rate of warming across generations. Evolutionary Applications, 9 (9). pp. 1072-1081.

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Donelson, Jennifer M. (2015) Development in a warm future ocean may enhance performance in some species. Journal of Experimental Marine Biology and Ecology, 472. pp. 119-125.

Domingues, Thomas Ferreira, Ishida, F. Yoko, Feldpausch, Ted R., Grace, John, Meir, Patrick, Saiz, Gustavo, Sene, Olivier, Schrodt, Franziska, Sonké, Bonaventure, Taedoumg, Herman, Veenendaal, Elmar M., Lewis, Simon, and Lloyd, Jon (2015) Biome-specific effects of nitrogen and phosphorus on the photosynthetic characteristics of trees at a forest-savanna boundary in Cameroon. Oecologia, 178 (3). pp. 659-672.

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E

Ekstrom, Julia A., Suatoni, Lisa, Cooley, Sarah R., Pendleton, Linwood H., Waldbusser, George G., Cinner, Josh E., Ritter, Jessica, Langdon, Chris, van Hooidonk, Ruben, Gledhill, Dwight, Wellman, Katharine, Beck, Michael W., Brander, Luke M., Rittschof, Dan, Doherty, Carolyn, Edwards, Peter E.T., and Portela, Rosimeiry (2015) Vulnerability and adaptation of US shellfisheries to ocean acidification. Nature Climate Change, 5 (3). pp. 207-214.

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