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Number of items at this level: 254.

A

Amoroso, G., Cobcroft, J.M., Adams, M.B., Ventura, T., and Carter, C. G. (2016) Concurrence of lower jaw skeletal anomalies in triploid Atlantic salmon (Salmo salar L.) and the effect on growth in freshwater. Journal of Fish Diseases, 39 (12). pp. 1509-1521.

Ariel, Ellen, Steckler, Natalie K., Subramaniam, Kuttichantran, Olesen, Niels J., and Waltzek, Thomas B. (2016) Genomic sequencing of ranaviruses isolated from turbot (Scophthalmus maximus) and Atlantic cod (Gadus morhua). Genome Announcements, 4 (6). e01393-16. pp. 1-2.

Amoroso, Gianluca, Ventura, Tomer, Cobcroft, Jennifer M., Adams, Mark B., Elizur, Abigail, and Carter, Chris (2016) Multigenic delineation of lower jaw deformity in triploid Atlantic salmon (Salmo salar L.). PLoS ONE, 11 (12). e0168454. pp. 1-21.

Amoroso, G., Adams, M.B., Ventura, T., Carter, C.G., and Cobcroft, J.M. (2016) Skeletal anomaly assessment in diploid and triploid juvenile Atlantic salmon (Salmo salar L.) and the effect of temperature in freshwater. Journal of Fish Diseases, 39 (4). pp. 449-466.

Athauda, A.R. Saman Bandara (2014) Effect of culture environmental conditions on sex inversion of Asian seabass (barramundi), Lates calcarifer (Bloch). PhD thesis, James Cook University.

Andrews, Melanie, Cobcroft, Jennifer M., Battaglene, Stephen C., Valdenegro, Victoria, Martin, Melissa B., and Nowak, Barbara F. (2013) Parasitic crustaceans infecting cultured striped trumpeter Latris lineata. Aquaculture, 416. pp. 280-288.

Ahmed, Faruq, Li, Yan, and Schenk, Peer M. (2012) Algal biorefinery: sustainable production of biofuels and aquaculture feed? In: Gordon, Richard, and Seckbach, Joseph, (eds.) The Science of Algal Fuels: phycology, geology, biophotonics, genomics and nanotechnology. Cellular Origin, Life in Extreme Habitats and Astrobiology, 25 . Springer, Dordrecht, the Netherlands, pp. 21-41.

Ariel, Ellen, Holopainen, Riikka, Olesen, Niels Jørgen, and Tapiovaara, Hannele (2010) Comparative study of ranavirus isolates from cod (Gadus morhua) and turbot (Psetta maxima) with reference to other ranaviruses. Archives of Virology, 155 (8). pp. 1261-1271.

Andrews, M., Battaglene, S., Cobcroft, J., Adams, M., Noga, E., and Nowak, B. (2010) Host response to the chondracanthid copepod Chondracanthus goldsmidi, a gill parasite of the striped trumpeter, Latris lineata (Forster), in Tasmania. Journal of Fish Diseases, 33 (3). pp. 211-220.

Ariel, Ellen, Skall, Helle Frank, and Olesen, Niels Jørgen (2009) Susceptibility testing of fish cell lines for virus isolation. Aquaculture, 298 (1-2). pp. 125-130.

Ariel, E., and Jensen, B. Bang (2009) Challenge studies of European stocks of redfin perch, Perca fluviatilis L., and rainbow trout, Oncorhynchus mykiss (Walbaum), with epizootic haematopoietic necrosis virus. Journal of Fish Diseases, 32 (12). pp. 1017-1025.

Ariel, Ellen, Nicolajsen, Nicole, Skall, Helle Frank, Anderson, Jens Strodl, Madsen, Sanne, and Olesen, Niels Jørgen (2009) Proficiency testing of national reference laboratories for fish diseases. Aquaculture, 294 (3-4). pp. 153-158.

Ariel, Ellen, Nicolajsen, Nicole, Christophersen, Maj-Britt, Holopainen, Riikka, Tapiovaara, Hannele, and Jensen, Britt Bang (2009) Propagation and isolation of ranaviruses in cell culture. Aquaculture, 294 (3). pp. 159-164.

Ariel, Ellen, Kielgast, Jos, Svart, Hans Erik, Larsen, Knud, Tapiovaara, Hannele, Jensen, Britt Bang, and Holopainen, Riikka (2009) Ranavirus in wild edible frogs Pelophylax kl. esculentus in Denmark. Diseases of Aquatic Organisms, 85 (1). pp. 7-14.

Ariel, E. (2009) Virus. In: Buchmann, K., (ed.) Fish Diseases - An Introduction. Biofolia, Frederiksberg, Denmark, pp. 113-119.

Ariel, Ellen (2005) Ornamental fish as trans-boundary vectors of viral diseases. In: Proceedings of the Fifth Symposium on Diseases in Asian Aquaculture (5) pp. 103-112. From: Fifth Symposium on Diseases in Asian Aquaculture, 24-28 November 2002, Gold Coast, QLD, Australia.

Appleford, Peter (1996) Digestibility of feed ingredients and nutrients in artificial diets for fish. PhD thesis, James Cook University of North Queensland.

B

Brazenor, Alexander K., Saunders, Richard J., Miller, Terrance L., and Hutson, Kate S. (2018) Morphological variation in the cosmopolitan fish parasite Neobenedenia girellae (Capsalidae: Monogenea). International Journal for Parasitology, 48 (2). pp. 125-134.

Brazenor, Alexander K., Francis, David S., Hutson, Kate S., and Carton, Alexander G. (2017) Biochemical composition of marine monogenean parasite eggs. Molecular and Biochemical Parasitology, 218. pp. 1-3.

Bastos Gomes, Giana (2017) Ecology and detection of harmful freshwater fish ciliate parasites Chilodonella spp. in aquaculture. PhD thesis, James Cook University.

Bastos Gomes, G., Jerry, D.R., Miller, T.L., and Hutson, K.S. (2017) Current status of parasitic ciliates Chilodonella spp. (Phyllopharyngea: Chilodonellidae) in freshwater fish aquaculture. Journal of Fish Diseases, 40 (5). pp. 703-715.

Bastos Gomes, Giana, Miller, Terrence L., Vaughan, David B., Jerry, Dean R., McCowan, Christina, Bradley, Tracey L., and Hutson, Kate S. (2017) Evidence of multiple species of Chilodonella (Protozoa, Ciliophora) infecting Australian farmed freshwater fishes. Veterinary Parasitology, 237. pp. 8-16.

Bernatchez, Louis, Wellenreuther, Maren, Araneda, Cristián, Ashton, David T., Barth, Julia M.I., Beacham, Terry D., Maes, Gregory E., Martinsohn, Jann T., Miller, Kristina M., Naish, Kerry A., Ovenden, Jennifer R., Primmer, Craig R., Suk, Ho Young, Therkildsen, Nina O., and Withler, Ruth E. (2017) Harnessing the power of genomics to secure the future of seafood. Trends in Ecology and Evolution, 32 (9). pp. 665-680.

Banh, Quyen Q., Domingos, Jose A., Zenger, Kyall R., and Jerry, Dean R. (2017) Morphological changes and regulation of the genes dmrt1 and cyp11b during the sex differentiation of barramundi (Lates calcarifer Bloch). Aquaculture, 479. pp. 75-84.

Bastos Gomes, Giana, Hutson, Kate S., Domingos, Jose A., Chung, Catherine, Hayward, Scott, Miller, Terrance L., and Jerry, Dean R. (2017) Use of environmental DNA (eDNA) and water quality data to predict protozoan parasites outbreaks in fish farms. Aquaculture, 479. pp. 467-473.

Basiita, Rose Komugisha (2016) Genetic structure and biogeography of three commercially important African freshwater fishes: Lates niloticus, Bagrus docmak and Bagrus bayad. PhD thesis, James Cook University.

Bylemans, Jonas, Maes, Gregory E., Diopere, Eveline, Cariani, Alessia, Senn, Helen, Taylor, Martin I., Helyar, Sarah, Bargelloni, Luca, Bonaldo, Alessio, Carvalho, Gary, Guarniero, Ilaria, Komen, Hans, Martinsohn, Jann Th., Nielsen, Einar E., Tinti, Fausto, Volckaert, Filip A.M., and Ogden, Rob (2016) Evaluating genetic traceability methods for captive‑bred marine fish and their applications in fisheries management and wildlife forensics. Aquaculture Environment Interactions , 8. pp. 131-145.

Budd, Alyssa M., Banh, Quyen Q., Domingos, Jose A., and Jerry, Dean R. (2015) Sex control in fish: approaches, challenges and opportunities for aquaculture. Journal of Marine Science and Engineering, 3 (2). jmse3020329. pp. 329-355.

Brazenor, Alexander K., and Hutson, Kate S. (2015) Effects of temperature and salinity on the life cycle of Neobenedenia sp. (Monogenea: Capsalidae) infecting farmed barramundi (Lates calcarifer ). Parasitology Research, 114 (5). pp. 1875-1886.

Brazenor, Alexander K., and Hutson, Kate S. (2013) Effect of temperature and salinity on egg hatching and description of the life cycle of Lernanthropus latis (Copepoda: Lernanthropidae) infecting barramundi, Lates calcarifer. Parasitology International, 62 (5). pp. 437-447.

Battaglene, S.C., and Cobcroft, J.M. (2013) Ultraviolet irradiation is an effective alternative to ozonation as a sea water treatment to prevent Kudoa neurophila (Myxozoa: Myxosporea) infection of striped trumpeter, Latris lineata (Forster). Journal of Fish Diseases, 36 (1). pp. 57-65.

Bang Jensen, Britt, Holopainen, Riikka, Tapiovaara, Hannele, and Ariel, Ellen (2011) Susceptibility of pike-perch Sander lucioperca to a panel of ranavirus isolates. Aquaculture, 313 (1-4). pp. 24-30.

Ballagh, Debra Anne (2011) Intensive rearing techniques and feeding behaviour of larval and juvenile mulloway, Argyrosomus japonicus. PhD thesis, James Cook University.

Bang Jensen, B., Reschova, S., Cinkova, K., Ariel, E., and Vesely, T. (2011) Common carp (Cyprinus carpio) and goldfish (Carassius auratus) were not susceptible to challenge with ranavirus under certain conditions. Bulletin of the European Association of Fish Pathologists, 31 (3). pp. 112-118.

Ballagh, D.A., Pankhurst, P.M., and Fielder, D.S. (2011) Embryonic development of mulloway, Argyrosomus japonicus, and egg surface disinfection using ozone. Aquaculture, 318 (3-4). pp. 475-478.

Booth, Mark A., Allan, Geoff L., and Pirozzi, Igor (2010) Estimation of digestible protein and energy requirements of yellowtail kingfish Seriola lalandi using a factorial approach. Aquaculture, 307 (3-4). pp. 247-259.

Ballagh, Debra A., Fielder, D. Stewart, and Pankhurst, Patricia M. (2010) Weaning requirements of larval mulloway, Argyrosomus japonicus. Aquaculture Research, 41 (10). e493-e504.

Booth, Mark A., Pirozzi, Igor, Allan, Geoff L., and Fielder, D. Stewart (2010) Aquafin CRC Project 1B5: Feed Technology for Temperate f\Fish Species. Volume 2: Diet Development. Report. Industry and Investment NSW, NSW, Australia.

Bureau, Dominique P., and Hua, Katheline (2010) Towards effective nutritional management of waste outputs in aquaculture, with particular reference to salmonid aquaculture operations. Aquaculture Research, 41 (5). pp. 777-792.

Bromage, Erin, and Owens, Leigh (2009) Environmental factors affecting the susceptibility of barramundi to Streptococcus iniae. Aquaculture, 290 (3-4). pp. 224-228.

Ballagh, D.A., Pankhurst, P.M., and Fielder, D.S. (2008) Photoperiod and feeding interval requirements of juvenile mulloway, Argyrosomus japonicus. Aquaculture, 277 (1-2). pp. 52-57.

Bureau, Dominique P., Hua, Katheline, and Harris, Andrew M. (2008) The effect of dietary lipid and long-chain n-3 PUFA levels on growth, energy utilization, carcass quality, and immune function of rainbow trout, Oncorhynchus mykiss. Journal of the World Aquaculture Society, 39 (1). pp. 1-21.

Battaglene, S.C., Morehead, D.T., Cobcroft, J.M., Nichols, P.D., Browne, M.R., and Carson, J. (2006) Combined effects of feeding enriched rotifers and antibiotic addition on performance of striped trumpeter (Latris lineata) larvae. Aquaculture, 251 (2-4). pp. 456-471.

Bureau, Dominique P., Hua, Katheline, and Cho, C. Young (2006) Effect of feeding level on growth and nutrient deposition in rainbow trout (Oncorhynchus mykiss Walbaum) growing from 150 to 600g. Aquaculture Research, 37 (11). pp. 1090-1098.

Bransden, M.P., Cobcroft, J.M., Battaglene, S.C., Dunstan, G.A., Nichols, P.D., and Bell, J.G. (2004) Dietary arachidonic acid alters tissue fatty acid profile, whole body eicosanoid production and resistance to hypersaline challenge in larvae of the temperate marine fish, striped trumpeter (Latris lineata). Fish Physiology and Biochemistry, 30 (3-4). pp. 241-256.

Bransden, M.P., Dunstan, G.A., Battaglene, S.C., Cobcroft, J.M., Morehead, D.T., Kolkovski, S., and Nichols, P.D. (2004) Influences of dietary n-3 long-chain PUFA on body concentrations of 20 : 5n-3, 22 : 5n-3, and 22 : 6n-3 in the larvae of a marine teleost fish from Australian waters, the striped trumpeter (Latris lineata). Lipids, 39 (3). pp. 215-222.

Barlow, Christopher, and Gregg, B.A. (1991) Use of circuli spacing on scales to discriminate hatchery and wild barramundi, Lates calcarifer (Bloch). Aquaculture and Fisheries Management, 22 (4). pp. 491-498.

C

Castanho, S., Califano, G., Soares, F., Costa, R., Mata, L., Pousão-Ferreira, P., and Ribeiro, L. (2017) The effect of live feeds bathed with the red seaweed Asparagopsis armata on the survival, growth and physiology status of Sparus aurata larvae. Fish Physiology and Biochemistry, 43 (4). pp. 1043-1054.

Collins, Geoffrey M. (2016) Phenotypic drivers of hypoxia tolerance in a tropical diadromous fish (Lates calcarifer). PhD thesis, James Cook University.

Collins, Geoffrey Mark, Clark, Timothy Darren, and Carton, Alexander Guy (2016) Physiological plasticity v. inter-population variability: understanding drivers of hypoxia tolerance in a tropical estuarine fish. Marine and Freshwater Research, 67 (10). pp. 1575-1582.

Cameron, Leo, Baumgartner, Lee, Butler, Gavin, Burcher, Daniel, and Lou, Dong-chun (2016) Using otolith microchemistry to differentiate between stocked and unstocked Australian bass (Percalates novemaculeata). Fisheries Research, 183. pp. 86-91.

Chotnipat, Soranot, Miller, Terrence L., Knuckey, Richard M., and Hutson, Kate S. (2015) Molecular and morphological evidence for the widespread distribution of Laticola paralatesi infecting wild and farmed Lates calcarifer in Australia. Diseases of Aquatic Organisms, 113 (3). pp. 195-205.

Carton, Guy, Pirozzi, Igor, Jones, Ben, and Smullen, Richard (2015) Adding flavour complexity to farmed barramundi. Global Aquaculture Advocate , 18 (5). pp. 80-81.

Carton, Alexander G., and Jones, Ben (2014) Post-harvest quality in farmed Lates calcarifer. In: Jerry, Dean R., (ed.) Biology and Culture of Asian Seabass Lates Calcarifer. CRC Press, Boca Raton, FL, USA, pp. 229-257.

Cobcroft, Jennifer M., and Battaglene, Stephen C. (2013) Skeletal malformations in Australian marine finfish hatcheries. Aquaculture, 396. pp. 51-58.

Chowdhury, M.A. Kabir, Siddiqui, Sohail, Hua, Katheline, and Bureau, Dominique P. (2013) Bioenergetics-based factorial model to determine feed requirement and waste output of tilapia produced under commercial conditions. Aquaculture, 410-411. pp. 138-147.

Collins, Geoffrey M., Clark, Timothy D., Rummer, Jodie L., and Carton, Alexander G. (2013) Hypoxia tolerance is conserved across genetically distinct sub-populations of an iconic, tropical Australian teleost (Lates calcarifer). Conservation Physiology, 1 (1). pp. 1-9.

Cobcroft, Jennifer M., Shu-Chien, Alexander Chong, Kuah, Meng-Kiat, Jaya-Ram, Annette, and Battaglene, Stephen C. (2012) The effects of tank colour, live food enrichment and greenwater on the early onset of jaw malformation in striped trumpeter larvae. Aquaculture, 356. pp. 61-72.

Carl, Christina, Guenther, Jana, and Magne Sunde, Leif (2011) Larval release and attachment modes of the hydroid Ectopleura larynx on aquaculture nets in Norway. Aquaculture Research, 42 (7). pp. 1056-1060.

Craven, Andrea (2010) A life submerged in sound: determining if aquaculture sounds induce stress in fish. Masters (Research) thesis, James Cook University.

Catalano, Sarah R., and Hutson, Kate S. (2010) Harmful parasitic crustaceans infecting wild arripids: A potential threat to southern Australian finfish aquaculture. Aquaculture, 303 (1-4). pp. 101-104.

Cobcroft, Jennifer M., and Battaglene, Stephen C. (2009) Jaw malformation in striped trumpeter Latris lineata larvae linked to walling behaviour and tank colour. Aquaculture, 289 (3-4). pp. 274-282.

Carton, Alexander G. (2005) The impact of light intensity and algal-induced turbidity on first-feeding Seriola lalandi larvae. Aquaculture Research, 36 (16). pp. 1588-1594.

Cobcroft, Jennifer M., Pankhurst, Patricia M., Poortenaar, Carolyn, Hickman, Bob, and Tait, Mike (2004) Jaw malformation in cultured yellowtail kingfish (Seriola lalandi) larvae. New Zealand Journal of Marine and Freshwater Research, 38 (1). pp. 67-71.

Cobcroft, J.M., and Pankhurst, P.M. (2003) Sensory organ development in cultured striped trumpeter larvae Latris lineata: implications for feeding behaviour. Marine and Freshwater Research, 54 (5). pp. 669-682.

Cobcroft, J.M., Pankhurst, P.M., Sadler, J., and Hart, P.R. (2001) Jaw development and malformation in cultured striped trumpeter Latris lineata. Aquaculture, 199 (3-4). pp. 267-282.

Cobcroft, J.M., Pankhurst, P.M., Hart, P.R., and Battalene, S.C. (2001) The effects of light intensity and algae-induced turbidity on feeding behaviour of larval striped trumpeter. Journal of Fish Biology, 59 (5). pp. 1181-1197.

Chang, Marshall C. (2000) Improvement of culture techniques for the seahorse Hippocampus sp. Masters (Research) thesis, James Cook University.

Cowden, Kenneth Lawrence (1995) Induced spawning and culture of yellowfin bream, Acanthopagrus australis (Günther, 1859) and mangrove jack, Lutjanus argentimaculatus (Forsskål, 1775). PhD thesis, James Cook University.

D

do Prado, Fernanda Dotti, Vera, Manuel, Hermida, Miguel, Bouza, Carmen, Pardo, Belén G., Vilas, Román, Blanco, Andrés, Fernández, Carlos, Maroso, Francesco, Maes, Gregory E., Turan, Cemal, Volckaert, Filip A.M., Taggart, John B., Carr, Adrian, Ogden, Rob, Nielsen, Einar Eg, Aquatrace, Consortium, and Martínez, Paulino (2018) Parallel evolution and adaptation to environmental factors in a marine flatfish: implications for fisheries and aquaculture management of the turbot (Scophthalmus maximus). Evolutionary Applications, 11 (8). pp. 1322-1341.

Domingos, Jose A., Budd, Alyssa M., Banh, Quyen Q., Goldsbury, Julie A., Zenger, Kyall R., and Jerry, Dean R. (2018) Sex-specific dmrt1 and cyp19a1 methylation and alternative splicing in gonads of the protandrous hermaphrodite barramundi. PLoS ONE, 13 (9). e0204182.

Domingos, Jose A., Zenger, Kyall R., and Jerry, Dean R. (2015) Whole-genome shotgun sequence assembly enables rapid gene characterization in the tropical fish barramundi, Lates calcarifer. Animal Genetics, 46 (4). pp. 468-469.

Diopere, Eveline, Maes, Gregory E., Komen, Hans, Volckaert, Filip A.M., and Groenen, Martien A.M. (2014) A genetic linkage map of sole (Solea solea): a tool for evolutionary and comparative analyses of exploited (flat) fishes. PLoS ONE, 9 (12). e115040. pp. 1-16.

Domingos, Jose A.S. (2014) Filling in the gaps impeding the instigation of selective breeding programs in barramundi Lates calcarifer: fate of genetic diversity through to harvest, estimation of genetic parameters and early prediction of family growth based on cellular processes. PhD thesis, James Cook University.

De Jesus-Ayson, Evelyn Grace, Ayson, Felix G., and Thepot, Valentin (2014) Early development and seed production of Asian seabass, Lates calcarifer. In: Jerry, Dean R., (ed.) Biology and Culture of Asian Seabass Lates Calcarifer. CRC Press, Boca Raton, FL, USA, pp. 16-30.

Domingos, Jose A., Smith-Keune, Carolyn, Harrison, Paul, and Jerry, Dean R. (2014) Early prediction of long-term family growth performance based on cellular processes: a tool to expedite the establishment of superior foundation broodstock in breeding programs. Aquaculture, 428-429. pp. 88-96.

Domingos, Jose A., Smith-Keune, Carolyn, and Jerry, Dean R. (2014) Fate of genetic diversity within and between generations and implications for DNA parentage analysis in selective breeding of mass spawners: a case study of commercially farmed barramundi, Lates calcarifer. Aquaculture, 424-425. pp. 174-182.

Doubleday, Zoë A., Clarke, Steven M., Li, Xiaoxu, Pecl, Gretta T., Ward, Tim M., Battaglene, Stephen, Frusher, Stewart, Gibbs, Philip J., Hobday, Alistair J., Hutchinson, Neil, Jennings, Sarah M., and Stoklosa, Richard (2013) Assessing the risk of climate change to aquaculture: a case study from south-east Australia. Aquaculture Environment Interactions , 3 (2). pp. 163-175.

de Santis, Christian, B. Gomes, Giana, and Jerry, Dean R. (2012) Abundance of myostatin gene transcripts and their correlation with muscle hypertrophy during the development of barramundi, Lates calcarifer. Comparative Biochemistry and Physiology-Part B: biochemistry & molecular biology, 163 (1). pp. 101-107.

De Santis, Christian, Wade, Nicholas M., Jerry, Dean R., Preston, Nigel P., Glencross, Brett D., and Sellars, Melony J. (2011) Growing backwards: an inverted role for the shrimp ortholog of vertebrate myostatin and GDF11. Journal of Experimental Biology, 214 (16). pp. 2671-2677.

De Santis, Christian, Smith-Keune, Carolyn, and Jerry, Dean R. (2011) Normalizing RT-qPCR data: are we getting the right answers? An appraisal of normalization approaches and internal reference genes from a case study in the Finfish Lates calcarifer. Marine Biotechnology, 13 (2). pp. 170-180.

De Santis, C., and Jerry, D.R. (2011) Differential tissue-regulation of myostatin genes in the teleost fish Lates calcarifer in response to fasting. Evidence for functional differentiation. Molecular and Cellular Endocrinology, 335 (2). 158-165 .

Doupé, Robert G., Schaffer, Jason, Knott, Matthew J., and Burrows, Damien W. (2009) How might an exotic fish disrupt spawning success in a sympatric native species? Marine and Freshwater Research, 60 (5). pp. 379-383.

Doupé, R.G., Knott, M.J., Schaffer, J., and Burrows, D.W. (2009) Investigational piscivory of some juvenile Australian freshwater fishes by the introduced Mozambique tilapia Oreochromis mossambicus. Journal of Fish Biology, 74 (10). pp. 2386-2400.

Doupe, R.G. (2007) Where are they now? A baseline distributional description of introduced redclaw crayfish Cherax quadricarinatus (von Marens) in the east Kimberley region. Journal of the Royal Society of Western Australia, 90. pp. 215-218.

Doupe, Robert G., Sarre, Gavin A., Partridge, Gavin J. , Lymbery , Alan J., and Jenkins, Greg I. (2005) What are the prospects for black bream Acanthopagrus butcheri (Munro) aquaculture in salt-affected inland Australia? Aquaculture Research, 36 (14). pp. 1345-1355.

Doupe, Robert G., and Lymbery, Alan J. (2005) Environmental risks associated with beneficial end uses of mine lakes in southwestern Australia. Mine Water and the Environment, 24 (3). pp. 134-138.

Doupe, Robert G., and Lymbery, Alan J. (2005) Additive genetic and other sources of variation in growth traits of juvenile black bream Acanthopagrus butcheri. Aquaculture Research, 36 (7). pp. 621-626.

Doupe, Robert G., and Lymbery, Alan J. (2005) Genetic covariation in production traits of sub-adult black bream Acanthopagrus butcheri after grow-out. Aquaculture Research, 36 (11). pp. 1128-1132.

Doupe, Robert G., Morgan, David L., and Gill, Howard S. (2005) Prospects for a restorative fishery enhancement of Lake Kununurra: a high-level tropical impoundment on the Ord River, Western Australia. Pacific Conservation Biology, 11 (2). pp. 136-146.

Doupe, R.G., Morgan, D.L., Gill, H.S., and Rowland, A.J. (2004) Introduction of redclaw crayfish Cherax quadricarinatus (von Martens)to Lake Kununurra, Ord River, Western Australia: prospects for a ‘yabby’ in the Kimberley. Journal of the Royal Society of Western Australia, 87 (4). pp. 187-191.

Doupe, Robert G., and Lymbery, Alan J. (2004) Indicators of genetic variation for feed conversion efficiency in black bream. Aquaculture Research, 35 (14). pp. 1305-1309.

Doupe, R.G., Lymbery, A.J., Wong, S, and Hobbs, R.P. (2003) Larval anisakid infections of some tropical fish species from north-west Australia. Journal of Helminthology, 77 (4). pp. 363-365.

Doupe, Robert G., and Lymbery, Alan J. (2003) Toward the genetic improvement of feed conversion efficiency in fish. Journal of the World Aquaculture Society, 34 (3). pp. 245-254.

Doupe, R.G., Partridge, G.J., and Lymbery, A J (2003) Visible implant fluorescent elastomer tags as pedigree markers for applied aquaculture: an evaluation using black bream Acanthopagrus butcheri. Aquaculture Research, 34 (8). pp. 681-683.

Doupe, R.G., Lymbery, A.J., and Greeff, J. (2003) Genetic variation in the growth traits of straight-bred and crossbred black bream (Acanthopagrus butcheri Munro) at 90 days of age. Aquaculture Research, 34. pp. 1297-1301.

Doupe, Robert G., Lymbery, Alan J., and Starcevich, Mark R. (2003) Rethinking the land: the development of inland saline aquaculture in Western Australia. International Journal of Agricultural Sustainability, 1 (1). pp. 30-37.

E

Eriksen, Marit Skog, Poppe, Trygve T., McCormick, Mark, Damsgard, Børge, Salte, Ragnar, Braastad, Bjarne O., and Bakken, Morten (2015) Simulated maternal pre-spawning stress affects offspring's attributes in farmed Atlantic salmon Salmo salar (Linnaeus, 1758). Aquaculture Research, 46 (6). pp. 1480-1489.

Edmunds, Richard C., Van Herwerden, Lynne, and Fulton, Christopher J. (2010) Population-specific locomotor phenotypes are displayed by barramundi, Lates calcarifer, in response to thermal stress. Canadian Journal of Fisheries and Aquatic Sciences, 67 (7). pp. 1068-1074.

Edmunds, Richard C., Hillersøy, Grethe, Momigliano, Paolo, and Van Herwerden, Lynne (2009) Classic approach revitalizes genomics: complete characterization of a candidate gene for thermal adaptation in two coral reef fishes. Marine Genomics, 2 (3-4). pp. 215-222.

Edmunds, Richard C. (2009) Evidence for thermal adaptation among geographically, genetically and thermally distinct populations of the Australian barramundi, Lates calcarifer (Bloch 1790): a multi-level approach. PhD thesis, James Cook University.

Edmunds, Richard C., van Herwerden, Lynne, Smith-Keune, Carolyn, and Jerry, Dean R. (2009) Comparative characterization of a temperature responsive gene (lactate dehydrogenase-B, ldh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus. International Journal of Biological Sciences, 5 (6). pp. 558-569.

F

Figueiredo, Joana, Lin, Junda, Anto, Justin, and Narciso, Luís (2012) The consumption of DHA during embryogenesis as an indicative of the need to supply DHA during early larval development: a review. Journal of Aquaculture Research and Development, 3 (5). 140. pp. 1-7.

Fraser, M.R., and de Nys, R. (2011) A quantitative determination of deformities in barramundi (Lates calcarifer; Bloch) fed a vitamin deficient diet. Aquaculture Nutrition, 17 (3). pp. 235-243.

Fielder, D. Stewart, Allan, Geoff L., and Pankhurst, Patricia M. (2008) Comparison of two environmental regimes for culture of Australian snapper, Pagrus auratus, larvae in commercial-scale tanks. Journal of the World Aquaculture Society, 39 (3). pp. 364-374.

Foyle, Leo (2005) Fin fish farming: significant diseases and trends. In: Proceedings of the Fish Vaccine Training Meeting for Assessors of Competent Authorities of the European Economic Area. pp. 5-7. From: Proceedings of the Fish Vaccine Training Meeting for Assessors of Competent Authorities of the European Economic Area, 21-22 September 2005, Dublin, Ireland.

G

Gomes, Giana Bastos, Hutson, Kate S., Domingos, Jose A., Infante Villamil, Sandra, Huerlimann, Roger, Miller, Terrence L., and Jerry, Dean (2019) Parasitic protozoan interactions with bacterial microbiome in a tropical fish farm. Aquaculture, 502. pp. 196-201.

Genodepa, Jerome G. (2015) Digestive enzyme dynamics during early life stages of the mud crab, Scylla serrata and the spiny lobster, Panulirus ornatus. PhD thesis, James Cook University.

Gamble, S., Carton, A.G., and Pirozzi, I. (2014) Open-top static respirometry is a reliable method to determine the routine metabolic rate of barramundi, Lates calcarifer. Marine and Freshwater Behaviour and Physiology, 47 (1). pp. 19-28.

Geraylou, Zahra, Souffreau, Caroline, Rurangwa, Eugene, Maes, Gregory E., Spanier, Katina I., Courtin, Christophe M., Delcour, Jan A., Buyse, Johan, and Ollevier, Frans (2013) Prebiotic effects of arabinoxylan oligosaccharides on juvenile Siberian sturgeon (Acipenser baerii) with emphasis on the modulation of the gut microbiota using 454 pyrosequencing. FEMS Microbiology Ecology, 86 (2). pp. 357-371.

Graham, Peter, Nash, Warwick, Vira, Havini, and Zeng, Chaoshu (2012) Promising Indigenous Fish Species and Bioremediation for Barramundi Aquaculture in Northern Australia. Report. Australian Centre for International Agricultural Research (ACIAR), Canberrra, ACT.

Guenther, Jana, Carl, Christina, and Sunde, Leif Magne (2009) The effects of colour and copper on the settlement of the hydroid Ectopleura larynx on aquaculture nets in Norway. Aquaculture, 292 (3-4). pp. 252-255.

Guy, Jeffrey A., Jerry, Dean R., and Rowland, Stuart J. (2009) Heterosis in fingerlings from a diallel cross between two wild strains of silver perch (Bidyanus bidyanus). Aquaculture Research, 40 (11). pp. 1291-1300.

Gutierrez, J., Navarro, I., Planas, J.V., Monserrat, N., Rojas, P., Castillo, J., Chystiakova, O.V., Gabillard, J.C., Smith, A., Chan, S.J., and Leibush, N.B. (2006) Insulin and IGF receptors in fish. In: Reinecke, Manfred, Zaccone, Giacomo, and Kapoor, B.G., (eds.) Fish Endocrinology. Science Publishers, Enfield, New Hampshire, USA, pp. 131-163.

Gamage, Kumudu Radampola (2001) The effect of nutrition on reproductive parameters in male barramundi, Lates calcarifer (Bloch). PhD thesis, James Cook University.

H

Hua, Katheline, Suwendi, Erwin, and Bureau, Dominique P. (2019) Effect of body weight on lysine utilization efficiency in Nile Tilapia (Oreochromis niloticus). Aquaculture. (In Press)

Holopainen, Riikka, Subramaniam, Kuttichantran, Steckler, Natalie K., Claytor, Sieara C., Ariel, Ellen, and Waltzek, Thomas B. (2018) Genomic sequence of a ranavirus isolated from pike-perch Sander lucioperca. Genome Announcements, 7 (1). e01295-16.

Hutson, Kate, Cable, Joanne, Grutter, Alexandra S., Paziewska-Harris, Anna, and Barber, Iain (2018) Aquatic parasite cultures and their applications. Trends in Parasitology, 34 (12). pp. 1082-1096.

Huerlimann, Roger, Wade, Nicholas M., Gordon, Lavinia, Montenegro, Juan D., Goodall, Jake, McWilliam, Sean, Tinning, Matthew, Siemering, Kirby, Giardina, Erika, Donovan, Dallas, Sellars, Melony J., Cowley, Jeff A., Condon, Kelly, Coman, Greg J., Khatkar, Mehar S., Raadsma, Herman W., Maes, Gregory E., Zenger, Kyall R., and Jerry, Dean R. (2018) De novo assembly, characterization, functional annotation and expression patterns of the black tiger shrimp (Penaeus monodon) transcriptome. Scientific Reports, 8. 13553.

Hua, Katheline, Koppe, Wolfgang, and Fontanillas, Ramon (2018) Effects of dietary protein and lipid levels on growth, body composition and nutrient utilization of Channa striata. Aquaculture. (In Press)

Hick, Paul, Ariel, Ellen, and Whittington, Richard (2017) Epizootic hematopoietic necrosis and European catfish virus. In: Woo, Patrick T.K., and Cipriano, Rocco C., (eds.) Fish Viruses and Bacteria: pathobiology and protection. CABI, Wallingford, UK, pp. 38-50.

Hillen, J.E.J., Coscia, I., Vandeputte, M., Herten, K., Hellemans, B., Maroso, F., Vergnet, A., Allal, F., Maes, Gregory, and Volckaert, F.A.M. (2017) Estimates of genetic variability and inbreeding in experimentally selected populations of European sea bass. Aquaculture, 479. pp. 742-749.

Hardy, P.-Y., Bene, C., Doyen, L., and Mills, D. (2017) Strengthening the resilience of small-scale fisheries: a modeling approach to explore the use of in-shore pelagic resources in Melanesia. Environmental Modelling and Software, 96. pp. 291-304.

Herrera, Marcela, Clarke, Tayler M., Naranjo-Elizondo, Beatriz, Espinoza, Mario, and Wehrtmann, Ingo S. (2016) Size at maturity of the Pacific bearded brotula (Ophidiidae: Brotula clarkae): a commercially exploited species in the Pacific of Costa Rica. Latin American Journal Of Aquatic Research, 44 (3). pp. 657-661.

Hilder, Pollyanna I., Cobcroft, Jennifer M., and Battaglene, Stephen C. (2015) The first-feeding response of larval southern bluefin tuna, Thunnus maccoyii (Castelnau, 1872), and yellowtail kingfish, Seriola lalandi (Valenciennes, 1833), to prey density, prey size and larval density. Aquaculture Research, 46 (11). pp. 2736-2751.

Hutson, Kate S. (2014) Infectious diseases of Asian seabass and health management. In: Jerry, Dean R., (ed.) Biology and Culture of Asian Seabass Lates Calcarifer. CRC Press, Boca Raton, FL, USA, pp. 102-136.

Hua, Katheline (2013) Estimating maintenance amino acids requirements of fish through a nonlinear mixed modelling approach. Aquaculture Research, 44 (4). pp. 542-553.

Hua, Katheline (2013) Investigating the appropriate mode of expressing lysine requirement of fish through non-linear mixed model analysis and multilevel analysis. British Journal of Nutrition, 109. pp. 1013-1021.

Hutson, Kate S., Mata, Leonardo, Paul, Nicholas A., and De Nys, Rocky (2012) Seaweed extracts as a natural control against the monogenean ectoparasite, Neobenedenia sp., infecting farmed barramundi (Lates calcarifer). International Journal for Parasitology, 42 (13-14). pp. 1135-1141.

Hua, Katheline, and Bureau, Dominique P. (2012) Exploring the possibility of quantifying the effects of plant protein ingredients in fish feeds using meta-analysis and nutritional model simulation-based approaches. Aquaculture, 356-357. pp. 284-301.

Holopainen, Riikka, Honkanen, Jarno, Bang Jensen, Britt, Ariel, Ellen, and Tapiovaara, Hannele (2011) Quantitation of ranaviruses in cell culture and tissue samples. Journal of Virological Methods, 171 (1). pp. 225-233.

Hoogenboom, Mia, Armstrong, John D., Miles, Mike S., Burton, Tim, Groothuis, Ton G. G., and Metcalfe, Neil B. (2011) Implantation of cocoa butter reduces egg and hatchling size in Salmo trutta. Journal of Fish Biology, 79 (3). pp. 587-596.

Hua, K., Birkett, S., De Lange, C.F.M., and Bureau, D.P. (2010) Adaptation of a non-ruminant nutrient-based growth model to rainbow trout (Oncorhynchus mykiss Walbaum). Journal of Agricultural Science, 148 (1). pp. 17-29.

Hua, K., and Bureau, D.P. (2010) Quantification of differences in digestibility of phosphorus among cyprinids, cichlids, and salmonids through a mathematical modelling approach. Aquaculture, 308 (3-4). pp. 152-158.

Hua, Katheline, and Bureau, Dominique P. (2009) Development of a model to estimate digestible lipid content of salmonid fish feeds. Aquaculture, 286 (3-4). pp. 271-276.

Hua, Katheline, and Bureau, Dominique P. (2009) A mathematical model to explain variations in estimates of starch digestibility and predict digestible starch content of salmonid fish feeds. Aquaculture, 294 (3-4). pp. 282-287.

Hua, Katheline, de lange, Cornelis F.M., Niimi, Arthur J., Cole, Gordon, Moccia, Richard D., Fan, Ming Z., and Bureau, Dominique P. (2008) A factorial model to predict phosphorus waste output of rainbow trout (Oncorhynchus mykiss). Aquaculture Research, 39 (10). pp. 1059-1068.

Hutson, K.S., Ernst, I., and Whittington, I.D. (2007) Risk assessment for metazoan parasites of yellowtail kingfish Seriola lalandi (Perciformes: Carangidae) in South Australian sea-cage aquaculture. Aquaculture, 271 (1-4). pp. 85-99.

Hutson, Kate S., and Whittington, Ian D. (2006) Paradeontacylix godfreyi n. sp. (Digenea: Sanguinicolidae) from the heart of wild Seriola lalandi (Perciformes: Carangidae)in southern Australia. Zootaxa, 1151. pp. 55-68.

Hua, K., and Bureau, D.P. (2006) Modelling digestible phosphorus content of salmonid fish feeds. Aquaculture, 254 (1-4). pp. 455-465.

Herbert, Brett (2005) Feeding and growth of golden perch (Macquaria ambigua), and assessment of its potential for aquaculture. PhD thesis, James Cook University.

Hua, Katheline, Liu, Linjuan, and Bureau, Dominique P. (2005) Determination of phosphorus fractions in animal protein ingredients. Journal of Agricultural and Food Chemistry, 53 (5). pp. 1571-1574.

J

Jones, Ben C. (2016) Addressing quality deficits in farmed barramundi: optimising flavour and quality through pre-harvest practices. PhD thesis, James Cook University.

Jones, B., Smullen, R., and Carton, A.G. (2016) Flavour enhancement of freshwater farmed barramundi (Lates calcarifer), through dietary enrichment with cultivated sea lettuce, Ulva ohnoi. Aquaculture, 454. pp. 192-198.

Jones, Ben C., and Carton, Alexander G. (2015) Effects of dietary enrichment with alpha-tocopherol acetate and post-harvest filleting on lipid oxidation and flesh quality of tropical farmed barramundi (Lates calcarifer). Aquaculture, 448. pp. 280-287.

Jerry, Dean R. (2014) Biology and Culture of Asian Seabass Lates calcarifer. CRC Press, Boca Raton, FL, USA.

Jerry, Dean R., and Smith-Keune, Carolyn (2014) The genetics of Asian seabass. In: Jerry, Dean R., (ed.) Biology and Culture of Asian Seabass Lates Calcarifer. CRC Press, Boca Raton, FL, USA, pp. 137-177.

Jones, B., Fuller, S., and Carton, A.G. (2013) Earthy-muddy tainting of cultured barramundi linked to geosmin in tropical northern Australia. Aquaculture Environment Interactions , 3 (2). pp. 117-124.

Jerry R., Dean, Smith-Keune, Carolyn, Hodgson, Lauren, Pirozzi, Igor, Carton, A. Guy, Hutson, Kate S., Brazenor, Alexander K., Trujillo Gonzalez, Alejandro, Gamble, Stephen, Collins, Geoff, and Vanderwal, Jeremy (2013) Vulnerability of an Iconic Australian Finfish (Barramundi - Lates calcarifer) and Aligned Industries to Climate Change across Tropical Australia. Report. Fisheries Research and Development Corporation, Douglas, QLD, Australia.

Jensen, Britt Bang, Ersboll, Annette Kjaer, and Ariel, Ellen (2009) Susceptibility of pike Esox lucius to a panel of Ranavirus isolates. Diseases of Aquatic Organisms, 83 (3). pp. 169-179.

K

Konovalov, D.A., Domingos, J.A., White, R.D., and Jerry, D.R. (2018) Automatic scaling of fish images. In: Proceedings of the 2nd International Conference on Advances in Image Processing. pp. 48-53. From: ICAIP 18: 2nd International Conference on Advances in Image Processing, 16-18 June 2018, Chengdu, China.

Konovalov, Dmitry A., Saleh, Alzayat, Domingos, Jose A., White, Ron D., and Jerry, Dean R. (2018) Estimating mass of harvested Asian seabass Lates calcarifer from images. World Journal of Engineering and Technology, 6 (3). pp. 15-23.

Konovalov, D.A., Domingos, J.A., Bajema, C., White, R.D., and Jerry, D.R. (2017) Ruler detection for automatic scaling of fish images. In: Proceedings of the International Conference on Advances in Image Processing. pp. 90-95. From: ICAIP 2017: International Conference on Advances in Image Processing, 25-27 August 2017, Bangkok, Thailand.

Kvingedal, Renate, Evans, Brad S., Lind, Curtis E., Taylor, Joseph J.U., Dupont-Nivet, Mathilde, and Jerry, Dean R. (2010) Population and family growth response to different rearing location, heritability estimates and genotype×environment interaction in the silver-lip pearl oyster (Pinctada maxima). Aquaculture, 304 (1-4). pp. 1-6.

Kaunda, Emmanuel K.W., Anderson, Jessica L., Kang'ombe, Jeremiah, and Jere, Wilson W.L. (2007) Effect of clear plastic pond sheeting on water temperatures and growth of Tilapia rendalli in earthen ponds. Aquaculture Research, 38. pp. 1113-1116.

L

Li, Ming, Wang, Runqiu, Gomes, Giana Bastos, Zou, Hong, Li, Wen-xiang, Wu, Shan-gong, Wang, Gui-tang, and Ponce-Gordo, Francisco (2018) Epidemiology and identification of two species of Chilodonella affecting farmed fishes in China. Veterinary Parasitology, 264. pp. 8-17.

Loughnan, Shannon R., Smith-Keune, Carolyn, Jerry, Dean R., Beheregaray, Luciano B., and Robinson, Nicholas A. (2016) Genetic diversity and relatedness estimates for captive barramundi (Lates calcarifer, Bloch) broodstock informs efforts to form a base population for selective breeding. Aquaculture Research, 47 (11). pp. 3570-3584.

Lédée, Elodie J.I., Heupel, Michelle, Tobin, Andrew J., Knip, Danielle M., and Simpfendorfer, Colin A. (2015) A comparison between traditional kernel-based methods and network analysis: an example from two nearshore shark species. Animal Behaviour, 103. pp. 17-28.

La Fauce, K., Ariel, E., Munns, S., Rush, C., and Owens, L. (2012) Influence of temperature and exposure time on the infectivity of Bohle iridovirus, a ranavirus. Aquaculture, 354-355. pp. 64-67.

Lymbery, Alan J., Doupé, Robert G., Bennett, Thomas, and Starcevich, Mark R. (2006) Efficacy of a subsurface-flow wetland using the estuarine sedge Juncus kraussii to treat effluent from inland saline aquaculture. Aquacultural Engineering, 34. pp. 1-7.

Lever, C., Lymbery, A.J., and Doupe, R.G. (2004) Preliminary comparisons of yield and profit achieved from different rainbow trout (Oncorhynchus mykiss) production systems in inland Western Australia. Journal of Applied Aquaculture, 16 (1 and 2). pp. 63-74.

Lymbery, A.J., Doupe, R.G., and Pettit, N. E. (2003) Effects of salinisation on riparian plant communities in experimental catchments on the Collie River, Western Australia. Australian Journal of Botany, 51 (6). pp. 667-672.

M

Moorhead, Jonathan Allyn (2017) Broodstock management, development of rearing systems, and feeding regimes for larvae of the forktail blenny, Meiacanthus atrodorsalis. PhD thesis, James Cook University.

Moorhead, Jonathan A., and Zeng, Chaoshu (2017) Establishing larval feeding regimens for the Forktail Blenny Meiacanthus atrodorsalis (Gunther, 1877): effects of Artemia strain, time of prey switch and co-feeding period. Aquaculture Research, 48 (8). pp. 4321-4333.

Moorhead, Jonathan A., and Zeng, Chaoshu (2017) Weaning captive bred forktail blenny, Meiacanthus atrodorsalis, to a commercial formulated diet: optimizing timing, feeding frequency and ration. Aquaculture, 473. pp. 259-265.

Munday, Philip L., Watson, Sue-Ann, Parsons, Darren M., King, Alicia, Barr, Neill G., McLeod, Ian M., Allan, Bridie J.M., and Pether, Steve M.J. (2016) Effects of elevated CO2 on early life history development of the yellowtail kingfish, Seriola lalandi, a large pelagic fish. ICES Journal of Marine Science, 73 (3). pp. 641-649.

Militz, Thane A., and Hutson, Kate S. (2015) Beyond symbiosis: cleaner shrimp clean up in culture. PLoS ONE, 10 (2). e0117723. pp. 1-11.

Militz, T.A., Southgate, P.C., Carton, A.G., and Hutson, K.S. (2014) Efficacy of garlic (Allium sativum) extract applied as a therapeutic immersion treatment for Neobenedenia sp. management in aquaculture. Journal of Fish Diseases, 37 (5). pp. 451-461.

Mata, Leonardo, Wright, Emily, Owens, Leigh, Paul, Nicholas, and de Nys, Rocky (2013) Water-soluble natural products from seaweed have limited potential in controlling bacterial pathogens in fish aquaculture. Journal of Applied Phycology, 25 (6). pp. 1963-1973.

Militz, Thane A., Southgate, Paul C., Carton, Alexander G., and Hutson, Kate S. (2013) Dietary supplementation of garlic (Allium sativum) to prevent monogenean infection in aquaculture. Aquaculture, 408-409. pp. 95-99.

Miller, Penny A., Fitch, Alison J., Gardner, Michael, Hutson, Kate S., and Mair, Graham (2011) Genetic population structure of Yellowtail Kingfish (Seriola lalandi) in temperate Australasian waters inferred from microsatellite markers and mitochondrial DNA. Aquaculture, 319 (3-4). pp. 328-336.

Moorhead, Jonathan A., and Zeng, Chaoshu (2011) Breeding of the forktail blenny Meiacanthus atrodorsalis: broodstock management and larval rearing. Aquaculture, 318 (1-2). pp. 248-252.

McGinty, Erin L., Zenger, Kyall R., Taylor, Joseph U.U., Evans, Brad S., and Jerry, Dean R. (2011) Diagnostic genetic markers unravel the interplay between host and donor oyster contribution in cultured pearl formation. Aquaculture, 316 (1-4). pp. 20-24.

McGinty, Erin L., Evans, Brad S., Taylor, Joseph U.U., and Jerry, Dean R. (2010) Xenografts and pearl production in two pearl oyster species, P. maxima and P. margaritifera: effect on pearl quality and a key to understanding genetic contribution. Aquaculture, 302 (3-4). pp. 175-181.

Moorhead, Jonathan A., and Zeng, Chaoshu (2010) Development of captive breeding techniques for marine ornamental fish: a review. Reviews in Fisheries Science, 18 (4). pp. 315-343.

McLoughlin, M.F., Graham, D.A., Norris, A., Matthews, D., Foyle, L., Rowley, H.M., Jewhurst, H., MacPhee, J., and Todd, D. (2006) Virological, serological and histopathological evaluation of fish strain susceptibility to experimental infection with salmonid alphavirus. Diseases of Aquatic Organisms, 72 (2). pp. 125-133.

Mendez, E, Smith, Alastair, Figuere-Garutti, M, Navarro, I, Planas, JV, and Gutierrez, J (2001) Receptors for insulin-like growth factor-I (IGF-I) predominate over insulin receptors in skeletal muscle throughout the life cycle of Brown Trout, Salmo trutta. General and Comparative Endocrinology , 122 (2). pp. 148-157.

Matthews, Sue Janet (1997) The regulation of insulin-like growth factors in barramundi, Lates calcarifer. PhD thesis, James Cook University.

N

Nuez-Ortín, Waldo G., Carter, Chris G., Nichols, Peter D., Cooke, Ira R., and Wilson, Richard (2018) Liver proteome response of pre-harvest Atlantic salmon following exposure to elevated temperature. BMC Genomics, 19. 133.

Newman, Stephen J., Wakefield, Corey B., Williams, Ashley, O'Malley, Joseph M., Taylor, Brett M., Nicol, Simon J., Nichols, Ryan S., Hesp, S. Alex, Hall, Norm G., Hill, Nicholas, Ong, Joyce J.L., Andrews, Allen H., Wellingtion, Claire M., Harvey, Euan S., Mous, Peter, Oyafuso, Zack S., Pardee, Cassandra, Bunce, Michael, DiBattista, Joseph D., and Moore, Bradley R. (2017) International workshop on advancing methods to overcome challenges associated with life history and stock assessments of data-poor deep-water snappers and groupers. Marine Policy, 79. pp. 78-83.

Nuez-Ortin, Waldo G., Carter, Chris G., Wilson, Richard, Cooke, Ira R., Amoroso, Gianluca, Cobcroft, Jennifer M., and Nichols, Peter D. (2017) Triploid Atlantic salmon shows similar performance, fatty acid composition and proteome response to diploids during early freshwater rearing. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 22. pp. 67-77.

Nguyen Dinh Quang, Duy, Francis, David S., Pirozzi, Igor, and Southgate, Paul C. (2016) Use of micro-algae concentrates for hatchery culture of sandfish, Holothuria scabra. Aquaculture, 464. pp. 145-152.

Ngo, Diu Thi, Wade, Nicholas, Pirozzi, Igor, and Glencross, Brett D. (2016) Effects of canola meal on growth, feed utilisation, plasma biochemistry, histology of digestive organs and hepatic gene expression of barramundi (Asian seabass; Lates calcarifer). Aquaculture, 464. pp. 95-105.

Nuez Ortin, Waldo, Carter, Chris G., Wilson, Richard, Cooke, Ira, and Nichols, Peter D. (2016) Preliminary validation of a high docosahexaenoic acid (DHA) and -linolenic acid (ALA) dietary oil blend: tissue fatty acid composition and liver proteome response in Atlantic salmon (Salmo salar) smolts. PLoS ONE, 11 (8). e0161513. pp. 1-27.

Ngo, Diu Thi, Pirozzi, Igor, and Glencross, Brett (2015) Digestibility of canola meals in barramundi (Asian seabass; Lates calcarifer). Aquaculture, 435. pp. 442-449.

Ngo, Diu Thi (2014) Evaluation of canola meal as an aquafeed ingredient for barramundi (Asian seabass; Lates calcarifer). Masters (Research) thesis, James Cook University.

Noble, T.H., Smith-Keune, C., and Jerry, D.R. (2014) Genetic investigation of the large-scale escape of a tropical fish, barramundi Lates calcarifer, from a sea-cage facility in northern Australia. Aquaculture Environment Interactions, 5 (2). pp. 173-183.

Negm, Reham K., Cobcroft, Jennifer M., Brown, Malcolm R., Nowak, Barbara F., and Battaglene, Stephen C. (2014) Performance and skeletal abnormality of striped trumpeter Latris lineata larvae and post larvae fed vitamin A enriched Artemia. Aquaculture, 422. pp. 115-123.

Newton, James R., Zenger, Kyall R., and Jerry, Dean R. (2013) Next-generation transcriptome profiling reveals insights into genetic factors contributing to growth differences and temperature adaptation in Australian populations of barramundi (Lates calcarifer). Marine Genomics, 11. pp. 45-52.

Newton, James Raymond (2013) Investigating the genetics of thermal tolerance and adaptation to temperature amongst populations of Australian barramundi (Lates calcarifer). PhD thesis, James Cook University.

Negm, Reham K., Cobcroft, Jennifer M., Brown, Malcolm R., Nowak, Barbara F., and Battaglene, Stephen C. (2013) The effects of dietary vitamin A in rotifers on the performance and skeletal abnormality of striped trumpeter Latris lineata larvae and post larvae. Aquaculture, 404-405. pp. 105-115.

Newton, J.R., De Santis, C., and Jerry, D.R. (2012) The gene expression response of the catadromous perciform barramundi Lates calcarifer to an acute heat stress. Journal of Fish Biology, 81 (1). pp. 81-93.

Newton, James R., Smith-Keune, Carolyn, and Jerry, Dean R. (2010) Thermal tolerance varies in tropical and sub-tropical populations of barramundi (Lates calcarifer) consistent with local adaptation. Aquaculture, 308 (Supplement 1). S128-S132.

Nguyen, Thuy T.T., Davy, F. Brian, Rimmer, Michael A., and De Silva, Sena S. (2009) Use and exchange of genetic resources of emerging species for aquaculture and other purposes. Reviews in Aquaculture, 1 (3-4). pp. 260-274.

Nankervis, L., and Southgate, P.C. (2009) Enzyme and acid treatment of fish meal for incorporation into formulated microbound diets for barramundi (Lates calcarifer) larvae. Aquaculture Nutrition, 15 (2). pp. 135-143.

Norris, A., Foyle, L., and Ratcliff, J. (2008) Heritability of mortality in response to a natural pancreas disease (SPDV) challenge in Atlantic salmon, Salmo salar L., post-smolts on a West of Ireland sea site. Journal of Fish Diseases, 31 (12). pp. 913-920.

O

Olaganathan, Rajee, and Patterson, Jamila (2013) Effect of anthraquinone dyes on the carbohydrate, protein and lipid content in the muscle of Channa punctatus and Cyprinus carpio. International Journal of Pharmaceutical Applications, 4 (1). pp. 11-19.

P

Price, Stephen J., Ariel, Ellen, Maclaine, Alicia, Rosa, Goncalo M., Gray, Matthew J., Brunner, Jesse F., and Garner, Trenton W.J. (2017) From fish to frogs and beyond: impact and host range of emergent ranaviruses. Virology, 511. pp. 272-279.

Paris, Damien B.B.P. (2016) Fertility in adverse environments: correlating sperm quality with fertility in barramundi. In: Australian Barramundi Farmers Association Workshop. From: Australian Barramundi Farmers Association Workshop, 10-13 April 2016, Townsville, QLD, Australia. (Unpublished)

Poppi, D.A., Quinton, V.M., Hua, K., and Bureau, D.P. (2011) Development of a test diet for assessing the bioavailability of arginine in feather meal fed to rainbow trout (Oncorhynchus mykiss). Aquaculture, 314 (1-4). pp. 100-109.

Pirozzi, Igor, Booth, Mark A., and Allan, Geoff L. (2010) A factorial approach to deriving dietary specifications and daily feed intake for mulloway, Argyrosomus japonicus, based on the requirements for digestible protein and energy. Aquaculture, 302 (3-4). pp. 235-242.

Paisley, Larry G., Ariel, Ellen, Lyngstad, Trude, Jónsson, Gísli, Vennerström, Pia, Hellström, Anders, and Østergaard, Peter (2010) An overview of aquaculture in the Nordic countries. Journal of the World Aquaculture Society, 41 (1). pp. 1-17.

Pirozzi, Igor, Booth, Mark A., and Allan, Geoff L. (2010) Protein and energy utilization and the requirements for maintenance in juvenile mulloway (Argyrosomus japonicus). Fish Physiology and Biochemistry, 36 (1). pp. 109-121.

Pirozzi, I., Booth, M.A., and Allan, G.L. (2010) The interactive effects of dietary protein and energy on feed intake, growth and protein utilization of juvenile mulloway (Argyrosomus japonicus). Aquaculture Nutrition, 16 (1). pp. 61-71.

Perna, Colton N., Burrows, Damien, Cappo, Mike, and Pusey, Bradley J. (2009) Floodplain degradation and restoration in Northern Queensland: the response of the Alien Fish Pest Gambusia holbrooki. Ecological Management and Restoration, 10 (3). pp. 241-243.

Partridge, G.J., Jenkins, G.I., Doupe, R.G., De Lestang, S., Ginbey, B.M., and French, D. (2009) Factors affecting mark quality of alizarin complexone-stained otoliths in juvenile black bream Acanthopagrus butcheri and a prescription for dosage. Journal of Fish Biology, 75 (6). pp. 1518-1523.

Pirozzi, Igor, and Booth, Mark A. (2009) The effect of temperature and body weight on the routine metabolic rate and postprandial metabolic response in mulloway, Argyrosomus japonicus. Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 154 (1). pp. 110-118.

Pirozzi, Igor (2009) A factorial approach to defining the dietary protein and energy requirements of mulloway, Argyrosomus japonicus : optimising feed formulations and feeding strategies. PhD thesis, James Cook University.

Pirozzi, Igor, Booth, Mark A, and Pankhurst, Patricia M. (2009) The effect of stocking density and repeated handling on the growth of juvenile mulloway, Argyrosomus japonicus (Temminck & Schlegel 1843). Aquaculture International, 17 (2). pp. 199-205.

Pirozzi, Igor, and Booth, Mark A. (2009) The routine metabolic rate of mulloway (Argyrosomus japonicus: Sciaenidae) and yellowtail kingfish (Seriola lalandi: Carangidae) acclimated to six different temperatures. Comparative Biochemistry and Physiology: Part A, 152 (4). pp. 586-592.

Pankhurst, N.W., Ludke, S.L., King, H.R., and Peter, R.E. (2008) The relationship between acute stress, food intake, endocrine status and life history stage in juvenile farmed Atlantic salmon, Salmo salar. Aquaculture, 275 (1-4). pp. 311-318.

Pankhurst, Patricia M. (2008) Mechanoreception. In: Finn, R.N., and Kapoor, B.G., (eds.) Fish Larval Physiology. Science Publishers, New Hampshire, USA, pp. 305-329.

Pujolar, J.M., Maes, G.E., Vancoillie, C., and Volckaert, F.A.M. (2006) Environmental stress and life-stage dependence on the detection of heterozygosity–fitness correlations in the European eel, Anguilla anguilla. Genome, 49 (11). pp. 1428-1437.

Pujolar, J.M., Maes, G.E., and Volckaert, F.A.M. (2004) Distribution of genetic variation in farmed and natural stocks of European eel. Journal of Fish Biology, 65 (Supplement s1). pp. 333-334.

Partridge, G.J., and Southgate, P.C. (1999) The effect of binder composition on ingestion and assimilation of microbound diets (MBD) by barramundi Lates calcarifer Bloch larvae. Aquaculture Research, 30 (11-12). pp. 879-886.

R

Rasdi, Nadiah W., Qin, Jian G., and Li, Yan (2016) Effects of dietary microalgae on fatty acids and digestive enzymes in copepod Cyclopina kasignete, a potential live food for fish larvae. Aquaculture Research, 47 (10). pp. 3254-3264.

Rodgers, G.G., Tenzing, P., and Clark, T.D. (2016) Experimental methods in aquatic respirometry: the importance of mixing devices and accounting for background respiration. Journal of Fish Biology, 88 (1). pp. 65-80.

Robinson, Nicholas Andrew, Schipp, Glenn, Bosmans, Jérôme, and Jerry, Dean Robert (2010) Modelling selective breeding in protandrous, batch-reared Asian sea bass (Lates calcarifer, Bloch) using walkback selection. Aquaculture Research, 41 (10). e643-e655.

Repullés-Albelda, Aigües, Montero, Francisco E., Holzer, Astrid S., Ogawa, Kazuo, Hutson, Kate S., and Raga, Juan A. (2008) Speciation of the Paradeontacylix spp. (Sanguinicolidae) of Seriola dumerili. Two new species of the genus Paradeontacylix from the Mediterranean. Parasitology International, 57 (3). pp. 405-414.

Raine, J.C., Hua, K., Bureau, D.P., Vijayan, M.M., and Leatherland, J.F. (2007) Influence of ration level and rearing temperature on hepatic GHR1 and 2, and hepatic and intestinal TR alpha and TR beta gene expression in late stages of rainbow trout embryos. Journal of Fish Biology, 71 (1). pp. 148-162.

Rimmer, Michael Albert (1996) Factors affecting survival and growth of larval barramaundi Lates calcarifer (Bloch) in aquaculture, with particular reference to feeding and extensive rearing. PhD thesis, James Cook University of North Queensland.

Rimmer, M.A., Reed, A.W., Levitt, M.S., and Lisle, A.T. (1994) Effects of nutritional enhancement of live food organisms on growth and survival of barramundi, Lates calcarifer (Bloch), larvae. Aquaculture Research, 25 (2). pp. 143-156.

Rimmer, Michael A. (1993) Ectogenic meromixis in a brackish water pond in tropical northern Australia. Journal of Applied Aquaculture, 2 (1). pp. 125-130.

S

Shao, Luchang (2016) Development of larval fish rearing techniques and nutrient requirements for the green mandarin, Synchiropus splendidus: a popular marine ornamental fish. PhD thesis, James Cook University.

Snyder, S., Nadler, L. E., Bayley, J. S., Svendsen, M. B. S., Johansen, J. L., Domenici, P., and Steffensen, J. F. (2016) Effect of closed v. intermittent-flow respirometry on hypoxia tolerance in the shiner perch Cymatogaster aggregata. Journal of Fish Biology, 88 (1). pp. 252-264.

Subramaniam, Kuttichantran, Toffan, Anna, Capellozza, Elisabetta, Steckler, Natalie K., Olesen, Niels J., Ariel, Ellen, and Waltzek, Thomas B. (2016) Genomic sequence of a ranavirus isolated from short-finned eel (Anguilla australis). Genome Announcements, 4 (4). e00843-16. pp. 1-2.

Sharp, Michael, and Lopata, Andreas L. (2014) Muscle proteins in Asian seabass-Parvalbumin's role as a physiological protein and fish allergen. In: Jerry, Dean R., (ed.) Biology and Culture of Asian Seabass Lates Calcarifer. CRC Press, Boca Raton, FL, USA, pp. 293-305.

Stride, M.C., Polkinghorne, A., Miller, T.L., Groff, J.M., LaPatra, S.E., and Nowak, B.F. (2013) Molecular characterization of "Candidatus Parilichlamydia carangidicola," a novel Chlamydia-like epitheliocystis agent in Yellowtail Kingfish, Seriola lalandi (Valenciennes), and the proposal of a new family, "Candidatus Parilichlamydiaceae" fam. nov. (Order Chlamydiales). Applied and Environmental Microbiology, 79 (5). pp. 1590-1597.

Stride, M.C., Polkinghorne, A., Miller, T.L., and Nowak, B.F. (2013) Molecular characterization of "Candidatus Similichlamydia latridicola" gen. nov., sp. nov. (Chlamydiales: "Candidatus Parilichlamydiaceae"), a novel Chlamydia-like epitheliocystis agent in the Striped Trumpeter, Latris lineata (Forster). Applied and Environmental Microbiology, 79 (16). pp. 4914-4920.

Sarker, Pallab Kumer, Bureau, Dominique P., Hua, Katheline, Drew, Murray D., Forster, Ian, Were, Keith, Hicks, Brad, and Vandenberg, Grant W. (2013) Sustainability issues related to feeding salmonids: a Canadian perspective. Reviews in Aquaculture, 5 (4). pp. 199-219.

Schyth, B.D., Ariel, E., Korsholm, H., and Olesen, N.J. (2012) Diagnostic capacity for viral haemorrhagic septicaemia virus (VHSV) infection in rainbow trout (Oncorhynchus mykiss) is greatly increased by combining viral isolation with specific antibody detection. Fish and Shellfish Immunology, 32 (4). pp. 593-597.

Shaddick, Kim, Gilligan, Dean M., Burridge, Christopher P., Jerry, Dean R., Truong, Kiet, and Beheregaray, Luciano B. (2011) Historic divergence with contemporary connectivity in a catadromous fish, the estuary perch (Macquaria colonorum). Canadian Journal of Fisheries and Aquatic Sciences, 68 (2). pp. 304-318.

Smith, Alastair, Chan, Shu Jin, and Gutierrez, Joaquim (2005) Autoradiographic and immunohistochemical localization of insulin-like growth factor-I receptor binding sites in brain of the brown trout, Salmo trutta. General and Comparative Endocrinology , 141 (3). pp. 203-213.

Starcevich, Mark R., Lymbery, Alan J., and Doupe, Robert G. (2003) Potential environmental impacts from farming rainbow trout using inland saline water in Western Australia. Australasian Journal of Environmental Management, 10 (1). pp. 15-24.

T

Taylor-Brown, Alyce, Pillonel, Trestan, Bridle, Andrew, Qi, Weihong, Bachmann, Nathan L., Miller, Terrence L., Greub, Gilbert, Nowak, Barbara, Seth-Smith, Helena M.B., Vaughan, Lloyd, and Polkinghorne, Adam (2017) Culture-independent genomics of a novel chlamydial pathogen of fish provides new insight into host-specific adaptations utilized by these intracellular bacteria. Environmental Microbiology, 19 (5). pp. 1899-1913.

Taillebois, Laura, Dudgeon, Christine, Maher, Safia, Crook, David A., Saunders, Thor M., Barton, Diane P., Taylor, Jonathan A., Welch, David J., Newman, Stephen J., Travers, Michael J., Saunders, Richard J., and Ovenden, Jennifer (2016) Characterization, development and multiplexing of microsatellite markers in three commercially exploited reef fish and their application for stock identification. PeerJ, 4. e2418. pp. 1-18.

Thépot, Valentin, Mangott, Arnold, and Pirozzi, Igor (2016) Rotifers enriched with a mixed algal diet promote survival, growth and development of barramundi larvae, Lates calcarifer (Bloch). Aquaculture Reports, 3. pp. 147-158.

Thépot, Valentin, and Jerry, Dean R. (2015) The effect of temperature on the embryonic development of barramundi, the Australian strain of Lates calcarifer (Bloch) using current hatchery practices. Aquaculture Reports, 2. pp. 132-138.

Trujillo González, Alejandro (2015) Behaviour, histopathology and immunobiology: interactions between the ectoparasite Neobenedenia (Monogenea: Capsalidae) and its host, Lates calcarifer (Perciformes: Latidae). Masters (Research) thesis, James Cook University.

Trujillo-González, A., Johnson, L.K., Constantinoiu, C.C., and Hutson, K.S. (2015) Histopathology associated with haptor attachment of the ectoparasitic monogenean Neobenedenia sp. (Capsalidae) to barramundi, Lates calcarifer (Bloch). Journal of Fish Diseases, 38 (12). pp. 1063-1067.

Tuller, James, De Santis, Christian, and Jerry, Dean R. (2014) Dietary influence of Fucoidan supplementation on growth of Lates calcarifer (Bloch). Aquaculture Research, 45 (4). pp. 749-754.

Todd, Erica, Blair, David, Hamann, Mark, and Jerry, Dean (2011) Twenty-nine microsatellite markers for two Australian freshwater turtles, Elseya albagula and Emydura macquarii krefftii: development from 454-sequence data and utility in related taxa. Conservation Genetics Resources, 3 (3). pp. 449-456.

Tan, Matthew (2008) Water quality and the ornamental aquatic sector. Aquarama Magazine, 5 (10). pp. 8-11.

Tang, Danny, Andrews, Melanie, and Cobcroft, Jennifer (2007) The first Chondracanthid (Copepoda : Cyclopoida) reported from cultured finfish, with a revised key to the species of Chondracanthus. Journal of Parasitology, 93 (4). pp. 788-795.

V

Vaughan, David B., Grutter, Alexandra S., and Hutson, Kate S. (2018) Cleaner shrimp are a sustainable option to treat parasitic disease in farmed fish. Scientific Reports, 8. 13959. pp. 1-10.

Vaughan, David B., Grutter, Alexandra S., Ferguson, Hugh W., Jones, Rhondda, and Hutson, Kate S. (2018) Cleaner shrimp are true cleaners of injured fish. Marine Biology, 165. 118.

Vaughan, David B., Grutter, Alexandra S., and Hutson, Kate S. (2018) Cleaner shrimp remove parasite eggs on fish cages. Aquaculture Environment Interactions, 10. pp. 429-436.

Vesely, T., Cinkova, K., Reschova, S., Gobbo, F., Ariel, E., Vicenova, M., Pokorova, D., Kulich, P., and Bovo, G. (2011) Investigation of ornamental fish entering the EU for the presence of ranaviruses. Journal of Fish Diseases, 34 (2). pp. 159-166.

W

Wright, Emily E., Nguyen, Hong Uyen, and Owens, Leigh (2017) Preliminary characterization of a Nisin Z bacteriocin with activity against the fish pathogen Streptococcus iniae. Oceanography & Fisheries, 3 (2). pp. 1-13.

Wright, E.E., Elliman, J.R., and Owens, L. (2013) Induction and characterization of lysogenic bacteriophages from Streptococcus iniae. Journal of Applied Microbiology, 114 (6). pp. 1616-1624.

Wu, Xugan, Smith, Greg, and Hall, Michael (2012) Patterns of larval growth, lipid composition and fatty acid deposition during early to mid stages of development in Panulirus ornatus phyllosoma. Aquaculture, 330-333. pp. 63-73.

Weakley, J.C., Claiborne, J.B., Hyndman, K.A., and Edwards, S.L. (2012) The effect of environmental salinity on H+ efflux in the euryhaline barramundi (Lates calcarifer). Aquaculture, 338-341. pp. 190-196.

Y

Yang, Xiaozhen, Wang, Jinfeng, Zhao, Liulan, Fan, Peng, Wu, Xugan, Cheng, Yongxu, and Zeng, Chaoshu (2012) Effects of elevated ambient histamine level on survival, growth, sexual maturity and tissue histamine accumulation of the mysis Neomysis awatschensis and Neomysis japonica Nakazawa. Aquaculture International, 20. pp. 347-356.

Z

Zeng, Chaoshu, Shao, Luchang, Ricketts, Amanda, and Moorhead, Jonathan (2018) The importance of copepods as live feed for larval rearing of the green mandarin fish Synchiropus splendidus. Aquaculture, 491. pp. 65-71.

This list was generated on Wed May 22 22:51:58 2019 AEST.