Zhang, Jia, Schneller, Nadja M., Field, Matt A., Chan, Cheong Xin, Miller, David J., Strugnell, Jan M., Riginos, Cynthia, Bay, Line, and Cooke, Ira (2024) Chromosomal inversions harbour excess mutational load in the coral, Acropora kenti, on the Great Barrier Reef. Molecular Ecology, 33 (16). e17468.

Taite, M., Dillon, L., Strugnell, J.M., Drewery, J., and Allcock, A.L. (2023) DNA barcoding reveals unexpected diversity of deep-sea octopuses in the north-east Atlantic. Biology and Environment, 123 (1). pp. 1-12.

Rosa, Rui, Doubleday, Zoe, Kuba, Michael J., Strugnell, Jan M., Vidal, Erica A.G., and Villanueva, Roger (2023) Editorial: Cephalopods in the Anthropocene: multiple challenges in a changing ocean. Frontiers in Physiology, 14. 1250233.

Taite, M., Fernández-Álvarez, F.A., Braid, H.E., Bush, S.L., Bolstad, K., Drewery, J., Mills, S., Strugnell, J.M., Vecchione, M., Villanueva, R., Voight, J.R., and Allcock, A.L. (2023) Genome skimming elucidates the evolutionary history of Octopoda. Molecular Phylogenetics and Evolution, 182. 107729.

Lau, Sally C. Y., Wilson, Nerida G., Golledge, Nicholas R., Naish, Tim R., Watts, Phillip C., Silva, Catarina N. S., Cooke, Ira R., Allcock, A. Louise, Mark, Felix C., Linse, Katrin, and Strugnell, Jan M. (2023) Genomic evidence for West Antarctic Ice Sheet collapse during the Last Interglacial. Science, 382. pp. 1384-1389.

Lau, Sally C.Y., Strugnell, Jan M., Sands, Chester J., Silva, Catarina N.S., and Wilson, Nerida G. (2023) Genomic insights of evolutionary divergence and life histories innovations in Antarctic brittle stars. Molecular Ecology, 32 (13). pp. 3382-3402.

Hill, Erin, Murphy, Nicholas, Linacre, Adrian, Toop, Simon, and Strugnell, Jan M. (2023) Kinship analysis reveals low dispersal in a hog deer (Axis porcinus) population in Wilsons Promontory National Park, Australia. Wildlife Research, 50 (8-9). pp. 746-756.

Budd, Alyssa M., Schils, Tom, Cooper, Madalyn K., Lyons, Mitchell B., Mills, Matthew S., Deinhart, Mari E., Le Port, Agnes, Huerlimann, Roger, and Strugnell, Jan M. (2023) Monitoring threatened species with environmental DNA and open ecological data: Local distribution and habitat preferences of scalloped hammerhead sharks (Sphyrna lewini). Biological Conservation, 278 (February 2023). 109881.

Whitelaw, Brooke, Finn, Julian K., Zenger, Kyall R., Cooke, Ira R., Morse, Peter, and Strugnell, Jan M. (2023) SNP data reveals the complex and diverse evolutionary history of the blue-ringed octopus genus (Octopodidae: Hapalochlaena) in the Asia-Pacific. Molecular Phylogenetics and Evolution, 186. 107827.

Ramos, Jorge E., Roura, Álvaro, Strugnell, Jan, Moltschaniwskyj, Natalie A., Bargiela, Rafael, and Pecl, Gretta T. (2023) Stomach content characterisation of the marine range-shifting Octopus tetricus using DNA metabarcoding. Marine Ecology Progress Series, 717. pp. 67-83.

Roura, Álvaro, Doyle, Stephen R., Castro-Bugallo, Alexandra, Hall, Nathan E., Gonzalez, Ángel F., and Strugnell, Jan M. (2023) Trophic ecology of Octopus vulgaris paralarvae along the Iberian Canary current eastern boundary upwelling system. Scientific Reports, 13. 8744.

Reid, Amanda, Sato, Noriyosi, Jolly, Jeffrey, and Strugnell, Jan (2023) Two new pygmy squids, Idiosepius kijimuna n.sp. and Kodama jujutsu n.gen., n.sp. (Cephalopoda: Idiosepiidae) from the Ryukyu Islands, Japan. Marine Biology, 170 (12). 167.

Hua, Qiaz Q.H., Thomson, Vicki A., Strugnell, Jan M., Martino, Jasmin C., Gillanders, Bronwyn M., and Doubleday, Zoe A. (2023) Using genomics and morphometrics to monitor data-poor and commercially exploited octopod populations. Marine Biology, 170 (10). 119.

Clarke, Laurence J., Shaw, Justine D., Suter, Leonie, Atalah, Javier, Bergstrom, Dana M., Biersma, Elisabeth, Convey, Peter, Greve, Michelle, Holland, Oakes, Houghton, Melissa J., Hughes, Kevin A., Johnston, Emma L., King, Catherine K., McCarthy, Arlie H., McGaughran, Angela, Pertierra, Luis R., Robinson, Sharon A., Sherman, Craig D.H., Stark, Jonathan S., Stevens, Mark I., Strugnell, Jan M., von Ammon, Ulla, Wilson, Nerida G., Zaiko, Anastasija, and MacDonald, Anna J. (2023) An expert-driven framework for applying eDNA tools to improve biosecurity in the Antarctic. Management of Biological Invasions, 14 (3). pp. 379-402.

Massault, Cecile, Jeffrey, Cara, Jones, David B., Barnard, Roger, Strugnell, Jan M., Zenger, Kyall R., and Jerry, Dean R. (2022) Non-invasive DNA collection for parentage analysis for bivalves: A case study from the silver-lipped pearl oyster (Pinctada maxima). Aquaculture, 552. 738036.

Hill, Erin, Linacre, Adrian, Toop, Simon, Murphy, Nicholas, and Strugnell, Jan M. (2022) Development of an STR panel for a non-native population of an endangered species. Molecular Biology Reports, 49 (1). pp. 839-845.

Wheeler, Carolyn R., Kneebone, Jeff, Heinrich, Dennis, Strugnell, Jan M., Mandelman, John W., and Rummer, Jodie L. (2022) Diel Rhythm and Thermal Independence of Metabolic Rate in a Benthic Shark. Journal of Biological Rhythms, 37 (5). pp. 484-497.

Fernando, Fernando, Candebat, Caroline L., Strugnell, Jan M., Andreakis, Nikolaos, and Nankervis, Leo (2022) Dietary supplementation of astaxanthin modulates skin color and liver antioxidant status of giant grouper (Epinephelus lanceolatus). Aquaculture Reports, 26. 101266.

Villacorta Rath, Cecilia, Green, Bridget S., Gardner, Caleb, Murphy, Nick P., Souza, Carla A., and Strugnell, Jan M. (2022) Disentangling genetic from environmental effects on phenotypic variability of Southern rock lobster (Jasus edwardsii) postlarvae. Ecology and Evolution, 12 (11). e9519.

Strugnell, Jan M., Mcgregor, Helen, Wilson, Nerida G., Meredith, Karina T., Chown, Steven L., Lau, Sally C.Y., Robinson, Sharon A., and Saunders, Krystyna M. (2022) Emerging biological archives can reveal ecological and climatic change in Antarctica. Global Change Biology, 28 (22). pp. 6483-6508.

Zhang, Jia, Richards, Zoe T., Adam, Arne A.S., Chan, Cheong Xin, Shinzato, Chuya, Gilmour, James, Thomas, Luke, Strugnell, Jan M., Miller, David J., and Cooke, Ira (2022) Evolutionary Responses of a Reef-building Coral to Climate Change at the End of the Last Glacial Maximum. Molecular Biology and Evolution, 39 (10). msac201.

Hill, Erin, Murphy, Nicholas, Toop, Simon, Linacre, Adrian, and Strugnell, Jan M. (2022) Genetic analysis of hog deer (Axis porcinus) in Victoria, Australia, and its applications to invasive species and game management. European Journal of Wildlife Research, 68 (4).

Whitelaw, Brooke L., Jones, David B., Guppy, Jarrod, Morse, Peter, Strugnell, Jan M., Cooke, Ira R., and Zenger, Kyall (2022) High-Density Genetic Linkage Map of the Southern Blue-ringed Octopus (Octopodidae: Hapalochlaena maculosa). Diversity, 14 (12). 1068.

Lau, Sally C.Y., and Strugnell, Jan M. (2022) Is the Southern Ocean ecosystem primed for change or at the cliff edge? Global Change Biology, 28 (15). pp. 4493-4494.

Jerry, Dean R., Jones, David B., Lillehammer, Marie, Massault, Cecile, Loughnan, Shannon, Cate, Holly S., Harrison, Paul J., Strugnell, Jan M., Zenger, Kyall R., and Robinson, Nicholas A. (2022) Predicted strong genetic gains from the application of genomic selection to improve growth related traits in barramundi (Lates calcarifer). Aquaculture, 549. 737761.

Lau, Sally C.Y., Strugnell, Jan M., Sands, Chester J., Silva, Catarina N.S., and Wilson, Nerida G. (2021) Evolutionary innovations in Antarctic brittle stars linked to glacial refugia. Ecology and Evolution, 11 (23). pp. 17428-17446.

Queirós, José P., Ramos, Jaime A., Cherel, Yves, Franzitta, Marco, Duarte, Bernardo, Rosa, Rui, Monteiro, Filipa, Figueiredo, Andreia, Strugnell, Jan M., Fukuda, Yuki, Stevens, Darren W., and Xavier, José C. (2021) Cephalopod fauna of the Pacific Southern Ocean using Antarctic toothfish (Dissostichus mawsoni) as biological samplers and fisheries bycatch specimens. Deep-sea Research Part I: Oceanographic Research Papers, 174. 103571.

Silva, Catarina N. S., Young, Emma F., Murphy, Nicholas P., Bell, James J., Green, Bridget S., Morley, Simon A., Duhamel, Guy, Cockcroft, Andrew C., and Strugnell, Jan M. (2021) Climatic change drives dynamic source–sink relationships in marine species with high dispersal potential. Ecology and Evolution, 11 (6). pp. 2535-2550.

Arbon, Phoebe M., Silva, Catarina N.S., Jones, David B., Jaccoud, Damian, Gervis, Mark, Jerry, Dean R., and Strugnell, Jan M. (2021) Development and validation of a SNP-based genotyping tool for pedigree establishment in Australian greenlip abalone Haliotis laevigata Donovan, 1808. Aquaculture Reports, 20. 100746.

Budd, Alyssa M., Cooper, Madalyn K., Le Port, Agnès, Schils, Tom, Mills, Matthew S., Deinhart, Mari E., Huerlimann, Roger, and Strugnell, Jan M. (2021) First detection of critically endangered scalloped hammerhead sharks (Sphyrna lewini) in Guam, Micronesia, in five decades using environmental DNA. Ecological Indicators, 127. 107649.

Silva, Catarina N.S., Murphy, Nicholas P., Bell, James J., Green, Bridget S,, Duhamel, Guy, Cockcroft, Andrew C., Hernández, Cristián E., and Strugnell, Jan M. (2021) Global drivers of recent diversification in a marine species complex. Molecular Ecology, 30 (5). pp. 1223-1236.

Villacorta-Rath, Cecilia, Hoskin, Conrad J., Strugnell, Jan M., and Burrows, Damien (2021) Long distance (>20 km) downstream detection of endangered stream frogs suggests an important role for eDNA in surveying for remnant amphibian populations. PeerJ, 9. e12013.

Woodings, Laura N., Murphy, Nicholas P., Liggins, Geoffrey W., Miller, Marcus E., Ballinger, Giles M., Lau, Sally C.Y., and Strugnell, Jan M. (2021) Population genomics of the Eastern Rock Lobster, Sagmariasus verreauxi, during spawning stock recovery from over-exploitation. ICES Journal of Marine Science, 78 (7). pp. 2448-2459.

Massault, C., Jones, D.B., Zenger, K., Strugnell, J.M., Barnard, R., and Jerry, D.R. (2021) A SNP parentage assignment panel for the silver lipped pearl oyster (Pinctada maxima). Aquaculture Reports, 20. 100687.

Marhoefer, Shelby R., Zenger, Kyall R., Strugnell, Jan M., Logan, Murray, van Oppen, Madeleine J.H., Kenkel, Carly D., and Bay, Line K. (2021) Signatures of Adaptation and Acclimatization to Reef Flat and Slope Habitats in the Coral Pocillopora damicornis. Frontiers in Marine Science, 8. 704709.

Whitelaw, Brooke L., Cooke, Ira R., Finn, Julian, da Fonseca, Rute R., Ritschard, Elena A., Gilbert, M. T. P., Simakov, Oleg, and Strugnell, Jan M. (2020) Adaptive venom evolution and toxicity in octopods is driven by extensive novel gene formation, expansion, and loss. GigaScience, 9 (11). giaa120.

Shiel, Brett P., Cooke, Ira R., Hall, Nathan E., Robinson, Nicholas A., and Strugnell, Jan M. (2020) Gene expression differences between abalone that are susceptible and resilient to a simulated heat wave event. Aquaculture, 526. 735317.

Da Fonseca, Rute R., Couto, Alvarina, Machado, Andre M., Brejova, Brona, Albertin, Carolin B., Silva, Filipe, Gardner, Paul, Baril, Tobias, Hayward, Alex, Campos, Alexandre, Ribeiro, Ângela M., Barrio-Hernandez, Inigo, Hoving, Henk-Jan, Tafur-Jimenez, Ricardo, Chu, Chong, Frazão, Barbara, Petersen, Bent, Peñaloza, Fernando, Musacchia, Francesco, Alexander, Graham C., Osório, Hugo, Winkelmann, Inger, Simakov, Oleg, Rasmussen, Simon, Rahman, M. Ziaur, Pisani, Davide, Vinther, Jakob, Jarvis, Erich, Zhang, Guojie, Strugnell, Jan M., Castro, L. Filipe C., Fedrigo, Olivier, Patricio, Mateus, Li, Qiye, Rocha, Sara, Antunes, Agostinho, Wu, Yufeng, Ma, Bin, Sanges, Remo, Vinar, Tomas, Blagoev, Blagoy, Sicheritz-Ponten, Thomas, Nielsen, Rasmus, and Gilbert, M Thomas P. (2020) A draft genome sequence of the elusive giant squid, Architeuthis dux. GigaScience, 9 (1). giz152.

Villacorta Rath, Cecilia, Adekunle, Adeshina I., Edmunds, Richard C., Strugnell, Jan M., Schwarzkopf, Lin, and Burrows, Damien (2020) Can environmental DNA be used to detect first arrivals of the cane toad, Rhinella marina, into novel locations? Environmental DNA, 2 (4). pp. 635-646.

Lau, Sally C. Y., Wilson, Nerida G., Silva, Catarina N. S., and Strugnell, Jan M. (2020) Detecting glacial refugia in the Southern Ocean. Ecography, 43 (11). pp. 1639-1656.

Huerlimann, R., Cooper, M.K., Edmunds, R.C., Villacorta-Rath, C., Le Port, A., Robson, H.L.A., Strugnell, J.M., Burrows, D., and Jerry, D.R. (2020) Enhancing tropical conservation and ecology research with aquatic environmental DNA methods: an introduction for non-environmental DNA specialists. Animal Conservation, 23 (6). pp. 632-645.

Cooke, Ira, Ying, Hua, Forêt, Sylvain, Bongaerts, Pim, Strugnell, Jan M., Simakov, Oleg, Zhang, Jia, Field, Matt A., Rodriguez-Lanetty, Mauricio, Bell, Sara C., Bourne, David G., van Oppen, Madeleine J.H., Ragan, Mark A., and Miller, David J. (2020) Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts. Science Advances, 6 (48). eabc6318.

Caruana, Nikeisha J., Strugnell, Jan M., Finn, Julian, Faou, Pierre, Plummer, Kim M., and Cooke, Ira R. (2020) Quantitative proteomic analysis of the slime and ventral mantle glands of the Striped Pyjama squid (Sepioloidea lineolata). Journal of Proteome Research, 19. pp. 1491-1501.

Fingerhut, Legana C. H. W., Miller, David J., Strugnell, Jan M., Daly, Norelle L., and Cooke, Ira R. (2020) ampir: an R package for fast genome-wide prediction of antimicrobial peptides. Bioinformatics, 36 (21). btaa653.

Lima, Francoise D., Strugnell, Jan M., Leite, Tatiana S., and Lima, Sergio M.Q. (2020) A biogeographic framework of octopod species diversification: the role of the Isthmus of Panama. PeerJ, 8. e8691.

Voight, Janet R., Kurth, Jessica A., Strauss, Richard E., Strugnell, Jan M., and Allcock, Louise A. (2020) A depth cline in deep-sea octopods (Cephalopoda: Graneledone) in the northeast Pacific Ocean. Bulletin of Marine Science, 96 (2). pp. 323-340.

Oudot, Morgane, Neige, Pascal, Ben Shir, Ira, Schmidt, Asher, Strugnell, Jan M., Plasseraud, Laurent, Broussard, Cédric, Hoffmann, René, Lukeneder, Alexander, and Marin, Frédéric (2020) The shell matrix and microstructure of the Ram's Horn squid: molecular and structural characterization. Journal of Structural Biology, 211 (1). 107507.

Silva, Catarina N.S., Villacorta-Rath, Cecilia, Woodings, Laura N., Murphy, Nicholas P., Green, Bridget S., Hartmann, Klaas, Gardner, Caleb, Bell, James J., and Strugnell, Jan M. (2019) Advancing our understanding of the connectivity, evolution and management of marine lobsters through genetics. Reviews in Fish Biology and Fisheries, 29 (3). pp. 669-687.

Gan, Han Ming, Tan, Mun Hua, Austin, Christopher M., Sherman, Craig D.H., Wong, Yen Ting, Strugnell, Jan, Gervis, Mark, McPherson, Luke, and Miller, Adam D. (2019) Best foot forward: nanopore long reads, hybrid meta-assembly, and haplotig purging optimizes the first genome assembly for the southern hemisphere blacklip abalone (Haliotis rubra). Frontiers in Genetics, 10. 889.

Caruana, Nikeisha J., Strugnell, Jan M., Faou, Pierre, Finn, Julian, and Cooke, Ira R. (2019) Comparative proteomic analysis of slime from the striped pyjama squid, Sepioloidea lineolata, and the southern bottletail squid, Sepiadarium austrinum (Cephalopoda: Sepiadariidae). Journal of Proteome Research, 18 (3). pp. 890-899.

Ritschard, Elena A., Whitelaw, Brooke, Albertin, Caroline B., Cooke, Ira R., Strugnell, Jan M., and Simakov, Oleg (2019) Coupled genomic evolutionary histories as signatures of organismal innovations in Cephalopods co-evolutionary signatures across levels of genome organization may shed light on functional linkage and origin of Cephalopod novelties. BioEssays, 41. 1900073.

Woodings, Laura N., Murphy, Nicholas P., Jeffs, Andrew, Suthers, Iain M., Liggins, Geoffrey, and Strugnell, Jan M. (2019) Distribution of Palinuridae and Scyllaridae phyllosoma larvae within the East Australian Current: a climate change hot spot. Marine and Freshwater Research, 70. pp. 1020-1033.

Nowland, Samantha J., Silva, Catarina N.S., Southgate, Paul C., and Strugnell, Jan M. (2019) Mitochondrial and nuclear genetic analyses of the tropical black-lip rock oyster (Saccostrea echinata) reveals population subdivision and informs sustainable aquaculture development. BMC Genomics, 20. 711.

Cooke, Ira, Mead, Oliver, Whalen, Casey, Boote, Chloe, Moya, Aurelie, Ying, Hua, Robbins, Steven, Strugnell, Jan M., Darling, Aaron, Miller, David, Voolstra, Christian, and Adamska, Maya (2019) Molecular techniques and their limitations shape our view of the holobiont. Zoology, 137. 125695.

Roura, Alvaro, Amor, Michael, Gonzalez, Angel F., Guerra, Angel, Barton, Eric D., and Strugnell, Jan M. (2019) Oceanographic processes shape genetic signatures of planktonic cephalopod paralarvae in two upwelling regions. Progress in Oceanography, 170. pp. 11-27.

Jaspers, Cornelia, Fraune, Sebastian, Arnold, A. Elizabeth, Miller, David J., Bosch, Thomas C.G., Voolstra, Christian R., Adamska, Maja, Ainsworth, Tracy, Ball, Eldon, Boote, Chlöe, Bourne, David, Butterfield, Nicholas J., Chan, Cheong Xin, Cooke, Ira, Cowman, Peter F., Darling, Aaron, Davy, Simon K., Mohamed, Amin, Fabricius, Katharina, Valero Fortunato, Sofia V., Hernandez Agreda, Alejandra, Hoogenboom, Mia, Moya, Aurelie, Pita, Lucia, Ragan, Mark A., Robbins, Steven J., Andrade Rodriguez, Natalia R., Sakamaki, Kazuhiro, Schoepf, Verena, Seemann, Thorsten, Shinzato, Chuya, Stolarski, Jarosław, Strugnell, Jan, Takahashi, Shunichi, Tang, Sen-Lin, Webster, Nicole N, Whitelaw, Brooke, and Ying, Hua (2019) Resolving structure and function of metaorganisms through a holistic framework combining reductionist and integrative approaches. Zoology, 133. pp. 81-87.

Hill, Erin, Linacre, Adrian, Toop, Simon, Murphy, Nicholas, and Strugnell, Jan (2019) Widespread hybridization in the introduced hog deer population of Victoria, Australia, and its implications for conservation. Ecology and Evolution, 9 (18). pp. 10828-10842.

Whitelaw, Brooke L., Cooke, Ira R., Finn, Julian, Zenger, Kyall, and Strugnell, J.M. (2019) The evolution and origin of tetrodotoxin acquisition in the blue-ringed octopus (genus Hapalochlaena). Aquatic Toxicology, 206. pp. 114-122.

Hua, Katheline, Cobcroft, Jennifer M., Cole, Andrew, Condon, Kelly, Jerry, Dean R., Mangott, Arnold, Praeger, Christina, Vucko, Matthew J., Zeng, Chaoshu, Zenger, Kyall, and Strugnell, Jan M. (2019) The future of aquatic protein: implications for protein sources in aquaculture diets. One Earth, 1 (3). pp. 316-329.

Gutt, J., Isla, E., Bertler, A.N., Bodeker, G.E., Bracegirdle, T.J., Cavanagh, R.D., Comiso, J.C., Convey, P., Cummings, V., De Conto, R., De Master, D., di Prisco, G., d'Ovidio, F., Griffiths, H.J., Khan, A.L., Lopez-Martinez, J., Murray, A.E., Nielsen, U.N., Ott, S, Post, A., Ropert-Coudert, Y., Saucede, T., Scherer, R., Schiaparelli, S., Scholss, I.R., Smith, C.R., Stefels, J., Steven, C., Strugnell, J.M., Trimborn, S., Verde, C., Verleyen, E., Wall, D.H., Wilson, N.G., and Xavier, J.C. (2018) Cross-disciplinarity in the advance of Antarctic ecosystem research. Marine Genomics, 37.

Strugnell, Jan M., Pedro, Joel B., and Wilson, Nerida (2018) Dating Antarctic ice sheet collapse: proposing a molecular genetic approach. Quaternary Science Reviews, 179. pp. 153-157.

Souza, Carla Anjos, Murphy, Nicholas, and Strugnell, Jan M. (2018) De novo transcriptome assembly and functional annotation of the southern rock lobster (Jasus edwardsii). Marine Genomics, 42. pp. 58-62.

Sanchez, Gustavo, Setiamarga, Davin H.E., Tuanapaya, Surangkana, Tongtherm, Kittichai, Winkelmann, Inger E., Schmidbaur, Hannah, Umino, Tetsuya, Albertin, Caroline, Allcock, Louise, Perales-Raya, Catalina, Gleadall, Ian, Strugnell, Jan M., Simakov, Oleg, and Nabhitabhata, Jaruwat (2018) Genus-level phylogeny of cephalopods using molecular markers: current status and problematic areas. PeerJ, 6. e4331.

Bonebrake, Timothy C., Brown, Christopher J., Bell, Johann D., Blanchard, Julia L., Chauvenet, Alienor, Champion, Curtis, Chen, I-Ching, Clark, Timothy D., Colwell, Robert K., Danielsen, Finn, Dell, Anthony I., Donelson, Jennifer M., Evengård, Birgitta, Ferrier, Simon, Frusher, Stewart, Garcia, Raquel A., Griffis, Roger B., Hobday, Alistair J., Jarzyna, Marta A., Lee, Emma, Lenoir, Jonathan, Linnetved, Hlif, Martin, Victoria Y., McCormack, Phillipa C., McDonald, Jan, McDonald-Madden, Eve, Mitchell, Nicola, Mustonen, Tero, Pandolfi, John M., Pettorelli, Nathalie, Possingham, Hugh, Pulsifer, Peter, Reynolds, Mark, Scheffers, Brett R., Sorte, Cascde J.B., Strugnell, Jan M., Tuanmu, Mao-Ning, Twiname, Samantha, Vergés, Adriana, Villanueva, Cecilia, Wapstra, Erik, Wernberg, Thomas, and Pecl, Gretta T. (2018) Managing consequences of climate-driven species redistribution requires integration of ecology, conservation and social science. Biological Reviews, 93 (1). pp. 284-305.

Woodings, Laura N., Murphy, Nicholas P., Doyle, Stephen R., Hall, Nathan E., Robinson, Andrew J., Liggins, Geoffrey W., Green, Bridget S., Cooke, Ira R., Bell, James J., and Strugnell, Jan M. (2018) Outlier SNPs detect weak regional structure against a background of genetic homogeneity in the Eastern Rock Lobster, Sagmariasus verreauxi. Marine Biology, 165 (12). 185.

Ramos, Jorge E., Pecl, Gretta T., Moltschaniwskyj, Natalie, Semmens, Jayson M., Souza, Carla A., and Strugnell, Jan M. (2018) Population genetic signatures of a climate change driven marine range extension. Scientific Reports, 8. 9558.

Fingerhut, Legana C.H.W., Strugnell, Jan M., Faou, Pierre, Labiaga, Àlvaro Roura, Zhang, Jia, and Cooke, Ira R. (2018) Shotgun proteomics analysis of saliva and salivary gland tissue from the common octopus Octopus vulgaris. Journal of Proteome Research, 17 (11). pp. 3866-3876.

Roura, Álvaro, Strugnell, Jan M., Guerra, Ángel, Gonzalez, Ángel F., and Richardson, Anthony J. (2018) Small copepods could channel missing carbon through metazoan predation. Ecology and Evolution, 8 (22). pp. 10868-10878.

Shiel, Brett P., Cooke, Ira R., Hall, Nathan E., Robinson, Nicholas A., and Strugnell, Jan M. (2018) Summer mortality in molluscs: the genetic basis for resilience and susceptibility. In: Breeding Focus 2018. pp. 59-79. From: Breeding Focus 2018: reducing heat stress, 19-20 September 2018, Armidale, NSW, Australia.

Villacorta-Rath, Cecilia, Souza, Carla A., Murphy, Nicholas P., Green, Bridget S., Gardner, Caleb, and Strugnell, Jan M. (2018) Temporal genetic patterns of diversity and structure evidence chaotic genetic patchiness in a spiny lobster. Molecular Ecology, 27 (1). pp. 54-65.

Bolstad, Kat S.R., Braid, Heather E., Strugnell, Jan M., Lindgren, Annie R., Lischka, Alexandra, Kubodera, Tsunemi, Laptikhovsky, Vladimir L., and Labiaga, Alvaro Roura (2018) A mitochondrial phylogeny of the family Onychoteuthidae Gray, 1847 (Cephalopoda: Oegopsida). Molecular Phylogenetics and Evolution, 128. pp. 88-97.

Reid, Amanda L., and Strugnell, Jan M. (2018) A new pygmy squid, Idiosepius hallami n. sp (Cephalopoda: Idiosepiidae) from eastern Australia and elevation of the southern endemic 'notoides' clade to a new genus, Xipholeptos n. gen. Zootaxa, 4369 (4). pp. 451-486.

Shiel, Brett P., Hall, Nathan E., Cooke, Ira R., Robinson, Nicholas A., Stone, David A.J., and Strugnell, Jan M. (2017) The effect of commercial, natural and grape seed extract supplemented diets on gene expression signatures and survival of greenlip abalone (Haliotis laevigata) during heat stress. Aquaculture, 479. pp. 798-807.

Strugnell, Jan M., Hall, Nathan E., Vecchione, Michael, Fuchs, Dirk, and Allcock, A. Loiuse (2017) Whole mitochondrial genome of the Ram's Horn Squid shines light on the phylogenetic position of the monotypic order Spirulida (Haeckel, 1896). Molecular Phylogenetics and Evolution, 109. pp. 296-301.

Pecl, Gretta, Araújo, Miguel B., Bell, Johann D., Blanchard, Julia, Bonebrake, Timothy C., Chen, I-Ching, Clark, Timothy D., Colwell, Robert K., Danielsen, Finn, Evengård, Birgitta, Falconi, Lorena, Ferrier, Simon, Frusher, Stewart, Garcia, Raquel A., Griffis, Roger B., Hobday, Alistair J., Janion-Scheepers, Charlene, Jarzyna, Marta A., Jennings, Sarah, Lenoir, Jonathan, Linnetved, Hlif I., Martin, Victoria Y., McCormack, Phillipa C., McDonald, Jan, Mitchell, Nicola J., Mustonen, Tero, Pandolfi, John M., Pettorelli, Nathalie, Popova, Ekaterina, Robinson, Sharon A., Scheffers, Brett R., Shaw, Justine D., Sorte, Cascade J.B., Strugnell, Jan, Sunday, Jennifer M., Tuanmu, Mao-Ning, Vergés, Adriana, Villanueva, Cecilia, Wernberg, Thomas, Wapstra, Erik, and Williams, Stephen E. (2017) Biodiversity redistribution under climate change: impacts on ecosystems and human well-being. Science, 355. 6332.

Strugnell, Jan M., Allcock, A. Louise, and Watts, Phillip C. (2017) Closely related octopus species show different spatial genetic structures in response to the Antarctic seascape. Ecology and Evolution, 7 (19). pp. 8087-8099.

Souza, Carla A., Murphy, Nicholas, Villacorta-Rath, Cecilia, Woodings, Laura N., Ilyushkina, Irina, Hernandez, Cristian E., Green, Bridget S., Bell, James J., and Strugnell, Jan (2017) Efficiency of ddRAD target enriched sequencing across spiny rock lobster species (Palinuridae: Jasus). Scientific Reports, 7 (1). 6781.

Shiel, Brett P., Hall, Nathan E., Cooke, Ira R., Robinson, Nicholas A., and Strugnell, Jan M. (2017) Epipodial tentacle gene expression and predetermined resilience to summer mortality in the commercially important greenlip abalone, Haliotis laevigata. Marine Biotechnology, 19 (2). pp. 191-205.

Amor, Michael D., Laptikhovsky, Vladimir, Norman, Mark, and Strugnell, Jan M. (2017) Genetic evidence extends the known distribution of Octopus insularis to the mid-Atlantic islands Ascension and St Helena. Journal of the Marine Biological Association of the United Kingdom, 97 (4). pp. 753-758.

Roura, Álvaro, Doyle, Stephen R., Nande, Manuel, and Strugnell, Jan M. (2017) You are what you eat: a genomic analysis of the gut microbiome of captive and wild Octopus vulgaris paralarvae and their zooplankton prey. Frontiers in Physiology, 8. 362.

Hill, Erin, Linacre, Adrian M.T., Toop, Simon, Murphy, Nicholas P., and Strugnell, Jan M. (2017) The complete mitochondrial genome of Axis porcinus (Mammalia: Cervidae) from Victoria, Australia, using MiSeq sequencing. Mitochondrial DNA Part B: Resources, 2 (2). pp. 453-454.

Villacorta-Rath, Cecilia, Ilyushkina, Irina, Strugnell, Jan M., Green, Bridget S., Murphy, Nicholas P., Doyle, Stephen R., Hall, Nathan E., Robinson, Andrew J., and Bell, James J. (2016) Outlier SNPs enable food traceability of the southern rock lobster, Jasus edwardsii. Marine Biology, 163 (11). 223.

Strugnell, Jan (2016) Kudos for female Antarctic researchers. Nature, 536. p. 148.

Whitelaw, Brooke Lauren, Strugnell, Jan M., Faou, Pierre, da Fonseca, Rute R., Hall, Nathan, Norman, Mark, Finn, Julian, and Cooke, Ira Robin (2016) Combined transcriptomic and proteomic analysis of the posterior salivary gland from the southern blue-ringed octopus and the southern sand octopus. Journal of Proteome Research, 15 (9). pp. 3284-3297.

Amor, Michael D., Norman, Mark D., Roura, Alvaro, Leite, Tatiana S., Gleadall, Ian G., Reid, Amanda, Perales-Raya, Catalina, Lu, Chung-Cheng, Silvey, Colin J., Vidal, Erica A.G., Hochberg, Frederick G., Zheng, Xiaodong, and Strugnell, Jan M. (2016) Morphological assessment of the Octopus vulgaris species-complex evaluated in light of molecular-based phylogenetic inferences. Zoologica Scripta, 46 (3). pp. 275-288.

Caruana, Nikeisha J., Cooke, Ira R., Faou, Pierre, Finn, Julian, Hall, Nathan E., Norman, Mark, Pineda, Sandy S., and Strugnell, Jan M. (2016) A combined proteomic and transcriptomic analysis of slime secreted by the southern bottletail squid, Sepiadarium austrinum (Cephalopoda). Journal of Proteomics, 148. pp. 170-182.

Robinson, Nick A., Hall, Nathan E., Ross, Elizabeth M., Cooke, Ira R., Shiel, Brett P., Robinson, Andrew J., and Strugnell, Jan M. (2016) The complete mitochondrial genome of Haliotis laevigata (Gastropoda: Haliotidae) using MiSeq and HiSeq sequencing. Mitochondrial DNA Part A: DNA mapping, sequencing and analysis, 27. pp. 437-438.

Hall, Nathan E., Hanzak, Jan, Allcock, A. Louise, Cooke, Ira R., Ogura, Atsushi, and Strugnell, Jan M. (2016) The complete mitochondrial genome of the pygmy squid, Idiosepius (Cephalopoda: Decapodiformes): the first representative from the family Idiosepiidae. Mitochondrial DNA Part A: DNA mapping, sequencing and analysis, 27 (1). pp. 5-6.

Bolstad, K.S.R., Perez, J.A.A., Strugnell, J.M., and Vidal, E.A.G. (2015) Cranchiids of the South Atlantic Mid-Oceanic Ridge: results from the first southern MAR-ECO expedition. Journal of Natural History, 49 (21-24). pp. 1351-1371.

Shiel, Brett P., Hall, Nathan E., Cooke, Ira R., Robinson, Nicholas A, and Strugnell, Jan M. (2015) De novo characterisation of the greenlip abalone transcriptome (Haliotis laevigata) with a focus on the heat shock protein 70 (HSP70) family. Marine Biotechnology, 17. pp. 23-32.

Xavier, Jose C., Allcock, A. Louise, Cherel, Yves, Lipinski, Marek R., Pierce, Graham J., Rodhouse, Paul G.K., Rosa, Rui, Shea, Elizabeth K., Strugnell, Jan M., Vidal, Erica A.G., Villanueva, Roger, and Ziegler, Alexander (2015) Future challenges in cephalopod research. Journal of the Marine Biological Association of the United Kingdom, 95 (5). pp. 999-1015.

Hill, Erin, Ingram, Brett A., Rourke, Meaghan, Mitchell, John, and Strugnell, Jan M. (2015) Genetic diversity and population structure of the threatened freshwater catfish, Tandanus tandanus, in Victoria, Australia. Conservation Genetics, 16 (2). pp. 317-329.

Doyle, Stephen R., Griffith, Ian S., Murphy, Nick P., and Strugnell, Jan M. (2015) Low-coverage MiSeq next generation sequencing reveals the mitochondrial genome of the eastern rock lobster, Sagmariasus verreauxi. Mitochondrial DNA Part A: DNA mapping, sequencing and analysis, 26 (6). pp. 844-845.

Oellermann, Michael, Strugnell, Jan M., Lieb, Bernhard, and Mark, Felix C. (2015) Positive selection in octopus haemocyanin indicates functional links to temperature adaptation. BMC Evolutionary Biology, 15 (133). pp. 1-18.

Ramos, Jorge E., Pecl, Gretta T., Semmens, Jayson M., Strugnell, Jan M., León, Rafael I., and Moltschaniwskyj, Natalie A. (2015) Reproductive capacity of a marine species (Octopus tetricus) within a recent range extension area. Marine and Freshwater Research, 66 (11). pp. 999-1008.

Cooke, Ira R., Whitelaw, Brooke, Norman, Mark, Caruana, Nikeisha, and Strugnell, Jan (2015) Toxicity in cephalopods. In: Gopalakrishnakone, P., and Malhotra, Anita, (eds.) Evolution of Venomous Animals and Their Toxins. Toxinology . Springer, Leiden, The Netherlands, pp. 1-15.

Allcock, A. Louise, Lindgren, A., and Strugnell, J.M. (2015) The contribution of molecular data to our understanding of cephalopod evolution and systematics: a review. Journal of Natural History, 49 (21-24). pp. 1373-1421.

Strugnell, Jan M., Norman, Mark D., Vecchione, Michael, Guzik, Michelle, and Allcock, A. Louise (2014) The ink sac clouds octopod evolutionary history. Hydrobiologia, 725 (1). pp. 215-235.

Amor, Michael D., Norman, Mark D., Cameron, Hayley E., and Strugnell, Jan M. (2014) Allopatric speciation within a cryptic species complex of Australasian octopuses. PLoS ONE, 9 (6). e98982. pp. 1-13.

Ramos, Jorge E., Pecl, Gretta T., Moltschaniwskyj, Natalie A., Strugnell, Jan M., Leon, Rafael I., and Semmens, Jayson M. (2014) Body size, growth and life span: implications for the polewards range shift of Octopus tetricus in South-Eastern Australia. PLoS ONE, 9 (8). e10348. pp. 1-9.

Winkelmann, Inger, Campos, Paula F., Strugnell, Jan, Cherel, Yves, Smith, Peter J., Kubodera, Tsunemi, Allcock, Louise, Kampmann, Marie-Louise, Schroeder, Hannes, Guerra, Angel, Norman, Mark, Finn, Julian, Ingrao, Debra, Clarke, Malcolm, and Gilbert, M. Thomas P. (2013) Mitochondrial genome diversity and population structure of the giant squid Architeuthis: genetics sheds new light on one of the most enigmatic marine species. Proceedings of the Royal Society of London Series B: biological sciences, 280 (1759). 20130273. pp. 1-9.

Moreau, Camille, Linse, Katrin, Griffiths, Huw, Barnes, David, Kaiser, Stefanie, Glover, Adrian, Sands, Chester, Strugnell, Jan, and Enderlein, Peter (2013) Amundsen sea Mollusca from the BIOPEARL II expedition. ZooKeys, 294. pp. 1-8.

Morgan, Erin M.J., Green, Bridget S., Murphy, Nicholas P., and Strugnell, Jan M. (2013) Investigation of genetic structure between deep and shallow populations of the southern rock lobster, Jasus edwardsii in Tasmania, Australia. PLoS One, 8 (10). e77978. pp. 1-10.

Kaiser, Stefanie, Brandão, Simone N., Brix, Saskia, Barnes, David K.A., Bowden, David A., Ingels, Jeroen, Leese, Florian, Schiaparelli, Stefano, Arango, Claudia P., Badhe, Renuka, Bax, Narissa, Blazewicz-Paszkowycz, Magdalena, Brandt, Angelika, Brenke, Nils, Catarino, Ana I., David, Bruno, De Ridder, Chantal, Dubois, Philippe, Ellingsen, Kari E., Glover, Adrian G., Griffiths, Huw J., Gutt, Julian, Halanych, Kenneth M., Havermans, Charlotte, Held, Christoph, Janussen, Dorte, Lörz, Anne-Nina, Pearce, David A., Pierrat, Benjamin, Riehl, Torben, Rose, Armin, Sands, Chester J., Soler-Membrives, Anna, Schueller, Myriam, Strugnell, Jan M., Vanreusel, Ann, Veit-Köhler, Gritta, Wilson, Nerida G., and Yasuhara, Moriaki (2013) Patterns, processes and vulnerability of Southern Ocean benthos: a decadal leap in knowledge and understanding. Marine Biology, 160 (9). pp. 2295-2317.

Breton, Gérard, Strugnell, Jan, and Donovan, Desmond T. (2013) A coleoid gladius (Mollusca, Cephalopoda) from the Albian of Normandy (France): a new squid genus and species. Annales de Paleontologie, 99 (3). pp. 275-283.

Linse, Katrin, Griffiths, Huw J., Barnes, Dave K.A., Brand, Angelika, Davey, Niki, David, Bruno, De Grave, Sammy, d'Acoz, Cédric d'Udekem, Eléaume, Marc, Glover, Adrian G., Hemery, Lenaïg G., Mah, Christopher, Martin-Ledo, Rafael, Munilla, Tomas, O'Loughlin, Mark, Pierrat, Benjamin, Saucede, Thomas, Sands, Chester J., Strugnell, Jan M., and Enderlein, Peter (2013) The macro- and megabenthic fauna on the continental shelf of the eastern Amundsen Sea, Antarctica. Continental Shelf Research, 68. pp. 80-90.

Robinson, Nick, Smith, Ben, Cooke, Ira, and Strugnell, Jan (2013) A snail's pace: a preliminary analysis of the effects of stress and genetics on movement of Haliotis. Aquaculture, 376-379. pp. 25-35.

Albertin, Caroline B., Bonnaud, Laure, Brown, C. Titus, Crookes-Goodson, Wendy J., da Fonseca, Rute R., Di Cristo, Carlo, Dilkes, Brian P., Edsinger-Gonzales, Eric, Freeman, Robert M., Hanlon, Roger T., Koenig, Kristen M., Lindgren, Annie R., Martindale, Mark Q., Minx, Patrick, Moroz, Leonid L., Noedl, Marie-Therese, Nyholm, Spencer V., Ogura, Atsushi, Pungor, Judit R., Rosenthal, Joshua J.C., Schwarz, Erich M., Shigeno, Shuichi, Strugnell, Jan M., Wollesen, Tim, Zhang, Guojie, and Ragsdale, Clifton W. (2012) Cephalopod genomics: a plan of strategies and organization. Standards in Genomic Sciences, 7 (1). pp. 175-188.

Strugnell, J.M., Watts, P.C., Smith, P.J., and Allcock, A.L. (2012) Persistent genetic signatures of historic climatic events in an Antarctic octopus. Molecular Ecology, 21 (11). pp. 2775-2787.

Allcock, A. Louise, and Strugnell, Jan M. (2012) Southern Ocean diversity: new paradigms from molecular ecology. Trends in Ecology & Evolution, 27 (9). pp. 520-528.

Allcock, A. Louise, Barratt, Iain, Eléaume, Marc, Linse, Katrin, Norman, Mark D., Smith, Peter J., Steinke, Dirk, Stevens, Darren W., and Strugnell, Jan M. (2011) Cryptic speciation and the circumpolarity debate: a case study on endemic Southern Ocean octopuses using the COI barcode of life. Deep-Sea Research Part II: topical studies in oceanography, 58 (1-2). pp. 242-249.

Dettai, Agnes, Adamowizc, Sarah J. , Allcock, Louise, Arango, Claudia P., Barnes, David K.A., Barratt, Iain, Chenuil, Anne, Couloux, Arnaud, Cruaud, Corinne, David, Bruno, Denis, Françoise, Denys, Gael, Díaz, Angie, Eléaume, Marc, Féral, Jean-Pierre, Froger, Aurélie, Gallut, Cyril, Grant, Rachel, Griffiths, Huw J., Held, Christoph, Hemery, Lenaïg G., Hosie, Graham, Kuklinski, Piotr, Lecointre, Guillaume, Linse, Katrin, Lozouet, Pierre, Mah, Christopher, Monniot, Françoise, Norman, Mark D., O'Hara, Timothy, Ozouf-Costaz, Catherine, Piedallu, Claire, Pierrat, Benjamin, Poulin, Elie, Puillandre, Nicolas, Riddle, Martin, Samadi, Sarah, Saucède, Thomas, Schubart, Christoph, Smith, Peter J., Stevens, Darren W. , Steinke, Dirk, Strugnell, Jan M., Tarnowska, K., Wadley, Victoria, and Améziane, Nadia (2011) DNA barcoding and molecular systematics of the benthic and demersal organisms of the CEAMARC survey. Polar Science, 5 (2). pp. 298-312.

Strugnell, J.M., Cherel, Y., Cooke, I.R., Gleadall, I.G., Hochberg, F.G, Ibáñez, I.G., Jorgensen, E., Laptikhovsky, V.V., Linse, K., Norman, M., Vecchione, M., Voight, J.R., and Allcock, A.L. (2011) The Southern Ocean: source and sink? Deep-Sea Research Part II: topical studies in oceanography, 58 (1-2). pp. 196-204.

Allcock, A. Louise, Cooke, Ira R., and Strugnell, Jan M. (2011) What can the mitochondrial genome reveal about higher-level phylogeny of the molluscan class Cephalopoda? Zoological Journal of the Linnean Society, 161 (3). pp. 573-586.

Jorgensen, Elaina M., Strugnell, Jan M., and Allcock, A. Louise (2010) Description and phylogenetic relationships of a new genus of octopus, Sasakiopus (Cephalopoda: Octopodidae), from the Bering Sea, with a redescription of Sasakiopus salebrosus (Sasaki, 1920). Journal of Molluscan Studies, 76 (1). pp. 57-66.

Collins, Martin A., Laptikhovsky, Vladimir, and Strugnell, Jan M. (2010) Expanded description of Opisthoteuthis hardyi based on new specimens from the Patagonian slope. Journal of the Marine Biological Association of the United Kingdom, 90 (3). pp. 605-611.

Donovan, D.T., and Strugnell, J.M. (2010) A redescription of the fossil coleoid cephalopod genus Palaeololigo Naef, 1921 (Decapodiformes: Palaeololiginidae) and its relationship to Recent squids. Journal of Natural History, 44 (23-24). pp. 1475-1492.

Strugnell, Jan M., Allcock, A. Louise, and Watts, Phillip C. (2009) Microsatellite loci from the endemic Southern Ocean octopus Adelieledone polymorpha (Robson, 1930). Molecular Ecology Resources, 9 (3). pp. 1068-1070.

Strugnell, Jan M., Allcock, A. Louise, and Watts, Phillip C. (2009) A panel of microsatellite loci from two species of octopus, Pareledone turqueti (Joubin, 1905) and Pareledone charcoti (Joubin, 1905). Molecular Ecology Resources, 9 (4). pp. 1239-1242.

Strugnell, Jan M., Rogers, Alex D., Prodöhl, Paulo A., Collins, Martin A., and Allcock, A. Louise (2008) The thermohaline expressway: the Southern Ocean as a centre of origin for deep-sea octopuses. Cladistics, 24 (6). pp. 853-860.

Allcock, A. Louise, Strugnell, Jan M., and Johnson, Mark P. (2008) How useful are the recommended counts and indices in the systematics of the Octopodidae (Mollusca : Cephalopoda). Biological Journal of the Linnean Society, 95 (1). pp. 205-218.

Strugnell, J.M., Collins, M.A., and Allcock, A.L. (2008) Molecular evolutionary relationships of the octopodid genus Thaumeledone (Cephalopoda : Octopodidae) from the Southern Ocean. Antarctic Science, 20 (3). pp. 245-251.

Allcock, A.L., Strugnell, J.M., Prodöhl, P., Piatkowski, U., and Vecchione, M. (2007) A new species of Pareledone (Cephalopoda : Octopodidae) from Antarctic Peninsula Waters. Polar Biology, 30 (7). pp. 883-893.

Allcock, A.L., Strugnell, J.M., Ruggiero, H., and Collins, M.A. (2006) Redescription of the deep-sea octopod Benthoctopus normani (Massy 1907) and a description of a new species from the Northeast Atlantic. Marine Biology Research, 2 (6). pp. 372-387.

Strugnell, Jan M., and Southgate, Paul C. (2003) Changes in tissue composition during larval development of the blacklip pearl oyster, Pinctada margaritifera (L.). Molluscan Research, 23 (2). pp. 179-183.