A

Athukorala, Ajani, Donnelly, Camilla M., Pavan, Silvia, Nematollahzadeh, Sepehr, Djossou, Victoria Atalie, Nath, Babu, Helbig, Karla J., Di Iorio, Enzo, McSharry, Brian P., Alvisi, Gualtiero, Forwood, Jade K., and Sarker, Subir (2024) Structural and functional characterization of siadenovirus core protein VII nuclear localization demonstrates the existence of multiple nuclear transport pathways. Journal of General Virology, 105 (1). 001928.

Athukorala, Ajani, Lacasse, Claude, Curtiss, Jeffrey B., Phalen, David N., and Sarker, Subir (2023) Characterisation of a novel aviadenovirus associated with disease in tawny frogmouths (Podargus strigoides). Virology, 588. 109904.

Abalaka, Samson Eneojo, Idoko, Idoko Sunday, Adamu, Andrew Musa, Nafarnda, Wesley Daniel, Machunga-Mabunla, Salamatu, Audu, Zakariya, Sani, Nuhu Abdulazeez, Tenuche, Oremeyi Zaynab, and Ejeh, Sunday Augustine (2023) Histopathological and health risk assessment of heavy metals in the straw-colored fruit bat, Eidolon helvum, in Nigeria. Environmental Monitoring and Assessment, 195. 411.

Athukorala, Ajani, Helbig, Karla J., Mcsharry, Brian P., Forwood, Jade K., and Sarker, Subir (2022) Adenoviruses in Avian Hosts: Recent Discoveries Shed New Light on Adenovirus Diversity and Evolution. Viruses, 14 (8). 1767.

B

Bordicchia, Matteo, Fumian, Tulio Machado, Van Brussel, Kate, Russo, Alice G., Carrai, Maura, Le, Shi-Jia, Pesavento, Patricia A., Holmes, Edward C., Martella, Vito, White, Peter, Beatty, Julia A., Shi, Mang, and Barrs, Vanessa R. (2021) Feline Calicivirus Virulent Systemic Disease: Clinical Epidemiology, Analysis of Viral Isolates and In Vitro Efficacy of Novel Antivirals in Australian Outbreaks. Viruses, 13 (10). 2040.

Baturcam, E., Snape, N., Yeo, T.H., Schagen, J., Thomas, E., Logan, J., Galbraith, S., Collinson, N., Phipps, S., Fantino, E., Sly, P.D., and Spann, K.M. (2017) Human metapneumovirus impairs apoptosis of nasal epithelial cells in asthma via HSP70. Journal of Innate Immunity, 9 (1). pp. 52-64.

C

Chang, Wei-Shan, Harvey, Erin, Mahar, Jackie E., Firth, Cadhla, Shi, Mang, Simon-Loriere, Etienne, Geoghegan, Jemma L., and Wille, Michelle (2024) Improving the reporting of metagenomic virome-scale data. Communications Biology, 7. 1687.

Capozza, Paolo, Carrai, Maura, Choi, Yan Ru, Tu, Thomas, Nekouei, Omid, Lanave, Gianvito, Martella, Vito, Beatty, Julia A., and Barrs, Vanessa R. (2023) Domestic Cat Hepadnavirus: Molecular Epidemiology and Phylogeny in Cats in Hong Kong. Viruses, 15 (1). 150.

Costa, Vincenzo A., Bellwood, David R., Mifsud, Jonathon C.O., Van Brussel, Kate, Geoghegan, Jemma L., Holmes, Edward C., and Harvey, Erin (2023) Limited cross-species virus transmission in a spatially restricted coral reef fish community. Virus Evolution, 9 (1). vead011.

Choi, Yan Ru, Chen, Min-Chun, Carrai, Maura, Rizzo, Francesca, Chai, Yingfei, Tse, May, Jackson, Ken, Martella, Vito, Steiner, Joerg, Pesavento, Patricia A., Beatty, Julia A., and Barrs, Vanessa R. (2022) Hepadnavirus DNA Is Detected in Canine Blood Samples in Hong Kong but Not in Liver Biopsies of Chronic Hepatitis or Hepatocellular Carcinoma. Viruses, 14 (7). 1453.

Collinson, Natasha, Snape, Natale, Beagley, Kenneth, Fantino, Emmanuelle, and Spann, Kirsten (2021) COPD is associated with elevated IFN-β production by bronchial epithelial cells infected with RSV or hMPV. Viruses, 13 (5). 911.

Cárdenas, Diana M., Cucalón, Roberto V., Medina-Magües, Lex G., Jones, Karina, Aleman, Rubén A., Alfaro-Núñez, Alonzo, and Cárdenas, Washington B. (2019) Fibropapillomatosis in a green sea turtle (Chelonia mydas) from the southeastern Pacific. Journal of Wildlife Diseases, 55 (1). pp. 169-173.

D

Das, Shubhagata, Fearnside, Kathleen, Sarker, Subir, Forwood, Jade K., and Raidal, Shane R. (2017) A novel pathogenic aviadenovirus from red-bellied parrots (Poicephalus rufiventris) unveils deep recombination events among avian host lineages. Virology, 502. pp. 188-197.

Das, Shubhagata, Subir, Sarker, Adriaanse, Katherine, Forwood, Jade K., Ghorashi, Seyed A., and Raidal, Shane R. (2016) Characterization of Beak and Feather Disease Virus Genomes from Wild Musk Lorikeets (Glossopsitta concinna). Genome Announcements, 4 (5). e01107-16.

Das, Shubhagata, Sarker, Subir, Ghorashi, Seyed Ali, Forwood, Jade K., and Raidal, Shane R. (2016) A comparison of PCR assays for beak and feather disease virus and high resolution melt (HRM) curve analysis of replicase associated protein and capsid genes. Journal of Virological Methods, 237. pp. 47-57.

Dixon, P.F., Ngoh, G.-H., Stone, D.M., Chang, S.F., Way, K., and Kueh, S. (2008) Proposal for a fourth aquabirnavirus serogroup. Archives of Virology, 153. pp. 1937-1941.

G

Go, Yun Young, Carrai, Maura, Choi, Yan Ru, Brackman, Christopher J., Tam, Karina W.S., Law, Pierra Y.T., Woodhouse, Fiona, Gray, Jane, Kim, Ji Hun, Park, Joohyung, Jeon, Chae Won, Jang, Hyomi, Magouras, Ioannis, Decaro, DecaroNicola, Cheng, Samuel M.S., Peiris, Malik, Beatty, Julia A., and Barrs, Vanessa R. (2023) Low Prevalence of SARS-CoV-2 Antibodies in Canine and Feline Serum Samples Collected during the COVID-19 Pandemic in Hong Kong and Korea. Viruses, 15 (2). 582.

George, Uwem, George, Oluwadamilola, Oragwa, Arthur, Motayo, Babatunde, Kamani, Joshua, Adamu, Andrew, Sowemimo, Oluyomi, Adeleke, Richard, Abalaka, Samson, Sani, Nuhu, Oguzie, Judith, Eromon, Philomena, Folarin, Onikepe, Happi, Anise, Komolafe, Isaac, and Happi, Christian (2022) Detection of Alpha- and Betacoronaviruses in Frugivorous and Insectivorous Bats in Nigeria. Pathogens, 11 (9). 1017.

H

He, Lei, Zhang, Yuhao, Jia, Yanyan, Li, Zedian, Li, Jing, Shang, Ke, Ding, Ke, Yu, Haotong, and Sarker, Subir (2023) A novel pathogenic avipoxvirus infecting oriental turtle dove (Streptopelia orientalis) in China shows a high genomic and evolutionary proximity with the pigeon avipoxviruses isolated globally. Microbiology Spectrum, 11 (5).

Hayakijkosol, Orachun, Jaroenram, Wansadaj, Owens, Leigh, and Elliman, Jennifer (2021) Reverse transcription polymerase chain reaction (RT-PCR) detection for Australian Cherax reovirus from redclaw crayfish (Cherax quadricarinatus). Aquaculture, 530. 735881.

Hall-Mendelin, Sonja, Pyke, Alyssa T., Moore, Peter R., Mackay, Ian M., McMahon, Jamie L., Ritchie, Scott A., Taylor, Carmel T., Moore, Frederick A.J., and van den Hurk, Andrew F. (2016) Assessment of local mosquito species incriminates Aedes aegypti as the potential vector of zika virus in Australia. PLoS Neglected Tropical Diseases, 10 (9). e0004959. pp. 1-14.

Huang, Bixing, Firth, Cadhla, Watterson, Daniel, Allcock, Richard, Colmant, Agathe M.G., Hobson-Peters, Jody, Kirkland, Peter, Hewitson, Glen, Mcmahon, Jamie, Hall-Mendelin, Sonja, van den Hurk, Andrew F., and Warrilow, David (2016) Genetic characterization of archived bunyaviruses and their potential for emergence in Australia. Emerging Infectious Diseases, 22 (5). pp. 833-840.

J

Jones, Karina, Limpus, Colin J., Brodie, Jon, Jones, Rhondda, Read, Mark, Shum, Edith, Bell, Ian P., and Ariel, Ellen (2022) Spatial distribution of fibropapillomatosis in green turtles along the Queensland coast and an investigation into the influence of water quality on prevalence. Conservation Science and Practice, 4 (8). e12755.

Jaroenram, Wansadaj, Hayakijkosol, Orachun, Owens, Leigh, and Elliman, Jennifer (2021) Establishing a gold standard method for the detection of Cherax reovirus using reverse transcriptase, quantitative, polymerase chain reaction. Journal of Virological Methods, 293. 114169.

Jaroenram, Wansadaj, Owens, Leigh, Hayakijkosol, Orachun, and Elliman, Jennifer (2021) Natural, in ovo, vertical transmission of the RNA viruses, Chequa iflavirus and Athtab bunyavirus, but not Cherax reovirus in redclaw crayfish (Cherax quadricarinatus). Aquaculture, 534. 736285.

Jones, K., Burgess, G., Budd, A.M., Huerlimann, R., Mashkour, N., and Ariel, E. (2020) Molecular evidence for horizontal transmission of chelonid alphaherpesvirus 5 at green turtle (Chelonia mydas) foraging grounds in Queensland, Australia. PLoS ONE, 15 (1). e0227268.

K

Klukowski, Natalie, Eden, Paul, Uddin, Muhammad Jasim, and Sarker, Subir (2024) Virome of Australia's most endangered parrot in captivity evidenced of harboring hitherto unknown viruses. Microbiology Spectrum, 12 (1). 03052-23.

Kim, Dae-Yun, Hii, Jeffrey, and Chareonviriyaphap, Theeraphap (2023) Transfluthrin and Metofluthrin as Effective Repellents against Pyrethroid-Susceptible and Pyrethroid-Resistant Aedes aegypti (L.) (Diptera: Culicidae). Insects, 14 (9). 767.

Kasimov, Vasilli, Wille, Michelle, Sarker, Subir, Dong, Yalun, Shao, Renfu, Hall, Clancy, Potvin, Dominique, Conroy, Gabriel, Valenza, Ludovica, Gillett, Amber, Timms, Peter, and Jelocnik, Martina (2023) Unexpected Pathogen Diversity Detected in Australian Avifauna Highlights Potential Biosecurity Challenges. Viruses, 15 (1). 143.

L

Laffy, Patrick W., Wood-Charlson, Elisha M., Turaev, Dmitrij, Jutz, Sabrina, Pascelli, Cecilia, Botté, Emmanuelle S., Bell, Sara C., Peirce, Tyler E., Weynberg, Karen D., van Oppen, Madeleine J.H., Rattei, Thomas, and Webster, Nicole S. (2018) Reef invertebrate viromics: diversity, host specificity and functional capacity. Environmental Microbiology, 20 (6). pp. 2125-2141.

Loiseau, C., Requena, M., Mavigner, M., Cazabat, M., Carrere, N., Suc, B., Barange, K., Alric, L., Marchou, B., Massip, P., Izopet, J., and Delobel, P. (2016) CCR6− regulatory T cells blunt the restoration of gut Th17 cells along the CCR6–CCL20 axis in treated HIV-1-infected individuals. Mucosal Immunology, 9 (5). pp. 1137-1150.

N

Nath, Babu Kanti, Das, Tridip, Peters, Andrew, Gupta, Suman Das, Sarker, Subir, Forwood, Jade K., Raidal, Shane R., and Das, Shubhagata (2023) Australasian Pigeon Circoviruses Demonstrate Natural Spillover Infection. Viruses, 15 (10). 2025.

Nambiar, Geetika, Owens, Leigh, and Elliman, Jennifer (2023) Cherax quadricarinatus Resistant to Chequa iflavirus: A Pilot Study. Microorganisms, 11 (3). 578.

O

Owens, Leigh (2023) Abolishment of spawner-isolated mortality virus and where the remaining science leads. Journal of General Virology, 104 (8). 001878.

Ogunlade, Samson Tosin (2023) Modeling the potential of introducing different Wolbachia-infected mosquitoes to control Aedes-borne arboviral infections. PhD thesis, James Cook University.

Ogunlade, Samson T., Adekunle, Adeshina I., Meehan, Michael T., and McBryde, Emma S. (2023) Quantifying the impact of Wolbachia releases on dengue infection in Townsville, Australia. Scientific Reports, 13. 14932.

P

Pascelli, Cecilia, Laffy, Patrick W., Botté, Emmanuelle, Kupresanin, Marija, Rattei, Thomas, Lurgi, Miguel, Ravasi, Timothy, and Webster, Nicole S. (2020) Viral ecogenomics across the Porifera. Microbiome, 8. 144.

R

Rusaini, and Owens, Leigh (2019) The effect of viral infection on the relationship between the LOS cells and moulting stages of the black tiger prawn (Penaeus monodon). Aquaculture, Aquarium, Conservation and Legislation, 12 (4). pp. 1087-1101.

Ramanathan, Babu, Poh, Chit Laa, Kirk, Kristin, McBride, William John Hannan, Aaskov, John, and Grollo, Lara (2016) Synthetic B-cell epitopes eliciting cross-neutralizing antibodies: strategies for future dengue vaccine. PLoS ONE, 11 (5). e0155900. pp. 1-22.

S

Sarker, Subir, and Phalen, David (2023) Detection of a Novel Alphaherpesvirus and Avihepadnavirus in a Plantar Papilloma from a Rainbow Lorikeet (Trichoglosis moluccanus). Viruses, 15 (10). 2106.

Sarker, Subir, and Raidal, Shane R. (2023) A Novel Pathogenic Avipoxvirus Infecting Vulnerable Cook’s Petrel (Pterodroma cookii) in Australia Demonstrates a High Genomic and Evolutionary Proximity with South African Avipoxviruses. Microbiology Spectrum, 11 (2).

Sarker, Subir (2022) Special Issue: Emerging Wildlife Viral Diseases. Viruses, 14 (4). 807.

Snape, Natale, Anderson, Gary P., Irving, Louis B., Jarnicki, Andrew G., Hurt, Aeron C., Collins, Tina, Xi, Yang, and Upham, John W. (2022) Vaccine strain affects seroconversion after influenza vaccination in COPD patients and healthy older people. NPJ Vaccines, 7. 8.

Sarker, Subir, Athukorala, Ajani, Bowden, Timothy R., and Boyle, David B. (2021) Characterisation of an Australian fowlpox virus carrying a near-full-length provirus of reticuloendotheliosis virus. Archives of Virology, 166 (5). pp. 1485-1488.

Sarker, Nishat, Fabijan, Jessica, Seddon, Jennifer, Tarlinton, Rachael, Owen, Helen, Simmons, Greg, Thia, Joshua, Blanchard, Adam Mark, Speight, Natasha, Kaler, Jasmeet, Emes, Richard David, Woolford, Lucy, Trott, Darren, Hemmatzadeh, Farhid, and Meers, Joanne (2021) Genetic diversity of Koala retrovirus env gene subtypes: insights into northern and southern koala populations. Journal of General Virology, 100 (9). pp. 1328-1339.

Sarker, Nishat, Tarlinton, Rachael, Owen, Helen, David Emes, Richard, Seddon, Jennifer, Simmons, Greg, and Meers, Joanne (2020) Novel insights into viral infection and oncogenesis from koala retrovirus (KoRV) infection of HEK293T cells. Gene, 733. 144366.

Sakuna, Kitikarn, Elliman, Jennifer, and Owens, Leigh (2018) Comparison of molecular detection PCR methods for chequa iflavirus in freshwater crayfish, Cherax quadricarinatus. Journal of Virological Methods, 251. pp. 139-144.

Sarker, N., Fabijan, J., Emes, R.D., Hemmatzadeh, F., Meers, J., Moreton, J., Owen, H., Seddon, J.M., Simmons, G., Speight, N., Trott, D., Woolford, L., and Tarlinton, R.E. (2018) Identification of stable reference genes for quantitative PCR in koalas. Scientific Reports, 8 (1). 3364.

Sakuna, Kitikarn, Elliman, Jennifer, and Owens, Leigh (2018) Therapeutic trials against pre-existing Chequa iflavirus in redclaw crayfish (Cherax quadricarinatus). Aquaculture, 492. pp. 9-14.

Snape, Natale, Li, Dongshe, Wei, Ting, Jin, Hongping, Lor, Mary, Rawle, Daniel J., Spann, Kirsten M., and Harrich, David (2018) The eukaryotic translation elongation factor 1A regulation of actin stress fibers is important for infectious RSV production. Virology Journal, 15. 182.

Sakuna, Kitikarn, Elliman, Jennifer, Tzamouzaki, Anna, and Owens, Leigh (2018) A novel virus (order Bunyavirales) from stressed redclaw crayfish (Cherax quadricarinatus) from farms in northern Australia. Virus Research, 250. pp. 7-12.

Sakuna, Kitikarn, Elliman, Jennifer, and Owens, Leigh (2017) Assessment of a cricket, Acheta domesticus, bioassay for Chequa Iflavirus and bunya-like virus from redclaw crayfish Cherax quadricarinatus. Journal of Invertebrate Pathology, 150. pp. 41-44.

Sakuna, Kitikarn, Elliman, Jennifer, and Owens, Leigh (2017) Discovery of a novel Picornavirales, Chequa iflavirus, from stressed redclaw crayfish (Cherax quadricarinatus) from farms in northern Queensland, Australia. Virus Research, 238. pp. 148-155.

Sarker, Subir, Wang, Yinan, Warren-Smith, Brenden, and Helbig, Karla J. (2017) Dynamic changes in host gene expression following in vitro viral mimic stimulation in crocodile cells. Frontiers in Immunology, 8. 1634.

Syahidah, D., Elliman, J., Constantinoiu, C., and Owens, L. (2017) Mosquito cells (C6/36) fail to support the complete replication of Penaeus merguiensis hepandensovirus. Journal of Invertebrate Pathology, 145. pp. 31-38.

Sarker, Subir, Das, Shubhagata, Helbig, Karla, and Raidal, Shane R. (2016) Identification of beak and feather disease virus in an unusual novel host (Merops ornatus) using nested PCR. Genome Announcements, 4 (6). e0137616.

Sarker, Subir, Terrón, María C., Khandokar, Yogesh, Aragão, David, Hardy, Joshua M., Radjainia, Mazdak, Jiménez-Zaragoza, Manuel, De Pablo, Pedro J., Coulibaly, Fasséli, Luque, Daniel, Raidal, Shane R., and Forwood, Jade K. (2016) Structural insights into the assembly and regulation of distinct viral capsid complexes. Nature Communications, 7. 13014.

Sarker, Subir, Ghorashi, Seyed A., Forwood, Jade K., Bent, Stephen J., Peters, Andrew, and Raidal, Shane R. (2014) Phylogeny of beak and feather disease virus in cockatoos demonstrates host generalism and multiple-variant infections within Psittaciformes. Virology, 460-461. pp. 72-82.

V

Vanderven, Hillary A., and Kent, Stephen J. (2023) Fc-mediated functions and the treatment of severe respiratory viral infections with passive immunotherapy – a balancing act. Frontiers in Immunology, 14. 1307398.

Van Brussel, Kate, Mahar, Jackie E., Ortiz-Baez, Ayda Susana, Carrai, Maura, Spielman, Derek, Boardman, Wayne S.J., Baker, Michelle L., Beatty, Julia A., Geoghegan, Jemma L., Barrs, Vanessa R., and Holmes, Edward C. (2022) Faecal virome of the Australian grey-headed flying fox from urban/ suburban environments contains novel coronaviruses, retroviruses and sapoviruses. Virology, 576. pp. 42-51.

Van Brussel, Kate, Wang, Xiuwan, Shi, Mang, Carrai, Maura, Feng, Shuo, Li, Jun, Holmes, Edward C., Beatty, Julia A., and Barrs, Vanessa R. (2022) The enteric virome of cats with feline panleukopenia differs in abundance and diversity from healthy cats. Transboundary and Emerging Diseases, 69 (5). e2952-e2966.

Viennet, Elvina, Ritchie, Scott A., Williams, Craig R., Faddy, Helen M., and Harley, David (2016) Public health responses to and challenges for the control of dengue transmission in high-income countries: four case studies. PLoS Neglected Tropical Diseases, 10 (9). e0004943. pp. 1-33.

W

Wang, Xiuwan, Carrai, Maura, Van Brussel, Kate, Feng, Shuo, Beatty, Julia A., Shi, Mang, Holmes, Edward C., Li, Jun, and Barrs, Vanessa R. (2022) Low Intrahost and Interhost Genetic Diversity of Carnivore Protoparvovirus 1 in Domestic Cats during a Feline Panleukopenia Outbreak. Viruses, 14 (7). pp. 1412-1422.

Webb, Rebecca J., Roberts, Alexandra A., Wylie, Stephen, Kosch, Tiffany, Toledo, Luís Felipe, Merces, Marcia, Skerratt, Lee F., and Berger, Lee (2022) Non-detection of mycoviruses in amphibian chytrid fungus (Batrachochytrium dendrobatidis) from Australia. Fungal Biology, 126 (1). pp. 75-81.

Wilkinson, Adam (2021) Investigating potential co-factors of Fibropapillomatosis development in Chelonia mydas of the Great Barrier Reef. PhD thesis, James Cook University.

Williams, Simon H., Che, Xiaoyu, Oleynik, Alexandra, Garcia, Joel A., Muller, Dorothy, Zabka, Tanja, Firth, Cadhla, Corrigan, Robert M., Briese, Thomas, Jain, Komal, and Lipkin, W. Ian (2019) Discovery of two highly divergent negative-sense RNA viruses associated with the parasitic nematode, Capillaria hepatica, in wild Mus musculus from New York City. Journal of General Virology, 100 (10). pp. 1350-1362.

Walsh, Ramona, La Fauce, Kathy, Crockford, Melanie , Jones, Brian, and Owens, Leigh (2017) Genomic heterogeneity and prevalence of hepandensovirus in Penaeus esculentus from Western Australia, and P. merguiensis from the Gulf of Carpentaria, Australia. Aquaculture, 471. pp. 43-48.