A

Andrello, Marco, Bevacqua, Daniele, Maes, Gregory E., and De Leo, Giulio A. (2011) An integrated genetic-demographic model to unravel the origin of genetic structure in European eel (Anguilla anguilla L.). Evolutionary Applications, 4 (4). pp. 517-533.

Als, Thomas D., Hansen, Michael M., Maes, Gregory E., Castonguay, Martin, Riemann, Lasse, Aarestrup, Kim, Munk, Peter, Sparholt, Henrik, Hanel, Reinhold, and Bernatchez, Louis (2011) All roads lead to home: panmixia of European eel in the Sargasso Sea. Molecular Ecology, 20 (7). pp. 1333-1346.

Awruch, C.A., Simpfendorfer, C., and Pankhurst, N.W. (2011) Evaluation and use of a portable field kit for measuring whole-blood lactate in sharks. Marine and Freshwater Research, 62 (6). pp. 694-699.

Abesamis, R.A., and Russ, G.R. (2010) Patterns of recruitment of coral reef fishes in a monsoonal environment. Coral Reefs, 29 (4). pp. 911-921.

Almany, G.R., Hamilton, R.J., Williamson, D.H., Evans, R.D., Jones, G.P., Matawai, M., Potuku, T., Rhodes, K.L., Russ, G.R., and Sawynock, B. (2010) Research partnerships with local communities: two case studies from Papua New Guinea and Australia. Coral Reefs, 29 (3). pp. 567-576.

Abrantes, Katya, and Sheaves, Marcus (2008) Incorporation of terrestrial wetland material into aquatic food webs in a tropical estuarine wetland. Estuarine, Coastal and Shelf Science , 80 (3). pp. 401-412.

Al-Habsi, S. H., Sweeting, C. J., Polunin, N. V. C., and Graham, Nicholas (2008) δ15N and δ13C elucidation of size structured food webs in a Western Arabian Sea demersal trawl assemblage. Marine Ecology Progress Series, 353. pp. 55-63.

B

Baje, Leontine, Smart, Jonathan J., Grant, Michael I., Chin, Andrew, White, William T., and Simpfendorfer, Colin A. (2019) Age, growth and maturity of the Australian blackspot shark (Carcharhinus coatesi) in the Gulf of Papua. Pacific Conservation Biology, 25 (4). pp. 403-412.

Bradley, Michael, Baker, Ronald, Nagelkerken, Ivan, and Sheaves, Marcus (2019) Context is more important than habitat type in determining use by juvenile fish. Landscape Ecology, 34. pp. 427-442.

Baker, Ronald, Barnett, Adam, Bradley, Michael, Abrantes, Katya, and Sheaves, Marcus (2019) Contrasting seascape use by a coastal fish assemblage: a multi-method approach. Estuaries and Coasts, 42 (1). pp. 292-307.

Bode, Michael, Leis, Jeffrey M., Mason, Luciano B., Williamson, David H., Harrison, Hugo B., Choukroun, Severine, and Jones, Geoffrey P. (2019) Successful validation of a larval dispersal model using genetic parentage data. PLoS Biology, 17 (7). e3000380.

Baje, Leontine Immoine (2019) The biology and ecology of carcharhiniform sharks in the Gulf of Papua prawn trawl fishery. PhD thesis, James Cook University.

Baje, Leontine, Smart, Jonathan J., Chin, Andrew, White, William T., and Simpfendorfer, Colin A. (2018) Age, growth and maturity of the Australian sharpnose shark Rhizoprionodon taylori from the Gulf of Papua. PLoS ONE, 13 (10). e0206581.

Bode, Michael, Williamson, David H., Harrison, Hugo B., Outram, Nick, and Jones, Geoffrey P. (2018) Estimating dispersal kernels using genetic parentage data. Methods in Ecology and Evolution, 9. pp. 490-501.

Bernatchez, Louis, Wellenreuther, Maren, Araneda, Cristián, Ashton, David T., Barth, Julia M.I., Beacham, Terry D., Maes, Gregory E., Martinsohn, Jann T., Miller, Kristina M., Naish, Kerry A., Ovenden, Jennifer R., Primmer, Craig R., Suk, Ho Young, Therkildsen, Nina O., and Withler, Ruth E. (2017) Harnessing the power of genomics to secure the future of seafood. Trends in Ecology and Evolution, 32 (9). pp. 665-680.

Buckley, Sarah M., Thurstan, Ruth H., Tobin, Andrew, and Pandolfi, John M. (2017) Historical spatial reconstruction of a spawning-aggregation fishery. Conservation Biology, 31 (6). pp. 1322-1332.

Benzeev, Rayna, Hutchinson, Neil, and Friess, Daniel A. (2017) Quantifying fisheries ecosystem services of mangroves and tropical artificial urban shorelines. Hydrobiologia, 803 (1). pp. 225-237.

Barnett, A., Braccini, M., Dudgeon, C.L., Payne, N.L., Abrantes, K.G., Sheaves, M., and Snelling, E.P. (2017) The utility of bioenergetics modelling in quantifying predation rates of marine apex predators: ecological and fisheries implications. Scientific Reports, 7. 12982.

Belpaire, Claude, Pujolar, José Martin, Geeraerts, Caroline, and Maes, Gregory E. (2016) Contaminants in eels and their role in the collapse of the eel stocks. In: Arai, Takaomi, (ed.) Biology and Ecology of Anguillid Eels. CRC Press, Boca Raton, FL, USA, pp. 225-250.

Barrios-Garrido, Hector, and Montiel-Villalobos, María G. (2016) Strandings of Leatherback turtles (Dermochelys coriacea) along the western and southern coast of the Gulf of Venezuela. Herpetological Conservation and Biology, 11 (1). pp. 244-252.

Basiita, Rose K., Zenger, Kyall R., Mwanja, Matthew T., and Jerry, Dean R. (2015) Development of genome-wide microsatellite genetic resources in a commercially important African freshwater fish species – the Nile perch, Lates niloticus. Animal Genetics, 46 (3). p. 340.

Brookes, Justin D., Aldridge, Kane T., Bice, Chris M., Deegan, Brian, Ferguson, Greg J., Paton, David C., Sheaves, Marcus, Ye, Qifeng, and Zampatti, Brenton P. (2015) Fish productivity in the lower lakes and Coorong, Australia, during severe drought. Transactions of the Royal Society of South Australia, 139 (2). pp. 189-215.

Busilacchi, Sara, Russ, Garry R., Williams, Ashley J., Sutton, Stephen G., and Begg, Gavin A. (2013) The role of subsistence fishing in the hybrid economy of an indigenous community. Marine Policy, 37. pp. 183-191.

Busilacchi, Sara, Russ, Garry R., Williams, Ashley J., Begg, Gavin A., and Sutton, Stephen G. (2013) Quantifying changes in the subsistence reef fishery of indigenous communities in Torres Strait, Australia. Fisheries Research, 137. pp. 50-58.

Bijoux, Jude, Dagorn, Laurent, Cowley, Paul D., Simier, Monique, Adam, Pierre-André, and Robinson, Jan (2013) Spawning aggregation dynamics of brown-marbled grouper and camouflage grouper at a remote Indian Ocean atoll. Endangered Species Research, 22 (2). pp. 145-157.

Ballagh, Aaron C., Welch, David J., Newman, Stephen J., Allsop, Quentin, and Stapley, Jason M. (2012) Stock structure of the blue threadfin (Eleutheronema tetradactylum) across northern Australia derived from life-history characteristics. Fisheries Research, 121-122. pp. 63-72.

Boukouvala, Evridiki, Cariani, Alessia, Maes, Gregory E., Sevilla, Rafael G., Verrez-Bagnis, Veronique, Jerome, Marc, Guarniero, Ilaria, Monios, Georgios, Tinti, Fausto, Volckaert, Filip A.M., Bautista, Jose M., and Krey, Grigorios (2012) Restriction fragment length analysis of the cytochrome b gene and muscle fatty acid composition differentiate the cryptic flatfish species Solea solea and Solea aegyptiaca. Journal of Agricultural and Food Chemistry, 60 (32). pp. 7941-7948.

Busilacchi, S., Williams, A.J., Russ, G.R., and Begg, G.A. (2012) Complexity of applying minimum legal sizes (MLS) of retention in an indigenous coral reef fishery. Fisheries Management and Ecology.

Broderick, D., Ovenden, J.R., Buckworth, R.C., Newman, S.J., Lester, R.J.G., and Welch, D.J. (2011) Genetic population structure of grey mackerel Scomberomorus semifasciatus in northern Australia. Journal of Fish Biology, 79 (3). pp. 633-661.

Bednarek, Angela T., Cooper , Andrew B., Cresswell, Katherine A., Mangel, Marc, Satterthwaite, William H., Simpfendorfer, Colin A., and Wiedenmann, John R. (2011) The certainty of uncertainty in marine conservation and what to do about it. Bulletin of Marine Science, 87 (2). pp. 177-195.

Bang Jensen, Britt, Holopainen, Riikka, Tapiovaara, Hannele, and Ariel, Ellen (2011) Susceptibility of pike-perch Sander lucioperca to a panel of ranavirus isolates. Aquaculture, 313 (1-4). pp. 24-30.

Ballagh, Aaron C., Welch, David, Williams, Ashley J., Mapleston, Amos, Tobin, Andrew, and Marton, Nicholas (2011) Integrating methods for determining length-at-age to improve growth estimates for two large scombrids. Fishery Bulletin, 109 (1). pp. 90-100.

Babcock, R.C., Shears, N.T., Alcala, A.C., Barrett, N.S., Edgar, G.J., Lafferty, K.D., McClanahan, T.R., and Russ, G.R. (2010) Decadal trends in marine reserves reveal differential rates of change in direct and indirect effects. Proceedings of the National Academy of Sciences of the United States of America, 107 (43). pp. 18256-18261.

Brown, I., Sumpton, W., McLennan, M., Mayer, D., Campbell, M., Kirkwood, J., Butcher, A., Halliday, I., Mapleston, A., Welch, D., Begg, G.A., and Sawynok, B. (2010) An improved technique for estimating short-term survival of released line-caught fish, and an application comparing barotrauma-relief methods in red emperor (Lutjanus sebae Cuvier 1816). Journal of Experimental Marine Biology and Ecology, 385 (1-2). pp. 1-7.

Barba, Jacquelyn (2010) Demography of parrotfish: age, size and reproductive variables. Masters (Research) thesis, James Cook University.

Balston, Jacqueline (2009) An analysis of the impacts of long-term climate variability on the commercial barramundi (Lates calcarifer) fishery of north-east Queensland, Australia. Fisheries Research, 99 (2). pp. 83-89.

Balston, Jacqueline (2009) Short-term climate variability and the commercial barramundi (Lates calcarifer) fishery of north-east Queensland, Australia. Marine and Freshwater Research, 60 (9). pp. 912-923.

Brown, I.W., Sumpton, W.D., McLennan, M., Welch, D.J., Kirkwood, J., Butcher, A., Mapleston, A., Mayer, D., Begg, G., Campbell, M., Halliday, I., and Sawynok, W. (2008) National Strategy for the Survival of Released Line-Caught Fish: tropical reef species (FRDC 2003/019). Report. Department of Primary Industries and Fisheries.

Busilacchi, Sara (2008) The subsistence coral reef fish fishery in the Torres Strait: monitoring protocols and assessment. PhD thesis, James Cook University.

Burgess, George H., Beerkircher, Lawrence R., Cailliet, Gregor M., Carlson, John K., Cortes, Enric, Goldman, Kenneth J., Grubbs, R. Dean, Musick, John A., Musyl, Michael K., and Simpfendorfer, Colin A. (2005) Is the collapse of shark populations in the Northwest Atlantic Ocean and Gulf of Mexico real? Fisheries, 30 (10). pp. 19-26.

C

Currey-Randall, Leanne M., Cappo, Mike, Simpfendorfer, Colin A., Farabaugh, Naomi F., and Heupel, Michelle R. (2020) Optimal soak times for Baited Remote Underwater Video Station surveys of reef-associated elasmobranchs. PLoS One, 15 (5). e0231688.

Chin, A., Cameron, D., and Saunders, R. (2019) Fisheries of the Great Barrier Reef. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Melbourne, VIC, Australia, pp. 117-130.

Campbell, Matthew J., McLennan, Mark F., Courtney, Anthony J., and Simpfendorfer, Colin A. (2018) Post-release survival of two elasmobranchs, the eastern shovelnose ray (Aptychotrema rostrata) and the common stingaree (Trygonoptera testacea), discarded from a prawn trawl fishery in southern Queensland, Australia. Marine and Freshwater Research, 69 (4). pp. 551-561.

Chin, A., Simpfendorfer, C.A., White, W.T., Wardell, G.J., McAuley, R.B., and Heupel, M.R. (2017) Crossing lines: a multidisciplinary framework for assessing connectivity of hammerhead sharks across jurisdictional boundaries. Scientific Reports, 7. 46061.

Clifton, Julian, and Foale, Simon (2017) Extracting ideology from policy: analysing the social construction of conservation priorities in the Coral Triangle region. Marine Policy, 82. pp. 189-196.

Chin, Andrew, Heupel, Michelle R., Simpfendorfer, Colin A., and Tobin, Andrew J. (2016) Population organisation in reef sharks: new variations in coastal habitat use by mobile marine predators. Marine Ecology Progress Series, 544. pp. 197-211.

Currey, Leanne M., Heupel, Michelle R., Simpfendorfer, Colin A., and Williams, Ashley J. (2015) Assessing environmental correlates of fish movement on a coral reef. Coral Reefs, 34 (4). pp. 1267-1277.

Chin, Andrew, Mourier, Johann, and Rummer, Jodie L. (2015) Blacktip reef sharks (Carcharhinus melanopterus) show high capacity for wound healing and recovery following injury. Conservation Physiology, 3 (1). cov062. pp. 1-9.

Currey, Leanne Margaret (2015) Movement of an exploited coral reef teleost across multiple temporal and spatial scales. PhD thesis, James Cook University.

Carlson, John K., and Simpfendorfer, Colin A. (2015) Recovery potential of smalltooth sawfish, Pristis pectinata, in the United States determined using population viability models. Aquatic Conservation: marine and freshwater ecosystems , 25 (2). pp. 187-200.

Carter, Alex B. (2015) Spatial variation in female reproduction for an exploited coral reef fish, Plectropomus leopardus. PhD thesis, James Cook University.

Carlson, J.K., Gulak, S.J.B., Simpfendorfer, C.A., Grubbs, R.D., Romine, J.G., and Burgess, G.H. (2014) Movement patterns and habitat use of smalltooth sawfish, Pristis pectinata, determined using pop-up satellite archival tags. Aquatic Conservation: marine and freshwater ecosystems , 24 (1). pp. 104-117.

Cooke , Steven J., Messmer, Vanessa, Tobin, Andrew J., Pratchett, Morgan S., and Clark, Timothy D. (2014) Refuge-seeking impairments mirror metabolic recovery following fisheries-related stressors in the Spanish flag snapper (Lutjanus carponotatus) on the Great Barrier Reef. Physiological and Biochemical Zoology, 87 (1). pp. 136-147.

Currey, Leanne M., Heupel, Michelle R., Simpfendorfer, Colin A., and Williams, Ashley J. (2014) Sedentary or mobile? Variability in space and depth use of an exploited coral reef fish. Marine Biology, 161 (9). pp. 2155-2166.

Currey, L.M., Heupel, M.R., Simpfendorfer, C.A., and Clark, T.D. (2013) Blood lactate loads of redthroat emperor Lethrinus miniatus associated with angling stress and exhaustive exercise. Journal of Fish Biology, 83 (5). pp. 1401-1406.

Currey, L.M., Williams, A.J., Mapstone, B.D., Davies, C.R., Carlos, G., Welch, D.J., Simpfendorfer, C.A., Ballagh, A.C., Penny, A.L., Grandecourt, E.M., Mapleston, A., Wiebkin, A.S., and Bean, K. (2013) Comparative biology of tropical Lethrinus species (Emperors): challenges for multi-species management. Journal of Fish Biology, 82 (3). pp. 764-788.

Chin, A., Heupel, M.R., Simpfendorfer, C.A., and Tobin, A.J. (2013) Ontogenetic movements of juvenile blacktip reef sharks: evidence of dispersal and connectivity between coastal habitats and coral reefs. Aquatic Conservation, 23 (3). pp. 468-474.

Chin, Andrew, Simpfendorfer, Colin, Tobin, Andrew, and Heupel, Michelle (2013) Validated age, growth and reproductive biology of Carcharhinus melanopterus, a widely distributed and exploited reef shark. Marine and Freshwater Research, 64 (10). pp. 965-975.

Chin, Andrew (2013) The biology and ecology of the blacktip reef shark Carcharhinus melanopterus (Quoy & Gaimard, 1824) and implications for management. PhD thesis, James Cook University.

Cohen, Philippa Jane (2013) The contribution of locally managed marine areas to small-scale fisheries and food security: a Solomon Islands case study. PhD thesis, James Cook University.

Chang, Mei-Yu, Geffen, Audrey J., Kosler, Jan, Dundas, Siv Hjorth, FishPop Trace Consortium, and Maes, Gregory E. (2012) The effect of ablation pattern on LA-ICPMS analysis of otolith element composition in hake, Merluccius merluccius. Environmental Biology of Fishes, 95 (4). pp. 509-520.

Chin, Andrew, Tobin, Andrew, Simpfendorfer, Colin, and Heupel, Michelle (2012) Reef sharks and inshore habitats: patterns of occurrence and implications for vulnerability. Marine Ecology Progress Series, 460. pp. 115-125.

Cuveliers, E.L., Larmuseau, M.H.D., Hellemans, B., Verherstraeten, S.L.N.A., Volckaert, F.A.M., and Maes, G.E. (2012) Multi-marker estimate of genetic connectivity of sole (Solea solea) in the North-East Atlantic Ocean. Marine Biology, 159 (6). pp. 1239-1253.

Chapman, Demian S., Simpfendorfer, Colin A., Wiley, Tonya R., Poulakis, Gregg R., Curtis, Caitlin, Tringali, Michael, Carlson, John K., and Feldheim, Kevin A. (2011) Genetic diversity despite population collapse in a critically endangered marine fish: the smalltooth sawfish (Pristis pectinata). Journal of Heredity, 102 (6). pp. 643-652.

Cuveliers, E.L., Volckaert, F.A.M., Rijnsdorp, A.D., Larmuseau, M.H.D., and Maes, G.E. (2011) Temporal genetic stability and high effective population size despite fisheries-induced life-history trait evolution in the North Sea sole. Molecular Ecology, 20 (17). pp. 3555-3568.

Cuveliers, E.L., Geffen, A.J., Guelinckx, J., Raeymaekers, J.A.M., Skadal, J., Volckaert, F.A.M., and Maes, G.E. (2010) Microchemical variation in juvenile Solea solea otoliths as a powerful tool for studying connectivity in the North Sea. Marine Ecology Progress Series, 401. pp. 211-220.

Cortés, Enric, Arocha, Freddy, Beerkircher, Lawrence, Carvalho, Felipe, Domingo, Andrés, Heupel, Michelle, Holtzhausen, Hannes, Santos, Miguel N., Ribera, Marta, and Simpfendorfer, Colin (2010) Ecological risk assessment of pelagic sharks caught in Atlantic pelagic longline fisheries. Aquatic Living Resources, 23 (1). pp. 25-34.

Coppe, Alessandro, Pujolar, Jose Martin, Maes, Gregory E., Larsen, Peter F., Hansen, Michael M., Bernatchez, Louis, Zane, Lorenzo, and Bortoluzzi, Stefania (2010) Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel. BMC Genomics, 11. 635. pp. 1-13.

Charters, Robbie A., Lester, Robert J.G., Buckworth, Rik C., Newman, Stephen J., Ovenden, Jennifer R., Broderick, Damien, Kravchuck, Olena, Ballagh, Aaron, and Welch, David J. (2010) The stock structure of grey mackerel Scomberomorus semifasciatus in Australia as inferred from its parasite fauna. Fisheries Research, 101 (1-2). pp. 94-99.

Carter, A.B., Williams, A.J., and Russ, G.R. (2009) Increased accuracy of batch fecundity estimates using oocyte stage ratios in Plectropomus leopardus. Journal of Fish Biology, 75 (3). pp. 716-722.

Cuveliers, E.L., Bolle, L.J., Volckaert, F.A.M., and Maes, G.E. (2009) Influence of DNA isolation from historical otoliths on nuclear–mitochondrial marker amplification and age determination in an overexploited fish, the common sole (Solea solea L.). Molecular Ecology Resources, 9 (3). pp. 725-732.

D

D'Alberto, Brooke M., Carlson, John K., Pardo, Sebastián, and Simpfendorfer, Colin A. (2019) Population productivity of shovelnose rays: inferring the potential for recovery. PLoS ONE, 14 (11). e0225183.

do Prado, Fernanda Dotti, Vera, Manuel, Hermida, Miguel, Bouza, Carmen, Pardo, Belén G., Vilas, Román, Blanco, Andrés, Fernández, Carlos, Maroso, Francesco, Maes, Gregory E., Turan, Cemal, Volckaert, Filip A.M., Taggart, John B., Carr, Adrian, Ogden, Rob, Nielsen, Einar Eg, Aquatrace, Consortium, and Martínez, Paulino (2018) Parallel evolution and adaptation to environmental factors in a marine flatfish: implications for fisheries and aquaculture management of the turbot (Scophthalmus maximus). Evolutionary Applications, 11 (8). pp. 1322-1341.

Dulvy, Nicholas K., Simpfendorfer, Colin A., Davidson, Lindsay N.K., Fordham, Sonja V., Bräutigam, Amie, Sant, Glenn, and Welch, David J. (2017) Challenges and priorities in shark and ray conservation. Current Biology, 27 (11). R565-R572.

D'Alberto, Brooke M., Chin, Andrew, Smart, Jonathan J., Baje, Leontine, White, William, and Simpfendorfer, Colin A. (2017) Age, growth and maturity of oceanic whitetip shark (Carcharhinus longimanus) from Papua New Guinea. Marine and Freshwater Research, 68 (6). pp. 1118-1129.

Dulvy, Nicholas K., Davidson, Lindsay N.K., Kyne, Peter M., Simpfendorfer, Colin, Harrison, Lucy R., Carlson, John K., and Fordham, Sonja V. (2016) Ghosts of the coast: global extinction risk and conservation of sawfishes. Aquatic Conservation: marine and freshwater ecosystems , 26 (1). pp. 134-153.

Drew, M., White, W.T., Dharmadi, Harry, A.V., and Huveneers, C. (2015) Age, growth and maturity of the pelagic thresher Alopias pelagicusand the scalloped hammerhead Sphyrna lewini. Journal of Fish Biology, 86 (1). pp. 333-354.

Diopere, Eveline, Hellemans, Bart, Volckaert, Filip A.M., and Maes, Gregory E. (2013) Identification and validation of single nucleotide polymorphisms in growth- and maturation-related candidate genes in sole (Solea solea L.). Marine Genomics, 9. pp. 33-38.

Dannewitz, Johan, Maes, Gregory E., Johansson, Leif, Wickström, Håkan, Volckaert, Filip A.M., and Järvi, Torbjörn (2005) Panmixia in the European eel: a matter of time... Proceedings of the Royal Society of London Series B, Biological Sciences, 272 (1568). pp. 1129-1137.

Dulvy, N.K, Polunin, N.V.C., Mill, A.C., and Graham, N.A.J. (2004) Size structural change in lightly exploited coral reef fish communities: evidence for weak indirect effects. Canadian Journal of Fisheries and Aquatic Sciences, 61 (3). pp. 446-475.

E

Espinoza, Mario, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2016) Evidence of partial migration in a large coastal predator: opportunistic foraging and reproduction as key drivers? PLoS ONE, 11 (2). e0147608. pp. 1-22.

Emslie, Michael J. (2016) Effects of habitat versus fisheries management on spatio-temperal variation in fish assemblages on the Great Barrier Reef. PhD thesis, James Cook University.

Espinoza, Mario, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2015) Residency patterns and movements of grey reef sharks (Carcharhinus amblyrhynchos) in semi-isolated coral reef habitats. Marine Biology, 162 (2). pp. 343-358.

Espinoza, Mario, Lédée, Elodie J.I., Simpfendorfer, Colin A., Tobin, Andrew J., and Heupel, Michelle R. (2015) Contrasting movements and connectivity of reef-associated sharks using acoustic telemetry: implications for management. Ecological Applications, 25 (8). pp. 2101-2118.

Espinoza, Mario, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2015) Movement patterns of silvertip sharks (Carcharhinus albimarginatus) on coral reefs. Coral Reefs, 34 (3). pp. 807-821.

Espinoza, Mario, Cappo, Mike, Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2014) Quantifying shark distribution patterns and species-habitat associations: implications of marine park zoning. PLoS ONE, 9 (9). e106885. pp. 1-17.

Edmunds, Richard C., Hillersøy, Grethe, Momigliano, Paolo, and Van Herwerden, Lynne (2009) Classic approach revitalizes genomics: complete characterization of a candidate gene for thermal adaptation in two coral reef fishes. Marine Genomics, 2 (3-4). pp. 215-222.

Edmunds, Richard C., van Herwerden, Lynne, Smith-Keune, Carolyn, and Jerry, Dean R. (2009) Comparative characterization of a temperature responsive gene (lactate dehydrogenase-B, ldh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus. International Journal of Biological Sciences, 5 (6). pp. 558-569.

F

Fulton, Christopher J., Berkstrom, Charlotte, Wilson, Shaun K., Abesamis, Rene, Bradley, Michael, Åkerlund, Carolina, Barrett, Luke T., Bucol, Abner A., Chacin, Dinorah H., Chong-Seng, Karen M., Coker, Darren J., Depczynski, Martial, Eggertsen, Linda, Eggertsen, Maria, Ellis, David, Evans, Richard D., Graham, Nicholas A.J., Hoey, Andrew S., Holmes, Thomas H., Kulbicki, Michel, Leung, Priscilla T.Y., Lam, Paul K. S., van Lier, Joshua, Matis, Paloma A., Noble, Mae M., Perez-Matus, Alejandro, Piggott, Camilla, Radford, Ben T., Tano, Stina, and Tinkler, Paul (2020) Macroalgal meadow habitats support fish and fisheries in diverse tropical seascapes. Fish and Fisheries, 21 (4). pp. 700-717.

Frisch, Ashley J., Rizzari, Justin R., Munkres, Katherine P., and Hobbs, Jean Paul A. (2016) Anemonefish depletion reduces survival, growth, reproduction and fishery productivity of mutualistic anemone–anemonefish colonies. Coral Reefs, 35 (2). pp. 375-386.

Fabinyi, Michael, Dressler, Wolfram, and Pido, Michael (2016) Do fish scales matter? diversification and differentiation in seafood commodity chains. Ocean and Coastal Management, 134. pp. 103-111.

Frisch, Ashley J., Cameron, Darren S., Pratchett, Morgan S., Williamson, David H., Williams, Ashley J., Reynolds, Adam D., Hoey, Andrew S., Rizzari, Justin R., Evans, Louisa, Kerrigan, Brigid, Muldoon, Geoffrey, Welch, David, and Hobbs, Jean-Paul A. (2016) Key aspects of the biology, fisheries and management of Coral grouper. Reviews in Fish Biology and Fisheries, 26 (3). pp. 303-325.

Frisch, Ashley J., Ireland, Matthew, and Baker, Ronald (2014) Trophic ecology of large predatory reef fishes: energy pathways, trophic level, and implications for fisheries in a changing climate. Marine Biology, 161 (1). pp. 61-73.

Fabinyi, Michael, Knudsen, Magne, and Segi, Shio (2010) Social complexity, ethnography and coastal resource management in the Philippines. Coastal Management, 38 (6). pp. 617-632.

Fabinyi, Michael (2010) The intensification of fishing and the rise of tourism: competing coastal livelihoods in the Calamianes Islands, Philippines. Human Ecology, 38 (3). pp. 415-427.

Feldheim, Kevin A., Chapman, Demian D., Simpfendorfer, Colin A., Richards, Vincent P., Shivji, Mahmood S., Wiley, Tonya R., Poulakis, Gregg R., Carlson, John K., Eng, Rowena, and Sagarese, Skyler (2010) Genetic tools to support the conservation of the endangered smalltooth sawfish, Pristis pectinata. Conservation Genetics Resources, 2 (1). pp. 105-113.

Frisch, Ashley J., and Hobbs, Jean-Paul A. (2009) Rapid assessment of anemone and anemonefish populations at the Keppel Islands [electronic resource]: a report to the Great Barrier Reef Marine Park Authority. Report. Great Barrier Reef Marine Park Authority, Australia.

G

George, Lachlan W., Martins, Ana P.B., Heupel, Michelle R., and Simpfendorfer, Colin A. (2019) Fine-scale movements of juvenile blacktip reef sharks Carcharhinus melanopterus in a shallow nearshore nursery. Marine Ecology Progress Series, 623. pp. 85-97.

Gerrard, Siri, and Kleiber, Danika (2019) Women fishers in Norway: few, but significant. Maritime Studies, 18. pp. 259-274.

Grant, Michael I., Smart, Jonathan J., White, William T., Chin, Andrew, Baje, Leontine, and Simpfendorfer, Colin A. (2018) Life history characteristics of the silky shark Carcharhinus falciformis from the central west Pacific. Marine and Freshwater Research, 69 (4). pp. 562-573.

Grüss, Arnaud, and Robinson, Jan (2015) Fish populations forming transient spawning aggregations: should spawners always be the targets of spatial protection efforts? ICES Journal of Marine Science, 72 (2). pp. 480-497.

Geraghty, Pascal T., Macbeth, William G., Harry, Alastair V., Bell, Jacqueline E., Yerman, Michelle N., and Williamson, Jane E. (2014) Age and growth parameters for three heavily exploited shark species off temperate eastern Australia. ICES Journal of Marine Science, 71 (3). pp. 559-573.

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Hopf, Jessica Kay (2016) The short- & long-term implications of marine reserves for fisheries on coral reefs. PhD thesis, James Cook University.

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Harry, Alastair V., Tobin, Andrew J., and Simpfendorfer, Colin A. (2013) Age, growth and reproductive biology of the spot-tail shark, Carcharhinus sorrah, and the Australian blacktip shark,C. tilstoni, from the Great Barrier Reef World Heritage Area, north-eastern Australia. Marine and Freshwater Research, 64 (4). pp. 277-293.

Hartley, Fraser Andrew (2013) Fear of fishers: anti-predator behaviour of coral reef fish and its relevance to fisheries management and conservation. PhD thesis, James Cook University.

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Heupel, Michelle R., Simpfendorfer, Colin A., Olsen, Esben M., and Moland, Even (2012) Consistent movement traits indicative of innate behavior in neonate sharks. Journal of Experimental Marine Biology and Ecology, 432-433. pp. 131-137.

Helyar, Sarah J., Limborg, Morten T., Bekkevold, Dorte, Babbucci, Massimiliano, van Houdt, Jeroen, Maes, Gregory E., Bargelloni, Luca, Nielsen, Rasmus O., Taylor, Martin I., Ogden, Rob, Cariani, Alessia, Carvalho, Gary R., Consortium, FishPopTrace, and Panitz, Frank (2012) SNP discovery using next generation transcriptomic sequencing in Atlantic herring (Clupea harengus). PLoS ONE, 7 (8). e42089. pp. 1-11.

Harry, A.V., Morgan, J.A.T., Ovenden, J.R., Tobin, A.J., Welch, D.J., and Simpfendorfer, C.A. (2012) Comparison of the reproductive ecology of two sympatric blacktip sharks (Carcharhinus limbatus and Carcharhinus tilstoni) off north-eastern Australia with species identification inferred from vertebral counts. Journal of Fish Biology, 81 (4). pp. 1-9.

Harrison, Hugo B. (2012) Genetic parentage analysis as a tool for measuring larval connectivity in a network of marine reserves. PhD thesis, James Cook University.

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Harry, Alastair V., Tobin, Andrew J., Simpfendorfer, Colin A., Welch, David J., Mapleston, Amos, White, Jimmy, Williams, Ashley J., and Stapley, Jason (2011) Evaluating catch and mitigating risk in a multispecies, tropical, inshore shark fishery within the Great Barrier Reef World Heritage Area. Marine and Freshwater Research, 62 (6). pp. 710-721.

Heupel, Michelle R., and Simpfendorfer, Colin A. (2011) Shark biology, ecology and management: introduction. Marine and Freshwater Research, 62 (6). p. 517.

Harry, A.V., MacBeth, W.G., Gutteridge, A.N., and Simpfendorfer, C.A. (2011) The life histories of endangered hammerhead sharks (Carcharhiniformes, Sphyrnidae) from the east coast of Australia. Journal of Fish Biology, 78 (7). pp. 2026-2051.

Heupel, Michelle R., Knip, Danielle M., de Lestang, Paul, Allsop, Quentin A., and Grace, Blair S. (2011) Short-term movement of barramundi in a seasonally closed freshwater habitat. Aquatic Biology, 12 (2). pp. 147-155.

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Hutson, K.S., Brock, E.L., and Steer, M.A. (2011) Spatial variation in parasite abundance: evidence of geographical population structuring in southern garfish Hyporhamphus melanochir. Journal of Fish Biology, 78 (1). pp. 166-182.

Harry, Alastair Varley (2011) Life histories of commercially important tropical sharks from the Great Barrier Reef World Heritage Area. PhD thesis, James Cook University.

Harry, Alastair V., Simpfendorfer, Colin A., and Tobin, Andrew J. (2010) Improving age, growth, and maturity estimates for aseasonally reproducing chondrichthyans. Fisheries Research, 106 (3). pp. 393-403.

Heupel, M.R., and Simpfendorfer, C.A. (2010) Science or slaughter: need for lethal sampling of sharks. Conservation Biology, 24 (5). pp. 1212-1218.

Heupel, Michelle R., Simpfendorfer, Colin A., and Fitzpatrick, Richard (2010) Large–scale movement and reef fidelity of grey reef sharks. PLoS ONE, 5 (3). e9650. pp. 1-5.

Heupel, Michelle R., Williams, Ashley J., Welch, David J., Davies, Campbell R., Penny, Ann, Kritzer, Jacob P., Marriott, Ross J., and Mapstone, Bruce D. (2010) Demographic characteristics of exploited tropical lutjanids: a comparative analysis. Fishery Bulletin, 108 (4). pp. 420-432.

Heupel, Michelle R., Williams, Ashley, Welch, David J., Davies, Campbell R., Adams, Samantha, Carlos, Gary, and Mapstone, Bruce D. (2010) Demography of a large exploited grouper, Plectropomus laevis: implications for fisheries management. Marine and Freshwater Research, 61 (2). pp. 184-195.

Heupel, Michelle R., Yeiser, Beau G., Collins, Angela B., Ortega, Lori, and Simpfendorfer, Colin A. (2010) Long-term presence and movement patterns of juvenile bull sharks, Carcharhinus leucas, in an estuarine river system. Marine and Freshwater Research, 61 (1). pp. 1-10.

Horne, John B., McIlwain, Jennifer L., and Van Herwerden, Lynne (2009) Isolation of 15 new polymorphic microsatellite markers from the blue-spine unicornfish Naso unicornis. Conservation Genetics Resources, 2. pp. 1-4.

Hamilton, R.J., Adams, S., and Choat, J.H. (2008) Sexual development and reproductive demography of the green humphead parrotfish (Bolbometopon muricatum) in the Solomon Islands. Coral Reefs, 27 (1). pp. 153-163.

Hobbs, J.P., Choat, J.H., Robbins, W.D., Van Herwerden, Lynne, Feary, D.A., and Ayling, Anthony (2008) Unique fish assemblages at world's southernmost oceanic coral reefs, Elizabeth and Middleton Reefs, Tasman Sea, Australia. Coral Reefs, 27 (1). p. 15.

Heupel, Michelle (2007) Exiting Terra Ceia Bay: examination of cues stimulating migration from a summer nursery area. In: McCandless, Camilla T., Kohler, Nancy E., and Pratt Jr., Harold L., (eds.) Shark Nursery Grounds of the Gulf of Mexico and the East Coast Waters of the United States. American Fisheries Society, Bethesda MD, pp. 265-280.

Hutson, Kate S., Ernst, Ingo, Mooney, Allan J., and Whittington, Ian D. (2007) Metazoan parasite assemblages of wild Seriola lalandi (Carangidae) from eastern and southern Australia. Parasitology International, 56 (2). pp. 95-105.

Hutson, Kate S., and Whittington, Ian D. (2006) Paradeontacylix godfreyi n. sp. (Digenea: Sanguinicolidae) from the heart of wild Seriola lalandi (Perciformes: Carangidae)in southern Australia. Zootaxa, 1151. pp. 55-68.

Heupel, Michelle R., Simpfendorfer, Colin A., Collins, Angela B., and Tyminski, John P. (2006) Residency and movement patterns of bonnethead sharks, Sphyrna tiburo, in a large Florida estuary. Environmental Biology of Fishes, 76. pp. 47-67.

Heupel, M. R., and Simpfendorfer, C. A. (2005) Quantitative analysis of aggregation behaviour in juvenile blacktip sharks. Marine Biology, 147 (5). pp. 1239-1249.

Heupel, Michelle R., Simpfendorfer, Colin A., and Hueter, Robert E. (2004) Estimation of shark home ranges using passive monitoring techniques. Environmental Biology of Fishes, 71 (2). pp. 135-142.

Hueter, R.E., Heupel, M.R., Heist, E.J., and Keeney, D.B. (2004) The implications of philopatry in sharks for the management of shark fisheries. Journal of Northwest Atlantic Fishery Science , 35. pp. 239-247.

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Kinney, Michael J., Hussey, Nigel E., Fisk, Aaron T., Tobin, Andrew J., and Simpfendorfer, Colin A. (2011) Communal or competitive? Stable isotope analysis provides evidence of resource partitioning within a communal shark nursery. Marine Ecology Progress Series, 439. pp. 263-276.

Knip, Danielle M., Heupel, Michelle R., Simpfendorfer, Colin A., Tobin, Andrew J., and Moloney, James (2011) Wet-season effects on the distribution of juvenile pigeye sharks, Carcharhinus amboinensis, in tropical nearshore waters. Marine and Freshwater Research, 62 (6). pp. 658-667.

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Knip, Danielle Melissa (2011) Spatial ecology of mobile predators in a nearshore tropical environment and its implication for marine protected areas. PhD thesis, James Cook University.

Kyne, Peter M., and Simpfendorfer, Colin A. (2010) Deepwater Chondrichthyans. In: Carrier, Jeffery C., Musick, John A., and Heithaus, Michael R., (eds.) Sharks and their Relatives II: Biodiversity, Adaptive Physiology, and Conservation. CRC Marine Biology Series . CRC Press, Taylor and Francis Group, Boca Raton, Florida, USA, pp. 37-113.

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Lédée, Elodie J.I., Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2015) Movements and space use of giant trevally in coral reef habitats and the importance of environmental drivers. Animal Biotelemetry, 3. 6. pp. 1-14.

Lédée, Elodie Jacqueline Isabelle (2015) Improving understanding of spatial ecology through network analysis of acoustic monitoring data. PhD thesis, James Cook University.

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Martins, Ana Paula Barbosa, Feitosa, Leonardo Manir, Lessa, Rosangela Paula, Almeida, Zafira Silva, Heupel, Michelle, Silva, Wagner Macedo, Tchaicka, Ligia, and Silva Nunes, Jorge Luiz (2018) Analysis of the supply chain and conservation status of sharks (Elasmobranchii: Superorder Selachimorpha) based on fisher knowledge. PLoS One, 13 (3).

McAllister, Jaime D., Barnett, Adam, Lyle, Jeremy M., Stehfest, Kilian M., and Semmens, Jayson M. (2018) Examining trends in abundance of an overexploited elasmobranch species in a nursery area closure. Marine and Freshwater Research, 69 (3). pp. 376-384.

Matley, Jordan K., Maes, Gregory E., Devloo-Delva, Floriaan, Huerlimann, Roger, Chua, Gladys, Tobin, Andrew J., Fisk, Aaron T., Simpfendorfer, Colin A., and Heupel, Michelle R. (2018) Integrating complementary methods to improve diet analysis in fishery‐targeted species. Ecology and Evolution, 8 (18). pp. 9503-9515.

Maroso, F., Hillen, J.E.J., Pardo, B.G., Gkagkavouzis, K., Coscia, I., Hermida, M., Franch, R., Hellemans, B., Van Houdt, J., Simionati, B., Taggart, J.B., Nielsen, E.E., Maes, G.E., Ciavaglia, S.A., Webster, L.M., Volckaert, F.A.M., Martínez, P., Bargelloni, Luca, Ogden, R., and AquaTrace Consortium (2018) Performance and precision of double digestion RAD (ddRAD) genotyping in large multiplexed datasets of marine fish species. Marine Genomics, 39. pp. 64-72.

Matley, J.K., Heupel, M.R., Fisk, A.T., Simpfendorfer, C.A., and Tobin, A.J. (2017) Measuring niche overlap between co-occurring Plectropomus spp. using acoustic telemetry and stable isotopes. Marine and Freshwater Research, 68 (8). pp. 1468-1478.

Moore, Bradley R., Stapley, Jason M., Williams, Ashley J., and Welch, David. J. (2017) Overexploitation causes profound demographic changes to the protandrous hermaphrodite king threadfin (Polydactylus macrochir) in Queensland's Gulf of Carpentaria, Australia. Fisheries Research, 187. pp. 199-208.

Matley, J.K., Tobin, A.J., Simpfendorfer, C.A., Fisk, A.T., and Heupel, M.R. (2017) Trophic niche and spatio-temporal changes in the feeding ecology of two sympatric species of coral trout (Plectropomus leopardus and P-laevis). Marine Ecology-Progress Series, 563. pp. 197-210.

Munroe, S.E.M., Simpfendorfer, C.A., and Heupel, M.R. (2016) Variation in blacktip shark movement patterns in a tropical coastal bay. Environmental Biology of Fishes, 99 (4). pp. 377-389.

Munroe, Samantha E.M., Heupel, Michelle R., Fisk, Aaron T., and Simpfendorfer, Colin A. (2015) Geographic and temporal variation in the trophic ecology of a small-bodied shark: evidence of resilience to environmental change. Canadian Journal of Fisheries and Aquatic Sciences, 72 (3). pp. 343-351.

Matley, J.K., Heupel, M.R., and Simpfendorfer, C.A. (2015) Depth and space use of leopard coralgrouper Plectropomus leopardus using passive acoustic tracking. Marine Ecology Progress Series, 521. pp. 201-216.

Munroe, Samantha E.M., Simpfendorfer, Colin A., Moloney, James, and Heupel, Michelle R. (2015) Nearshore movement ecology of a medium-bodied shark, the creek whaler Carcharhinus fitzroyensis. Animal Biotelemetry, 3 (10). pp. 1-12.

Munroe, S.E.M., Heupel, M.R., Fisk, A.T., Logan, M., and Simpfendorfer, C.A. (2015) Regional movement patterns of a small-bodied shark revealed by stable-isotope analysis. Journal of Fish Biology, 86 (5). pp. 1567-1586.

McNamara, M.K.A., Miller, T.L., and Cribb, T.H. (2014) Evidence for extensive cryptic speciation in trematodes of butterflyfishes (Chaetodontidae) of the tropical Indo-West Pacific. International Journal for Parasitology, 44 (1). pp. 37-48.

Moore, Brad R., and Simpfendorfer, Colin A. (2014) Assessing connectivity of a tropical estuarine teleost through otolith elemental profiles. Marine Ecology Progress Series, 501. pp. 225-238.

Munroe, S.E.M., Simpfendorfer, Colin, and Heupel, M.R. (2014) Defining shark ecological specialisation: concepts, context, and examples. Reviews in Fish Biology and Fisheries, 24 (1). pp. 317-331.

McLean, Montana F., Simpfendorfer, Colin A., Heupel, Michelle R., Dadswell, Michael J., and Stokesbury, Michael J.W. (2014) Diversity of behavioural patterns displayed by a summer feeding aggregation of Atlantic sturgeon in the intertidal region of Minas Basin, Bay of Fundy, Canada. Marine Ecology Progress Series, 496. pp. 59-69.

Munroe, S.E.M., Simpfendorfer, C.A., and Heupel, M.R. (2014) Habitat and space use of an abundant nearshore shark, Rhizoprionodon taylori. Marine and Freshwater Research, 65 (11). pp. 959-968.

Miller, Terrence L., and Cribb, Thomas H. (2013) Dramatic phenotypic plasticity within species of Siphomutabilus n. g. (Digenea: Cryptogonimidae) from Indo-Pacific caesionines (Perciformes: Lutjanidae). Systematic Parasitology, 86 (2). pp. 101-112.

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Morgan, Jess A.T., Macbeth, Michael, Broderick, Damien, Whatmore, Paul, Street, Raewyn, Welch, David J., and Ovenden, Jennifer R. (2013) Hybridisation, paternal leakage and mitochondrial DNA linearization in three anomalous fish (Scombridae). Mitochondrion, 13 (6). pp. 852-861.

Moore, Bradley R., Simpfendorfer, Colin A., Newman, Stephen J., Stapley, Jason M., Allsop, Quentin, Sellin, Michelle J., and Welch, David J. (2012) Spatial variation in life history reveals insight into connectivity and geographic population structure of a tropical estuarine teleost: king threadfin, Polydactylus macrochir. Fisheries Research, 125-126. pp. 214-224.

Morgan, Jess A.T., Harry, Alastair V., Welch, David J., Street, Raewyn, White, Jimmy, Geraghty, Pascal T., Macbeth, William G., Tobin, Andrew, Simpfendorfer, Colin A., and Ovenden, Jennifer R. (2012) Detection of interspecies hybridisation in Chondrichthyes: hybrids and hybrid offspring between Australian (Carcharhinus tilstoni) and common (C. limbatus) blacktip shark found in an Australian fishery. Conservation Genetics, 13 (2). pp. 455-463.

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Tobin, R.C., Sutton, S.G., Penny, A., Williams, L., Maroske, J., and Nilsson, J. (2010) Baseline Socio-Economic Data for Queensland East Coast Inshore and Rocky Reef Fishery Stakeholders. Part A: Commercial Fishers. Report. Fishing and Fisheries Research Centre, Townsville, QLD. Australia.

Tobin, R.C., Beggs, K., Sutton, S.G., and Penny, A. (2010) Baseline Socio-Economic Data for Queensland East Coast Inshore and Rocky Reef Fishery Stakeholders. Part D: Seafood Consumers. Report. Fishing and Fisheries Research Centre, Townsville, QLD, Australia.

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Whitty, Jeff M., Phillips, Nicole M., Thorburn, Dean C., Simpfendorfer, Colin A., Field, Iain, Peverell, Stirling C., and Morgan, David L. (2014) Utility of rostra in the identification of Australian sawfishes (Chondrichthyes: Pristidae). Aquatic Conservation: marine and freshwater ecosystems , 24 (6). pp. 791-804.

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Wiley, Tonya R., and Simpfendorfer, Colin A. (2010) Using public encounter data to direct recovery efforts for the endangered smalltooth sawfish Pristis pectinata. Endangered Species Research, 12 (3). pp. 179-191.

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Williams, Ashley J., Ballagh, Aaron C., Begg, Gavin A., Murchie, Cameron D., and Currey, Leanne M. (2008) Harvest patterns and effort dynamics of indigenous and non-indigenous commercial sectors of the eastern Torres Strait reef line fishery. Continental Shelf Research, 28 (16). pp. 2117-2128.

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Yates, Peter M., Heupel, Michelle R., Tobin, Andrew J., and Simpfendorfer, Colin A. (2012) Diversity in young shark habitats provides the potential for portfolio effects. Marine Ecology Progress Series, 458. pp. 269-281.

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