A

Arbon, Phoebe M., Silva, Catarina N.S., Jones, David B., Jaccoud, Damian, Gervis, Mark, Jerry, Dean R., and Strugnell, Jan M. (2021) Development and validation of a SNP-based genotyping tool for pedigree establishment in Australian greenlip abalone Haliotis laevigata Donovan, 1808. Aquaculture Reports, 20. 100746.

Arroyo, Francine, Pawlowska, Teresa E., Choat, J. Howard, Clements, Kendall D., and Angert, Esther R. (2019) Recombination contributes to population diversification in the polyploid intestinal symbiont Epulopiscium sp. type B. ISME Journal, 13 (4). pp. 1084-1097.

Al-Breiki, Rufaida Dhuhai, Kjeldsen, Shannon R., Afzal, Hasifa, Al Hinai, Manal Saif, Zenger, Kyall R., Jerry, Dean R., Al-Abri, Mohammed Ali, and Delghandi, Madjid (2018) Genome-wide SNP analyses reveal high gene flow and signatures of local adaptation among the scalloped spiny lobster (Panulirus homarus) along the Omani coastline. BMC Genomics, 19. 690.

Almany, Glenn R., Planes, Serge, Thorrold, Simon R., Berumen, Michael L., Bode, Michael, Saenz-Agudelo, Pablo, Bonin, Mary C., Frisch, Ashley J., Harrison, Hugo B., Messmer, Vanessa, Nanninga, Gerrit B., Priest, Mark A., Srinivasan, Maya, Sinclair-Taylor, Tane, Williamson, David H., and Jones, Geoffrey P. (2017) Larval fish dispersal in a coral-reef seascape. Nature Ecology & Evolution, 1 (6). pp. 1-4.

B

Brink-Hull, M., Cyrus, M.D., Macey, B.M., Rhode, C., Hull, K.L., and Roodt-Wilding, R. (2022) Dietary effects on the reproductive performance of the sea urchin Tripneustes gratilla ll: Implications for offspring performance. Aquaculture, 553. 738034.

Byrne, Margaret, Krauss, Siegfried L., Millar, Melissa A., Elliot, Carole P., Coates, David J., Yates, Colin, Binks, Rachel M., Neville, Paul, Nistelberger, Heidi, Wardell-Johnson, Grant, Robinson, Todd, Butcher, Ryonen, Barrett, Matthew, and Gibson, Niel (2019) Persistence and stochasticity are key determinants of genetic diversity in plants associated with banded iron formation inselbergs. Biological Reviews, 94 (3). pp. 753-772.

Basiita, Rose K., Zenger, Kyall R., Mwanja, Matthew T., and Jerry, Dean R. (2018) Gene flow and genetic structure in Nile perch, Lates niloticus, from African freshwater rivers and lakes. PLoS ONE, 13 (7). e0200001.

Barton, Diane P., Taillebois, Laura, Taylor, Jonathan, Crook, David A., Saunders, Thor, Hearnden, Mark, Greig, Alan, Welch, David J., Newman, Stephen J., Travers, Michael J., Saunders, Richard J., Errity, Chris, Maher, Safia, Dudgeon, Christine, and Ovenden, Jennifer (2018) Stock structure of Lethrinus laticaudis (Lethrinidae) across northern Australia determined using genetics, otolith microchemistry and parasite assemblage composition. Marine and Freshwater Research, 69 (4). pp. 487-501.

Bernatchez, Louis, Wellenreuther, Maren, Araneda, Cristián, Ashton, David T., Barth, Julia M.I., Beacham, Terry D., Maes, Gregory E., Martinsohn, Jann T., Miller, Kristina M., Naish, Kerry A., Ovenden, Jennifer R., Primmer, Craig R., Suk, Ho Young, Therkildsen, Nina O., and Withler, Ruth E. (2017) Harnessing the power of genomics to secure the future of seafood. Trends in Ecology and Evolution, 32 (9). pp. 665-680.

Bonin, Mary C., Harrison, Hugo B., Williamson, David H., Frisch, Ashley J., Saenz-Agudelo, Pablo, Berumen, Michael L., and Jones, Geoffrey P. (2016) The role of marine reserves in the replenishment of a locally impacted population of anemonefish on the Great Barrier Reef. Molecular Ecology, 25 (2). pp. 487-499.

Bhattacharya, Debashish, Agrawal, Shobhit, Aranda, Manuel, Baumgarten, Sebastian, Belcaid, Mahdi, Drake, Jeana L., Erwin, Douglas, Foret, Sylvain, Gates, Ruth D., Gruber, David F., Kamel, Bishoy, Lesser, Michael P., Levy, Oren, Liew, Yi Jin, MacManes, Matthew, Mass, Tali, Medina, Monica, Mehr, Shaadi, Meyer, Eli, Price, Dana C., Putnam, Hollie M., Qiu, Huan, Shinzato, Chuya, Shoguchi, Eiichi, Stokes, Alexander J., Tambutté, Sylvie, Tchernov, Dan, Voolstra, Christian R., Wagner, Nicole, Walker, Charles W., Weber, Andreas P.M., Weis, Virginia, Zelzion, Ehud, Zoccola, Didier, and Falkowski, Paul G. (2016) Comparative genomics explains the evolutionary success of reef-forming corals. eLife, 5. e13288. pp. 1-26.

C

Cooper, Madalyn K., Villacorta-Rath, Cecilia, Burrows, Damien, Jerry, Dean R., Carr, Leah, Barnett, Adam, Huveneers, Charlie, and Simpfendorfer, Colin A. (2022) Practical eDNA sampling methods inferred from particle size distribution and comparison of capture techniques for a Critically Endangered elasmobranch. Environmental DNA, 4 (5). pp. 1011-1023.

Cooper, Madalyn K. (2022) Resolving the global distribution of sawfishes (family Pristidae) using environmental DNA. PhD thesis, James Cook University.

Cockburn, Andrew, Peñalba, Joshua V., Jaccoud, Damian, Kilian, Andrzej, Brouwer, Lyanne, Double, Michael C., Margraf, Nicolas, Osmond, Helen L., Kruuk, Loeske E.B., and van de Pol, Martijn (2021) Hiphop: improved paternity assignment among close relatives using a simple exclusion method for biallelic markers. Molecular Ecology Resources, 21 (6). pp. 1850-1865.

Choi, Young-Jun, Fontenla, Santiago, Fischer, Peter U., Le, Thanh Hoa, Costabile, Alicia, Blair, David, Brindley, Paul J., Tort, Jose F., Cabada, Miguel M., and Mitreva, Makedonka (2020) Adaptive radiation of the flukes of the family Fasciolidae inferred from genome-wide comparisons of key species. Molecular Biology and Evolution, 37 (1). pp. 84-99.

Cooke, Ira, Ying, Hua, Forêt, Sylvain, Bongaerts, Pim, Strugnell, Jan M., Simakov, Oleg, Zhang, Jia, Field, Matt A., Rodriguez-Lanetty, Mauricio, Bell, Sara C., Bourne, David G., van Oppen, Madeleine J.H., Ragan, Mark A., and Miller, David J. (2020) Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts. Science Advances, 6 (48). eabc6318.

Cooper, W.E., Kudo, H., and Duke, Norman C. (2016) Bruguiera hainesii C.G.Rogers (Rhizophoraceae), an endangered species recently discovered in Australia. Austrobaileya, 9 (4). pp. 481-488.

D

Doll, Peter C., Messmer, Vanessa, Uthicke, Sven, Doyle, Jason R., Caballes, Ciemon F., and Pratchett, Morgan S. (2021) DNA-based detection and patterns of larval settlement of the corallivorous crown-of-thorns sea star (Acanthaster sp.). Biological Bulletin, 241 (3). pp. 271-285.

Devloo-Delva, Floriaan, Maes, Gregory E., Hernández, Sebastián I., Mcallister, Jaime D., Gunasekera, Rasanthi M., Grewe, Peter M., Thomson, Robin B., and Feutry, Pierre (2019) Accounting for kin sampling reveals genetic connectivity in Tasmanian and New Zealand school sharks, Galeorhinus galeus. Ecology and Evolution, 9 (8). pp. 4465-4472.

Dibattista, Joseph D., Wakefield, Corey B., Moore, Glenn I., Bunce, Michael, Williams, Ashley J., O'Malley, Joseph M., Humphreys, Robert L., Halafihi, Tuikolongahau, Williams, Alan, Green, Mark A., Graham, Ken, Tucker, Sarah J., Cruz, Eric, and Newman, Stephen J. (2018) Genomic and life-history discontinuity reveals a precinctive lineage for a deep-water grouper with gene flow from tropical to temperate waters on the west coast of Australia. Ecological Genetics and Genomics, 9. pp. 23-33.

do Prado, Fernanda Dotti, Vera, Manuel, Hermida, Miguel, Bouza, Carmen, Pardo, Belén G., Vilas, Román, Blanco, Andrés, Fernández, Carlos, Maroso, Francesco, Maes, Gregory E., Turan, Cemal, Volckaert, Filip A.M., Taggart, John B., Carr, Adrian, Ogden, Rob, Nielsen, Einar Eg, Aquatrace, Consortium, and Martínez, Paulino (2018) Parallel evolution and adaptation to environmental factors in a marine flatfish: implications for fisheries and aquaculture management of the turbot (Scophthalmus maximus). Evolutionary Applications, 11 (8). pp. 1322-1341.

Diopere, Eveline, Vandamme, Sara G., Hablutzel, Pascal I., Cariani, Alessia, Van Houdt, Jeroen, Rijnsdorp, Adriaan, Tinti, Fausto, FishPopTrace Consortium, , Volckaert, Filip A.M., and Maes, Gregory E. (2018) Seascape genetics of a flatfish reveals local selection under high levels of gene flow. ICES Journal of Marine Science, 75 (2). pp. 675-689.

Delghandi, Madjid, Afzal, Hasifa, Al Hinai, Manal Saif Nasser, Al-Breiki, Rafaida Dhuhai Gharib, Jerry, Dean R., and Dao, Hoc Tan (2016) Novel polymorphic microsatellite markers for Panulirus ornatus and their cross-species primer amplification in Panulirus homarus. Animal Biotechnology, 27 (4). pp. 310-314.

E

Eldridge, Mark D.B., Miller, Emily J., Neaves, Linda E., Zenger, Kyall R., and Herbert, Catherine (2017) Extensive genetic differentiation detected within a model marsupial, the tammar wallaby (Notamacropus eugenii). PLoS ONE, 12 (3). e0172777. pp. 1-23.

F

Fuller, Zachary L., Mocellin, Veronique J. L., Morris, Luke A., Cantin, Neal, Shepherd, Jihanne, Sarre, Luke, Peng, Julie, Liao, Yi, Pickrell, Joseph, Andolfatto, Peter, Matz, Mikhail, Bay, Line K., and Przeworski, Molly (2020) Population genetics of the coral Acropora millepora: toward genomic prediction of bleaching. Science, 369 (6501). eaba4674.

G

Guo, Zixiao, Li, Xinnian, He, Ziwen, Yang, Yuchen, Wang, Wenqing, Zhong, Cairong, Greenberg, Anthony J., Wu, Chung-I, Duke, Norman C., and Shi, Suhua (2018) Extremely low genetic diversity across mangrove taxa reflects past sea level changes and hints at poor future responses. Global Change Biology, 24 (4). pp. 1741-1748.

Guo, Zixiao, Huang, Yelin, Chen, Yongmei, Duke, Norman C., Zhong, Cairong, and Shi, Sugua (2016) Genetic discontinuities in a dominant mangrove Rhizophora apiculata (Rhizophoraceae) in the Indo-Malesian region. Journal of Biogeography, 43. pp. 1856-1868.

H

He, Ziwen, Li, Xinnian, Yang, Ming, Wang, Xinfeng, Zhong, Cairong, Duke, Norman C., Shi, Suhua, and Wu, Chung-I (2019) Speciation with gene flow via cycles of isolation and migration: insights from multiple mangrove taxa. National Science Review, 6 (2). pp. 275-288.

He, Song, Johansen, Jacob, Hoey, Andrew S., Pappas, Melissa K., and Berumen, Michael L. (2018) Molecular confirmation of hybridization between Dascyllus reticulatus × Dascyllus aruanus from the Great Barrier Reef. Marine Biodiversity, 49. pp. 395-404.

Head, Catherine E.I., Koldewey, Heather, Pavoine, Sandrine, Pratchett, Morgan S., Rogers, Alex D., Taylor, Michelle L., and Bonsall, Michael B. (2018) Trait and phylogenetic diversity provide insights into community assembly of reef-associated shrimps (Palaemonidae) at different spatial scales across the Chagos Archipelago. Ecology and Evolution, 8 (8). pp. 4098-4107.

Harrison, Hugo B., Pratchett, Morgan S., Messmer, Vanessa, Saenz-Agudelo, Pablo, and Berumen, Michael L. (2017) Microsatellites reveal genetic homogeneity among outbreak populations of crown-of-thorns starfish (Acanthaster cf. solaris) on Australia's Great Barrier Reef. Diversity, 9 (1). 16.

Hodge, Jennifer R., and Bellwood, David R. (2016) The geography of speciation in coral reef fishes: the relative importance of biogeographical barriers in separating sister-species. Journal of Biogeography, 43 (7). pp. 1324-1335.

J

Jackson, Emma L., Smith, Timothy M., York, Paul H., Nielsen, Jesper, Irving, Andrew D., and Sherman, Craig D. H. (2021) An assessment of the seascape genetic structure and hydrodynamic connectivity for sub-tropical seagrass restoration. Restoration Ecology, 29 (1). e13269.

Jin, Young K., Kininmonth, Stuart, Lundgren, Petra B., van Oppen, Madeleine J.H., and Willis, Bette L. (2020) Predicting the spatial distribution of allele frequencies for a gene associated with tolerance to eutrophication and high temperature in the reef-building coral, Acropora millepora, on the Great Barrier Reef. Coral Reefs, 39. pp. 147-158.

Jones, Andrew T., Lavery, Shane D., Le Port, Agnes, Wang, You Gan, Blower, Dean, and Ovenden, Jennifer (2019) Sweepstakes reproductive success is absent in a New Zealand snapper (Chrysophrus auratus) population protected from fishing despite "tiny" Ne/N ratios elsewhere. Molecular Ecology, 28 (12). pp. 2986-2995.

Jones, Karina, Jensen, Michael, Burgess, Graham, Leonhardt, Johanna, van Herwerden, Lynne, Hazel, Julia, Hamann, Mark, Bell, Ian, and Ariel, Ellen (2018) Closing the gap: mixed stock analysis of three foraging populations of green turtles (Chelonia mydas) on the Great Barrier Reef. PeerJ, 6. 5651.

Jeffries, Daniel L., Copp, Gordon H., Maes, Gregory E., Lawson Handley, Lori, Sayer, Carl D., and Hänfling, Bernd (2017) Genetic evidence challenges the native status of a threatened freshwater fish (Carassius carassius ) in England. Ecology and Evolution, 7 (7). pp. 2871-2882.

Jin, Young K,, Lundgren, Petra, Lutz, Adrian, Raina, Jean-Baptiste, Howells, Emily J., Paley, Allison S., Willis, Bette L., and Van Oppen, Madeleine J.H. (2016) Genetic markers for antioxidant capacity in a reef-building coral. Science Advances, 2. e1500842. pp. 1-7.

K

Kwong, Lok Ting, Villacorta-Rath, Cecilia, Doyle, Jason, and Uthicke, Sven (2021) Quantifying shedding and degradation rates of environmental DNA (eDNA) from Pacific crown-of-thorns seastar (Acanthaster cf. solaris). Marine Biology, 168. 85.

L

Lau, Sally C. Y., Wilson, Nerida G., Silva, Catarina N. S., and Strugnell, Jan M. (2020) Detecting glacial refugia in the Southern Ocean. Ecography, 43 (11). pp. 1639-1656.

Lima, Francoise D., Strugnell, Jan M., Leite, Tatiana S., and Lima, Sergio M.Q. (2020) A biogeographic framework of octopod species diversification: the role of the Isthmus of Panama. PeerJ, 8. e8691.

Lukoschek, Vimoksalehi (2018) Congruent phylogeographic patterns in a young radiation of live‐bearing marine snakes: Pleistocene vicariance and the conservation implications of cryptic genetic diversity. Diversity and Distributions, 24 (3). pp. 325-340.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., and Zenger, Kyall R. (2018) Genome-wide comparisons reveal evidence for a species complex in the black-lip pearl oyster Pinctada margaritifera (Bivalvia: Pteriidae). Scientific Reports, 8. 191.

Lukoschek, Vimoksalehi (2018) Population declines, genetic bottlenecks and potential hybridization in sea snakes on Australia's Timor Sea reefs. Biological Conservation, 225. pp. 66-79.

Li, Xinnian, Duke, Norman C., Yang, Yuchen, Huang, Lishi, Zhu, Yuxiang, Zhang, Zhang, Zhou, Renchao, Zhong, Cairong, Huang, Yelin, and Sia, Suhua (2016) Re-evaluation of phylogenetic relationships among species of the mangrove genus Avicennia from Indo-West Pacific based on multilocus analyses. PLoS ONE, 11 (10). e0164453. pp. 1-14.

Le Port, A., Roycroft, E.J., Thakur, V., and Lavery, S.D. (2016) Characterisation of eleven new polymorphic microsatellite markers for the coastal stingray Dasyatis brevicaudata (Dasyatidae Hutton 1875), and cross-amplification in seven dasyatid species. Biochemical Systematics and Ecology, 65. pp. 234-237.

Lukoschek, Vimoksalehi, Riginos, Cynthia, and van Oppen, Madeleine J.H. (2016) Congruent patterns of connectivity can inform management for broadcast spawning corals on the Great Barrier Reef. Molecular Ecology, 25 (13). pp. 3065-3080.

Lawn, R.J., and Bielig, L.M. (2016) Expression of amphicarpy in Vigna lanceolata morphotypes and their hybrids and implications for cultivar development. Crop & Pasture Science, 67 (9). CP16087. pp. 978-987.

M

Moran, Megan N., Jones, D.B., Jensen, S.A., Marcoli, R., and Jerry, D. R. (2023) Optimising commercial traits through gene editing in aquaculture: Strategies for accelerating genetic improvement. Reviews in Aquaculture. (In Press)

Massault, Cecile, Jeffrey, Cara, Jones, David B., Barnard, Roger, Strugnell, Jan M., Zenger, Kyall R., and Jerry, Dean R. (2022) Non-invasive DNA collection for parentage analysis for bivalves: A case study from the silver-lipped pearl oyster (Pinctada maxima). Aquaculture, 552. 738036.

Morrissey, Scott J., Jerry, Dean R., and Kingsford, Michael J. (2022) Genetic Detection and a Method to Study the Ecology of Deadly Cubozoan Jellyfish. Diversity, 14 (12). 1139.

Mohamed, Amin R., Andrade, Natalia, Moya, Aurelie, Chan, Cheong Xin, Negri, Andrew P., Bourne, David G., Ying, Hua, Ball, Eldon E., and Miller, David J. (2020) Dual RNA-sequencing analyses of a coral and its native symbiont during the establishment of symbiosis. Molecular Ecology, 29 (20). pp. 3921-3937.

Ma, Ka Yan, van Herwerden, Lynne, Newman, Stephen J., Berumen, Michael L., Choat, John Howard, Chu, Ka Hou, and de Mitcheson, Yvonne Sadovy (2018) Contrasting population genetic structure in three aggregating groupers (Percoidei: Epinephelidae) in the Indo-West Pacific: the importance of reproductive mode. BMC Evolutionary Biology, 18. 180.

Morse, Peter, Kjeldsen, Shannon R., Meekan, Mark G., McCormick, Mark I., Finn, Julian, Huffard, Christine L., and Zenger, Kyall R. (2018) Genome-wide comparisons reveal a clinal species pattern within a holobenthic octopod - the Australian Southern blue-ringed octopus, Hapalochlaena maculosa (Cephalopoda: Octopodidae). Ecology and Evolution, 8 (4). pp. 2253-2267.

Moyano, Marta, Illing, Björn, Christiansen, Lars, and Peck, Myron A. (2018) Linking rates of metabolism and growth in marine fish larvae. Marine Biology, 165. 5.

Maroso, F., Hillen, J.E.J., Pardo, B.G., Gkagkavouzis, K., Coscia, I., Hermida, M., Franch, R., Hellemans, B., Van Houdt, J., Simionati, B., Taggart, J.B., Nielsen, E.E., Maes, G.E., Ciavaglia, S.A., Webster, L.M., Volckaert, F.A.M., Martínez, P., Bargelloni, Luca, Ogden, R., and AquaTrace Consortium, (2018) Performance and precision of double digestion RAD (ddRAD) genotyping in large multiplexed datasets of marine fish species. Marine Genomics, 39. pp. 64-72.

McKnight, Donald T., Schwarzkopf, Lin, Alford, Ross A., Bower, Deborah S., and Zenger, Kyall R. (2017) Effects of emerging infectious diseases on host population genetics: a review. Conservation Genetics, 18. pp. 1235-1245.

Momigliano, P., Harcourt, R., Robbins, W.D., Jaiteh, V., Mahardika, G.N., Sembiring, A., and Stow, A. (2017) Genetic structure and signatures of selection in grey reef sharks (Carcharhinus amblyrhynchos). Heredity, 119. pp. 142-153.

Ma, Jun, He, Jun-Jun, Liu, Guo-Hua, Blair, David, Liu, Li-Zhi, Liu, Yi, and Zhu, Xing-Quan (2016) Mitochondrial genome of Ogmocotyle sikae and implications for phylogenetic studies of the Notocotylidae trematodes. Infection, Genetics and Evolution, 37. pp. 208-214.

N

Namsanor, Jutamas, Pitaksakulrat, Opal, Kopolrat, Kulthilda, Kiatsopit, Nadda, Webster, Bonnie L., Gower, C.M., Webster, Joanne P., Laha, Thewarach, Saijuntha, Weerachai, Laoprom, Nongluk, Andrews, Ross H., Petney, Trevor N., Blair, David, and Sithithaworn, Paiboon (2020) Impact of geography and time on genetic clusters of Opisthorchis viverrini identified by microsatellite and mitochondrial DNA analysis. International Journal for Parasitology, 50 (14). pp. 1133-1144.

Nauheimer, Lars, Cui, Lujing, Clarke, Charles, Crayn, Darren M., Bourke, Greg, and Nargar, Katharina (2019) Genome skimming provides well resolved plastid and nuclear phylogenies, showing patterns of deep reticulate evolution in the tropical carnivorous plant genus Nepenthes (Caryophyllales). Australian Systematic Botany, 32. pp. 243-254.

Naser, Murtada D., Davie, Peter J. F., and Waltham, Nathan J. (2018) Redescription of Austrothelphusa wasselli (Bishop, 1963) (Crustacea: Brachyura: Gecarcinucidae), and designation of a new species from the Gilbert River, north Queensland, Australia. Zootaxa, 4369 (1). pp. 109-127.

Nakazawa, Takefumi, Liu, Shang Yin Vanson, Sakai, Yoichiro, Araki, Kiwako S., Tsai, Cheng-Han, and Okuda, Noboru (2018) Spatial genetic structure and body size divergence in endangered Gymnogobius isaza in ancient Lake Biwa. Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, 29 (5). pp. 756-764.

Nuske, Susan J., Anslan, Sten, Tedersoo, Leho, Bonner, Mark T.L., Congdon, Brad C., and Abell, Sandra E. (2018) The endangered northern bettong, Bettongia tropica, performs a unique and potentially irreplaceable dispersal role for truffle ectomycorrhizal fungi. Molecular Ecology, 27 (3). pp. 4960-4971.

Nelson, Joel T., Wilson, Robert E., McCracken, Kevin G., Cumming, Graeme S., Joseph, Leo, Guay, Patrick-Jean, and Peters, Jeffrey L. (2017) Divergence and gene flow in the globally distributed blue-winged ducks. Journal of Avian Biology, 48 (5). pp. 640-649.

Neuditschko, Markus, Raadsma, Herman W., Khatkar, Mehar S., Jonas, Elisabeth, Steinig, Eike J., Flury, Christine, Signer-Hasler, Heidi, Frischknecht, Mirjam, von Niederhausem, Ruedi, Leeb, Tosso, and Rieder, Stefan (2017) Identification of key contributors in complex population structures. PLoS One, 12 (5). e0177638. pp. 1-19.

Noonan, Sam H.C., Fabricius, Katharina E., and Humphrey, Craig (2013) Symbiodinium Community Composition in Scleractinian Corals Is Not Affected by Life-Long Exposure to Elevated Carbon Dioxide. PLoS ONE, 8 (5). e63985.

O

Orbán, László, Shen, Xueyan, Phua, Norman, and Varga, László (2021) Toward genome-based selection in Asian seabass: what can we learn from other food fishes and farm animals? Frontiers in Genetics, 12. 506754.

Oliva, Jessica Lee, Wong, Yen T., Rault, Jean-Loup, Appleton, Belinda, and Lill, Alan (2016) The oxytocin receptor gene, an integral piece of the evolution of Canis familaris from Canis lupus. Pet Behaviour Science, 2. pp. 1-15.

P

Popa-Báez, Ángel-David, Lee, Siu Fai, Yeap, Heng Lin, Prasad, Shirleen S., Schiffer, Michele, Mourant, Roslyn G., Castro-Vargas, Cynthia, Edwards, Owain R., Taylor, Phillip W., and Oakeshott, John G. (2020) Climate stress resistance in male Queensland fruit fly varies among populations of diverse geographic origins and changes during domestication. BMC Genetics, 21. 135.

Puncher, Gregory N., Cariani, Alessia, Maes, Gregory E., Van Houdt, Jeroen, HertenKatho, Koen, Cannas, Rita, Rodriguez-Ezpeleta, Naiara, Albaina, Aitor, Estonba, Andone, Lutcavage, Molly, Hanke, Alex, Rooker, Jay, Franks, James S., Quattro, Joseph S., Basilone, Gualtiero, Fraile, Igaratza, Laconcha, Urtzi, Goni, Nicolas, Kimoto, Ai, Macias, David, Alemany, Francisco, Deguara, Simeon, Zgozi, Salem W., Garibaldi, Fulvio, Oray, Isik K., Karakulak, Firdes Saadet, Abid, Noureddine, Santos, Miguel N., Addis, Piero, Arrizabalaga, Haritz, and Tinti, Fausto (2018) Spatial dynamics and mixing of bluefin tuna in the Atlantic Ocean and Mediterranean Sea revealed using next-generation sequencing. Molecular Ecology Resources, 18 (3). pp. 620-638.

Pazmiño, Diana A., Maes, Gregory E., Green, Madeline E., Simpfendorfer, Colin A., Hoyos-Padilla, E. Mauricio, Duffy, Clinton J.A., Meyer, Carl G., Kerwath, Sven E., Salinas-de-Leon, Pelayo, and van Herwerden, Lynne (2018) Strong trans-Pacific break and local conservation units in the Galapagos shark (Carcharhinus galapagensis) revealed by genome-wide cytonuclear markers. Heredity, 120. pp. 407-421.

Pazmiño, Diana A., Maes, Gregory E., Simpfendorfer, Colin A., Salinas-de-León, Pelayo, and van Herwerden, Lynne (2017) Genome-wide SNPs reveal low effective population size within confined management units of the highly vagile Galapagos shark (Carcharhinus galapagensis). Conservation Genetics, 18 (5). pp. 1151-1163.

Pujolar, José Martin, and Maes, Gregory E. (2016) Evolutionary genomics of North Atlantic eels: current status and perspectives. In: Arai, Takaomi, (ed.) Biology and Ecology of Anguillid Eels. CRC Press, Boca Raton, FL, USA, pp. 36-51.

Q

Quattrini, Andrea M., Faircloth, Brant C., Dueñas, Luisa F., Bridge, Tom C.L., Brugler, Mercer R., Calixto-Botía, Iván F., DeLeo, Danielle M., Forêt, Sylvain, Herrera, Santiago, Lee, Simon M.Y., Miller, David J., Prada, Carlos, Rádis-Baptista, Gandhi, Ramírez-Portilla, Catalina, Sánchez, Juan A., Rodríguez, Estefanía, and McFadden, Catherine S. (2018) Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: new approaches to long-standing problems. Molecular Ecology Resources, 18 (2). pp. 281-295.

R

Rymer, Tasmin L. (2020) The role of olfactory genes in the expression of rodent paternal care behavior. Genes, 11 (3). 292.

Ramirez Flores, Omar, Birtles, Alastair, Pazmino, Diana, Zenger, Kyall R., and Van Herwerden, Lynne (2019) Dwarf minke whales from the South Pacific share a matrilineal lineage distinct from Balaenoptera acutorostrata acutorostrata and B. a. scammoni. Australian Mammalogy, 41 (2). pp. 231-240.

Rueger, Theresa, Harrison, Hugo B., Gardiner, Naomi M., Berumen, Michael L., and Jones, Geoffrey P. (2019) Extra‐pair mating in a socially monogamous and paternal mouth‐brooding cardinalfish. Molecular Ecology, 28 (10). pp. 2625-2635.

Rodríguez-Moreno, Melina, Zapata, Fernando A., Ramírez-Calero, Sandra, van Herwerden, Lynne, and Feldheim, Kevin (2019) Highly polymorphic microsatellite loci for the Acapulco damselfish, Stegastes acapulcoensis, and cross amplification in three congeneric species. Marine Biodiversity, 49 (1). pp. 481-486.

Roycroft, Emily J., Le Port, Agnes, and Lavery, Shane D. (2019) Population structure and male-biased dispersal in the short-tail stingray Bathytoshia brevicaudata (Myliobatoidei: Dasyatidae). Conservation Genetics, 20 (4). pp. 717-728.

Ron, Santiago R., Duellman, William E., Caminer, Marcel A., and Pazmino, Diana (2018) Advertisement calls and DNA sequences reveal a new species of Scinax (Anura: Hylidae) on the Pacific lowlands of Ecuador. PLoS ONE, 13 (9). e0203169.

Reid, Amanda L., and Strugnell, Jan M. (2018) A new pygmy squid, Idiosepius hallami n. sp (Cephalopoda: Idiosepiidae) from eastern Australia and elevation of the southern endemic 'notoides' clade to a new genus, Xipholeptos n. gen. Zootaxa, 4369 (4). pp. 451-486.

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