Article

Marc, Adrien F., Guppy, Jarrod L., Goldsbury, Julie, Rudd, Donna, Cate, Holly S., Paris, Damien B.B.P., and Jerry, Dean R. (2024) Characterization of sperm quality in captive-bred barramundi (Lates calcarifer): Effect on spawning performance and paternal contribution in mass-spawning events. Aquaculture, 585. 740717.

Qiu, Jianqiang, Chen, Bing, Huang, Wen, Zhao, Hongxia, Hu, Junru, Loh, Jiun-Yan, and Peng, Kai (2024) Dietary condensed tannin exhibits stronger growth-inhibiting effect on Chinese sea bass than hydrolysable tannin. Animal Feed Science and Technology, 308. 115880.

Shen, Xueyan, Hu, Jie, Yáñez, José M., Bastos Gomes, Giana, Poon, Zhi Weng Josiah, Foster, Derick, Alarcon, Jorge F., Shao, Libin, Guo, Xinyu, Shao, Yunchang, Huerlimann, Roger, Li, Chengze, Goulden, Evan, Anderson, Kelli, Fan, Guangyi, and Domingos, Jose A. (2024) Exploring the cobia (Rachycentron canadum) genome: unveiling putative male heterogametic regions and identification of sex-specific markers. GigaScience, 13. giae034.

Santillan, Ezequiel, Yasumaru, Fanny, Vethathirri, Ramanujam Srinivasan, Thi, Sara Swa, Hoon, Hui Yi, Chan, Diana Pek Sian, and Wuertz, Stefan (2024) Microbial community-based protein from soybean-processing wastewater as a sustainable alternative fish feed ingredient. Scientific Reports, 14. 2620.

Wong, Kuan Yee, Megat Mazhar Khair, Megat Hamzah, Song, Adelene Ai Lian, Masarudin, Mas Jaffri, Loh, Jiun Yan, Chong, Chou Min, Beardall, John, Teo, Michelle Yee Mun, and In, Lionel Lian Aun (2024) Recombinant lactococcal-based oral vaccine for protection against Streptococcus agalactiae infections in tilapia (Oreochromis niloticus). Fish and Shellfish Immunology, 149. 109572.

Liu, Yun, Andin, Victor Charlie, Chor, Wei-Kang, Gunasekaran, Baskaran, Chong, Chou-min, Lee, Po-Tsang, and Loh, Jian-Yan (2024) A preliminary study on the effects of substituting fishmeal with defatted black soldier fly (Hermetia illucens) larval meal on Asian seabass (Lates calcarifer) juveniles: Growth performance, feed efficiency, nutrient composition, disease resistance, and economic returns. Journal of Fish Biology. (In Press)

Qiu, Jianqiang, Chen, Bing, Zhao, Hongxia, Huang, Wen, Cao, Junming, Wang, Guoxia, Loh, Jiun-Yan, and Peng, Kai (2024) The protective role of condensed tannins on growth inhibition and enterohepatic injury induced by histamine in Chinese seabass (Lateolabrax maculatus). Animal Feed Science and Technology, 310. 115921.

Marcoli, Roberta, Symonds, Jane E., Walker, Seumas P., Battershill, Christopher N., and Bird, Steve (2023) Characterising the Physiological Responses of Chinook Salmon (Oncorhynchus tshawytscha) Subjected to Heat and Oxygen Stress. Biology, 12. 1342.

Shen, Xueyan, Yáñez, José M., Gomes, Giana, Poon, Zhi Weng Josiah, Foster, Derick, Alarcon, Jorge, and Domingos, Jose A. (2023) Comparative gonad transcriptome analysis in cobia (Rachycentron canadum). Frontiers in Genetics, 14. 1128943.

Chew, Xian Zhe, Gibson-Kueh, Susan, Jerry, Dean R., and Shen, Xueyan (2023) Comparison of intestinal bacterial communities in asymptomatic and diseased Asian seabass (Lates calcarifer) with chronic enteritis and mixed bacterial infections. Aquaculture, 572. 739516.

Qiu, Jianqiang, Huang, Wen, Cao, Junming, Zhao, Hongxia, Chen, Bing, Jiun-Yan, Loh, and Peng, Kai (2023) Dietary hydrolyzable tannins reduce growth performance and induce histological damage of Chinese seabass (Lateolabrax maculatus). Frontiers in Marine Science, 10. 1183438.

Candebat, Caroline Lordes, Eddie, Thibault, Marc, Adrien Francois, Fernando, Fernando, and Nankervis, Leo (2023) Exploring the physiological plasticity of giant grouper (Epinephelus lanceolatus) to dietary sulfur amino acids and taurine to measure dietary requirements and essentiality. Fish Physiology and Biochemistry, 49. pp. 829-851.

Glencross, Brett, Fracalossi, Débora Machado, Hua, Katheline, Izquierdo, Marisol, Ma, Kangsen, Øverland, Margareth, Robb, David, Roubach, Rodrigo, Schrama, Johan, Small, Brian, Tacon, Albert, Valente, Luisa M.P., Viana, Maria-Teresa, Xie, Shouqi, and Yakupityage, Amararatne (2023) Harvesting the benefits of nutritional research to address global challenges in the 21st century. Journal of the World Aquaculture Society, 54 (2). pp. 343-363.

Nankervis, Leo (2023) How are some fish able to change colour or complexion depending on their mood? Townsville Bulletin, 1 July 2023. p. 61.

Udayantha, H.M.V., Lee, Sukkyoung, Liyanage, D.S., Lim, Chaehyeon, Jeong, Taehyug, Omeka, W.K.M., Yang, Kyerim, Kim, Gaeun, Lee, Jihun, Nadarajapillai, Kishanthini, Ganeshalingam, Subothini, Park, Cheong-Uk, Lee, Jiwon, Oh, Seong-Rip, Gong, Po, Jang, Yeounghwan, Hyun, Jaemin, Park, Aejen, Koh, Hyoung-Bum, Kim, Mun-Kwan, Jones, David B., Massault, Cecile, Jerry, Dean R., and Lee, Jeehee (2023) Identification of candidate variants and genes associated with temperature tolerance in olive flounders by Genome-Wide Association Study (GWAS). Aquaculture, 576. 739858.

Shen, Xueyan, Niu, Yong Chao, Uichanco, Joseph Angelo V., Phua, Norman, Bhandare, Pranjali, Thevasagayam, Natascha May, Prakki, Sai Rama Sridatta, and Orbán, László (2023) Mapping of a major QTL for increased robustness and detection of genome assembly errors in Asian seabass (Lates calcarifer). BMC Genomics, 24. 449.

Vakaloloma, Ulamila, Ho, Thi Hang, Loh, Jiun-Yan, Chong, Chou Min, Wangkahart, Eakapol, Lee, Meng-Chou, Nan, Fan-Hua, Lai, Hung-Chih, and Lee, Po-Tsang (2023) Modulation of immune genes in the mucosal-associated lymphoid tissues of cobia by Sarcodia suae extract. Veterinary Research Communications, 47. pp. 1973-1990.

Leahy, Susannah M., Jerry, Dean R., Wedding, Brett B.C., Robins, Julie, Wright, Carole L., Sadekov, Aleksey, David, Stephen B., Jones, David B., Williams, Samuel M., Grauf, Steve, Pavich, Luke, McLennan, Mark, Sellini, Michelle J., Goldsbury, Julie A., and Saunders, Richard J. (2023) Multimethod approach to advance provenance determination of fish in stocked systems. Canadian Journal of Fisheries and Aquatic Sciences, 80. pp. 1410-1424.

Marc, Adrien, Guppy, Jarrod L., Marshall, Hayley, Jerry, Dean R., Rudd, Donna, and Paris, Damien B.B.P. (2023) Optimization of a non-activating medium for short-term chilled storage of barramundi (Lates calcarifer) testicular spermatozoa. Fish Physiology and Biochemistry, 49. pp. 559-576.

Bansemer, Matthew S., Salini, Michael J., Nankervis, Leo, and Stone, David A.J. (2023) Reducing dietary wild derived fishmeal inclusion levels in production diets for large yellowtail kingfish (Seriola lalandi). Aquaculture, 572. 739487.

Chen, Jun Yu, Zeng, Chaoshu, and Cobcroft, Jennifer M. (2023) Year-Round Spawning, Filial Cannibalism, and Embryonic and Larval Development of the Coral Reef Fish Orchid Dottyback, Pseudochromis fridmani. Fishes, 8 (9). 451.

Shinn, Andrew P., Avenant-Oldewage, Annemarie, Bondad-Reantaso, Melba G., Cruz-Laufer, Armando J., García-Vásquez, Adriana, Hernández-Orts, Jesús S., Kuchta, Roman, Longshaw, Matt, Metselaar, Matthijs, Pariselle, Antoine, Pérez-Ponce de León, Gerardo, Pradhan, Pravata Kumar, Rubio-Godoy, Miguel, Sood, Neeraj, Vanhove, Maarten P.M., and Deveney, Marty R. (2023) A global review of problematic and pathogenic parasites of farmed tilapia. Reviews in Aquaculture, 15 (Suppl.1). pp. 92-153.

Chew, Xian Zhe, and Gibson-Kueh, Susan (2023) The haematology of clinically healthy, farmed juvenile Asian seabass (Lates calcarifer Bloch)-reference intervals, and indicators of subclinical disease. Journal of Fish Diseases, 46 (10). pp. 1109-1124.

Gibson-Kueh, S., Awate, S., and Schrittwieser, M (2023) The pathology of Lates calcarifer herpesviral disease—Disseminated intravascular coagulation explains mortality spikes. Journal of Fish Diseases, 46 (8). pp. 861-871.

Marcoli, R., Jones, D.B., Massault, C., Marc, A.F., Moran, M., Harrison, P.J., Cate, H.S., Lopata, A.L., and Jerry, D.R. (2023) The skin structure in multiple color variants of barramundi (Lates calcarifer): A histological, immunohistochemical and ultrastructural overview. Aquaculture, 576. 739859.

Candebat, Caroline Lourdes, Stephens, Frances, Booth, Mark A., Fernando, Fernando, Lopata, Andreas, and Pirozzi, Igor (2022) Adequate levels of dietary sulphur amino acids impart improved liver and gut health in juvenile yellowtail kingfish (Seriola lalandi). British Journal of Nutrition, 129. pp. 1289-1312.

Nankervis, Leo, Cobcroft, Jennifer M., Nguyen, Nguyen V., and Rimmer, Michael A. (2022) Advances in practical feed formulation and adoption for hybrid grouper (Epinephelus fuscoguttatus ♀ × E. lanceolatus ♂) aquaculture. Reviews in Aquaculture, 14 (1). pp. 288-307.

Poon, Zhi Weng Josiah, Shen, Xueyan, Angelo, Joseph, Terence, Celestine, Chua, Shi Wei Gavin, and Domingos, Jose A. (2022) Comparative transcriptome analysis reveals factors involved in the influence of dietary astaxanthin on body colouration of Malabar Snapper (Lutjanus malabaricus). Aquaculture, 562. 738874.

Budd, Alyssa M., Guppy, Jarrod L., Thepot, Valentin, Domingos, Jose A., and Jerry, Dean R. (2022) Delayed effect of low rearing temperature on gonadal DNA methylation in juvenile barramundi (Lates calcarifer). Aquaculture, 560. 738541.

Fernando, Fernando, Candebat, Caroline L., Strugnell, Jan M., Andreakis, Nikolaos, and Nankervis, Leo (2022) Dietary supplementation of astaxanthin modulates skin color and liver antioxidant status of giant grouper (Epinephelus lanceolatus). Aquaculture Reports, 26. 101266.

Chen, Jun Yu, Zeng, Chaoshu, and Cobcroft, Jennifer M. (2022) Digestive system ontogeny and the effects of weaning time on larval survival, growth and pigmentation development of orchid dottyback Pseudochromis fridmani. Aquaculture, 549. 737737.

Tola, Siriporn, Sommit, Noppasin, Seel-audom, Mintra, Khamtavee, Pimporn, Waiho, Khor, Boonmee, Teerapat, Yuangsoi, Bundit, and Munpholsri, Nut (2022) Effects of dietary tuna hydrolysate supplementation on feed intake, growth performance, feed utilization and health status of Asian sea bass (Lates calcarifer) fed a low fish meal soybean meal-based diet. Aquaculture Research, 53 (11). pp. 3898-3912.

Budd, Alyssa M., Robins, Julie B., Whybird, Olivia, and Jerry, Dean R. (2022) Epigenetics underpins phenotypic plasticity of protandrous sex change in fish. Ecology and Evolution, 12 (3). e8730.

Elhag, Abdelrahman Ibrahim, Rahmah, Sharifah, Rasid, Rasina Abdul, Shahin, Sharif, Noor, Gusti Afiz Gusti Ruslan, Muda, Mohd Sabri, Ibrahim, Mohd Zaidi, Ishak, Sairatul Dahlianis, Loh, Jiun-Yan, Amornsakun, Thumronk, Nhan, Hua Thai, Chen, Young-Mao, and Liew, Hon Jung (2022) Fatty acids in the inedible parts of jade perch Scortum barcoo. Aquaculture International, 30. pp. 2263-2277.

Omeka, W.K.M., Liyanage, D.S., Lee, Sukkyoung, Lim, Chaehyeon, Yang, Hyerim, Sandamalika, W.M.Gayashani, Udayantha, H.M.V., Kim, Gaeun, Ganeshalingam, Subothini, Jeong, Taehyug, Oh, Seong-Rip, Won, Seung-Hwan, Koh, Hyoung-Bum, Kim, Mun-Kwan, Jones, David B., Massault, Cecile, Jerry, Dean R., and Lee, Jehee (2022) Genome-wide association study (GWAS) of growth traits in olive flounder (Paralichthys olivaceus). Aquaculture, 555. 738257.

Liyanage, D.S., Lee, Sukkyoung, Yang, Hyerim, Lim, Chaehyeon, Omeka, W.K.M., Sandamalika, W.M. Gayashani, Udayantha, H.M.V., Kim, Gaeun, Ganeshalingam, Subothini, Jeong, Taehyug, Oh, Seong-Rip, Won, Seung-Hwan, Koh, Hyoung-Bum, Kim, Mun-Kwan, Jones, David B., Massault, Cecile, Jerry, Dean R., and Lee, Jehee (2022) Genome-wide association study of VHSV-resistance trait in Paralichthys olivaceus. Fish and Shellfish Immunology, 124. pp. 391-400.

Ong, Jun Kiat Edwin, Nair, Thiviya, Ng, Tze Hann, Domingos, Jose A., and Gomes, Giana Bastos (2022) Identification of scale drop disease virus based on environment DNA in an aquaculture facility of Singapore. Aquaculture, 563. 738993.

Guppy, Jarrod L., Marc, Adrien F., and Jerry, Dean R. (2022) Maturation and spawning performance of hormonally-induced precocious female barramundi (Lates calcarifer) and implications of their use in selective breeding. Aquaculture, 552. 737991.

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Banh, Quyen Q. T., Guppy, Jarrod L., Domingos, Jose A., Budd, Alyssa M., Pinto, Ricardo C. C., Marc, Adrien F., and Jerry, Dean R. (2021) Induction of precocious females in the protandrous barramundi (Lates calcarifer) through implants containing 17β-estradiol - effects on gonadal morphology, gene expression and DNA methylation of key sex genes. Aquaculture, 539. 736601.

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Nayfa, Maria G., Jones, David B., Lind, Curtis E., Benzie, John A.H., Jerry, Dean R., and Zenger, Kyall R. (2020) Pipette and paper: combining molecular and genealogical methods to assess a Nile tilapia (Oreochromis niloticus) breeding program. Aquaculture, 523. 735171.

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Book Chapter

Chong, Chou-Min, Shakir, Mohamed Zahuwaan, Lai, Kok-Song, Liew, Hon Jung, and Loh, Jiun-Yan (2023) Microbes and fish diseases. In: Jyothis, Mathew, Radhakrishnan, E.K., Midhun, Sebastian Jose, and Ajay, Kumar, (eds.) Recent Advances in Aquaculture Microbial Technology. Academic Press, London, United Kingdom, pp. 65-102.

Report

Nankervis, L., Barbero, G., Irving, A., Joyce, M., Pizzutto, M., Diedrich, A., and Condon, K. (2022) Future-proofing the NA aquaculture industry need for skilled staff to 2050. Report. CRC for Developing Northern Australia, Townsville.

Bansemer, M.S., Stone, D.A.J., Skordas, P, Currie, K., Crowe, B., Nankervis, L., Salini, M., and UNSPECIFIED (2019) 3.1.3.1. Manuscript - Reducing dietary wild derived fish meal inclusion levels in production diets for large Yellowtail Kingfish (Seriola lalandi) (N5/N2; Output 2a) [In: Stone, D.A.J., Booth, M.A. and Clarke, S.M. (eds).Growing a Profitable, Innovative and Collaborative Australian Yellowtail Kingfish Aquaculture Industry: Bringing ‘White’ Fish to the Market (DAWR Grant Agreement RnD4Profit-14-01-027)]. Report Section. South Australian Research and Development Institute (SARDI), Adelaide, SA, Australia.

Thesis

Chen, Jun Yu (2021) Captive breeding of orchid dottyback Pseudochromis fridmani: reproduction, ontogeny and larval feeding regime. PhD thesis, James Cook University.

Marc, Adrien François (2021) Development of advanced reproductive techniques to characterize fertility and accelerate selective breeding in barramundi (Lates calcarifer). PhD thesis, James Cook University.

Candebat, Caroline Lourdes (2021) Optimizing dietary specifications for yellowtail kingfish, Seriola lalandi: requirements and interactions of sulfur amino acids and taurine. PhD thesis, James Cook University.

Nayfa, Maria George (2020) Domestication in aquaculture fishes - elucidating the genetic consequences in Nile Tilapia (Oreochromis niloticus). PhD thesis, James Cook University.

Condon, Kelly (2019) Management of Betanodavirus infection in Queensland giant grouper, Epinephelus lanceolatus (Bloch). PhD thesis, James Cook University.