A

Abualreesh, Muyassar, Myers, Jaelen, Gurbatow, Jeremy, Johnson, Andrew, Xing, De, Wang, Jinhai, Li, Shangjia, Coogan, Michael, Vo, Khoi, El Husseini, Nour, Creamer, David, Dunham, Rex A., and Butts, Ian A.E. (2021) Development of an effective cryopreservation protocol for Blue Catfish oogonia. North American Journal of Aquaculture, 83 (4). pp. 336-345.

B

Bansemer, Matthew S., Salini, Michael J., Nankervis, Leo, and Stone, David A.J. (2023) Reducing dietary wild derived fishmeal inclusion levels in production diets for large yellowtail kingfish (Seriola lalandi). Aquaculture, 572. 739487.

Budd, Alyssa M., Guppy, Jarrod L., Thepot, Valentin, Domingos, Jose A., and Jerry, Dean R. (2022) Delayed effect of low rearing temperature on gonadal DNA methylation in juvenile barramundi (Lates calcarifer). Aquaculture, 560. 738541.

Budd, Alyssa M., Robins, Julie B., Whybird, Olivia, and Jerry, Dean R. (2022) Epigenetics underpins phenotypic plasticity of protandrous sex change in fish. Ecology and Evolution, 12 (3). e8730.

Banh, Quyen Q. T., Guppy, Jarrod L., Domingos, Jose A., Budd, Alyssa M., Pinto, Ricardo C. C., Marc, Adrien F., and Jerry, Dean R. (2021) Induction of precocious females in the protandrous barramundi (Lates calcarifer) through implants containing 17β-estradiol - effects on gonadal morphology, gene expression and DNA methylation of key sex genes. Aquaculture, 539. 736601.

Bansemer, M.S., Stone, D.A.J., Skordas, P, Currie, K., Crowe, B., Nankervis, L., Salini, M., and UNSPECIFIED (2019) 3.1.3.1. Manuscript - Reducing dietary wild derived fish meal inclusion levels in production diets for large Yellowtail Kingfish (Seriola lalandi) (N5/N2; Output 2a) [In: Stone, D.A.J., Booth, M.A. and Clarke, S.M. (eds).Growing a Profitable, Innovative and Collaborative Australian Yellowtail Kingfish Aquaculture Industry: Bringing ‘White’ Fish to the Market (DAWR Grant Agreement RnD4Profit-14-01-027)]. Report Section. South Australian Research and Development Institute (SARDI), Adelaide, SA, Australia.

C

Chew, Xian Zhe, Gibson-Kueh, Susan, Jerry, Dean R., and Shen, Xueyan (2023) Comparison of intestinal bacterial communities in asymptomatic and diseased Asian seabass (Lates calcarifer) with chronic enteritis and mixed bacterial infections. Aquaculture, 572. 739516.

Candebat, Caroline Lordes, Eddie, Thibault, Marc, Adrien Francois, Fernando, Fernando, and Nankervis, Leo (2023) Exploring the physiological plasticity of giant grouper (Epinephelus lanceolatus) to dietary sulfur amino acids and taurine to measure dietary requirements and essentiality. Fish Physiology and Biochemistry. (In Press)

Chen, Jun Yu, Zeng, Chaoshu, and Cobcroft, Jennifer M. (2023) Year-Round Spawning, Filial Cannibalism, and Embryonic and Larval Development of the Coral Reef Fish Orchid Dottyback, Pseudochromis fridmani. Fishes, 8 (9). 451.

Chew, Xian Zhe, and Gibson-Kueh, Susan (2023) The haematology of clinically healthy, farmed juvenile Asian seabass (Lates calcarifer Bloch)-reference intervals, and indicators of subclinical disease. Journal of Fish Diseases. (In Press)

Candebat, Caroline Lourdes, Stephens, Frances, Booth, Mark A., Fernando, Fernando, Lopata, Andreas, and Pirozzi, Igor (2022) Adequate levels of dietary sulphur amino acids impart improved liver and gut health in juvenile yellowtail kingfish (Seriola lalandi). British Journal of Nutrition, 129. pp. 1289-1312.

Chen, Jun Yu, Zeng, Chaoshu, and Cobcroft, Jennifer M. (2022) Digestive system ontogeny and the effects of weaning time on larval survival, growth and pigmentation development of orchid dottyback Pseudochromis fridmani. Aquaculture, 549. 737737.

Chen, Jun Yu (2021) Captive breeding of orchid dottyback Pseudochromis fridmani: reproduction, ontogeny and larval feeding regime. PhD thesis, James Cook University.

Candebat, Caroline Lourdes (2021) Optimizing dietary specifications for yellowtail kingfish, Seriola lalandi: requirements and interactions of sulfur amino acids and taurine. PhD thesis, James Cook University.

Chen, Jun Yu, and Zeng, Chaoshu (2021) Transition to Artemia feeding phase for orchid dottyback Pseudochromis fridmani larvae: establishing suitable prey shift time and strategy. Aquaculture, 545. 737180.

Chen, Jun Yu, and Zeng, Chaoshu (2021) The effects of live prey and greenwater on the early larval rearing of orchid dottyback Pseudochromis fridmani. Aquaculture, 543. 737008.

Candebat, Caroline L., Booth, Mark A., and Pirozzi, Igor (2021) The sulfur amino acid requirements of juvenile Yellowtail Kingfish (Seriola lalandi). Aquaculture, 534. 736234.

Condon, Kelly (2019) Management of Betanodavirus infection in Queensland giant grouper, Epinephelus lanceolatus (Bloch). PhD thesis, James Cook University.

D

Domingos, Jose A., Shen, Xueyan, Terence, Celestine, Senapin, Saengchan, Dong, Ha Thanh, Tan, Marie R., Gibson-Kueh, Susan, and Jerry, Dean R. (2021) Scale Drop Disease Virus (SDDV) and Lates calcarifer Herpes Virus (LCHV) coinfection downregulate immune-relevant pathways and cause splenic and kidney necrosis in barramundi under commercial farming conditions. Frontiers in Genetics, 12. 666897.

Dixon, P.F., Ngoh, G.-H., Stone, D.M., Chang, S.F., Way, K., and Kueh, S. (2008) Proposal for a fourth aquabirnavirus serogroup. Archives of Virology, 153. pp. 1937-1941.

E

Estrada, Uriel Rodriguez, Yasumaru, Fanny Ayumi, Tacon, Albert, and Lemos, Daniel (2016) Cobia (Rachycentron canadum): A selected annotated bibliography on aquaculture, general biology and fisheries 1967-2015. Reviews in Fisheries Science & Aquaculture, 24 (1). pp. 1-97.

F

Fernando, Fernando, Candebat, Caroline L., Strugnell, Jan M., Andreakis, Nikolaos, and Nankervis, Leo (2022) Dietary supplementation of astaxanthin modulates skin color and liver antioxidant status of giant grouper (Epinephelus lanceolatus). Aquaculture Reports, 26. 101266.

G

Glencross, Brett, Fracalossi, Débora Machado, Hua, Katheline, Izquierdo, Marisol, Ma, Kangsen, Øverland, Margareth, Robb, David, Roubach, Rodrigo, Schrama, Johan, Small, Brian, Tacon, Albert, Valente, Luisa M.P., Viana, Maria-Teresa, Xie, Shouqi, and Yakupityage, Amararatne (2023) Harvesting the benefits of nutritional research to address global challenges in the 21st century. Journal of the World Aquaculture Society, 54 (2). pp. 343-363.

Gibson-Kueh, S., Awate, S., and Schrittwieser, M (2023) The pathology of Lates calcarifer herpesviral disease—Disseminated intravascular coagulation explains mortality spikes. Journal of Fish Diseases, 46 (8). pp. 861-871.

Guppy, Jarrod L., Marc, Adrien F., and Jerry, Dean R. (2022) Maturation and spawning performance of hormonally-induced precocious female barramundi (Lates calcarifer) and implications of their use in selective breeding. Aquaculture, 552. 737991.

Gibson-Kueh, Susan, Terence, Celestine, Chew, Xian Zhe, Uichanco, Joseph Angelo, and Shen, Xueyan (2021) PCR, in-situ hybridization, and phylogenetic analysis suggest that ‘big belly’ disease in barramundi, Lates calcarifer (Bloch), is caused by a novel Vibrio species. Journal of Fish Diseases, 44 (12). pp. 1985-1992.

Gibson-Kueh, Susan, and Uichanco, Joseph Angelo (2021) The pathology associated with putative algal toxicosis in red snapper, Lutjanus species (Bloch 1790). Journal of Fish Diseases, 44 (6). pp. 857-861.

H

Hutson, Kate Suzanne, Mooney, Allan James, Ernst, Ingo, Brazenor, Alexander Karlis, Scheel, Max, and Atalah, Javier (2022) A decision support tool for parasite management in fish aquaculture. Reviews in Aquaculture, 14 (3). pp. 1656-1670.

J

Jerry, Dean R., Jones, David B., Lillehammer, Marie, Massault, Cecile, Loughnan, Shannon, Cate, Holly S., Harrison, Paul J., Strugnell, Jan M., Zenger, Kyall R., and Robinson, Nicholas A. (2022) Predicted strong genetic gains from the application of genomic selection to improve growth related traits in barramundi (Lates calcarifer). Aquaculture, 549. 737761.

L

Leahy, Susannah M., Jerry, Dean R., Wedding, Brett B.C., Robins, Julie, Wright, Carole L., Sadekov, Aleksey, David, Stephen B., Jones, David B., Williams, Samuel M., Grauf, Steve, Pavich, Luke, McLennan, Mark, Sellini, Michelle J., Goldsbury, Julie A., and Saunders, Richard J. (2023) Multimethod approach to advance provenance determination of fish in stocked systems. Canadian Journal of Fisheries and Aquatic Sciences, 80. pp. 1410-1424.

Liyanage, D.S., Lee, Sukkyoung, Yang, Hyerim, Lim, Chaehyeon, Omeka, W.K.M., Sandamalika, W.M. Gayashani, Udayantha, H.M.V., Kim, Gaeun, Ganeshalingam, Subothini, Jeong, Taehyug, Oh, Seong-Rip, Won, Seung-Hwan, Koh, Hyoung-Bum, Kim, Mun-Kwan, Jones, David B., Massault, Cecile, Jerry, Dean R., and Lee, Jehee (2022) Genome-wide association study of VHSV-resistance trait in Paralichthys olivaceus. Fish and Shellfish Immunology, 124. pp. 391-400.

M

Marc, Adrien F., Guppy, Jarrod L., Goldsbury, Julie, Rudd, Donna, Cate, Holly S., Paris, Damien B.B.P., and Jerry, Dean R. (2024) Characterization of sperm quality in captive-bred barramundi (Lates calcarifer): Effect on spawning performance and paternal contribution in mass-spawning events. Aquaculture, 585. 740717.

Marcoli, Roberta, Symonds, Jane E., Walker, Seumas P., Battershill, Christopher N., and Bird, Steve (2023) Characterising the Physiological Responses of Chinook Salmon (Oncorhynchus tshawytscha) Subjected to Heat and Oxygen Stress. Biology, 12. 1342.

Marc, Adrien, Guppy, Jarrod L., Marshall, Hayley, Jerry, Dean R., Rudd, Donna, and Paris, Damien B.B.P. (2023) Optimization of a non-activating medium for short-term chilled storage of barramundi (Lates calcarifer) testicular spermatozoa. Fish Physiology and Biochemistry, 49. pp. 559-576.

Marcoli, R., Jones, D.B., Massault, C., Marc, A.F., Moran, M., Harrison, P.J., Cate, H.S., Lopata, A.L., and Jerry, D.R. (2023) The skin structure in multiple color variants of barramundi (Lates calcarifer): A histological, immunohistochemical and ultrastructural overview. Aquaculture, 576. 739859.

Marc, Adrien François (2021) Development of advanced reproductive techniques to characterize fertility and accelerate selective breeding in barramundi (Lates calcarifer). PhD thesis, James Cook University.

Mendonça, Raoani Cruz, Chen, Jun Yu, Zeng, Chaoshu, and Tsuzuki, Mônica Yumi (2020) Embryonic and early larval development of two marine angelfish, Centropyge bicolor and Centropyge bispinosa. Zygote, 28 (3). pp. 196-202.

Moyano, Marta, Illing, Björn, Polte, Patrick, Kotterba, Paul, Zablotski, Yury, Gröhsler, Tomas, Hüdepohl, Patricia, Cooke, Steven J., and Peck, Myron A. (2020) Linking individual physiological indicators to the productivity of fish populations: a case study of Atlantic herring. Ecological Indicators, 113. 106146.

N

Nankervis, Leo (2023) How are some fish able to change colour or complexion depending on their mood? Townsville Bulletin, 1 July 2023. p. 61.

Nankervis, Leo, Cobcroft, Jennifer M., Nguyen, Nguyen V., and Rimmer, Michael A. (2022) Advances in practical feed formulation and adoption for hybrid grouper (Epinephelus fuscoguttatus ♀ × E. lanceolatus ♂) aquaculture. Reviews in Aquaculture, 14 (1). pp. 288-307.

Nankervis, L., Barbero, G., Irving, A., Joyce, M., Pizzutto, M., Diedrich, A., and Condon, K. (2022) Future-proofing the NA aquaculture industry need for skilled staff to 2050. Report. CRC for Developing Northern Australia, Townsville.

Nayfa, Maria George (2020) Domestication in aquaculture fishes - elucidating the genetic consequences in Nile Tilapia (Oreochromis niloticus). PhD thesis, James Cook University.

Nayfa, Maria G., Jones, David B., Lind, Curtis E., Benzie, John A.H., Jerry, Dean R., and Zenger, Kyall R. (2020) Pipette and paper: combining molecular and genealogical methods to assess a Nile tilapia (Oreochromis niloticus) breeding program. Aquaculture, 523. 735171.

O

Omeka, W.K.M., Liyanage, D.S., Lee, Sukkyoung, Lim, Chaehyeon, Yang, Hyerim, Sandamalika, W.M.Gayashani, Udayantha, H.M.V., Kim, Gaeun, Ganeshalingam, Subothini, Jeong, Taehyug, Oh, Seong-Rip, Won, Seung-Hwan, Koh, Hyoung-Bum, Kim, Mun-Kwan, Jones, David B., Massault, Cecile, Jerry, Dean R., and Lee, Jehee (2022) Genome-wide association study (GWAS) of growth traits in olive flounder (Paralichthys olivaceus). Aquaculture, 555. 738257.

Ong, Jun Kiat Edwin, Nair, Thiviya, Ng, Tze Hann, Domingos, Jose A., and Gomes, Giana Bastos (2022) Identification of scale drop disease virus based on environment DNA in an aquaculture facility of Singapore. Aquaculture, 563. 738993.

Orbán, László, Shen, Xueyan, Phua, Norman, and Varga, László (2021) Toward genome-based selection in Asian seabass: what can we learn from other food fishes and farm animals? Frontiers in Genetics, 12. 506754.

P

Poon, Zhi Weng Josiah, Shen, Xueyan, Angelo, Joseph, Terence, Celestine, Chua, Shi Wei Gavin, and Domingos, Jose A. (2022) Comparative transcriptome analysis reveals factors involved in the influence of dietary astaxanthin on body colouration of Malabar Snapper (Lutjanus malabaricus). Aquaculture, 562. 738874.

S

Santillan, Ezequiel, Yasumaru, Fanny, Vethathirri, Ramanujam Srinivasan, Thi, Sara Swa, Hoon, Hui Yi, Chan, Diana Pek Sian, and Wuertz, Stefan (2024) Microbial community-based protein from soybean-processing wastewater as a sustainable alternative fish feed ingredient. Scientific Reports, 14. 2620.

Shen, Xueyan, Yáñez, José M., Gomes, Giana, Poon, Zhi Weng Josiah, Foster, Derick, Alarcon, Jorge, and Domingos, Jose A. (2023) Comparative gonad transcriptome analysis in cobia (Rachycentron canadum). Frontiers in Genetics, 14. 1128943.

Shen, Xueyan, Niu, Yong Chao, Uichanco, Joseph Angelo V., Phua, Norman, Bhandare, Pranjali, Thevasagayam, Natascha May, Prakki, Sai Rama Sridatta, and Orbán, László (2023) Mapping of a major QTL for increased robustness and detection of genome assembly errors in Asian seabass (Lates calcarifer). BMC Genomics, 24. 449.

Shinn, Andrew P., Avenant-Oldewage, Annemarie, Bondad-Reantaso, Melba G., Cruz-Laufer, Armando J., García-Vásquez, Adriana, Hernández-Orts, Jesús S., Kuchta, Roman, Longshaw, Matt, Metselaar, Matthijs, Pariselle, Antoine, Pérez-Ponce de León, Gerardo, Pradhan, Pravata Kumar, Rubio-Godoy, Miguel, Sood, Neeraj, Vanhove, Maarten P.M., and Deveney, Marty R. (2023) A global review of problematic and pathogenic parasites of farmed tilapia. Reviews in Aquaculture, 15 (Suppl.1). pp. 92-153.

Shao, Luchang, and Zeng, Chaoshu (2020) Survival, growth, ingestion rate and foraging behavior of larval green mandarin fish (Synchiropus splendidus) fed copepods only versus co-fed copepods with rotifers. Aquaculture, 520. 734958.

T

Tola, Siriporn, Sommit, Noppasin, Seel-audom, Mintra, Khamtavee, Pimporn, Waiho, Khor, Boonmee, Teerapat, Yuangsoi, Bundit, and Munpholsri, Nut (2022) Effects of dietary tuna hydrolysate supplementation on feed intake, growth performance, feed utilization and health status of Asian sea bass (Lates calcarifer) fed a low fish meal soybean meal-based diet. Aquaculture Research, 53 (11). pp. 3898-3912.

Tsang, Hin Hung, Domingos, Jose A., Westaway, Jacob A.F., Kam, Maximilian H.Y., Huerlimann, Roger, and Bastos Gomes, Giana (2021) Digital droplet PCR-based environmental DNA tool for monitoring Cryptocaryon irritans in a marine fish farm from Hong Kong. Diversity, 13 (8). 350.

Terence, Celestine, Domingos, Jose A., Angelo Uichanco, Joseph, Monteil, Yann, Monteil, Loïc, De Braux, Emmanuel, Banh, Quyen Q.T., Gibson-Kueh, Susan, and Jerry, Dean R. (2021) Early sex change of barramundi Lates calcarifer farmed in Singapore. Aquaculture Reports, 20. 100712.

U

Udayantha, H.M.V., Lee, Sukkyoung, Liyanage, D.S., Lim, Chaehyeon, Jeong, Taehyug, Omeka, W.K.M., Yang, Kyerim, Kim, Gaeun, Lee, Jihun, Nadarajapillai, Kishanthini, Ganeshalingam, Subothini, Park, Cheong-Uk, Lee, Jiwon, Oh, Seong-Rip, Gong, Po, Jang, Yeounghwan, Hyun, Jaemin, Park, Aejen, Koh, Hyoung-Bum, Kim, Mun-Kwan, Jones, David B., Massault, Cecile, Jerry, Dean R., and Lee, Jeehee (2023) Identification of candidate variants and genes associated with temperature tolerance in olive flounders by Genome-Wide Association Study (GWAS). Aquaculture, 576. 739858.

Y

Yasumaru, F., and Lemos, D. (2014) Species specific in vitro protein digestion (pH-stat) for fish: method development and application for juvenile rainbow trout (Oncorhynchus mykiss), cobia (Rachycentron canadum), and Nile tilapia (Oreochromis niloticus). Aquaculture, 426-427. pp. 74-84.