Items where Subject is "31 BIOLOGICAL SCIENCES > 3107 Microbiology > 310703 Microbial ecology"
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Article
Garcias-Bonet, Neus, Roik, Anna, Tierney, Braden, García, Francisca C., Villela, Helena D.M., Dungan, Ashley M., Quigley, Kate M., Sweet, Michael, Berg, Gabriele, Gram, Lone, Bourne, David G., Ushijima, Blake, Sogin, Maggie, Hoj, Lone, Duarte, Gustavo, Hirt, Heribert, Smalla, Kornelia, Rosado, Alexandre S., Carvalho, Susana, Thurber, Rebecca Vega, Ziegler, Maren, Mason, Christopher E., van Oppen, Madeleine J.H., Voolstra, Christian R., and Peixoto, Raquel S. (2024) Horizon scanning the application of probiotics for wildlife. Trends in Microbiology, 32 (3). pp. 252-269.
Rodrigues Amaral, Rodrigo, Love, Robert M., Braga, Tiago, Souza Côrtes, Maria I., Rachid, Caio T.C.C., N. Rôças, Isabela, and Siqueira, José F. (2024) Impact of root canal preparation using two single-file systems on the intra-radicular microbiome of teeth with primary apical periodontitis. Clinical Oral Investigations, 28. 139.
Bourne, David G., Sato, Yui, and Smith, Hillary A. (2024) Microbes guide corals looking to find a home. Trends in Microbiology, 32 (2). pp. 120-121.
Terzin, Marko, Laffy, Patrick W., Robbins, Steven, Yeoh, Yun Kit, Frade, Pedro R., Glasl, Bettina, Webster, Nicole S, and Bourne, David G. (2024) The road forward to incorporate seawater microbes in predictive reef monitoring. Environmental Microbiome, 19. 5.
Webb, Rebecca J., Rush, Catherine, Berger, Lee, Skerratt, Lee F., and Roberts, Alexandra A. (2023) Glutathione is required for growth and cadmium tolerance in the amphibian chytrid fungus, Batrachochytrium dendrobatidis. Biochimie, 220. pp. 22-30.
Quigley, Kate M., Alvarez-Roa, Carlos, Raina, Jean Baptiste, Pernice, Mathieu, and van Oppen, Madeleine J.H. (2023) Heat-evolved microalgal symbionts increase thermal bleaching tolerance of coral juveniles without a trade-off against growth. Coral Reefs, 42. pp. 1227-1232.
Marangon, Emma, Uthicke, Sven, Patel, Frances, Marzinelli, Ezequiel M., Bourne, David G., Webster, Nicole S., and Laffy, Patrick W. (2023) Life-stage specificity and cross-generational climate effects on the microbiome of a tropical sea urchin (Echinodermata: Echinoidea). Molecular Ecology, 32 (20). pp. 5645-5660.
Wada, Naohisa, Iguchi, Akira, Urabe, Yuta, Yoshioka, Yuki, Abe, Natsumi, Takase, Kazuki, Hayashi, Shuji, Kawanabe, Saeko, Sato, Yui, Tang, Sen-Lin, and Mano, Nobuhiro (2023) Microbial mat compositions and localization patterns explain the virulence of black band disease in corals. npj Biofilms and Microbiomes, 9. 15.
Trigo, Sandra, Narvaez, Pauline, Cardoso, Gonçalo C., and Soares, Marta C. (2023) Not so monochromatic: Size-dependency of both sex and color in the cleaner wrasse Labroides dimidiatus. Frontiers in Ecology and Evolution, 11. 1110079.
Motson, Katie, Hutson, Kate S., and Hoey, Andrew S. (2023) Variation in the parasite communities of three co-occurring herbivorous coral reef fishes. Journal of Fish Biology, 102 (4). pp. 757-772.
Li, Jie, Zou, Yiyang, Li, Qiqi, Zhang, Jian, Bourne, David G., Lyu, Yuanjiao, Liu, Cong, and Zhang, Si (2023) A coral-associated actinobacterium mitigates coral bleaching under heat stress. Environmental Microbiome, 18 (1). 83.
Rymer, Tasmin L., and Pillay, Neville (2023) The effects of antibiotics and illness on gut microbial composition in the fawn-footed mosaic-tailed rat (Melomys cervinipes). PLoS ONE, 18. e0281533.
Terrell, Alyx P., Marangon, Emma, Webster, Nicole S., Cooke, Ira, and Quigley, Kate M. (2023) The promotion of stress tolerant Symbiodiniaceae dominance in juveniles of two coral species under simulated future conditions of ocean warming and acidification. Frontiers in Ecology and Evolution, 11. 1113357.
Narvaez, Pauline, Morais, Renato A., Vaughan, David B., Grutter, Alexandra S., and Hutson, Kate S. (2022) Cleaner fish are potential super-spreaders. Journal of Experimental Biology, 225. 15.
Li, Jie, Zou, Yiyang, Yang, Jian, Li, Qiqi, Bourne, David G., Sweet, Michael, Liu, Cong, Guo, Anjie, and Zhang, Si (2022) Cultured Bacteria Provide Insight into the Functional Potential of the Coral-Associated Microbiome. mSystems, 7 (4). e00327-22.
Kuek, Felicity, Motti, Cherie, Zhang, Jia, Cooke, Ira R., Todd, Jonathan D., Miller, David J., Bourne, David G., and Raina, Jean-Baptiste (2022) DMSP production by coral-associated bacteria. Frontiers in Marine Science, 9. 869574.
Paredes, Gabriela F., Viehboeck, Tobias, Markert, Stephanie, Mausz, Michaela A., Sato, Yui, Liebeke, Manuel, König, Lena, and Bulgheresi, Silvia (2022) Differential regulation of degradation and immune pathways underlies adaptation of the ectosymbiotic nematode Laxus oneistus to oxic-anoxic interfaces. Scientific Reports, 12. 9725.
Sato, Yui, Wippler, Juliane, Wentrup, Cecilia, Ansorge, Rebecca, Sadowski, Miriam, Gruber-Vodicka, Harald, Dubilier, Nicole, and Kleiner, Manuel (2022) Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium. Microbiome, 10. 178.
Wada, Naohisa, Hsu, Ming-Tsung, Tandon, Kshitij, Hsiao, Silver Sung-Yun, Chen, Hsing-Ju, Chen, Yu-Hsiang, Chiang, Pei-Wen, Yu, Sheng-Ping, Lu, Chih-Ying, Chiou, Yu-Jing, Tu, Yung-Chi, Tian, Xuejiao, Chen, Bi-Chang, Lee, Der-Chuen, Yamashiro, Hideyuki, Bourne, David G., and Tang, Sen-lin (2022) High-resolution spatial and genomic characterization of coral-associated microbial aggregates in the coral Stylophora pistillata. Science Advances, 8 (27). eabo2431.
Nottingham, Andrew T., Cheesman, Alexander W., Riutta, Terhi, Doughty, Christopher E., Telford, Elizabeth, Huaraca Huasco, Walter, Svátek, Martin, Kvasnica, Jakub, Majalap, Noreen, Malhi, Yadvinder, Meir, Patrick, and Arn Teh, Yit (2022) Large contribution of recent photosynthate to soil respiration in tropical dipterocarp forest revealed by girdling. Journal of Ecology, 110 (2). pp. 387-403.
Thatcher, Callaway, Hoj, Lone, and Bourne, David G. (2022) Probiotics for coral aquaculture: challenges and considerations. Current Opinion in Biotechnology, 73. pp. 380-386.
McKnight, Donald T., Huerlimann, Roger, Bower, Deborah S., Schwarzkopf, Lin, Alford, Ross A., and Zenger, Kyall R. (2022) The interplay of fungal and bacterial microbiomes on rainforest frogs following a disease outbreak. Ecosphere, 13 (7). e4037.
Trevathan-tackett, Stacey M., Kepfer-Rojas, Sebastian, Engelen, Aschwin H., York, Paul, Ola, Anne, Li, Jinquan, Kelleway, Jeffrey J., Jinks, Kristin I., Jackson, Emma L., Adame, Maria Fernanda, Pendall, Elise, Lovelock, Catherine E., Connolly, Rod M., Watson, Anne, Visby, Inger, Trethowan, Allison, Taylor, Ben, Roberts, Tessa N.B., Petch, Jane, Farrington, Lachlan, Djukic, Ika, and Macreadie, Peter I. (2021) Ecosystem type drives tea litter decomposition and associated prokaryotic microbiome communities in freshwater and coastal wetlands at a continental scale. Science of the Total Environment, 782. 146819.
Ezechukwu, Henry C., Diya, Cornelius A., Egoh, Ifunanya J., Abiodun, Mayowa J., Grace, John-Ugwuanya A., Okoh, God'spower R., Adu, Kayode T., and Adegboye, Oyelola A. (2021) Lung microbiota dysbiosis and the implications of SARS-CoV-2 infection in pregnancy. Therapeutic Advances in Infectious Disease, 8.
Jones, Sam P., Kaisermann, Aurore, Ogée, Jérôme, Wohl, Steven, Cheesman, Alexander W., Cernusak, Lucas A., and Wingate, Lisa (2021) Oxygen isotope exchange between water and carbon dioxide in soils is controlled by pH, nitrate and microbial biomass through links to carbonic anhydrase activity. Soil, 7 (1). pp. 145-159.
Drane, Kezia, Huerlimann, Roger, Power, Michelle, Whelan, Anna, Ariel, Ellen, Sheehan, Madoc, and Kinobe, Robert (2021) Testudines as sentinels for monitoring the dissemination of antibiotic resistance in marine environments: an integrative review. Antibiotics, 10 (7). 775.
Quigley, Kate M., Alvarez Roa, Carlos, Torda, Greg, Bourne, David G., and Willis, Bette L. (2020) Co-dynamics of Symbiodiniaceae and bacterial populations during the first year of symbiosis with Acropora tenuis juveniles. MicrobiologyOpen, 9 (2). e959.
Glasl, Bettina, Robbins, Steven, Frade, Pedro R., Marangon, Emma, Laffy, Patrick W., Bourne, David G., and Webster, Nicole N. (2020) Comparative genome-centric analysis reveals seasonal variation in the function of coral reef microbiomes. ISME Journal: multidisciplinary journal of microbial ecology, 14. pp. 1435-1450.
Ücker, Merle, Ansorge, Rebecca, Sato, Yui, Sayavedra, Lizbeth, Breusing, Corinna, and Dubilier, Nicole (2020) Deep-sea mussels from a hybrid zone on the Mid-Atlantic Ridge host genetically indistinguishable symbionts. The ISME Journal, 15. pp. 3076-3083.
Assis, Juliana M., Abreu, Fernanda, Villela, Helena M.D., Barno, Adam, Valle, Rafael F., Vieira, Rayssa, Taveira, Igor, Duarte, Gustavo, Bourne, David G., Høj, Lone, and Peixoto, Raquel S. (2020) Delivering beneficial microorganisms for corals: rotifers as carriers of probiotic bacteria. Frontiers In Microbiology, 11. 608506.
Smith, Hillary A., Conlan, Jessica A., Pollock, F. Joseph, Wada, Naohisa, Shore, Amanda, Hung, Julia Yun-Hsuan, Aeby, Greta S., Willis, Bette L., Francis, David S., and Bourne, David G. (2020) Energy depletion and opportunistic microbial colonisation in white syndrome lesions from corals across the Indo-Pacific. Scientific Reports, 10. 19990.
Sato, Yui, Wippler, Juliane, Wentrup, Cecilia, Dubilier, Nicole, and Kleiner, Manuel (2020) High-Quality Draft Genome Sequences of Two Deltaproteobacterial Endosymbionts, Delta1a and Delta1b, from the Uncultured Sva0081 Clade, Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis. Microbiology Resource Announcements, 9 (16). e00276-20.
Sato, Yui, Wippler, Juliane, Wentrup, Cecilia, Woyke, Tanja, Dubilier, Nicole, and Kleiner, Manuel (2020) High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis. Microbiology Resource Announcements, 9 (31). e00704-20.
Allard, Sarah M., Costa, Matthew T., Bulseco, Ashley N., Helfer, Véronique, Wilkins, Laetitia G.E., Hassenrück, Christiane, Zengler, Karsten, Zimmer, Martin, Erazo, Natalia, Mazza Rodrigues, Jorge L., Duke, Norman, Melo, Vânia M.M., Vanwonterghem, Inka, Junca, Howard, Makonde, Huxley M., Jiménez, Diego Javier, Tavares, Tallita C.L., Fusi, Marco, Daffonchio, Daniele, Duarte, Carlos M., Peixoto, Raquel S., Rosado, Alexandre S., Gilbert, Jack A., and Bowman, Jeff (2020) Introducing the mangrove microbiome initiative: identifying microbial research priorities and approaches to better understand, protect, and rehabilitate mangrove ecosystems. mSystems, 5 (5). e0065820.
McKnight, Donald T., Zenger, Kyall R., Alford, Ross A., and Huerlimann, Roger (2020) Microbiome diversity and composition varies across body areas in a freshwater turtle. Microbiology, 166 (5). pp. 440-452.
Marchioro, Giulia, Glasl, Bettina, Engelen, Aschwin H., Serrao, Ester A., Bourne, David G., Webster, Nicole S., and Frade, Pedro R. (2020) Microbiome dynamics in the tissue and mucus of acroporid corals differ in relation to host and environmental parameters. PeerJ, 8. e9644.
Botté, E.S., Luter, H.M., Marangon, E., Patel, F., Uthicke, S., and Webster, N.S. (2020) Simulated future conditions of ocean warming and acidification disrupt the microbiome of the calcifying foraminifera Marginopora vertebralis across life stages. Environmental Microbiology Reports, 12 (6). pp. 693-701.
Frade, Pedro R., Glasl, Bettina, Matthews, Samuel A., Mellin, Camille, Serrão, Ester A., Wolfe, Kennedy, Mumby, Peter J., Webster, Nicole S., Bourne, David G., and UNSPECIFIED (2020) Spatial patterns of microbial communities across surface waters of the Great Barrier Reef. Communications Biology, 3. 442.
Epstein, Hannah E., Smith, Hillary A., Torda, Gergely, and van Oppen, Madeleine J. H. (2019) Microbiome engineering: enhancing climate resilience in corals. Frontiers in Ecology and the Environment, 17 (2). pp. 100-108.
Blasdell, Kim R., Morand, Serge, Perera, David, and Firth, Cadhla (2019) Association of rodent-borne Leptospira spp. with urban environments in Malaysian Borneo. PLoS Neglected Tropical Diseases, 13 (2). e0007141.
Glasl, Bettina, Smith, Caitlin E., Bourne, David G., and Webster, Nicole S. (2019) Disentangling the effect of host-genotype and environment on the microbiome of the coral Acropora tenuis. PeerJ, 7. e6377.
Jensen, Sigmund, Hovland, Martin, Lynch, Michael D.J., and Bourne, David G. (2019) Diversity of deep-water coral-associated bacteria and comparison across depth gradients. FEMS Microbiology Ecology, 95 (7). fiz091.
Blasdell, Kim R., Perera, David, and Firth, Cadhla (2019) High prevalence of rodent-borne Bartonella spp. in urbanizing environments in Sarawak, Malaysian Borneo. American Journal of Tropical Medicine and Hygiene, 100 (3). pp. 506-509.
McKnight, Donald T., Huerlimann, Roger, Bower, Deborah S., Schwarzkopf, Lin, Alford, Ross A., and Zenger, Kyall R. (2019) Methods for normalizing microbiome data: an ecological perspective. Methods in Ecology and Evolution, 10 (3). pp. 389-400.
Glasl, Bettina, Bourne, David G., Frade, Pedro R., Thomas, Torsten, Schaffelke, Britta, and Webster, Nicole S. (2019) Microbial indicators of environmental perturbations in coral reef ecosystems. Microbiome, 7. 94.
Cooke, Ira, Mead, Oliver, Whalen, Casey, Boote, Chloe, Moya, Aurelie, Ying, Hua, Robbins, Steven, Strugnell, Jan M., Darling, Aaron, Miller, David, Voolstra, Christian, and Adamska, Maya (2019) Molecular techniques and their limitations shape our view of the holobiont. Zoology, 137. 125695.
Morris, Luke A., Voolstra, Christian R., Quigley, Kate M., Bourne, David G., and Bay, Line K. (2019) Nutrient availability and metabolism Affect the stability of coral–Symbiodiniaceae symbioses. Trends in Microbiology, 27 (8). pp. 678-689.
Epstein, Hannah E., Torda, Gergely, Munday, Philip L., and van Oppen, Madeleine J.H. (2019) Parental and early life stage environments drive establishment of bacterial and dinoflagellate communities in a common coral. ISME Journal: multidisciplinary journal of microbial ecology, 13 (6). pp. 1635-1638.
Purkiss, Terence, and Lach, Lori (2019) Pathogen spillover from Apis mellifera to a stingless bee. Proceedings of the Royal Society of London Series B, Biological Sciences, 286. 20191071.
Pollock, F. Joseph, Lamb, Joleah B., van de Water, Jeroen A. J. M., Smith, Hillary A., Schaffelke, Britta, Willis, Bette L., and Bourne, David G. (2019) Reduced diversity and stability of coral-associated bacterial communities and suppressed immune function precedes disease onset in corals. Royal Society Open Science, 6 (6). 190355.
West, Annie G., Waite, David W., Deines, Peter, Bourne, David G., Digby, Andrew, McKenzie, Valerie J., and Taylor, Michael W. (2019) The microbiome in threatened species conservation. Biological Conservation, 229. pp. 85-98.
Schrameyer, Verena, York, Paul H., Chartrand, Katie, Ralph, Peter J., Kuhl, Michael, Brodersen, Kasper Elgetti, and Rasheed, Michael A. (2018) Contrasting impacts of light reduction on sediment biogeochemistry in deep- and shallow-water tropical seagrass assemblages (Green Island, Great Barrier Reef). Marine Environmental Research, 136. pp. 38-47.
Pollock, F. Joseph, McMinds, Ryan, Smith, Styles, Bourne, David G., Willis, Bette L., Medina, Mónica, Thurber, Rebecca Vega, and Zaneveld, Jesse R. (2018) Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny. Nature Communications, 9. 4921. pp. 1-13.
Hoj, Lone, Levy, Natalie, Baillie, Brett K., Clode, Peta L., Strohmaier, Raphael C., Siboni, Nachshon, Webster, Nicole S., Uthicke, Sven, and Bourne, David G. (2018) Crown-of-thorns sea star Acanthaster cf. solaris has tissue-characteristic microbiomes with potential roles in health and reproduction. Applied and Environmental Microbiology, 84 (13).
Mohamed, Amin R., Cumbo, Vivian R., Harii, Saki, Shinzato, Chuya, Chan, Cheong Xin, Ragan, Mark A., Satoh, Nori, Ball, Eldon E., and Miller, David J. (2018) Deciphering the nature of the coral-Chromera association. ISME Journal: multidisciplinary journal of microbial ecology, 12 (3). pp. 776-790.
DiPerna, Stephanie, Hoogenboom, Mia, Noonan, Sam, and Fabricius, Katharina (2018) Effects of variability in daily light integrals on the photophysiology of the corals Pachyseris speciosa and Acropora millepora. PLoS ONE, 13 (9). e0203882.
O'Brien, Paul A., Smith, Hillary A., Fallon, Stewart, Fabricius, Katharina, Willis, Bette L., Morrow, Kathleen M., and Bourne, David G. (2018) Elevated CO2 has little influence on the bacterial communities associated with the pH-tolerant coral, massive Porites spp. Frontiers in Microbiology, 9. 2621.
Ramsby, Blake D., Hoogenboom, Mia O., Whalan, Steve, and Webster, Nicole S. (2018) Elevated seawater temperature disrupts the microbiome of an ecologically important bioeroding sponge. Molecular Ecology, 27 (8). pp. 2124-2137.
Glasl, Bettina, Smith, Caitlin E., Bourne, David G., and Webster, Nicole S. (2018) Exploring the diversity-stability paradigm using sponge microbial communities. Scientific Reports, 8. 8425.
Machado, Lorenna, Tomkins, Nigel, Magnusson, Marie, Midgley, David J., de Nys, Rocky, and Rosewarne, Carly P. (2018) In vitro response of rumen microbiota to the antimethanogenic red acroalga Asparagopsis taxiformis. Microbial Ecology, 75 (3). pp. 811-818.
Kumar, Ravinder, Singh, Lakhveer, Zularisam, A.W., and Hai, Faisal I. (2018) Microbial fuel cell is emerging as a versatile technology: a review on its possible applications, challenges and strategies to improve the performances. International Journal of Energy Research, 42 (2). pp. 369-394.
von May, Rudolf, Catenazzi, Alessandro, Santa-Cruz, Roy, Kosch, Tiffany A., and Vredenburg, Vance T. (2018) Microhabitat temperatures and prevalence of the pathogenic fungus batrachochytrium dendrobatidis in lowland amazonian frogs. Tropical Conservation Science, 11.
Hernandez-Agreda, Alejandra, Leggat, William, Bongaerts, Pim, Herrera, Cesar, and Ainsworth, Tracy D. (2018) Rethinking the coral microbiome: simplicity exists within a diverse microbial biosphere. mBio, 9 (5).
Sorek, Michal, Schnytzer, Yisrael, Ben-Asher, Hiba Waldman, Caspi, Vered Chalifa, Chen, Chii-Shiarng, Miller, David J., and Levy, Oren (2018) Setting the pace: host rhythmic behaviour and gene expression patterns in the facultatively symbiotic cnidarian Aiptasia are determined largely by Symbiodinium. Microbiome, 6. 83.
Pirotta, Vanessa, Smith, Alastair, Ostrowski, Martin, Russell, Dylan, Jonsen, Ian D., Grech, Alana, and Harcourt, Robert (2017) An economical custom-built drone for assessing whale health. Frontiers in Marine Science, 4. 425.
Elumalai, Punniyakotti, Parthipan, Punniyakotti, Obulisamy, Karthikeyan Parthiba, and Rajasekar, Aruliah (2017) Enzyme-mediated biodegradation of long-chain n-alkanes (C₃₂ and C₄₀) by thermophilic bacteria. 3 Biotech, 7. 116.
Ahasan, Md. Shamim, Waltzek, Thomas B., Huerlimann, Roger, and Ariel, Ellen (2017) Fecal bacterial communities of wild-captured and stranded green turtles (Chelonia mydas) on the Great Barrier Reef. FEMS Microbiology Ecology, 93 (12). fix139.
Borzée, Amaël, Kosch, Tiffany A., Kim, Miyeon, and Jang, Yikweon (2017) Introduced bullfrogs are associated with increased Batrachochytrium dendrobatidis prevalence and reduced occurrence of Korean treefrogs. PLoS ONE, 12. e0177860.
Chidambarampadmavathy, K., Karthikeyan, O.P., Huerlimann, R., Maes, G.E., and Heimann, K. (2017) Response of mixed methanotrophic consortia to different methane to oxygen ratios. Waste Management, 61. pp. 220-228.
Chidambarampadmavathy, Karthigeyan, Obulisamy, Karthigeyan, Huerlimann, Roger, Maes, Gregory. E., and Heimann, Kirsten (2017) Responses of mixed methanotrophic consortia to variable Cu2+/Fe2+ ratios. Journal of Environmental Management, 197. pp. 159-166.
Peterson, Anna C., Ghersi, Bruno M., Alda, Fernando, Firth, Cadhla, Frye, Matthew J., Bai, Ying, Osikowicz, Lynn M., Riegel, Claudia, Lipkin, W. Ian, Kosoy, Michael Y., and Blum, Michael J. (2017) Rodent-borne Bartonella infection varies according to host species within and among cities. EcoHealth, 14 (4). pp. 771-782.
Pollock, F. Joseph, Wada, Naoisha, Torda, Gergely, Willis, Bette L., and Bourne, David G. (2017) White syndrome-affected corals have a distinct microbiome at disease lesion fronts. Applied and Environmental Microbiology, 83 (2). e02799-16. pp. 1-15.
Wessels, Wiebke, Sprungala, Susanne, Watson, Sue-Ann, Miller, David J., and Bourne, David G. (2017) The microbiome of the octocoral Lobophytum pauciflorum: minor differences between sexes and resilience to short-term stress. FEMS Microbiology Ecology, 93 (5). pp. 1-13.
Ainsworth, T.D., Fordyce, A.J., and Camp, E.F. (2017) The other microeukaryotes of the coral reef microbiome. Trends in Microbiology, 25 (12). pp. 980-991.
Jensen, Sigmund, V. Fortunato, Sofia A., Hoffman, Friederike, Hoem, Solveig, Tore Rapp, Hans, Øvreås, Lise, and Torsvik, Vigdis L. (2017) The relative abundance and transcriptional activity of marine sponge-associated microorganisms emphasizing groups involved in sulfur cycle. Microbial Ecology, 73 (3). pp. 668-676.
Guernier, Vanina, Lagadec, Erwan, Cordonin, Colette, Le Minter, Gildas, Gomard, Yann, Pagès, Frédéric, Jaffar-Bandjee, Marie-Christine, Michault, Alain, Tortosa, Pablo, and Dellagi, Koussay (2016) Human leptospirosis on Reunion Island, Indian Ocean: are rodents the (only) ones to blame? PLoS Neglected Tropical Diseases, 10 (6). e0004733. pp. 1-19.
Guernier, Vanina, Milinovich, Gabriel J., Bezerra Santos, Marcos Antonio, Haworth, Mark, Coleman, Glen, and Soares Magalhaes, Ricardo J. (2016) Use of big data in the surveillance of veterinary diseases: early detection of tick paralysis in companion animals. Parasites & Vectors, 9. 303. pp. 1-10.
Wakelin, S.A., Gerard, E., van Koten, C., Banabas, M., O'Callaghan, M., and Nelson, P.N. (2016) Soil physicochemical properties impact more strongly on bacteria and fungi than conversion of grassland to oil palm. Pedobiologia, 59 (3). pp. 83-91.
O'Brien, Paul A., Morrow, Kathleen M., Willis, Bette L., and Bourne, David G. (2016) Implications of ocean acidification for marine microorganisms from the free-living to the host-associated. Frontiers in Marine Science, 3. 47. pp. 1-14.
Angly, Florent E., Pantos, Olga, Morgan, Thomas C., Rich, Virginia, Tonin, Hemerson, Bourne, David G., Mercurio, Philip, Negri, Andrew P., and Tyson, Gene W. (2016) Diuron tolerance and potential degradation by pelagic microbiomes in the Great Barrier Reef lagoon. PeerJ, 4. e1758. pp. 1-23.
Wada, Naohisa, Pollock, Frederic J., Willis, Bette L., Ainsworth, Tracy, Mano, Nobuhiro, and Bourne, David G. (2016) In situ visualization of bacterial populations in coral tissues: pitfalls and solutions. PeerJ, 4. e2424.
Bourne, David G., Morrow, Kathleen M., and Webster, Nicole S. (2016) Insights into the coral microbiome: underpinning the health and resilience of reef ecosystems. Annual Review of Microbiology, 70. pp. 317-340.
Sato, Yui, Civiello, Michael, Bell, Sara C., Willis, Bette L., and Bourne, David G. (2016) Integrated approach to understanding the onset and pathogenesis of black band disease in corals. Environmental Microbiology, 18 (3). pp. 752-765.
Bissett, Andrew, Fitzgerald, Anna, Meintjes, Thys, Mele, Pauline M., Reith, Frank, Dennis, Paul G., Breed, Martin F., Brown, Belinda, Brown, Mark V., Brugger, Joel, Byrne, Margaret, Caddy-Retalic, Stefan, Carmody, Bernie, Coates, David J., Correa, Carolina, Ferrari, Belinda C., Gupta, Vadakattu V.S.R., Hamonts, Kelly, Haslem, Asha, Hugenholtz, Philip, Karan, Mirko, Koval, Jason, Lowe, Andrew J., McDonald, Stuart, McGrath, Leanne, Martin, David, Morgan, Matt, North, Kristin I., Paungfoo-Lonhienne, Chanyarat, Pendall, Elise, Phillips, Lori, Pirzl, Rebecca, Powell, Jeff R., Ragan, Mark A., Schmidt, Susanne, Seymour, Nicole, Snape, Ian, Stephen, John R., Stevens, Matthew, Tinning, Matt, Williams, Kristen, Yeoh, Yun Kit, Zammit, Carla M., and Young, Andrew (2016) Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database. GigaScience, 5 (1). pp. 1-11.
Angly, Florent E., Heath, Candice, Morgan, Thomas C., Tonin, Hemerson, Rich, Virginia, Schaffelke, Britta, Bourne, David G., and Tyson, Gene W. (2016) Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events. PeerJ, 4. e1511. pp. 1-24.
Camps, Mercedes, Benavides, Mar, Lema, Kimberley A., Bourne, David G., Grosso, Olivier, and Bonnet, Sophie (2016) Released coral mucus does not enhance planktonic N2 fixation rates. Aquatic Microbial Ecology, 77 (1). pp. 51-63.
Correa, Adrienne M.S., Ainsworth, Tracy D., Rosales, Stephanie M., Thurber, Andrew R., Butler, Christopher R., and Thurber, Rebecca L. Vega (2016) Viral outbreak in corals associated with an in situ bleaching event: atypical herpes-like viruses and a new megavirus infecting Symbiodinium. Frontiers in Microbiology, 7. 127. pp. 1-14.
Hernandez-Agreda, Alejandra, Leggat, William, Bongaerts, Pim, and Ainsworth, Tracy D. (2016) The microbial signature provides insight into the mechanistic basis of coral success across reef habitats. mBio, 7 (4). e00560-16. pp. 1-10.
Wada, Naohisa, Kawamoto, Tadafumi, Sato, Yui, and Mano, Nobuhiro (2016) A novel application of a cryosectioning technique to undecalcified coral specimens. Marine Biology, 163. 117.
Stockwell, Michelle P., Bower, Deborah S., Clulow, John, and Mahony, Michael J. (2016) The role of non-declining amphibian species as alternative hosts for Batrachochytrium dendrobatidis in an amphibian community. Wildlife Research, 43 (4). pp. 341-347.
Book Chapter
Strong, Peter James, Karthikeyan, Obulisamy Parthiba, Zhu, Jing, Clarke, William, and Wu, Weixiang (2017) Methanotrophs: methane mitigation, denitrification and bioremediation. In: Singh, Jay Shankar, and Seneviratne, Gamini, (eds.) Agro-Environmental Sustainability: managing environmental pollution. Springer, Cham, Switzerland, pp. 19-40.
Kumar, Ravinder, Singh, Lakhveer, and Wahid, Zularisam Ab. (2016) Role of Microorganisms in Microbial Fuel Cells for Bioelectricity Production. In: Kalia, Vipin Chandra, (ed.) Microbial Factories: Biofuels, waste treatment. Springer, New Delhi, India, pp. 135-154.
Thesis
Marangon, Emma (2023) Coral reef symbioses under a changing climate: an integrative approach. PhD thesis, James Cook University.
Webb, Rebecca Jane (2022) Novel tools to reduce the virulence of batrachochytrium dendrobatidis. PhD thesis, James Cook University.
Kuek, Felicity W.I. (2021) Dimethylsulphoniopropionate (DMSP) metabolism within the coral holobiont. PhD thesis, James Cook University.
Motson, Katie (2021) The effect of habitat degradation on parasitism of coral reef fishes. PhD thesis, James Cook University.
Morris, Luke Aaron (2021) The role of nutrients in coral bleaching. PhD thesis, James Cook University.