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Bertola, Lorenzo V., Higgie, Megan, Zenger, Kyall R., and Hoskin, Conrad J. (2023) Conservation genomics reveals fine-scale population structuring and recent declines in the Critically Endangered Australian Kuranda Treefrog. Conservation Genetics, 24. pp. 249-264.

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Da Fonseca, Rute R., Couto, Alvarina, Machado, Andre M., Brejova, Brona, Albertin, Carolin B., Silva, Filipe, Gardner, Paul, Baril, Tobias, Hayward, Alex, Campos, Alexandre, Ribeiro, Ângela M., Barrio-Hernandez, Inigo, Hoving, Henk-Jan, Tafur-Jimenez, Ricardo, Chu, Chong, Frazão, Barbara, Petersen, Bent, Peñaloza, Fernando, Musacchia, Francesco, Alexander, Graham C., Osório, Hugo, Winkelmann, Inger, Simakov, Oleg, Rasmussen, Simon, Rahman, M. Ziaur, Pisani, Davide, Vinther, Jakob, Jarvis, Erich, Zhang, Guojie, Strugnell, Jan M., Castro, L. Filipe C., Fedrigo, Olivier, Patricio, Mateus, Li, Qiye, Rocha, Sara, Antunes, Agostinho, Wu, Yufeng, Ma, Bin, Sanges, Remo, Vinar, Tomas, Blagoev, Blagoy, Sicheritz-Ponten, Thomas, Nielsen, Rasmus, and Gilbert, M Thomas P. (2020) A draft genome sequence of the elusive giant squid, Architeuthis dux. GigaScience, 9 (1). giz152.

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Fuller, Zachary L., Mocellin, Veronique J. L., Morris, Luke A., Cantin, Neal, Shepherd, Jihanne, Sarre, Luke, Peng, Julie, Liao, Yi, Pickrell, Joseph, Andolfatto, Peter, Matz, Mikhail, Bay, Line K., and Przeworski, Molly (2020) Population genetics of the coral Acropora millepora: toward genomic prediction of bleaching. Science, 369 (6501). eaba4674.

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Rowland, Joshua, Akbarov, Artur, Eales, James, Xu, Xiaoguang, Dormer, John P., Guo, Hui, Denniff, Matthew, Jiang, Xiao, Ranjzad, Parisa, Nazgiewicz, Alicja, Ribeiro Prestes, Prescilla, Antczak, Andrzej, Szulinska, Monika, Wise, Ingrid A., Zukowska-Szczechowska, Ewa, Bogdanski, Pawel, Woolf, Adrian S., Samani, Nilesh J., Charchar, Fadi J., and Tomaszewski, Maciej (2019) Uncovering genetic mechanisms of kidney aging through transcriptomics, genomics, and epigenomics. Kidney International, 95 (3). pp. 624-635.

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Raeymaekers, Joost A.M., Chaturvedi, Anurag, Hablützel, Pascal I., Verdonck, Io, Hellemans, Bart, Maes, Gregory, De Meester, Luc, and Volckaert, Filip A.M. (2017) Adaptive and non-adaptive divergence in a common landscape. Nature Communications, 8. 267.

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Sarker, Subir (2023) Complete Mitochondrial Genome Sequence of an Australian Little Crow (Corvus bennetti). Microbiology Resource Announcements, 12 (5). e01367-22.

Sutherland, M., and Sarker, S. (2023) Liver virome of a Little Corella (Cacatua sanguinea) reveals coinfection with a novel parvovirus and two beak and feather disease viruses. Australian Veterinary Journal. (In Press)

Sarker, Subir, and Raidal, Shane R. (2023) A Novel Pathogenic Avipoxvirus Infecting Vulnerable Cook’s Petrel (Pterodroma cookii) in Australia Demonstrates a High Genomic and Evolutionary Proximity with South African Avipoxviruses. Microbiology Spectrum, 11 (2).

Sarker, Subir, Athukorala, Ajani, and Phalen, David N. (2022) Characterization of a Near-Complete Genome Sequence of a Chaphamaparvovirus from an Australian Boobook Owl (Ninox boobook). Microbiology Resource Announcements, 11 (5). e00249-22.

Sarker, Subir (2022) Characterization of a Novel Complete-Genome Sequence of a Galliform Chaphamaparvovirus from a Free-Range Laying Chicken Clinically Diagnosed with Spotty Liver Disease. Microbiology Resource Announcements, 11 (11). e01017-22.

Sarker, Subir, Haque, Md. Hakimul, Nath, Babu Kanti, Talukder, Saranika, Lavers, Jennifer L., and Raidal, Shane R. (2022) Complete Mitochondrial Genome Sequence of a Seabird, Wedge-Tailed Shearwater (Ardenna pacifica). Microbiology Resource Announcements, 11 (2). e01191-21.

Strugnell, Jan M., Mcgregor, Helen, Wilson, Nerida G., Meredith, Karina T., Chown, Steven L., Lau, Sally C.Y., Robinson, Sharon A., and Saunders, Krystyna M. (2022) Emerging biological archives can reveal ecological and climatic change in Antarctica. Global Change Biology, 28 (22). pp. 6483-6508.

Sarker, Subir, Bowden, Timothy R., and Boyle, David B. (2022) Evidence of a Possible Viral Host Switch Event in an Avipoxvirus Isolated from an Endangered Northern Royal Albatross (Diomedea sanfordi). Viruses, 14 (2). 302.

Sarker, Subir, Athukorala, Ajani, and Phalen, David N. (2022) Genome Sequence of a Beak and Feather Disease Virus from an Unusual Novel Host, Australian Boobook Owl (Ninox boobook). Microbiology Resource Announcements, 11 (4). e00172-22.

Soraru, Jacqueline, Jahan, Sadia, Quinlan, Catherine, Simons, Cas, Wardrop, Louise, O’Shea, Rosie, Wood, Alasdair, Mallawaarachchi, Amali, Patel, Chirag, Stark, Zornitza, and Mallett, Andrew John (2022) The HIDDEN Protocol: An Australian Prospective Cohort Study to Determine the Utility of Whole Genome Sequencing in Kidney Failure of Unknown Aetiology. Frontiers in Medicine, 9. 891223.

Sarker, Subir, and Sutherland, Michelle (2022) Molecular characterisation of a novel pathogenic avipoxvirus from an Australian little crow (Corvus bennetti) directly from the clinical sample. Scientific Reports, 12 (1). 15053.

Schmidt, Casey A., Cooke, Ira, Wilson, David T., Miller, David J., Peigneur, Steve, Tytgat, Jan, Field, Matthew, Takjoo, Rozita, Smout, Michael J., Loukas, Alex, and Daly, Norelle L. (2022) Newly Discovered Peptides from the Coral Heliofungia actiniformis Show Structural and Functional Diversity. Journal of Natural Products, 85 (7). pp. 1789-1798.

Sarker, Subir, Isberg, Sally R., Athukorala, Ajani, Mathew, Ravi, Capati, Nolasco, Haque, Md. Hakimul, and Helbig, Karla J. (2021) Characterization of a Complete Genome Sequence of Molluscum Contagiosum Virus from an Adult Woman in Australia. Microbiology Resource Announcements, 10 (1). e00939-20.

Sarker, Subir, Nath, Babu Kanti, Talukder, Saranika, and Raidal, Shane R. (2021) Complete Mitochondrial Genome Sequence of the Magpie-Lark (Grallina cyanoleuca). Microbiology Resource Announcements, 10 (24). e00342.

Sarker, Subir, Hannon, Christabel, Athukorala, Ajani, and Bielefeldt-Ohmann, Helle (2021) Emergence of a novel pathogenic poxvirus infection in the endangered green sea turtle (Chelonia mydas) highlights a key threatening process. Viruses, 13 (2). 219.

Sarker, Subir, Athukorala, Ajani, Nyandowe, Tadiwa, Bowden, Timothy R., and Boyle, David B. (2021) Genomic Characterisation of a Novel Avipoxvirus Isolated from an Endangered Northern Royal Albatross (Diomedea sanfordi). Pathogens, 10 (5). 575.

Sarker, Subir, Athukorala, Ajani, Bowden, Timothy R., and Boyle, David B. (2021) Genomic Characterisation of a Novel Avipoxvirus Isolated from an Endangered Yellow-Eyed Penguin (Megadyptes antipodes). Viruses, 13 (2). 194.

Sarker, Subir, Bowden, Timothy R., and Boyle, David B. (2021) Genomic characterisation of a novel avipoxvirus, magpiepox virus 2, from an Australian magpie (Gymnorhina tibicen terraereginae). Virology, 562. pp. 121-127.

Sweet, Michael, Villela, Helena, Keller-Costa, Tina, Costa, Rodrigo, Romano, Stefano, Bourne, David G., Cárdenas, Anny, Huggett, Megan J., Kerwin, Allison H., Kuek, Felicity, Medina, Monica, Meyer, Julie L., Müller, Moritz, Pollock, F. Joseph, Rappé, Michael S., Sere, Mathieu, Sharp, Koty H., Voolstra, Christian R., Zaccardi, Nathan, Ziegler, Maren, and Peixoto, Raquel (2021) Insights into the cultured bacterial fraction of corals. mSystems, 6 (3). e01249-20.

Sarker, Subir (2021) Molecular and Phylogenetic Characterisation of a Highly Divergent Novel Parvovirus (Psittaciform Chaphamaparvovirus 2) in Australian Neophema Parrots. Pathogens, 10 (12). 1559.

Sarker, Subir, Athukorala, Ajani, and Raidal, Shane R. (2021) Molecular characterisation of a novel pathogenic avipoxvirus from an Australian passerine bird, mudlark (Grallina cyanoleuca). Virology, 554. pp. 66-74.

Sarker, Subir, Athukorala, Ajani, Talukder, Saranika, Haque, Md Hakimul, Helbig, Karla, Lavers, Jennifer L., and Raidal, Shane R. (2021) Resolution of the phylogenetic relationship of the vulnerable flesh-footed shearwater (Ardenna carneipes) seabird using a complete mitochondrial genome. Mitochondrial DNA Part B: Resources, 6 (4). pp. 1507-1511.

Sarker, Subir, Batinovic, Steven, Talukder, Saranika, Das, Shubhagata, Park, Fiona, Petrovski, Steve, Forwood, Jade K., Helbig, Karla J., and Raidal, Shane R. (2020) Molecular characterisation of a novel pathogenic avipoxvirus from the Australian magpie (Gymnorhina tibicen). Virology, 540. pp. 1-16.

Sarker, Subir, Athukorala, Ajani, Talukder, Saranika, and Phalen, David N. (2020) Phylogenetic analyses to uncover the evolutionary relationship of a newly sequenced mitochondrial genome from an Eastern spinebill (Acanthorhynchus tenuirostris). Mitochondrial DNA Part B: Resources, 5 (3). pp. 3252-3256.

Seid, Mengistu Endris (2020) Rational vaccine development for malaria from genomic sequence information. PhD thesis, James Cook University.

Silva, Catarina N.S., Villacorta-Rath, Cecilia, Woodings, Laura N., Murphy, Nicholas P., Green, Bridget S., Hartmann, Klaas, Gardner, Caleb, Bell, James J., and Strugnell, Jan M. (2019) Advancing our understanding of the connectivity, evolution and management of marine lobsters through genetics. Reviews in Fish Biology and Fisheries, 29 (3). pp. 669-687.

Sarker, Subir, Talukder, Saranika, Sutherland, Michelle, Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2019) Characterization of the first mitochondrial genome of a little Corella (Cacatua sanguinea) and its phylogenetic implications. Mitochondrial DNA Part B: Resources, 4 (2). pp. 3792-3794.

Sarker, Subir, Isberg, Sally R., Moran, Jasmin L., De Araujo, Rachel, Elliott, Nikki, Melville, Lorna, Beddoe, Travis, and Helbig, Karla J. (2019) Crocodilepox Virus Evolutionary Genomics Supports Observed Poxvirus Infection Dynamics on Saltwater Crocodile (Crocodylus porosus). Viruses, 11 (12). 1116.

Sutherland, Michelle, Sarker, Subir, and Raidal, Shane R. (2019) Molecular and microscopic characterisation of a novel pathogenic herpesvirus from Indian ringneck parrots (Psittacula krameri). Veterinary Microbiology, 239. 108428.

Simpson, Lalita (2019) Phylogenomic insights into the spatio-temporal evolution of the Asian and Australasian Bulbophyllum (Orchidaceae). PhD thesis, James Cook University.

Sarker, Subir, Das, Shubhagata, Forwood, Jade K., and Raidal, Shane R. (2019) The first complete mitogenome of Australia’s largest raptor, the wedge-tailed eagle (Aquila audax). Mitochondrial DNA Part B: Resources, 4 (1). pp. 434-436.

Sarker, Subir, Sutherland, Michelle, Talukder, Saranika, Das, Shubhagata, Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2019) The first complete mitogenome of Indian ringneck (Psittacula krameri) demonstrates close phylogenetic relationship with Eclectus parrot. Mitochondrial DNA Part B: Resources, 4 (2). pp. 3579-3581.

Sarker, S., Das, S., Helbig, K., Peters, A., and Raidal, S.R. (2018) Genome sequence of an Australian strain of canid alphaherpesvirus 1. Australian Veterinary Journal, 96 (1-2). pp. 24-27.

Sarker, Subir, Isberg, Sally R., Milic, Natalie L., Lock, Peter, and Helbig, Karla J. (2018) Molecular characterization of the first saltwater crocodilepox virus genome sequences from the world's largest living member of the Crocodylia. Scientific Reports, 8 (1). 5623.

Shiel, Brett P., Cooke, Ira R., Hall, Nathan E., Robinson, Nicholas A., and Strugnell, Jan M. (2018) Summer mortality in molluscs: the genetic basis for resilience and susceptibility. In: Breeding Focus 2018. pp. 59-79. From: Breeding Focus 2018: reducing heat stress, 19-20 September 2018, Armidale, NSW, Australia.

Sarker, Subir, Das, Shubhagata, Ghorashi, Seyed A., Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2018) The first complete mitogenome of red-bellied parrot (Poicephalus rufiventris) resolves phylogenetic status within Psittacidae. Mitochondrial DNA Part B: Resources, 3 (1). pp. 195-197.

Sarker, Subir, Das, Shubhagata, Frith, Sarah, Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2017) Complete mitochondrial genome sequence of an Australian little penguin (Eudyptula minor novaehollandia, J.R. Forster, 1781). Mitochondrial DNA Part B: Resources, 2 (2). pp. 428-429.

Sarker, Subir, Das, Shubhagata, Lavers, Jennifer L., Hutton, Ian, Helbig, Karla, Imbery, Jacob, Upton, Chris, and Raidal, Shane R. (2017) Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.). BMC Genomics, 18 (1). 298.

Silva, C.N.S., McFarlane, S.E., Hagen, I.J., Rönnegård, L., Billing, A.M., Kvalnes, T., Kemppainen, P., Rønning, B., Ringsby, T.H., Sæther, B-E., Qvarnström, A., Ellegren, H., Jensen, H., and Husby, A. (2017) Insights into the genetic architecture of morphological traits in two passerine bird species. Heredity, 119. pp. 197-205.

Sarker, Subir, Roberts, Hayley K., Tidd, Naomie, Ault, Shayne, Ladmore, Georgia, Peters, Andrew, Forwood, Jade K., Helbig, Karla, and Raidal, Shane R. (2017) Molecular and microscopic characterization of a novel Eastern grey kangaroopox virus genome directly from a clinical sample. Scientific Reports, 7. 16472.

Sarker, Subir, Helbig, Karla, and Raidal, Shane R. (2017) The first complete mitochondrial genome sequence of an Australian raven (Corvus coronoides). Mitochondrial DNA Part B: Resources, 2 (2). pp. 473-474.

Sarker, Subir, Das, Shubhagata, Forwood, Jade, Helbig, Karla, and Raidal, Shane R. (2016) The complete mitochondrial genome sequence of an Endangered powerful owl (Ninox strenua). Mitochondrial DNA Part B: Resources, 1 (1). pp. 722-723.

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White, Rhys T., Taylor, William, Klukowski, Natalie, Vaughan-Higgins, Rebecca, Williams, Ernest, Petrovski, Steve, Rose, Jayson J.A., and Sarker, Subir (2023) A discovery down under: decoding the draft genome sequence of Pantoea stewartii from Australia's Critically Endangered western ground parrot / kyloring (Pezoporus flaviventris). Microbial Genomics, 9 (9).

White, Rhys T., Jelocnik, Martina, Klukowski, Natalie, Haque, Md Hakimul, and Sarker, Subir (2023) The first genomic insight into Chlamydia psittaci sequence type (ST)24 from a healthy captive psittacine host in Australia demonstrates evolutionary proximity with strains from psittacine, human, and equine hosts. Veterinary Microbiology, 280. 109704.

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