Items where Subject is "31 BIOLOGICAL SCIENCES > 3105 Genetics > 310509 Genomics"
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- 3105 Genetics (369)
- 31 BIOLOGICAL SCIENCES (4090)
A
Alele, Faith O., Otto, John R., Malau-Aduli, Bunmi S., and Malau-Aduli, Aduli E.O. (2022) Next Generation Sequencing of Genotype Variants and Genetic Association between Heat Shock Proteins HSPA1B Single Nucleotide Polymorphism at the g.31829044 Locus and Heat Tolerance: A Pilot Quasi-Experimental Study. Biomolecules, 12 (10). 1465.
Athukorala, Ajani, Phalen, David N., Das, Ashutosh, Helbig, Karla J., Forwood, Jade K., and Sarker, Subir (2021) Genomic Characterisation of a Highly Divergent Siadenovirus (Psittacine Siadenovirus F) from the Critically Endangered Orange-Bellied Parrot (Neophema chrysogaster). Viruses, 13 (9). 1714.
Athukorala, Ajani, Forwood, Jade K., Phalen, David N., and Sarker, Subir (2020) Molecular Characterisation of a Novel and Highly Divergent Passerine Adenovirus 1. Viruses, 12 (9). 1036.
B
Bertola, Lorenzo V., Higgie, Megan, Zenger, Kyall R., and Hoskin, Conrad J. (2023) Conservation genomics reveals fine-scale population structuring and recent declines in the Critically Endangered Australian Kuranda Treefrog. Conservation Genetics, 24. pp. 249-264.
Bragg, Jason G., Potter, Sally, Afonso Silva, Ana C., Hoskin, Conrad J., Bai, Benjamin Y.H., and Moritz, Craig (2018) Phylogenomics of a rapid radiation: the Australian rainbow skinks. BMC Evolutionary Biology, 18. 15.
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Chai, Chuan-Yu, Maran, Sathiya, Thew, Hin-Yee, Tan, Yong-Chiang, Nik Abd Rahman, Nik Mohd Afizan, Cheng, Wan-Hee, Lai, Kok-Song, Loh, Jiun-Yan, and Yap, Wai-Sum (2022) Predicting Deleterious Non-Synonymous Single Nucleotide Polymorphisms (nsSNPs) of HRAS Gene and In Silico Evaluation of Their Structural and Functional Consequences towards Diagnosis and Prognosis of Cancer. Biology, 11 (11). 1604.
Calcino, Andrew D., Kenny, Nathan J., and Gerdol, Marco (2021) Single individual structural variant detection uncovers widespread hemizygosity in molluscs. Philosophical Transactions of the Royal Society B: Biological Sciences, 376 (1825). 20200153.
Chen, Jen-Tsung, and Nargar, Katharina (2020) Editorial: Orchid genomics and developmental biology. Frontiers in Plant Science, 11. 1013.
Cooke, Ira, Ying, Hua, Forêt, Sylvain, Bongaerts, Pim, Strugnell, Jan M., Simakov, Oleg, Zhang, Jia, Field, Matt A., Rodriguez-Lanetty, Mauricio, Bell, Sara C., Bourne, David G., van Oppen, Madeleine J.H., Ragan, Mark A., and Miller, David J. (2020) Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts. Science Advances, 6 (48). eabc6318.
Chang, Wendy, Renaut, Patricia, and Pretorius, Casper (2020) SMAD4 juvenile polyposis syndrome and hereditary haemorrhagic telangiectasia presenting in a middle-aged man as a large fungating gastric mass, polyposis in both upper and lower GI tract and iron deficiency anaemia, with no known family history. BMJ Case Reports, 13 (12). e236855.
Cooke, Ira, Mead, Oliver, Whalen, Casey, Boote, Chloe, Moya, Aurelie, Ying, Hua, Robbins, Steven, Strugnell, Jan M., Darling, Aaron, Miller, David, Voolstra, Christian, and Adamska, Maya (2019) Molecular techniques and their limitations shape our view of the holobiont. Zoology, 137. 125695.
Catullo, Renee A., Yeap, Heng L., Lee, Siu F., Bragg, Jason G., Cheesman, Jodie, De Faveri, Stefano, Edwards, Owain, Hee, Alvin K.W., Popa, Angel D., Schiffer, Michele, and Oakeshott, John G. (2019) A genome-wide approach for uncovering evolutionary relationships of Australian Bactrocera species complexes (Diptera: Tephritidae). Invertebrate Systematics, 33 (4). pp. 618-627.
Calcino, Andrew D., de Oliveira, André Luiz, Simakov, Oleg, Schwaha, Thomas, Zieger, Elisabeth, Wollesen, Tim, and Wanninger, Andreas (2019) The quagga mussel genome and the evolution of freshwater tolerance. DNA Research, 26 (5). pp. 411-422.
Capel, K.C.C., Migotto, A.E., Zilberberg, C., Lin, M.F., Forsman, Z., Miller, D.J., and Kitahara, M.V. (2016) Complete mitochondrial genome sequences of Atlantic representatives of the invasive Pacific coral species Tubastraea coccinea and T. tagusensis (Scleractinia, Dendrophylliidae): implications for species identification. Gene, 590 (2). pp. 270-277.
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Da Fonseca, Rute R., Couto, Alvarina, Machado, Andre M., Brejova, Brona, Albertin, Carolin B., Silva, Filipe, Gardner, Paul, Baril, Tobias, Hayward, Alex, Campos, Alexandre, Ribeiro, Ângela M., Barrio-Hernandez, Inigo, Hoving, Henk-Jan, Tafur-Jimenez, Ricardo, Chu, Chong, Frazão, Barbara, Petersen, Bent, Peñaloza, Fernando, Musacchia, Francesco, Alexander, Graham C., Osório, Hugo, Winkelmann, Inger, Simakov, Oleg, Rasmussen, Simon, Rahman, M. Ziaur, Pisani, Davide, Vinther, Jakob, Jarvis, Erich, Zhang, Guojie, Strugnell, Jan M., Castro, L. Filipe C., Fedrigo, Olivier, Patricio, Mateus, Li, Qiye, Rocha, Sara, Antunes, Agostinho, Wu, Yufeng, Ma, Bin, Sanges, Remo, Vinar, Tomas, Blagoev, Blagoy, Sicheritz-Ponten, Thomas, Nielsen, Rasmus, and Gilbert, M Thomas P. (2020) A draft genome sequence of the elusive giant squid, Architeuthis dux. GigaScience, 9 (1). giz152.
Devloo-Delva, Floriaan, Huerlimann, Roger, Chua, Gladys, Matley, Jordan K., Heupel, Michelle R., Simpfendorfer, Colin A., and Maes, Gregory E. (2019) How does marker choice affect your diet analysis: comparing genetic markers and digestion levels for diet metabarcoding of tropical-reef piscivores. Marine and Freshwater Research, 70 (1). MF17209. pp. 8-18.
do Prado, Fernanda Dotti, Vera, Manuel, Hermida, Miguel, Bouza, Carmen, Pardo, Belén G., Vilas, Román, Blanco, Andrés, Fernández, Carlos, Maroso, Francesco, Maes, Gregory E., Turan, Cemal, Volckaert, Filip A.M., Taggart, John B., Carr, Adrian, Ogden, Rob, Nielsen, Einar Eg, Aquatrace, Consortium, and Martínez, Paulino (2018) Parallel evolution and adaptation to environmental factors in a marine flatfish: implications for fisheries and aquaculture management of the turbot (Scophthalmus maximus). Evolutionary Applications, 11 (8). pp. 1322-1341.
Das, Shubhagata, Rakib, Tofazzal Md, Islam, Md Shafiqul, Rahaman, Md Mustafizur, Das, Tridip, Hossain, Mohammad Alamgir, Sarker, Subir, and Raidal, Shane R. (2018) The first complete mitogenome of Indian star tortoise (Geochelone elegans). Mitochondrial DNA Part B: Resources, 3 (2). pp. 1112-1113.
Direk, Nese, Williams, Stephanie, Smith, Jennifer A., Ripke, Stephan, Air, Tracy, Amare, Azmeraw T., Amin, Najaf, Baune, Bernhard T., Bennett, David A., Blackwood, Douglas H.R., Boomsma, Dorret, Breen, Gerome, Buttenschøn, Henriette N., Byrne, Enda M., Børglum, Anders D., Castelao, Enrique, Cichon, Sven, Clarke, Toni-Kim, Cornelis, Marilyn C., Dannlowski, Udo, De Jager, Philip L., Demirkan, Ayse, Domenici, Enrico, van Duijn, Cornelia M., Dunn, Erin C., Eriksson, Johan G., Esko, Tonu, Faul, Jessica D., Ferrucci, Luigi, Fornage, Myriam, de Geus, Eco, Gill, Michael, Gordon, Scott D., Grabe, Hans Jörgen, van Grootheest, Gerard, Hamilton, Steven P., Hartman, Catharina A., Heath, Andrew C., Hek, Karin, Hofman, Albert, Homuth, Georg, Horn, Carsten, Hottenga, Jouke Jan, Kardia, Sharon L.R., Kloiber, Stefan, Koenen, Karestan, Kutalik, Zoltán, Ladwig, Karl-Heinz, Lahti, Jari, Levinson, Douglas F., Lewis, Cathryn M., Lewis, Glyn, Li, Qingqin S., Llewellyn, David J., Lucae, Susanne, Lunetta, Kathryn L., MacIntyre, Donald J., Madden, Pamela, Martin, Nicholas G., McIntosh, Andrew M., Metspalu, Andres, Milaneschi, Yuri, Montgomery, Grant W., Mors, Oles, Mosley, Thomas H., Murabito, Joanne M., Müller-Myhsok, Bertram, Nöthen, Markus M., Nyholt, Dale R., O'Donovan, Michael C., Penninx, Brenda W., Pergadia, Michele L., Perlis, Roy, Potash, James B., Preisig, Martin, Purcell, Shaun M., Quiroz, Jorge A., Räikkönen, Katri, Rice, John P., Rietschel, Marcella, Rivera, Margarita, Schulze, Thomas G., Shi, Jianxin, Shyn, Stanley, Sinnamon, Grant C., Smit, Johannes H., Smoller, Jordan W., Snieder, Harold, Tanaka, Toshiko, Tansey, Katherine E., Teumer, Alexander, Uher, Rudolf, Umbricht, Daniel, Van der Auwera, Sandra, Ware, Erin, Weir, David R., Weissman, Myrna M., Willemsen, Gonneke, Yang, Jingyun, Zhao, Wei, Tiemeier, Henning, and Sullivan, Patrick F. (2017) An analysis of two genome-wide association meta-analyses identifies a new locus for broad depression phenotype. Biological Psychiatry, 82 (5). pp. 322-329.
Das, Shubhagata, Sarker, Subir, Peters, Andrew, Ghorashi, Seyed A., Phalen, David, Forwood, Jade K., and Raidal, Shane R. (2016) Evolution of circoviruses in lorikeets lags behind its hosts. Molecular Phylogenetics and Evolution, 100. pp. 281-291.
Das, Shubhagata, Subir, Sarker, Forwood, Jade K., Ghorashi, Seyed A., and Raidal, Shane R. (2016) Whole-Genome Sequence of a Beak and Feather Disease Virus Isolate from a Fledgling Red-Capped Parrot (Purpureicephalus spurius). Genome Announcements, 4 (5). e01108-16.
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Fuller, Zachary L., Mocellin, Veronique J. L., Morris, Luke A., Cantin, Neal, Shepherd, Jihanne, Sarre, Luke, Peng, Julie, Liao, Yi, Pickrell, Joseph, Andolfatto, Peter, Matz, Mikhail, Bay, Line K., and Przeworski, Molly (2020) Population genetics of the coral Acropora millepora: toward genomic prediction of bleaching. Science, 369 (6501). eaba4674.
Field, Matt A., Rosen, Benjamin D., Dudchenko, Olga, Chan, Eva K. F., Minoche, Andre E., Edwards, Richard J., Barton, Kirston, Lyons, Ruth J., Tuipulotu, Daniel Enosi, Hayes, Vanessa M., Omer, Arina D., Colaric, Zane, Keilwagen, Jens, Skvortsova, Ksenia, Bogdanovic, Ozren, Smith, Martin A., Aiden, Erez Lieberman, Smith, Timothy P. L., Zammit, Robert A., and Ballard, J. William O. (2020) Canfam GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C. GigaScience, 9 (4). pp. 1-12.
Fadaeifard, F., Rabiei, M., and Sharifpour, M.F. (2020) Genetic characterization of Lactococcus garvieae isolated from farmed rainbow trout by random amplified polymorphic DNA-PCR in Iran. Journal of the Hellenic Veterinary Medical Society, 71 (1). pp. 2023-2030.
Firth, Cadhla, Blasdell, Kim R., Amos-Ritchie, Rachel, Sendow, Indrawati, Agnihotri, Kalpana, Boyle, David B., Daniels, Peter, Kirkland, Peter, and Walker, Peter J. (2017) Genomic analysis of bluetongue virus episystems in Australia and Indonesia. Veterinary Research, 48. 82.
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Godri Pollitt, Krystal J., Peccia, Jordan, Ko, Albert I., Kaminski, Naftali, Dela Cruz, Charles S., Nebert, Daniel W., Reichardt, Juergen K.V., Thompson, David C., and Vasiliou, Vasilis (2020) COVID-19 vulnerability: the potential impact of genetic susceptibility and airborne transmission. Human Genomics, 14 (1). 17.
Gan, Han Ming, Tan, Mun Hua, Austin, Christopher M., Sherman, Craig D.H., Wong, Yen Ting, Strugnell, Jan, Gervis, Mark, McPherson, Luke, and Miller, Adam D. (2019) Best foot forward: nanopore long reads, hybrid meta-assembly, and haplotig purging optimizes the first genome assembly for the southern hemisphere blacklip abalone (Haliotis rubra). Frontiers in Genetics, 10. 889.
Guernier, Vanina, Allan, Kathryn J., and Goarant, Cyrille (2018) Advances and challenges in barcoding pathogenic and environmental Leptospira. Parasitology, 145 (5). pp. 595-607.
Gruenstaeudl, Michael, Nauheimer, Lars, and Borsch, Thomas (2017) Plastid genome structure and phylogenomics of Nymphaeales: conserved gene order and new insights into relationships. Plant Systematics and Evolution, 303 (9). pp. 1251-1270.
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Herrera, Marcela, Ravasi, Timothy, and Laudet, Vincent (2023) Anemonefishes: A model system for evolutionary genomics. F1000Research, 12. 204.
Hill, Erin, Murphy, Nicholas, Linacre, Adrian, Toop, Simon, and Strugnell, Jan M. (2023) Kinship analysis reveals low dispersal in a hog deer (Axis porcinus) population in Wilsons Promontory National Park, Australia. Wildlife Research, 50 (8-9). pp. 746-756.
Hua, Qiaz Q.H., Thomson, Vicki A., Strugnell, Jan M., Martino, Jasmin C., Gillanders, Bronwyn M., and Doubleday, Zoe A. (2023) Using genomics and morphometrics to monitor data-poor and commercially exploited octopod populations. Marine Biology, 170 (10). 119.
Huaman, Jose L., Pacioni, Carlo, Sarker, Subir, Doyle, Mark, Forsyth, David M., Pople, Anthony, Carvalho, Teresa G., and Helbig, Karla J. (2021) Novel Picornavirus Detected in Wild Deer: Identification, Genomic Characterisation, and Prevalence in Australia. Viruses, 13 (12). 2412.
Huerlimann, R., Cooper, M.K., Edmunds, R.C., Villacorta-Rath, C., Le Port, A., Robson, H.L.A., Strugnell, J.M., Burrows, D., and Jerry, D.R. (2020) Enhancing tropical conservation and ecology research with aquatic environmental DNA methods: an introduction for non-environmental DNA specialists. Animal Conservation, 23 (6). pp. 632-645.
Hillen, J.E.J., Coscia, I., Vandeputte, M., Herten, K., Hellemans, B., Maroso, F., Vergnet, A., Allal, F., Maes, Gregory, and Volckaert, F.A.M. (2017) Estimates of genetic variability and inbreeding in experimentally selected populations of European sea bass. Aquaculture, 479. pp. 742-749.
Huang, Bixing, Firth, Cadhla, Watterson, Daniel, Allcock, Richard, Colmant, Agathe M.G., Hobson-Peters, Jody, Kirkland, Peter, Hewitson, Glen, Mcmahon, Jamie, Hall-Mendelin, Sonja, van den Hurk, Andrew F., and Warrilow, David (2016) Genetic characterization of archived bunyaviruses and their potential for emergence in Australia. Emerging Infectious Diseases, 22 (5). pp. 833-840.
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Irimia, Ramona E., Montesinos, Daniel, Chaturvedi, Anurag, Sanders, Ian, Hierro, José L., Sotes, Gastón, Cavieres, Lohengrin A., Eren, Özkan, Lortie, Christopher J., French, Kristine, and Brennan, Adrian Christopher (2023) Trait evolution during a rapid global weed invasion despite little genetic differentiation. Evolutionary Applications, 16 (5). pp. 997-1011.
ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium, The (2020) Pan-cancer analysis of whole genomes. Nature, 578. pp. 82-93.
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Justine, Jean Lou, Gastineau, Romain, Gros, Pierre, Gey, Delphine, Ruzzier, Enrico, Charles, Laurent, and Winsor, Leigh (2022) Hammerhead flatworms (Platyhelminthes, Geoplanidae, Bipaliinae): mitochondrial genomes and description of two new species from France, Italy, and Mayotte. PeerJ, 10. e12725.
Jerry, Dean R., Jones, David B., Lillehammer, Marie, Massault, Cecile, Loughnan, Shannon, Cate, Holly S., Harrison, Paul J., Strugnell, Jan M., Zenger, Kyall R., and Robinson, Nicholas A. (2022) Predicted strong genetic gains from the application of genomic selection to improve growth related traits in barramundi (Lates calcarifer). Aquaculture, 549. 737761.
Jayasinghe, Kushani, Wu, You, Stark, Zornitza, Kerr, Peter G., Mallett, Andrew J., Gaff, Clara, Martyn, Melissa, Goranitis, Ilias, and Quinlan, Catherine (2021) Cost-effectiveness of targeted exome analysis as a diagnostic test in glomerular diseases. Kidney International Reports, 6 (11). pp. 2850-2861.
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Khalilisamani, Nima, Thomson, Peter, Raadsma, Herman Willem, and Khatkar, Mehar Singh (2022) Estimating heritability using family-pooled phenotypic and genotypic data: a simulation study applied to aquaculture. Heredity, 128 (3). pp. 178-186.
Kosch, Tiffany A., Waddle, Anthony W., Cooper, Caitlin A., Zenger, Kyall R., Garrick, Dorian J., Berger, Lee, and Skerratt, Lee F. (2022) Genetic approaches for increasing fitness in endangered species. Trends in Ecology & Evolution, 37 (4). pp. 332-345.
Kong, Amanda Shen-Yee, Lai, Kok-Song, Lim, Swee-Hua Erin, Sivalingam, Sivakumar, Loh, Jiun-Yan, and Maran, Sathiya (2022) miRNA in Ischemic Heart Disease and Its Potential as Biomarkers: A Comprehensive Review. International Journal of Molecular Sciences, 23 (16). 9001.
Kjeldsen, Shannon Rikke (2020) Addressing koala conservation management needs: applying novel genomic methods and assessing ecological exchangeability and genetic diversity across the species range. PhD thesis, James Cook University.
Kjeldsen, Shannon R., Zenger, Kyall R., Leigh, Kellie, Ellis, William, Tobey, Jenifer, Phalen, David, Melzer, Alistair, FitzGibbon, Sean, and Raadsma, Herman W. (2016) Genome-wide SNP loci reveal novel insights into koala (Phascolarctos cinereus) population variability across its range. Conservation Genetics, 17 (2). pp. 337-353.
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Lin, Ya-Ping, Chen, Hung-Wei, Yeh, Pei-Min, Anand, Shashi S., Lin, Jiunn, Li, Juan, Noble, Thomas, Nair, Ramakrishnan, Schafleitner, Roland, Samsononova, Maria, Bishop-von-Wettberg, Eric, Nuzhdin, Sergey, Ting, Chau-Ti, Lawn, Robert J., and Lee, Cheng-Ruei (2023) Demographic history and distinct selection signatures of two domestication genes in mungbean. Plant Physiology, 193 (2). pp. 1197-1212.
Le, Thanh Hoa, Nguyen, Khue Thi, Pham, Linh Thi Khanh, Doan, Huong Thi Thanh, Roan, Do Thi, Le, Xuyen Thi Kim, Agatsuma, Takeshi, and Blair, David (2023) Mitogenomic and nuclear ribosomal transcription unit datasets support the synonymy of Paragonimus iloktsuenensis and P. ohirai (Paragonimidae: Platyhelminthes). Parasitology Research, 122. pp. 1531-1544.
Liyanage, D.S., Lee, Sukkyoung, Yang, Hyerim, Lim, Chaehyeon, Omeka, W.K.M., Sandamalika, W.M. Gayashani, Udayantha, H.M.V., Kim, Gaeun, Ganeshalingam, Subothini, Jeong, Taehyug, Oh, Seong-Rip, Won, Seung-Hwan, Koh, Hyoung-Bum, Kim, Mun-Kwan, Jones, David B., Massault, Cecile, Jerry, Dean R., and Lee, Jehee (2022) Genome-wide association study of VHSV-resistance trait in Paralichthys olivaceus. Fish and Shellfish Immunology, 124. pp. 391-400.
Lau, Sally Cheuk Ying (2022) Quaternary evolutionary persistence of Southern Ocean benthic taxa. PhD thesis, James Cook University.
Le, Thanh Hoa, Nguyen, Khue Thi, Pham, Linh Thi Khanh, Doan, Huong Thi Thanh, Agatsuma, Takeshi, and Blair, David (2022) The complete mitogenome of the Asian lung fluke Paragonimus skrjabini miyazakii and its implications for the family Paragonimidae (Trematoda: Platyhelminthes). Parasitology, 149 (13). pp. 1709-1719.
Liu, Huanle, Stephens, Timothy G., González-Pech, Raúl A., Beltran, Victor H., Lapeyre, Bruno, Bongaerts, Pim, Cooke, Ira, Aranda, Manuel, Bourne, David G., Forêt, Sylvain, Miller, David J., van Oppen, Madeleine J.H., Voolstra, Christian R., Ragan, Mark A., and Chan, Cheong Xin (2018) Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis. Communications Biology, 1. 95.
Li, You, Yagi, Hisato, Onuoha, Ezenwa Obi, Damerla, Rama Rao, Francis, Richard, Furutani, Yoshiyuki, Tariq, Muhammad, King, Stephen M., Hendricks, Gregory, Cui, Cheng, Saydmohammed, Manush, Lee, Dong Min, Zahid, Maliha, Sami, Iman, Leatherbury, Linda, Pazour, Gregory J., Ware, Stephanie M., Nakanishi, Toshio, Goldmuntz, Elizabeth, Tsang, Michael, and Lo, Cecilia W. (2016) DNAH6 and its interactions with PCD genes in heterotaxy and primary ciliary dyskinesia. PLoS Genetics, 12 (2). e1005821.
Li, Jia, Bian, Chao, Hu, Yinchang, Mu, Xidong, Shen, Xueyan, Ravi, Vydianathan, Kuznetsova, Inna S., Sun, Ying, Xinxin, You, Qui, Ying, Zhang, Xinhui, Yu, Hui, Huang, Yu, Xu, Pao, Gu, Ruobo, Xu, Junmin, Orban, Laszlo, Venkatesh, Byrappa, and Shi, Qiong (2016) A chromosomelevel genome assembly of the Asian arowana, Scleropages formosus. Scientific Data, 3. 160105.
Lu, Xia, Wang, Hongxia, Li, Yan, and Liu, Baozhong (2016) The impact of selection on population genetic structure in the clam Meretrix petechialis revealed by microsatellite markers. Genetica, 144 (1). pp. 1-8.
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Matias, Ambrosio Melvin A., Popovic, Iva, Thia, Joshua A., Cooke, Ira R., Torda, Gergely, Lukoschek, Vimoksalehi, Bay, Line, Kim, Sun, and Riginos, Cynthia (2023) Cryptic diversity and spatial genetic variation in the coral Acropora tenuis and its endosymbionts across the Great Barrier Reef. Evolutionary Applications, 16 (2). pp. 293-310.
Mallett, Andrew J., Knoers, Nine, Sayer, John, and Stark, Zornitza (2021) Clinical versus research genomics in kidney disease. Nature Reviews Nephrology, 17 (9). pp. 570-571.
Mallett, Andrew (2021) Monogenic nephrolithiasis-collision of phenotypes, genotypes, and phenocopies. Kidney International Reports, 6 (11). pp. 2737-2739.
Massault, C., Jones, D.B., Zenger, K., Strugnell, J.M., Barnard, R., and Jerry, D.R. (2021) A SNP parentage assignment panel for the silver lipped pearl oyster (Pinctada maxima). Aquaculture Reports, 20. 100687.
Monteuuis, Geoffray, Wong, Justin J.L., Bailey, Charles G., Schmitz, Ulf, and Rasko, John E.J. (2019) The changing paradigm of intron retention: regulation, ramifications and recipes. Nucleic Acids Research, 47 (22). pp. 11497-11513.
McKnight, Donald T., Huerlimann, Roger, Bower, Deborah S., Schwarzkopf, Lin, Alford, Ross A., and Zenger, Kyall R. (2019) microDecon: a highly accurate read‐subtraction tool for the post‐sequencing removal of contamination in metabarcoding studies. Environmental DNA, 1 (1). pp. 14-25.
Maroso, F., Hillen, J.E.J., Pardo, B.G., Gkagkavouzis, K., Coscia, I., Hermida, M., Franch, R., Hellemans, B., Van Houdt, J., Simionati, B., Taggart, J.B., Nielsen, E.E., Maes, G.E., Ciavaglia, S.A., Webster, L.M., Volckaert, F.A.M., Martínez, P., Bargelloni, Luca, Ogden, R., and AquaTrace Consortium (2018) Performance and precision of double digestion RAD (ddRAD) genotyping in large multiplexed datasets of marine fish species. Marine Genomics, 39. pp. 64-72.
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Nargar, Katharina, and Chen, Jen Tsung (2023) Editorial: Orchid genomics and developmental biology, volume II. Frontiers in Plant Science, 14. 1136350.
Nguyen, Nguyen Hong, and Vu, Nguyen Thanh (2022) Threshold models using Gibbs sampling and machine learning genomic predictions for skin fluke disease recorded under field environment in yellowtail kingfish Seriola lalandi. Aquaculture, 547. 737513.
Nowland, Samantha J., Silva, Catarina N.S., Southgate, Paul C., and Strugnell, Jan M. (2019) Mitochondrial and nuclear genetic analyses of the tropical black-lip rock oyster (Saccostrea echinata) reveals population subdivision and informs sustainable aquaculture development. BMC Genomics, 20. 711.
Naude, Tanian, Pant, Sameer, Tavassoli, Mousa, Sarker, Subir, and Ghorashi, Seyed Ali (2018) The complete mitochondrial genome of Linguatula serrata (tongue worm) isolated from a dog and phylogenetic analysis. Mitochondrial DNA Part B: Resources, 3 (1). pp. 357-358.
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Omeka, W.K.M., Liyanage, D.S., Lee, Sukkyoung, Lim, Chaehyeon, Yang, Hyerim, Sandamalika, W.M.Gayashani, Udayantha, H.M.V., Kim, Gaeun, Ganeshalingam, Subothini, Jeong, Taehyug, Oh, Seong-Rip, Won, Seung-Hwan, Koh, Hyoung-Bum, Kim, Mun-Kwan, Jones, David B., Massault, Cecile, Jerry, Dean R., and Lee, Jehee (2022) Genome-wide association study (GWAS) of growth traits in olive flounder (Paralichthys olivaceus). Aquaculture, 555. 738257.
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Pei, Yingbing, Deng, Zhixiong, Zhang, Xiuping, Blair, David, Hu, Wei, and Yin, Mingbo (2023) Chromosome-scale genome assembly of the freshwater cladoceran crustacean Chydorus sphaericus: A resource for discovery of genes responsive to ecological challenges. Aquatic Toxicology, 260. 106565.
Pazmiño, Diana A., Maes, Gregory E., Green, Madeline E., Simpfendorfer, Colin A., Hoyos-Padilla, E. Mauricio, Duffy, Clinton J.A., Meyer, Carl G., Kerwath, Sven E., Salinas-de-Leon, Pelayo, and van Herwerden, Lynne (2018) Strong trans-Pacific break and local conservation units in the Galapagos shark (Carcharhinus galapagensis) revealed by genome-wide cytonuclear markers. Heredity, 120. pp. 407-421.
Paparini, Andrea, Yang, Rongchang, Chen, Linda, Tong, Kaising, Gibson-Kueh, Susan, Lymbery, Alan, and Ryan, Una M. (2017) Cryptosporidium in fish: alternative sequencing approaches and analyses at multiple loci to resolve mixed infections. Parasitology, 144 (13). pp. 1811-1820.
Pujolar, José Martin, and Maes, Gregory E. (2016) Evolutionary genomics of North Atlantic eels: current status and perspectives. In: Arai, Takaomi, (ed.) Biology and Ecology of Anguillid Eels. CRC Press, Boca Raton, FL, USA, pp. 36-51.
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Rosa, Bruce A., Choi, Young-Jun, McNulty, Samantha N., Jung, Hyeim, Martin, John, Agatsuma, Takeshi, Sugiyama, Hiromu, Le, Thanh Hoa, Doanh, Pham Ngoc, Maleewong, Wanchai, Blair, David, Brindley, Paul J., Fischer, Peter, and Mitreva, Makedonka (2020) Comparative genomics and transcriptomics of 4 Paragonimus species provide insights into lung fluke parasitism and pathogenesis. GigaScience, 9 (7). giaa073.
Rincon-Sandoval, Melissa, Duarte-Ribeiro, Emanuell, Davis, Aaron M., Santaquiteria, Aintzane, Hughes, Lily C., Baldwin, Carole C., Soto-Torres, Luisangely, Acero P, Arturo, Walker, H.J., Carpenter, Kent E., Sheaves, Marcus, Orti, Guillermo, Arcila, Dahiana, and Betancur-R, Ricardo (2020) Evolutionary determinism and convergence associated with water-column transitions in marine fishes. Proceedings of the National Academy of Sciences of the United States of America, 117 (52). pp. 33396-33403.
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Sarker, Subir, and Raidal, Shane R. (2023) A Novel Pathogenic Avipoxvirus Infecting Vulnerable Cook’s Petrel (Pterodroma cookii) in Australia Demonstrates a High Genomic and Evolutionary Proximity with South African Avipoxviruses. Microbiology Spectrum, 11 (2).
Sarker, Subir, Athukorala, Ajani, and Phalen, David N. (2022) Characterization of a Near-Complete Genome Sequence of a Chaphamaparvovirus from an Australian Boobook Owl (Ninox boobook). Microbiology Resource Announcements, 11 (5). e00249-22.
Sarker, Subir (2022) Characterization of a Novel Complete-Genome Sequence of a Galliform Chaphamaparvovirus from a Free-Range Laying Chicken Clinically Diagnosed with Spotty Liver Disease. Microbiology Resource Announcements, 11 (11). e01017-22.
Sarker, Subir, Haque, Md. Hakimul, Nath, Babu Kanti, Talukder, Saranika, Lavers, Jennifer L., and Raidal, Shane R. (2022) Complete Mitochondrial Genome Sequence of a Seabird, Wedge-Tailed Shearwater (Ardenna pacifica). Microbiology Resource Announcements, 11 (2). e01191-21.
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Sarker, Subir, Bowden, Timothy R., and Boyle, David B. (2022) Evidence of a Possible Viral Host Switch Event in an Avipoxvirus Isolated from an Endangered Northern Royal Albatross (Diomedea sanfordi). Viruses, 14 (2). 302.
Sarker, Subir, Athukorala, Ajani, and Phalen, David N. (2022) Genome Sequence of a Beak and Feather Disease Virus from an Unusual Novel Host, Australian Boobook Owl (Ninox boobook). Microbiology Resource Announcements, 11 (4). e00172-22.
Soraru, Jacqueline, Jahan, Sadia, Quinlan, Catherine, Simons, Cas, Wardrop, Louise, O’Shea, Rosie, Wood, Alasdair, Mallawaarachchi, Amali, Patel, Chirag, Stark, Zornitza, and Mallett, Andrew John (2022) The HIDDEN Protocol: An Australian Prospective Cohort Study to Determine the Utility of Whole Genome Sequencing in Kidney Failure of Unknown Aetiology. Frontiers in Medicine, 9. 891223.
Sarker, Subir, and Sutherland, Michelle (2022) Molecular characterisation of a novel pathogenic avipoxvirus from an Australian little crow (Corvus bennetti) directly from the clinical sample. Scientific Reports, 12 (1). 15053.
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Sarker, Subir, Isberg, Sally R., Athukorala, Ajani, Mathew, Ravi, Capati, Nolasco, Haque, Md. Hakimul, and Helbig, Karla J. (2021) Characterization of a Complete Genome Sequence of Molluscum Contagiosum Virus from an Adult Woman in Australia. Microbiology Resource Announcements, 10 (1). e00939-20.
Sarker, Subir, Nath, Babu Kanti, Talukder, Saranika, and Raidal, Shane R. (2021) Complete Mitochondrial Genome Sequence of the Magpie-Lark (Grallina cyanoleuca). Microbiology Resource Announcements, 10 (24). e00342.
Sarker, Subir, Hannon, Christabel, Athukorala, Ajani, and Bielefeldt-Ohmann, Helle (2021) Emergence of a novel pathogenic poxvirus infection in the endangered green sea turtle (Chelonia mydas) highlights a key threatening process. Viruses, 13 (2). 219.
Sarker, Subir, Athukorala, Ajani, Nyandowe, Tadiwa, Bowden, Timothy R., and Boyle, David B. (2021) Genomic Characterisation of a Novel Avipoxvirus Isolated from an Endangered Northern Royal Albatross (Diomedea sanfordi). Pathogens, 10 (5). 575.
Sarker, Subir, Athukorala, Ajani, Bowden, Timothy R., and Boyle, David B. (2021) Genomic Characterisation of a Novel Avipoxvirus Isolated from an Endangered Yellow-Eyed Penguin (Megadyptes antipodes). Viruses, 13 (2). 194.
Sarker, Subir, Bowden, Timothy R., and Boyle, David B. (2021) Genomic characterisation of a novel avipoxvirus, magpiepox virus 2, from an Australian magpie (Gymnorhina tibicen terraereginae). Virology, 562. pp. 121-127.
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Sarker, Subir, Athukorala, Ajani, Talukder, Saranika, and Phalen, David N. (2020) Phylogenetic analyses to uncover the evolutionary relationship of a newly sequenced mitochondrial genome from an Eastern spinebill (Acanthorhynchus tenuirostris). Mitochondrial DNA Part B: Resources, 5 (3). pp. 3252-3256.
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