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Yeoh, Suat Hui, Ho, Simon Y.W., Thornhill, Andrew H., and Foley, William J. (2013) Regional population expansion in Eucalyptus globulus. Molecular Phylogenetics and Evolution, 68 (3). pp. 498-501.

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Miller, T.L., and Adlard, R.D. (2013) Unicapsula species (Myxosporea: Trilosporidae) of Australian marine fishes, including the description of Unicapsula andersenae n. sp. in five teleost families off Queensland, Australia. Parasitology Research, 112 (8). pp. 2945-2957.

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Givnish, Thomas J., Barfuss, Michael H.J., Van Ee, Benjamin, Riina, Ricarda, Schulte, Katharina, Horres, Ralf, Gonsiska, Philip A., Jabaily, Rachel S., Crayn, Darren M., Smith, J. Andrew C., Winter, Klaus, Brown, Gregory K., Evans, Timothy M., Holst, Bruce K., Luther, Harry, Till, Walter, Zizka, Georg, Berry, Paul E., and Sytsma, Kenneth J. (2011) Phylogeny, adaptive radiation, and historical biogeography in Bromeliaceae: insights from an eight-locus plastid phylogeny. American Journal of Botany, 98 (5). pp. 872-895.

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Janiszewska, Katarzyna, Stolarski, Jarosław, Benzerara, Karim, Meibom, Anders, Mazur, Maciej, Kitahara, Marcelo V., and Cairns, Stephen D. (2011) A unique skeletal microstructure of the deep-sea micrabaciid scleractinian corals. Journal of Morphology, 272 (2). pp. 191-203.

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Forêt, Sylvain, Seneca, François, De Jong, Danielle, Bieller, Annette, Hemmrich, Georg, Augustin, Rene, Hayward, David C., Ball, Eldon E., Bosch, Thomas C.G., Agata, Kiyokazu, Hassel, Monika, and Miller, David J. (2011) Phylogenomics reveals an anomalous distribution of USP genes in metazoans. Molecular Biology and Evolution, 28 (1). pp. 153-161.

Wang, Jie, Niu, Cuijuan, Huang, Chenxi, Rummer, Jodie L., and Xie, Zhigang (2011) Compensatory growth in juvenile freshwater turtles, Chinemys reevesii, following feed deprivation. Journal of the World Aquaculture Society, 42 (1). pp. 82-89.

Thaenkham, Urusa, Nawa, Yukifumi, Blair, David, and Pakdee, Wallop (2011) Confirmation of the paraphyletic relationship between families Opisthorchiidae and Heterophyidae using small and large subunit ribosomal DNA sequences. Parasitology International, 60 (4). pp. 521-523.

Melville, J., Ritchie, E.G., Chapple, S.N.J., Glor, R.E., and Schulte II, J.A. (2011) Evolutionary origins and diversification of dragon lizards in Australia's tropical savannas. Molecular Phylogenetics and Evolution, 58 (2). pp. 257-270.

Rummer, Jodie L., and Brauner, Colin J. (2011) Plasma-accessible carbonic anhydrase at the tissue of a teleost fish may greatly enhance oxygen delivery: in vitro evidence in rainbow trout, Oncorhynchus mykiss. Journal of Experimental Biology, 214. pp. 2319-2328.

Garland, Stephen, James, Timothy Y. , Blair, David, Berger, Lee, and Skerratt, Lee F. (2011) Polymorphic repetitive loci of the amphibian pathogen Batrachochytrium dendrobatidis. Diseases of Aquatic Organisms, 97 (1). pp. 1-9.

Strugnell, J.M., Cherel, Y., Cooke, I.R., Gleadall, I.G., Hochberg, F.G, Ibáñez, I.G., Jorgensen, E., Laptikhovsky, V.V., Linse, K., Norman, M., Vecchione, M., Voight, J.R., and Allcock, A.L. (2011) The Southern Ocean: source and sink? Deep-Sea Research Part II: topical studies in oceanography, 58 (1-2). pp. 196-204.

Le, T.H., Sato, Y., De , N., Nga, N., Nhung, N., Vu, T.T., Sithithaworn, P., McManus, D.P., Agatsuma, T., and Blair, D. (2011) Updated phylogenetic scheme based on the complete mitochondrial protein-coding sequence for common parasitic flatworms. Tropical Medicine and International Health, 16 (S1). 1.3-180. p. 222.

Allcock, A. Louise, Cooke, Ira R., and Strugnell, Jan M. (2011) What can the mitochondrial genome reveal about higher-level phylogeny of the molluscan class Cephalopoda? Zoological Journal of the Linnean Society, 161 (3). pp. 573-586.

Rummer, Jodie L. (2010) Is it cheaper to "grow up" fast? Journal of Experimental Biology, 213 (23). iv-iv.

Harrington, Mark G., and Gadek, Paul A. (2010) Phylogenetics of Hopbushes and Pepperflowers (Dodonaea, Diplopeltis – Sapindaceae) based on nuclear ribosomal ITS and partial ETS sequences incorporating secondary structure models. Australian Systematic Botany, 23 (6). pp. 431-442.

Rummer, Jodie L. (2010) How woolly mammoth blood cheated the cold. Journal of Experimental Biology, 213 (15). v-v.

Kitahara, Marcelo V., Cairns, Stephen D., Stolarski, Jaroslaw, Blair, David, and Miller, David J. (2010) A comprehensive phylogenetic analysis of the Scleractinia (Cnidaria, Anthozoa) based on mitochondrial CO1 sequence data. PLoS ONE, 5 (7). e11490. pp. 1-9.

Karns, Daryl R., Lukoschek, Vimoksalehi, Osterhage, Jennifer, Murphy, John C., and Voris, Harold K. (2010) Phylogeny and biogeography of the Enhydris clade (Serpentes: Homalopsidae). Zootaxa, 2452. pp. 18-30.

Rummer, Jodie L. (2010) Ion regulation drives gill development. Journal of Experimental Biology, 213 (9). iv-iv.

Rummer, Jodie L., Roshan-Moniri , Mani, Balfry, Shannon K., and Brauner, Colin J. (2010) Use it or lose it? Sablefish, Anoplopoma fimbria, a species representing a fifth teleostean group where the βNHE associated with the red blood cell adrenergic stress response has been secondarily lost. Journal of Experimental Biology, 213 (9). pp. 1503-1512.

Rummer, Jodie L. (2010) Brrrown adipose tissue: special fat for cold critters. Journal of Experimental Biology, 213 (4). vi-vi.

Clark, Timothy Darren, Rummer, J.L., Sepulveda, C.A., Farrell, A.P., and Brauner, C.J. (2010) Reduced and reversed temperature dependence of blood oxygenation in an ectothermic scombrid fish: implications for the evolution of regional heterothermy? Journal of Comparative Physiology B: Biochemical Systemic and Environmental Physiology, 180. pp. 73-82.

Rummer, Jodie L. (2009) Komodo dragon's "pearly whites" pack a 1-2-3 deadly punch. Journal of Experimental Biology, 212 (21). iv-iv.

Rummer, Jodie L. (2009) The real taste of victory. Journal of Experimental Biology, 212 (15). iv-iv.

Goodman, B.A. (2009) Nowhere to run: the role of habitat openness and refuge use in defining patterns of morphological and performance evolution in tropical lizards. Journal of Evolutionary Biology, 22 (7). pp. 1535-1544.

Hoskin, C.J., James, S., and Grigg, G.C. (2009) Ecology and taxonomy-driven deviations in the frog call-body size relationship across the diverse Australian frog fauna. Journal of Zoology, 278 (1). pp. 36-41.

Rummer, Jodie L. (2009) A little stress for a fetus goes a long way. Journal of Experimental Biology, 212 (4). v-v.

Van de Putte, Anton Pieter, Van Houdt, J.K.J., Maes, G.E., Janko, K., Koubbi, P., Rock, J., and Volckaert, F.A.M. (2009) Species identification in the trematomid family using nuclear genetic markers. Polar Biology, 32 (12). pp. 1731-1741.

Strugnell, Jan M., Rogers, Alex D., Prodöhl, Paulo A., Collins, Martin A., and Allcock, A. Louise (2008) The thermohaline expressway: the Southern Ocean as a centre of origin for deep-sea octopuses. Cladistics, 24 (6). pp. 853-860.

Niu, C.J., Rummer, J.L., Brauner, C.J., and Schulte, P.M. (2008) Heat shock protein (Hsp70) induced by a mild heat shock slightly moderates plasma osmolarity increases upon salinity transfer in rainbow trout (Oncorhynchus mykiss). Comparative Biochemistry and Physiology Part C: toxicology & pharmacology, 148 (4). pp. 437-444.

Harold, Antony S., Winterbottom, Richard, Munday, Philip L., and Chapman, Robert W. (2008) Phylogenetic relationships of Indo-Pacific coral gobies of the genus Gobiodon (Teleostei: Gobiidae) based on morphological and molecular data. Bulletin of Marine Science, 82 (1). pp. 119-136.

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Butcher, Ryonen, Byrne, Margaret, and Crayn, Darren M. (2007) Evidence for convergent evolution among phylogenetically distant rare species of Tetratheca (Elaeocarpaceae, formerly Tremandraceae) from Western Australia. Australian Systematic Botany, 20 (2). pp. 126-138.

Margulies, Elliot H., Cooper, Gregory M., Asimenos, George, Thomas, Daryl J., Dewey, Colin N., Siepel, Adam, Birney, Ewan, Keefe, Damian, Schwartz, Ariel S., Hou, Minmei, Taylor, James, Nikolaev, Sergey, Montoya-Burgos, Juan I., Löytynoja, Ari, Whelan, Simon, Pardi, Fabio, Massingham, Tim, Brown, James B., Bickel, Peter, Holmes, Ian, Mullikin, James C., Ureta-Vidal, Abel, Paten, Benedict, Stone, Eric A., Rosenbloom, Kate R., Kent, W. James, Bouffard, G.G., Guan, X., Hansen, N.F., Idol, J.R., Maduro, V.V.B., Maskeri, B., McDowell, J.C., Park, M., Thomas, P.J., Young, A.C., Blakesley, R.W., Muzny, D.M., Sodergren, E., Wheeler, D.A., Worley, K.C., Jiang, H., Weinstock, G.M., Gibbs, R.A., Graves, T., Fulton, R., Mardis, E.R., Wilson, R.K., Clamp, M., Cuff, J., Gnerre, S., Jaffe, D.B., Chang, J.L., Lindblad-Toh, K., Lander, E.S., Hinrichs, A., Trumbower, H., Clawson, H., Zweig, A., Kuhn, R.M., Barber, G., Harte, R., Karolchik, D., Field, Matt, Moore, R.A., Matthewson, C.A., Schein, J.E., Marra, M.A., Antonarakis, Stylianos E., Batzoglou, Serafim, Goldman, Nick, Hardison, Ross, Haussler, David, Miller, Webb, Pachter, Lior, Green, Eric D., and Sidow, Arend (2007) Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Research, 17 (6). pp. 760-774.

Crayn, Darren M., Rossetto, Maurizio, and Maynard, David J. (2006) Molecular phylogeny and dating reveals an Oligo-Miocene radiation of dry-adapted shrubs (Tremandraceae) from rainforest tree progenitors (Elaeocarpaceae) in Australia. American Journal of Botany, 93 (9). pp. 1328-1342.

Caldwell, Susan, Rummer, Jodie L., and Brauner, Colin J. (2006) Blood sampling techniques and storage duration: Effects on the presence and magnitude of the red blood cell β-adrenergic response in rainbow trout (Oncorhynchus mykiss). Comparative Biochemistry and Physiology-Part A: molecular & integrative physiology, 144 (2). pp. 188-195.

Burns, Emma L., and Crayn, Darren M. (2006) Phylogenetics and evolution of bell frogs (Litoria aurea species-group, Anura: Hylidae) based on mitochondrial ND4 sequences. Molecular Phylogenetics and Evolution, 39 (2). pp. 573-579.

Baker, D., Rummer, J., Sardella, B., and Brauner, C. (2006) Acid-base regulation during exposure to elevated environmental CO₂ in an osmoconformer, the Pacific Hagfish (Eptatretus stoutii). Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, 143 (Suppl 4). S74-S74.

Maes, G.E., Pujolar, J.M., Raeymaekers, J.A.M., Dannewitz, J., and Volckaert, F.A.M. (2006) Microsatellite conservation and Bayesian individual assignment in four Anguilla species. Marine Ecology Progress Series, 319. pp. 251-261.

Rummer, Jodie, and Bennett, Wayne A. (2005) Physiological effects of swim bladder overexpansion and catastrophic decompression on red snapper. Transactions of the American Fisheries Society, 134 (6). pp. 1457-1470.

Rogers, Matthew B., Archibald, John M., Field, Matthew A., Li, Catherine, Striepen, Boris, and Keeling, Patrick J. (2004) Plastid-targeting peptides from the Chlorarachniophyte Bigelowiella natans. Journal of Eukaryotic Microbiology, 51 (5). pp. 529-535.

Richards, Zoe T., and Wallace, Carden (2004) Acropora rongelapensis sp. nov., a new species of Acropora from the Marshall Islands (Scleractinia: Astrocoeniina: Acroporidae). Zootaxa, 590. pp. 1-5.

Walton, S.F., Dougall, A., Pizzutto, S., Holt, D., Taplin, D., Arlian, L.G., Morgan, M., Currie, B.J., and Kemp, D.J. (2004) Genetic epidemiology of Sarcoptes scabiei (Acari: Sarcoptidae) in northern Australia. International Journal for Parasitology, 34 (7). pp. 839-849.

Hoskin, Conrad J. (2004) Australian microhylid frogs (Cophixalus and Austrochaperina): phylogeny, taxonomy, calls, distributions and breeding biology. Australian Journal of Zoology, 52 (3). pp. 237-269.

Hoskin, C.J., Couper, P.J., and Schneider, C.J. (2003) A new species of Phyllurus (Lacertilia: Gekkonidae) and a revised phylogeny and key for the Australian leaf-tailed geckos. Australian Journal of Zoology, 51 (2). pp. 153-164.

Bosch, J., and Boyero, L. (2003) Precopulatory behaviour and the evolutionary relationships of Discoglossidae. Journal of Zoological Systematics and Evolutionary Research, 41 (3). pp. 145-151.

Pérez-Barbería, F.J., and Gordon, I.J. (2001) Relationships between oral morphology and feeding style in the Ungulata: a phylogenetically controlled evaluation. Proceedings of the Royal Society of London Series B, Biological Sciences, 268 (1471). pp. 1023-1032.

Mysterud, Atle, Pérez-Barbería, F. Javier, and Gordon, Iain. J. (2001) The effect of season, sex and feeding style on home range area versus body mass scaling in temperate ruminants. Oecologia, 127 (1). pp. 30-39.

Kokubugata, G., Kondo, K., Wilson, G.W., Randall, L.M., van der Schans, A., and Morris, D.K. (2000) Comparison of karyotype and rDNA-distribution in somatic chromosomes of Bowenia species (Stangeriaceae, Cycadales). Australian Systematic Botany, 13 (1). pp. 15-20.

Pérez-Barbería, F. Javier, and Gordon, Iain J. (1999) The relative roles of phylogeny, body size and feeding style on the activity time of temperate ruminants: a reanalysis. Oecologia, 120 (2). pp. 193-197.

Duke, Norman C., Benzie, John A.H., Goodall, John A., and Ballment, Elizabeth R. (1998) Genetic structure and evolution of species in the mangrove genus Avicennia (Avicenniaceae) in the Indo-West Pacific. Evolution: international journal of organic evolution, 52 (6). pp. 1612-1626.

Crampton, Andrea L., Miller, Catherine, Baxter, Glenn D., and Barker, Stephen C. (1998) Expressed sequenced tags and new genes from the cattle tick, Boophilus microplus. Experimental and Applied Acarology, 22 (3). pp. 177-186.

Van Herwerden, L., Blair, D., and Agatsuma, T. (1998) Intra- and inter-specific variation in nuclear ribosomal internal transcribed spacer 1 of the Schistosoma japonicum species complex. Parasitology, 116 (4). pp. 311-317.

Barton, Diane (1994) Three species of the genus Dolichosaccus Johnston, 1912 (Digenea: Telorchiidae) from the introduced toad Bufo marinus (Amphibia: Bufonidae) in Australia, with the erection of Meditypus n. subg. Systematic Parasitology, 29 (2). pp. 121-131.

Cribb, Thomas H., and Barton, Diane P. (1991) Zeylanurotrema spearei sp.n. (Digenea: Brachylaimidae) from the cane toad, Bufo marinus, in Australia. Zoologica Scripta, 20 (3). pp. 207-213.

Pettigrew, J.D., Jamieson, B.G.M., Robson, S.K., Hall, L.S., McNally, K.I., and Cooper, H.M. (1989) Phylogenetic relations between microbats, megabats and primates (Mammalia: Chiroptera and Primates). Philosophical Transactions of the Royal Society B: Biological Sciences, 325 (1229). pp. 489-559.

Book Chapter

Choat, J.H., Russell, B.C., and Chin, A. (2019) The fish assemblages of the Great Barrier Reef: their diversity and origin. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO, Melbourne, VIC, Australia, pp. 389-406.

Rummer, Jodie L. (2007) Factors affecting catch and release (CAR) mortality in fish: insight into CAR mortality in red snapper and the influence of catastrophic decompression. In: Patterson, William F., Cowan, James H., Fitzhugh, Gary R., and Nieland, David L., (eds.) Red Snapper: ecology and fisheries in the U.S. Gulf of Mexico. Symposium (60). American Fisheries Society, Bethesda, MD, USA, pp. 123-144.

Conference Item

Schlüns, Ellen, Robson, Simon KA, and Crozier, Ross (2009) Metapleural gland evolution in formicine ants (Formicidae: Hymenoptera). In: Australian Entomological Society’s 40th AGM & Scientific Conference / Society of Australian Systematic Biologists / 9th Invertebrate Biodiversity & Conservation Conference. p. 108. From: Australian Entomological Society’s 40th AGM & Scientific Conference / Society of Australian Systematic Biologists / 9th Invertebrate Biodiversity & Conservation Conference, 25-28 SEP 2009. (Unpublished)

Thesis

Lin, Mei-Fang (2016) Corallimorpharian transcriptomes and their use to understand phylogeny and symbiosis in the Hexacorallia. PhD thesis, James Cook University.

Hodge, Jennifer Reneé (2014) Biogeography and the evolution of coral reef fish species. PhD thesis, James Cook University.

Lema, Anaïs Kimberley (2014) Diversity, stability, and uptake of diazotrophic bacterial communities associated with corals of the Great Barrier Reef. PhD thesis, James Cook University.

Huerlimann, Roger Stephan (2014) Microalgal lipid biosynthesis: phylogeny of acetyl-CoA carboxylase and gene expression patterns of key enzymes. PhD thesis, James Cook University.

Ma, Ka Yan (2014) Patterns and processes of diversification in groupers (family: Epinephelidae). PhD thesis, James Cook University.

Davis, Aaron Marshall (2012) Dietary ecology of terapontid grunters (Pisces: Terapontidae) with particular reference to ontogeny and phylogeny. PhD thesis, James Cook University.

Cowman, Peter Francis (2011) Dating the evolutionary origins of coral reef fishes. PhD thesis, James Cook University.

Kerr, Sarah Emily (2011) Divergence of a mammal along a habitat gradient: a study of the coppery brushtail possum, Trichosurus vulpecula johnsonii. PhD thesis, James Cook University.

Schlüns, Ellen Antje (2011) Molecular ecology and phylogenetics in formicine ants. PhD thesis, James Cook University.

Heatwole, Harold (2010) Distribution and geographic variation of sea kraits in the Laticauda colubrina complex (Serpentes, Elapidae, Laticaudinae). PhD thesis, James Cook University.

Harrington, Mark (2008) Phylogeny and evolutionary history of Sapindaceae and Dodonaea. PhD thesis, James Cook University.

Chong, Caroline (2008) A riparian perspective on species ecology and evolution: Melaleuca leucadendra (Myrtaceae). PhD thesis, James Cook University.

Klanten, Selma O. (2003) Molecular phylogeny, temporal patterns of lineage diversification and phylogeography of the surgeonfish genus Naso (Acanthuridae). PhD thesis, James Cook University.

Christidis, Faye (2003) Systematics, phylogeny and ecology of Australian Leptophlebiidae (Ephemeroptera). PhD thesis, James Cook University.

Raffiudin, Rika (2002) Honey bee behavioural evolution and itpr gene structure studies. PhD thesis, James Cook University.

Arango, Claudia Patricia (2002) Morphological and molecular phylogenetic analysis of the sea spiders (Arthropoda, Pycnogonida) and taxonomic study of tropical Australian forms. PhD thesis, James Cook University.

van Herwerden, Lynne (1998) The trematode genera Paragonimus and Schistosoma in East Asia: molecular evolution, phylogeny and biogeography. PhD thesis, James Cook University.

Scott, Bronwen (1996) Systematics, phylogeny and biogeography of the larger camaenid land snails of eastern Queensland rainforests: (Pulmonata: Stylommatophora: Camaenidae). PhD thesis, James Cook University of North Queensland.