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Bromham, Lindell, Hua, Xia, Lanfear, Robert, and Cowman, Peter F. (2015) Exploring the relationships between mutation rates, life history, genome size, environment, and species richness in flowering plants. American Naturalist, 185 (4). pp. 507-524.

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Crayn, Darren M. (2018) Plant systematics and biogeography in the Australasian tropics. Australian Systematic Botany, 31 (5-6). i-iii.

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Crayn, Darren M. (2016) The Australasian Systematic Botany Society 2015 conference - papers and perspectives. Australian Systematic Botany, 29 (3). iii-iv.

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Cowman, Peter F. (2014) Historical factors that have shaped the evolution of tropical reef fishes: a review of phylogenies, biogeography, and remaining questions. Frontiers in Genetics, 5. 394. pp. 1-15.

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Crisp, Michael D., Burrows, Geoffrey E., Cook, Lyn G., Thornhill, Andrew H., and Bowman, David M.J.S. (2011) Flammable biomes dominated by eucalypts originated at the Cretaceous–Palaeogene boundary. Nature Communications, 2. 193. pp. 1-8.

Cowman, Peter Francis (2011) Dating the evolutionary origins of coral reef fishes. PhD thesis, James Cook University.

Clark, Timothy Darren, Rummer, J.L., Sepulveda, C.A., Farrell, A.P., and Brauner, C.J. (2010) Reduced and reversed temperature dependence of blood oxygenation in an ectothermic scombrid fish: implications for the evolution of regional heterothermy? Journal of Comparative Physiology B: Biochemical Systemic and Environmental Physiology, 180. pp. 73-82.

Chong, Caroline (2008) A riparian perspective on species ecology and evolution: Melaleuca leucadendra (Myrtaceae). PhD thesis, James Cook University.

Crayn, Darren M., Rossetto, Maurizio, and Maynard, David J. (2006) Molecular phylogeny and dating reveals an Oligo-Miocene radiation of dry-adapted shrubs (Tremandraceae) from rainforest tree progenitors (Elaeocarpaceae) in Australia. American Journal of Botany, 93 (9). pp. 1328-1342.

Caldwell, Susan, Rummer, Jodie L., and Brauner, Colin J. (2006) Blood sampling techniques and storage duration: Effects on the presence and magnitude of the red blood cell β-adrenergic response in rainbow trout (Oncorhynchus mykiss). Comparative Biochemistry and Physiology-Part A: molecular & integrative physiology, 144 (2). pp. 188-195.

Christidis, Faye (2003) Systematics, phylogeny and ecology of Australian Leptophlebiidae (Ephemeroptera). PhD thesis, James Cook University.

Crampton, Andrea L., Miller, Catherine, Baxter, Glenn D., and Barker, Stephen C. (1998) Expressed sequenced tags and new genes from the cattle tick, Boophilus microplus. Experimental and Applied Acarology, 22 (3). pp. 177-186.

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Dufresnes, Christophe, Borzée, Amaël, Horn, Agnes, Stöck, Matthias, Ostini, Massimo, Sermier, Roberto, Wassef, Josef, Litvinchuck, Spartak N., Kosch, Tiffany A., Waldman, Bruce, Jang, Yikweon, Brelsford, Alan, and Perrin, Nicholas (2015) Sex-chromosome homomorphy in Palearctic tree frogs results from both turnovers and XY recombination. Molecular Biology and Evolution, 32 (9). pp. 2328-2337.

Davis, Aaron M., Unmack, Peter J., Pusey, Bradley J., Pearson, Richard G., and Morgan, David L. (2014) Effects of an adaptive zone shift on morphological and ecological diversification in terapontid fishes. Evolutionary Ecology, 28 (2). pp. 205-227.

Duchene, David, Klanten, Selma O., Munday, Philip L., Herler, Jürgen, and van Herwerden, Lynne (2013) Phylogenetic evidence for recent diversification of obligate coral-dwelling gobies compared with their host corals. Molecular Phylogenetics and Evolution, 69 (1). pp. 123-132.

Devi, K. Rekha, Narain, Kanwar, Mahanta, Jagadish, Nirmolia, Tulika, Blair, David, Saikia, Sidhartha P., and Agatsuma, Takeshi (2013) Presence of three distinct genotypes within the Paragonimus westermani complex in northeastern India. Parasitology, 140 (1). pp. 76-86.

Davis, Aaron Marshall (2012) Dietary ecology of terapontid grunters (Pisces: Terapontidae) with particular reference to ontogeny and phylogeny. PhD thesis, James Cook University.

Duke, Norman C., Benzie, John A.H., Goodall, John A., and Ballment, Elizabeth R. (1998) Genetic structure and evolution of species in the mangrove genus Avicennia (Avicenniaceae) in the Indo-West Pacific. Evolution: international journal of organic evolution, 52 (6). pp. 1612-1626.

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Forêt, Sylvain, Seneca, François, De Jong, Danielle, Bieller, Annette, Hemmrich, Georg, Augustin, Rene, Hayward, David C., Ball, Eldon E., Bosch, Thomas C.G., Agata, Kiyokazu, Hassel, Monika, and Miller, David J. (2011) Phylogenomics reveals an anomalous distribution of USP genes in metazoans. Molecular Biology and Evolution, 28 (1). pp. 153-161.

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Gervais, C., Mourier, J., and Rummer, J.L. (2016) Developing in warm water: irregular colouration and patterns of a neonate elasmobranch. Marine Biodiversity, 46 (4). pp. 773-774.

Gao, Zeqian, Wang, Miao, Blair, David, Zheng, Yadong, and Dou, Yongxi (2014) Phylogenetic analysis of the endoribonuclease Dicer family. PLoS ONE, 9 (4). e95350. pp. 1-7.

Givnish, Thomas J., Barfuss, Michael H.J., Van Ee, Benjamin, Riina, Ricarda, Schulte, Katharina, Horres, Ralf, Gonsiska, Philip A., Jabaily, Rachel S., Crayn, Darren M., Smith, J. Andrew C., Winter, Klaus, Brown, Gregory K., Evans, Timothy M., Holst, Bruce K., Luther, Harry, Till, Walter, Zizka, Georg, Berry, Paul E., and Sytsma, Kenneth J. (2014) Adaptive radiation, correlated and contingent evolution, and net species diversification in Bromeliaceae. Molecular Phylogenetics and Evolution, 71. pp. 55-78.

Gitai, Jailson, Paule, Juraj, Zizka, Georg, Schulte, Katharina, and Benko-Iseppon, Ana Maria (2014) Chromosome numbers and DNA content in Bromeliaceae: additional data and critical review. Botanical Journal of the Linnean Society, 176 (3). pp. 349-368.

Garda, Adrian A., Wiederhecker, Helga C., Gainsbury, Allison M., Costa, Gabriel C., Pyron, Alexander, Calazans Vieira, Gustavo H., Werneck, Fernanda P., and Colli, Guarino R. (2013) Microhabitat variation explains local-scale distribution of terrestrial Amazonian lizards in Rondônia, Western Brazil. Biotropica, 45 (2). pp. 245-252.

Givnish, Thomas J., Barfuss, Michael H.J., Van Ee, Benjamin, Riina, Ricarda, Schulte, Katharina, Horres, Ralf, Gonsiska, Philip A., Jabaily, Rachel S., Crayn, Darren M., Smith, J. Andrew C., Winter, Klaus, Brown, Gregory K., Evans, Timothy M., Holst, Bruce K., Luther, Harry, Till, Walter, Zizka, Georg, Berry, Paul E., and Sytsma, Kenneth J. (2011) Phylogeny, adaptive radiation, and historical biogeography in Bromeliaceae: insights from an eight-locus plastid phylogeny. American Journal of Botany, 98 (5). pp. 872-895.

Garland, Stephen, James, Timothy Y. , Blair, David, Berger, Lee, and Skerratt, Lee F. (2011) Polymorphic repetitive loci of the amphibian pathogen Batrachochytrium dendrobatidis. Diseases of Aquatic Organisms, 97 (1). pp. 1-9.

Goodman, B.A. (2009) Nowhere to run: the role of habitat openness and refuge use in defining patterns of morphological and performance evolution in tropical lizards. Journal of Evolutionary Biology, 22 (7). pp. 1535-1544.

Grasso, Lauretta, Maindonald, John, Rudd, Stephen, Hayward, David C., Saint, Robert, Miller, David J., and Ball, Eldon E. (2008) Microarray analysis identifies candidate genes for key roles in coral development. BMC Genomics, 9. pp. 540-557.

H

Hernandez, A., Gervais, C.R., Rummer, J.L., and Porter, M.E. (2016) Comparing submerged walking and swimming kinematics in epaulette sharks. Integrative and Comparative Biology, 56 (Suppl 1). E301-E301.

Hall, Nathan E., Hanzak, Jan, Allcock, A. Louise, Cooke, Ira R., Ogura, Atsushi, and Strugnell, Jan M. (2016) The complete mitochondrial genome of the pygmy squid, Idiosepius (Cephalopoda: Decapodiformes): the first representative from the family Idiosepiidae. Mitochondrial DNA Part A: DNA mapping, sequencing and analysis, 27 (1). pp. 5-6.

Heller, Sascha, Leme, Elton M.C., Schulte, Katharina, Benko-Iseppon, Ana M., and Zizka, Georg (2015) Elucidating phylogenetic relationships in the Aechmea alliance: AFLP analysis of Portea and the Gravisia complex (Bromeliaceae, Bromelioideae). Systematic Botany, 40 (3). pp. 716-725.

Holzmeyer, Laura, Duretto, Marco, Crayn, Darren, Hörandl, Elvira, Heslewood, Margaret, Jayanthan, Janani, and Appelhans, Marc (2015) Phylogeny of Acronychia (Rutaceae) and first insights into its historical biogeography and the evolution of fruit characters. PLoS ONE, 10 (8). e0136296. pp. 1-22.

Huerlimann, Roger, Zenger, Kyall R., Jerry, Dean R., and Heimann, Kirsten (2015) Phylogenetic analysis of nucleus-encoded acetyl-CoA carboxylases targeted at the cytosol and plastid of algae. PLoS ONE, 10 (7). e0131099. pp. 1-10.

Hua, Xia, Cowman, Peter, Warren, Dan, and Bromham, Lindell (2015) Longevity is linked to mitochondrial mutation rates in rockfish: a test using poisson regression. Molecular Biology and Evolution, 32 (10). pp. 2633-2645.

Harter, T.S., Morrison, P.R., Mandelman, J.W., Rummer, J.L., Farrell, A.P., Brill, R.W., and Brauner, C.J. (2015) Validation of the i-STAT system for the analysis of blood gases and acid-base status in juvenile sandbar shark (Carcharhinus plumbeus). Conservation Physiology, 3 (1). cov002. pp. 1-10.

Hundt, Peter J., Iglésias, Samuel P., Hoey, Andrew S., and Simons, Andrew M. (2014) A multilocus molecular phylogeny of combtooth blennies (Percomorpha: Blennioidei: Blenniidae): multiple invasions of intertidal habitats. Molecular Phylogenetics and Evolution, 70. pp. 47-56.

Hodge, Jennifer Reneé (2014) Biogeography and the evolution of coral reef fish species. PhD thesis, James Cook University.

Huerlimann, Roger Stephan (2014) Microalgal lipid biosynthesis: phylogeny of acetyl-CoA carboxylase and gene expression patterns of key enzymes. PhD thesis, James Cook University.

Hodge, Jennifer R., Read, Charmaine I., Bellwood, David R., and van Herwerden, Lynne (2013) Evolution of sympatric species: a case study of the coral reef fish genus Pomacanthus (Pomacanthidae). Journal of Biogeography, 40 (9). pp. 1676-1687.

Harrington, Mark G., and Gadek, Paul A. (2010) Phylogenetics of Hopbushes and Pepperflowers (Dodonaea, Diplopeltis – Sapindaceae) based on nuclear ribosomal ITS and partial ETS sequences incorporating secondary structure models. Australian Systematic Botany, 23 (6). pp. 431-442.

Heatwole, Harold (2010) Distribution and geographic variation of sea kraits in the Laticauda colubrina complex (Serpentes, Elapidae, Laticaudinae). PhD thesis, James Cook University.

Hoskin, C.J., James, S., and Grigg, G.C. (2009) Ecology and taxonomy-driven deviations in the frog call-body size relationship across the diverse Australian frog fauna. Journal of Zoology, 278 (1). pp. 36-41.

Harold, Antony S., Winterbottom, Richard, Munday, Philip L., and Chapman, Robert W. (2008) Phylogenetic relationships of Indo-Pacific coral gobies of the genus Gobiodon (Teleostei: Gobiidae) based on morphological and molecular data. Bulletin of Marine Science, 82 (1). pp. 119-136.

Harrington, Mark (2008) Phylogeny and evolutionary history of Sapindaceae and Dodonaea. PhD thesis, James Cook University.

Hoskin, Conrad J. (2004) Australian microhylid frogs (Cophixalus and Austrochaperina): phylogeny, taxonomy, calls, distributions and breeding biology. Australian Journal of Zoology, 52 (3). pp. 237-269.

Hoskin, C.J., Couper, P.J., and Schneider, C.J. (2003) A new species of Phyllurus (Lacertilia: Gekkonidae) and a revised phylogeny and key for the Australian leaf-tailed geckos. Australian Journal of Zoology, 51 (2). pp. 153-164.

J

Jersakova, Jana, Travnicek, Pavel, Kubatova, Barbora, Krejcikova, Jana, Urfus, Tomas, Liu, Zhong-Jian, Lamb, Anthony, Ponert, Jan, Schulte, Katharina, Curn, Vladislav, Vrana, Jan, Leitch, Ilia J., and Suda, Jan (2013) Genome size variation in Orchidaceae subfamily Apostasioideae: filling the phylogenetic gap. Botanical Journal of the Linnean Society, 172 (1). pp. 95-105.

Johnson, Karen A., Holland, Barbara R., Heslewood, Margaret M., and Crayn, Darren M. (2012) Supermatrices, supertrees and serendipitous scaffolding: Inferring a well-resolved, genus-level phylogeny of Styphelioideae (Ericaceae) despite missing data. Molecular Phylogenetics and Evolution, 62 (1). pp. 146-158.

Janiszewska, Katarzyna, Stolarski, Jarosław, Benzerara, Karim, Meibom, Anders, Mazur, Maciej, Kitahara, Marcelo V., and Cairns, Stephen D. (2011) A unique skeletal microstructure of the deep-sea micrabaciid scleractinian corals. Journal of Morphology, 272 (2). pp. 191-203.

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Kitahara, Marcelo V., Lin, Mei-Fang, Forêt, Sylvain, Huttley, Gavin, Miller, David J., and Chen, Chaolun Allen (2014) The "naked coral" hypothesis revisited: evidence for and against Scleractinian monophyly. PLoS One, 9 (4). e94774. pp. 1-13.

Kitahara, Marcelo V., Cairns, Stephen D., Stolarski, Jaroslaw, and Miller, David J. (2013) Deltocyathiidae, an early-diverging family of Robust corals (Anthozoa, Scleractinia). Zoologica Scripta, 42 (2). pp. 201-212.

Karan , M., Evans, D.S., Reilly, D., Schulte, K., Wright, C., Innes, D., Holton, T.A., Nikles, D.G., and Dickinson, G.R. (2012) Rapid microsatellite marker development for African mahogany (Khaya senegalensis, Meliaceae) using next-generation sequencing and assessment of its intra-specific genetic diversity. Molecular Ecology Resources, 12 (2). pp. 344-353.

Kitahara, Marcelo V., Stolarski, Jaroslaw, Cairns, Stephen D., Benzoni, Francesca, Stake, Joel L., and Miller, David J. (2012) The first modern solitary Agariciidae (Anthozoa, Scleractinia) revealed by molecular and microstructural analysis. Invertebrate Systematics, 26 (3). pp. 303-315.

Kerr, Alexander M., Baird, Andrew H., and Hughes, Terry P. (2011) Correlated evolution of sex and reproductive mode in corals (Anthozoa: Scleractinia). Proceedings of the Royal Society of London Series B, Biological Sciences, 278 (1702). pp. 75-81.

Kerr, Sarah Emily (2011) Divergence of a mammal along a habitat gradient: a study of the coppery brushtail possum, Trichosurus vulpecula johnsonii. PhD thesis, James Cook University.

Kitahara, Marcelo V., Cairns, Stephen D., Stolarski, Jaroslaw, Blair, David, and Miller, David J. (2010) A comprehensive phylogenetic analysis of the Scleractinia (Cnidaria, Anthozoa) based on mitochondrial CO1 sequence data. PLoS ONE, 5 (7). e11490. pp. 1-9.

Karns, Daryl R., Lukoschek, Vimoksalehi, Osterhage, Jennifer, Murphy, John C., and Voris, Harold K. (2010) Phylogeny and biogeography of the Enhydris clade (Serpentes: Homalopsidae). Zootaxa, 2452. pp. 18-30.

Klanten, Selma O. (2003) Molecular phylogeny, temporal patterns of lineage diversification and phylogeography of the surgeonfish genus Naso (Acanthuridae). PhD thesis, James Cook University.

Kokubugata, G., Kondo, K., Wilson, G.W., Randall, L.M., van der Schans, A., and Morris, D.K. (2000) Comparison of karyotype and rDNA-distribution in somatic chromosomes of Bowenia species (Stangeriaceae, Cycadales). Australian Systematic Botany, 13 (1). pp. 15-20.

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Lin, Mei-Fang (2016) Corallimorpharian transcriptomes and their use to understand phylogeny and symbiosis in the Hexacorallia. PhD thesis, James Cook University.

Laity, Tania, Laffan, Shawn W., González-Orozco, Carlos E., Faith, Daniel P., Rosauer, Dan F., Byrne, Margaret, Miller, Joseph T., Crayn, Darren, Costion, Craig, Moritz, Craig C., and Newport, Karl (2015) Phylodiversity to inform conservation policy: an Australian example. Science of the Total Environment, 534. pp. 131-143.

Louzada, Rafael B., Schulte, Katharina, Wanderley, Maria das Graças L., Silvestro, Daniele, Zizka, Georg, Barfuss, Michael H.J., and Palma-Silva, Clarisse (2014) Molecular phylogeny of the Brazilian endemic genus Orthophytum (Bromelioideae, Bromeliaceae) and its implications on morphological character evolution. Molecular Phylogenetics and Evolution, 77. pp. 54-64.

Lema, Anaïs Kimberley (2014) Diversity, stability, and uptake of diazotrophic bacterial communities associated with corals of the Great Barrier Reef. PhD thesis, James Cook University.

Lin, Mei-Fang, Kitahara, Marcelo V., Tachikawa, Hiroyuki, Keshavmurthy, Shashank, and Chen, Chaolun Allen (2012) A new shallow-water species, Polycyathus chaishanensis sp nov (Scleractinia: Caryophylliidae), from Chaishan, Kaohsiung, Taiwan. Zoological Studies, 51 (2). pp. 213-221.

Le, T.H., Sato, Y., De , N., Nga, N., Nhung, N., Vu, T.T., Sithithaworn, P., McManus, D.P., Agatsuma, T., and Blair, D. (2011) Updated phylogenetic scheme based on the complete mitochondrial protein-coding sequence for common parasitic flatworms. Tropical Medicine and International Health, 16 (S1). 1.3-180. p. 222.

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Murray, Shauna, Momigliano, Paolo, Heimann, Kirsten, and Blair, David (2014) Molecular phylogenetics and morphology of Gambierdiscus yasumotoi from tropical eastern Australia. Harmful Algae, 39. pp. 242-252.

Ma, Ka Yan (2014) Patterns and processes of diversification in groupers (family: Epinephelidae). PhD thesis, James Cook University.

Mishler, Brent D., Knerr, Nunzio, González-orozco, Carlos E., Thornhill, Andrew H., Laffan, Shawn W., and Miller, Joseph T. (2014) Phylogenetic measures of biodiversity and neo- and paleo-endemism in Australian Acacia. Nature Communications, 5. 4473. pp. 1-10.

Miller, T.L., and Adlard, R.D. (2013) Unicapsula species (Myxosporea: Trilosporidae) of Australian marine fishes, including the description of Unicapsula andersenae n. sp. in five teleost families off Queensland, Australia. Parasitology Research, 112 (8). pp. 2945-2957.

Melville, J., Ritchie, E.G., Chapple, S.N.J., Glor, R.E., and Schulte II, J.A. (2011) Evolutionary origins and diversification of dragon lizards in Australia's tropical savannas. Molecular Phylogenetics and Evolution, 58 (2). pp. 257-270.

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Maes, G.E., Pujolar, J.M., Raeymaekers, J.A.M., Dannewitz, J., and Volckaert, F.A.M. (2006) Microsatellite conservation and Bayesian individual assignment in four Anguilla species. Marine Ecology Progress Series, 319. pp. 251-261.

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Nagalingum, Nathalie S., Knerr, Nunzio, Laffan, Shawn W., González-Orozco, Carlos E., Thornhill, Andrew H., Miller, Joseph T., and Mishler, Brent D. (2015) Continental scale patterns and predictors of fern richness and phylogenetic diversity. Frontiers in Genetics, 6. 132. pp. 1-14.

Niu, C.J., Rummer, J.L., Brauner, C.J., and Schulte, P.M. (2008) Heat shock protein (Hsp70) induced by a mild heat shock slightly moderates plasma osmolarity increases upon salinity transfer in rainbow trout (Oncorhynchus mykiss). Comparative Biochemistry and Physiology Part C: toxicology & pharmacology, 148 (4). pp. 437-444.

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Oza, Anuja U., Lovett, Katharine E., Williams, Stephen E., and Moritz, Craig (2012) Recent speciation and limited phylogeographic structure in Mixophyes frogs from the Australian Wet Tropics. Molecular Phylogenetics and Evolution, 62 (1). pp. 407-413.

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Pike, David A., Andrews, Robin M., and Du, Wei-Guo (2012) Eggshell morphology and gekkotan life-history evolution. Evolutionary Ecology, 26 (4). pp. 847-861.

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