Bertola, Lorenzo V., Higgie, Megan, Zenger, Kyall R., and Hoskin, Conrad J. (2023) Conservation genomics reveals fine-scale population structuring and recent declines in the Critically Endangered Australian Kuranda Treefrog. Conservation Genetics, 24. pp. 249-264.

Vu, Nga T.T., Jerry, Dean R., Edmunds, Richard C., Jones, David B., and Zenger, Kyall R. (2023) Development of a global SNP resource for diversity, provenance, and parentage analyses on the Indo-Pacific giant black tiger shrimp (Penaeus monodon). Aquaculture, 563 (1). 738890.

Whitelaw, Brooke, Finn, Julian K., Zenger, Kyall R., Cooke, Ira R., Morse, Peter, and Strugnell, Jan M. (2023) SNP data reveals the complex and diverse evolutionary history of the blue-ringed octopus genus (Octopodidae: Hapalochlaena) in the Asia-Pacific. Molecular Phylogenetics and Evolution, 186. 107827.

Bertola, Lorenzo V., Hoskin, Conrad J., Jones, David B., Zenger, Kyall R., McKnight, Donald T., and Higgie, Megan (2023) The first linkage map for Australo-Papuan Treefrogs (family: Pelodryadidae) reveals the sex-determination system of the Green-eyed Treefrog (Litoria serrata). Heredity, 131. pp. 263-272.

Massault, Cecile, Jeffrey, Cara, Jones, David B., Barnard, Roger, Strugnell, Jan M., Zenger, Kyall R., and Jerry, Dean R. (2022) Non-invasive DNA collection for parentage analysis for bivalves: A case study from the silver-lipped pearl oyster (Pinctada maxima). Aquaculture, 552. 738036.

Gurdek-Bas, Rodrigo, Benthuysen, Jessica A., Harrison, Hugo B., Zenger, Kyall R., and van Herwerden, Lynne (2022) The El Niño Southern Oscillation drives multidirectional inter-reef larval connectivity in the Great Barrier Reef. Scientific Reports, 12 (1). 21290.

Kosch, Tiffany A., Waddle, Anthony W., Cooper, Caitlin A., Zenger, Kyall R., Garrick, Dorian J., Berger, Lee, and Skerratt, Lee F. (2022) Genetic approaches for increasing fitness in endangered species. Trends in Ecology & Evolution, 37 (4). pp. 332-345.

Huerlimann, Roger, Cowley, Jeff A., Wade, Nicholas M., Wang, Yinan, Kasinadhuni, Naga, Chan, Chon Kit Kenneth, Jabbari, Jafar S., Siemering, Kirby, Gordon, Lavinia, Tinning, Matthew, Montenegro, Juan D., Maes, Gregory E., Sellars, Melony J., Coman, Gregory J., McWilliam, Sean, Zenger, Kyall R., Khatkar, Mehar S., Raadsma, Herman W., Donovan, Dallas, Krishna, Gopala, and Jerry, Dean R. (2022) Genome assembly of the Australian black tiger shrimp (Penaeus monodon) reveals a novel fragmented IHHNV EVE sequence. G3: Genes, Genomes, Genetics, 12 (4). jkac034.

Whitelaw, Brooke L., Jones, David B., Guppy, Jarrod, Morse, Peter, Strugnell, Jan M., Cooke, Ira R., and Zenger, Kyall (2022) High-Density Genetic Linkage Map of the Southern Blue-ringed Octopus (Octopodidae: Hapalochlaena maculosa). Diversity, 14 (12). 1068.

Jerry, Dean R., Jones, David B., Lillehammer, Marie, Massault, Cecile, Loughnan, Shannon, Cate, Holly S., Harrison, Paul J., Strugnell, Jan M., Zenger, Kyall R., and Robinson, Nicholas A. (2022) Predicted strong genetic gains from the application of genomic selection to improve growth related traits in barramundi (Lates calcarifer). Aquaculture, 549. 737761.

McKnight, Donald T., Huerlimann, Roger, Bower, Deborah S., Schwarzkopf, Lin, Alford, Ross A., and Zenger, Kyall R. (2022) The interplay of fungal and bacterial microbiomes on rainforest frogs following a disease outbreak. Ecosphere, 13 (7). e4037.

Lal, Monal M., Waqairatu, Salote S., Zenger, Kyall R., Nayfa, Maria G., Pickering, Timothy D., Singh, Avinash, and Southgate, Paul C. (2021) The GIFT that keeps on giving? A genetic audit of the Fijian Genetically Improved Farmed Tilapia (GIFT) broodstock nucleus 20 years after introduction. Aquaculture, 537. 736524.

Vu, Nga T.T., Zenger, Kyall R., Nunes Soares Silva, Catarina N.S., Guppy, Jarrod L., and Jerry, Dean R. (2021) Population structure, genetic connectivity, and signatures of local adaptation of the giant black tiger shrimp (Penaeus monodon) throughout the indo-pacific region. Genome Biology and Evolution, 13 (10). evab214.

Massault, C., Jones, D.B., Zenger, K., Strugnell, J.M., Barnard, R., and Jerry, D.R. (2021) A SNP parentage assignment panel for the silver lipped pearl oyster (Pinctada maxima). Aquaculture Reports, 20. 100687.

Marhoefer, Shelby R., Zenger, Kyall R., Strugnell, Jan M., Logan, Murray, van Oppen, Madeleine J.H., Kenkel, Carly D., and Bay, Line K. (2021) Signatures of Adaptation and Acclimatization to Reef Flat and Slope Habitats in the Coral Pocillopora damicornis. Frontiers in Marine Science, 8. 704709.

Nayfa, Maria G., Jones, Dave B., Benzie, John A.H., Jerry, Dean R., and Zenger, Kyall R. (2020) Comparing genomic signatures of selection between the Abbassa Strain and eight wild populations of Nile tilapia (Oreochromis niloticus) in Egypt. Frontiers in Genetics, 11. 567969.

Guppy, Jarrod L., Jones, David B., Kjeldsen, Shannon R., Le Port, Agnes, Khatkar, Mehar S., Wade, Nicholas M., Sellars, Melony J., Raadsma, Herman W., Jerry, Dean R., and Zenger, Kyall R. (2020) Development and validation of a RAD-Seq target-capture based genotyping assay for routine application in advanced black tiger shrimp (Penaeus monodon) breeding programs. BMC Genomics, 21. 541.

Vu, Nga T.T., Zenger, Kyall R., Guppy, Jarrod L., Sellars, Melony J., Nunes Soares Silva, Catarina N.S., Kjeldsen, Shannon R., and Jerry, Dean R. (2020) Fine-scale population structure and evidence for local adaptation in Australian giant black tiger shrimp (Penaeus monodon) using SNP analysis. BMC Genomics, 21. 669.

McKnight, Donald T., Carr, Leah J., Bower, Deborah S., Schwarzkopf, Lin, Alford, Ross A., and Zenger, Kyall R. (2020) Infection dynamics, dispersal, and adaptation: understanding the lack of recovery in a remnant frog population following a disease outbreak. Heredity, 125. pp. 110-123.

McKnight, Donald T., Zenger, Kyall R., Alford, Ross A., and Huerlimann, Roger (2020) Microbiome diversity and composition varies across body areas in a freshwater turtle. Microbiology, 166 (5). pp. 440-452.

Nayfa, Maria G., Jones, David B., Lind, Curtis E., Benzie, John A.H., Jerry, Dean R., and Zenger, Kyall R. (2020) Pipette and paper: combining molecular and genealogical methods to assess a Nile tilapia (Oreochromis niloticus) breeding program. Aquaculture, 523. 735171.

Jones, David B., Nguyen, Huu, Khatkar, Mehar, Simma, David, Jerry, Dean, Raadsma, Herman, Van Der Steen, Hein, Prochaska, Jeffrey, and Zenger, Kyall (2020) The identification of a major sex QTL in the white-leg shrimp, Litopenaeus vannamei. Aquaculture, 529. 735673.

Zenger, Kyall R., Khatkar, Mehar S., Jones, David B., Khalilisamani, Nima, Jerry, Dean R., and Raadsma, Herman W. (2019) Genomic selection in aquaculture: application, limitations and opportunities with special reference to marine shrimp and pearl oysters. Frontiers in Genetics, 9. 693.

Foote, Andrew, Simma, David, Khatkar, Mehar, Raadsma, Herman, Guppy, Jarrod, Coman, Gregory, Giardina, Erika, Jerry, Dean, Zenger, Kyall, and Wade, Nicholas (2019) Considerations for maintaining family diversity in commercially mass-spawned penaeid shrimp: a case study on Penaeus monodon. Frontiers in Genetics, 10. 1127.

Ramirez Flores, Omar, Birtles, Alastair, Pazmino, Diana, Zenger, Kyall R., and Van Herwerden, Lynne (2019) Dwarf minke whales from the South Pacific share a matrilineal lineage distinct from Balaenoptera acutorostrata acutorostrata and B. a. scammoni. Australian Mammalogy, 41 (2). pp. 231-240.

Kjeldsen, Shannon R., Raadsma, Herman W., Leigh, Kellie A., Tobey, Jennifer R., Phalen, David, Krockenberger, Andrew, Ellis, William A., Hynes, Emily, Higgins, Damien P., and Zenger, Kyall R. (2019) Genomic comparisons reveal biogeographic and anthropogenic impacts in the koala (Phascolarctos cinereus): a dietary-specialist species distributed across heterogeneous environments. Heredity, 122 (5). pp. 525-544.

McKnight, Donald T., Huerlimann, Roger, Bower, Deborah S., Schwarzkopf, Lin, Alford, Ross A., and Zenger, Kyall R. (2019) Methods for normalizing microbiome data: an ecological perspective. Methods in Ecology and Evolution, 10 (3). pp. 389-400.

Lapico, Adrian, Sankupellay, Mangalam, Cianciullo, Louis, Myers, Trina, Konovalov, Dmitry A., Jerry, Dean R., Toole, Preston, Jones, David B., and Zenger, Kyall R. (2019) Using image processing to automatically measure pearl oyster size for selective breeding. In: Proceedings of the International Conference on Digital Image Computing. pp. 90-97. From: DICTA 2019: International Conference on Digital Image Computing: Techniques and Applications, 2-4 December 2019, Perth, WA, Australia.

Whitelaw, Brooke L., Cooke, Ira R., Finn, Julian, Zenger, Kyall, and Strugnell, J.M. (2019) The evolution and origin of tetrodotoxin acquisition in the blue-ringed octopus (genus Hapalochlaena). Aquatic Toxicology, 206. pp. 114-122.

Hua, Katheline, Cobcroft, Jennifer M., Cole, Andrew, Condon, Kelly, Jerry, Dean R., Mangott, Arnold, Praeger, Christina, Vucko, Matthew J., Zeng, Chaoshu, Zenger, Kyall, and Strugnell, Jan M. (2019) The future of aquatic protein: implications for protein sources in aquaculture diets. One Earth, 1 (3). pp. 316-329.

McKnight, Donald T., Huerlimann, Roger, Bower, Deborah S., Schwarzkopf, Lin, Alford, Ross A., and Zenger, Kyall R. (2019) microDecon: a highly accurate read‐subtraction tool for the post‐sequencing removal of contamination in metabarcoding studies. Environmental DNA, 1 (1). pp. 14-25.

McKnight, Donald T., Lal, Monal M., Bower, Deborah S., Schwarzkopf, Lin, Alford, Ross A., and Zenger, Kyall R. (2019) The return of the frogs: the importance of habitat refugia in maintaining diversity during a disease outbreak. Molecular Ecology, 28 (11). pp. 2731-2745.

Huerlimann, Roger, Wade, Nicholas M., Gordon, Lavinia, Montenegro, Juan D., Goodall, Jake, McWilliam, Sean, Tinning, Matthew, Siemering, Kirby, Giardina, Erika, Donovan, Dallas, Sellars, Melony J., Cowley, Jeff A., Condon, Kelly, Coman, Greg J., Khatkar, Mehar S., Raadsma, Herman W., Maes, Gregory E., Zenger, Kyall R., and Jerry, Dean R. (2018) De novo assembly, characterization, functional annotation and expression patterns of the black tiger shrimp (Penaeus monodon) transcriptome. Scientific Reports, 8. 13553.

Basiita, Rose K., Zenger, Kyall R., Mwanja, Matthew T., and Jerry, Dean R. (2018) Gene flow and genetic structure in Nile perch, Lates niloticus, from African freshwater rivers and lakes. PLoS ONE, 13 (7). e0200001.

Al-Breiki, Rufaida Dhuhai, Kjeldsen, Shannon R., Afzal, Hasifa, Al Hinai, Manal Saif, Zenger, Kyall R., Jerry, Dean R., Al-Abri, Mohammed Ali, and Delghandi, Madjid (2018) Genome-wide SNP analyses reveal high gene flow and signatures of local adaptation among the scalloped spiny lobster (Panulirus homarus) along the Omani coastline. BMC Genomics, 19. 690.

Morse, Peter, Kjeldsen, Shannon R., Meekan, Mark G., McCormick, Mark I., Finn, Julian, Huffard, Christine L., and Zenger, Kyall R. (2018) Genome-wide comparisons reveal a clinal species pattern within a holobenthic octopod - the Australian Southern blue-ringed octopus, Hapalochlaena maculosa (Cephalopoda: Octopodidae). Ecology and Evolution, 8 (4). pp. 2253-2267.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., and Zenger, Kyall R. (2018) Genome-wide comparisons reveal evidence for a species complex in the black-lip pearl oyster Pinctada margaritifera (Bivalvia: Pteriidae). Scientific Reports, 8. 191.

Morse, Peter, Huffard, Christine L., Meekan, Mark G., McCormick, Mark I., and Zenger, Kyall R. (2018) Mating behaviour and postcopulatory fertilization patterns in the southern blue-ringed octopus, Hapalochlaena maculosa. Animal Behaviour, 136. pp. 41-51.

Nugraha, Roni, Kamath, Sandip D., Johnston, Elecia, Zenger, Kyall R., Rolland, Jennifer M., O’Hehir, Robyn E., and Lopata, Andreas L. (2018) Rapid and comprehensive discovery of unreported shellfish allergens using large-scale transcriptomic and proteomic resources. Journal of Allergy and Clinical Immunology, 141 (4). e8. pp. 1501-1504.

Domingos, Jose A., Budd, Alyssa M., Banh, Quyen Q., Goldsbury, Julie A., Zenger, Kyall R., and Jerry, Dean R. (2018) Sex-specific dmrt1 and cyp19a1 methylation and alternative splicing in gonads of the protandrous hermaphrodite barramundi. PLoS ONE, 13 (9). e0204182.

Guppy, Jarrod L., Jones, Dave B., Jerry, Dean R., Wade, Nicholas M., Raadsma, Herman W., Huerlimann, Roger, and Zenger, Kyall R. (2018) The state of "omics" research for farmed penaeids: advances in research and impediments to industry utilization. Frontiers in Genetics, 9. 282.

Khatkar, M.S., Zenger, K.R., Jones, D.B., Prochaska, Jeff, van der Steen, H.A.M., Jerry, D.R., and Raadsma, H.W. (2017) Quantitative genomic analyses in the pacific whiteleg shrimp litopenaeus vannamei. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics (22) pp. 121-124. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Khatkar, M.S., Jones, D.B., Toole, P.B., Raadsma, H.W., Jerry, D.R., and Zenger, K.R. (2017) Reconstruction of unknown donor genome from chimeric pearl sac tissue and host genotypes in pinctada maxima. In: Proceedings of the Association for the Advancement of Animal Breeding and Genetics. pp. 445-448. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Zenger, K.R., Khatkar, M.S., Jerry, D.R., and Raadsma, H.W. (2017) The next wave in selective breeding: implementing genomic selection in aquaculture. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. pp. 105-112. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Eldridge, Mark D.B., Miller, Emily J., Neaves, Linda E., Zenger, Kyall R., and Herbert, Catherine (2017) Extensive genetic differentiation detected within a model marsupial, the tammar wallaby (Notamacropus eugenii). PLoS ONE, 12 (3). e0172777. pp. 1-23.

Basiita, Rose Komugisha, Zenger, Kyall Richard, and Jerry, Dean Robert (2017) Populations genetically rifting within a complex geological system: the case of strong structure and low genetic diversity in the migratory freshwater catfish, Bagrus docmak, in East Africa. Ecology and Evolution, 7 (16). pp. 6172-6187.

Morse, Peter, Zenger, Kyall R., McCormick, Mark I., Meekan, Mark G., and Huffard, Christine L. (2017) Chemical cues correlate with agonistic behaviour and female mate choice behaviour in the southern blue-ringed Octopus, Hapalochlaena maculosa (Cephalopoda: Octopodidae). Journal of Molluscan Studies, 83 (1). pp. 79-87.

Jones, D.B., Toole, P.B., Khatkar, M.S., Raadsma, H.W., Jerry, D.R., and Zenger, K.R. (2017) Developing a genomic selection breeding program for complex pearl colour traits within the silver-lipped pearl oyster. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. pp. 537-540. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

Jones, D.B., Zenger, K.R., Khatkar, M.S., Raadsma, H.W., van der Steen, H.A.M., Prochaska, J., Fôret, S., and Jerry, D.R. (2017) Development of a low density commercial genotyping array for the white legged shrimp, Litopenaeus vannamei. In: Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. pp. 117-120. From: AAABG 2017: 22nd Conference of the Association for the Advancement of Animal Breeding and Genetics, 2-5 July 2017, Townsville, QLD, Australia.

McKnight, Donald T., Schwarzkopf, Lin, Alford, Ross A., Bower, Deborah S., and Zenger, Kyall R. (2017) Effects of emerging infectious diseases on host population genetics: a review. Conservation Genetics, 18. pp. 1235-1245.

McKnight, Donald T., Alford, Ross A., Hoskin, Conrad J., Schwarzkopf, Lin, Greenspan, Sasha E., Zenger, Kyall R., and Bower, Deborah S. (2017) Fighting an uphill battle: the recovery of frogs in Australia's Wet Tropics. Ecology, 98 (12). pp. 3221-3223.

Banh, Quyen Q., Domingos, Jose A., Zenger, Kyall R., and Jerry, Dean R. (2017) Morphological changes and regulation of the genes dmrt1 and cyp11b during the sex differentiation of barramundi (Lates calcarifer Bloch). Aquaculture, 479. pp. 75-84.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., Bosserelle, Cyprien, and Zenger, Kyall R. (2017) Swept away: ocean currents and seascape features influence genetic structure across the 18,000 Km Indo-Pacific distribution of a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera. BMC Genomics, 18. 66. pp. 1-21.

Jones, David B., Jerry, Dean R., Khatkar, Mehar, Raadsma, Herman W., van der Steen, Hein, Prochaska, Jeffrey, Fôret, Sylvain, and Zenger, Kyall R. (2017) A comparative integrated gene-based linkage and locus ordering by linkage disequilibrium map for the Pacific white shrimp, Litopenaeus vannamei. Scientific Reports, 7. 10360.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., and Zenger, Kyall R. (2016) Fishing for divergence in a sea of connectivity: the utility of ddRADseq genotyping in a marine invertebrate, the black-lip pearl oyster Pinctada margaritifera. Marine Genomics, 25. pp. 57-68.

Steinig, Eike J., Neuditschko, Markus, Khatkar, Mehar S., Raadsma, Herman W., and Zenger, Kyall R. (2016) NETVIEW P: a network visualization tool to unravel complex population structure using genome-wide SNPs. Molecular Ecology Resources, 16 (1). pp. 216-227.

Kjeldsen, Shannon R., Zenger, Kyall R., Leigh, Kellie, Ellis, William, Tobey, Jenifer, Phalen, David, Melzer, Alistair, FitzGibbon, Sean, and Raadsma, Herman W. (2016) Genome-wide SNP loci reveal novel insights into koala (Phascolarctos cinereus) population variability across its range. Conservation Genetics, 17 (2). pp. 337-353.

Nugraha, Roni, Kamath, Sandip D., Ruethers, Thimo, Johnston, Elecia, Koeberl, Martina, Rolland, Jennifer M., O'Hehir, Robyn E., Zenger, Kyall R., and Lopata, Andreas L. (2016) Identification of novel oyster allergens using a combined transcriptomic and proteomic approach for improved component resolved diagnosis. Internal Medicine Journal, 46 (Supplement 4). P16. p. 9.

Nayfa, Maria G., and Zenger, Kyall R. (2016) Unravelling the effects of gene flow and selection in highly connected populations of the silver-lip pearl oyster (Pinctada maxima). Marine Genomics, 28. pp. 99-106.

Lal, Monal M., Southgate, Paul C., Jerry, Dean R., Bosserelle, Cyprien, and Zenger, Kyall R. (2016) A parallel population genomic and hydrodynamic approach to fishery management of highly-dispersive marine invertebrates: the case of the Fijian Black-Lip Pearl Oyster Pinctada margaritifera. PLoS One, 11 (8). e0161390. pp. 1-26.

Huerlimann, Roger, Zenger, Kyall R., Jerry, Dean R., and Heimann, Kirsten (2015) Phylogenetic analysis of nucleus-encoded acetyl-CoA carboxylases targeted at the cytosol and plastid of algae. PLoS ONE, 10 (7). e0131099. pp. 1-10.

Basiita, Rose K., Zenger, Kyall R., Mwanja, Matthew T., and Jerry, Dean R. (2015) Development of genome-wide microsatellite genetic resources in a commercially important African freshwater fish species – the Nile perch, Lates niloticus. Animal Genetics, 46 (3). p. 340.

Morse, Peter, Zenger, Kyall R., McCormick, Mark I., Meekan, Mark G., and Huffard, Christine L. (2015) Nocturnal mating behaviour and dynamic male investment of copulatory time in the Southern Blue-Ringed Octopus, Hapalochlaena maculosa (Cephalopoda: Octopodidae). Behaviour, 152. pp. 1883-1910.

Domingos, Jose A., Zenger, Kyall R., and Jerry, Dean R. (2015) Whole-genome shotgun sequence assembly enables rapid gene characterization in the tropical fish barramundi, Lates calcarifer. Animal Genetics, 46 (4). pp. 468-469.

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Moser, Gerhard, Raadsma, Herman W., Taylor, Joseph J., and Zenger, Kyall R. (2014) Determining genetic contributions to host oyster shell growth: quantitative trait loci and genetic association analysis for the silver-lipped pearl oyster, Pinctada maxima. Aquaculture, 434. pp. 367-375.

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Moser, Gerhard, Raadsma, Herman W., Taylor, Joseph J., and Zenger, Kyall R. (2014) Quantitative trait loci and genetic association analysis reveals insights into complex pearl quality traits in donor silver-lipped pearl oysters. Aquaculture, 434. pp. 476-485.

Huerlimann, Roger, Steinig, Eike J., Loxton, Heather, Zenger, Kyall R., Jerry, Dean R., and Heimann, Kirsten (2014) Effects of growth phase and nitrogen starvation on expression of fatty acid desaturases and fatty acid composition of Isochrysis aff. galbana (TISO). Gene, 545 (1). pp. 36-44.

Huerlimann, Roger, Steinig, Eike J., Loxton, Heather, Zenger, Kyall, Jerry, Dean R., and Heimann, Kirsten (2014) The effect of nitrogen limitation on acetyl-CoA carboxylase expression and fatty acid content in Chromera velia and Isochrysis aff. galbana (TISO). Gene, 543 (2). pp. 204-211.

Jones, David B., Jerry, Dean R., Forêt, Sylvain, Konovalov, Dmitry A., and Zenger, Kyall R. (2013) Genome-wide SNP validation and mantle tissue transcriptome analysis in the silver-lipped pearl oyster, Pinctada maxima. Marine Biotechnology, 15 (6). pp. 647-658.

Jones, David B., Jerry, Dean R., Khatkar, Mehar S., Raadsma, Herman W., and Zenger, Kyall R. (2013) A high-density SNP genetic linkage map for the silver-lipped pearl oyster, Pinctada maxima: a valuable resource for gene localisation and marker-assisted selection. BMC Genomics, 14. 810. pp. 1-18.

Newton, James R., Zenger, Kyall R., and Jerry, Dean R. (2013) Next-generation transcriptome profiling reveals insights into genetic factors contributing to growth differences and temperature adaptation in Australian populations of barramundi (Lates calcarifer). Marine Genomics, 11. pp. 45-52.

Neaves, Linda E., Zenger, Kyall R., Prince, Robert I.T., and Eldridge, Mark D.B. (2013) Paternally inherited genetic markers reveal new insights into genetic structuring within Macropus fuliginosus and hybridisation with sympatric Macropus giganteus. Australian Journal of Zoology, 61 (1). pp. 58-68.

McGinty, E.L., Zenger, K.R., Jones, D.B., and Jerry, D.R. (2012) Transcriptome analysis of biomineralisation-related genes within the pearl sac: host and donor oyster contribution. Marine Genomics, 5. pp. 27-33.

Lee, Tristan, Zenger, Kyall R., Close, Robert L., and Phalen, David N. (2012) Genetic analysis reveals a distinct and highly diverse koala (Phascolarctos cinereus) population in South Gippsland, Victoria, Australia. Australian Mammalogy, 34 (1). pp. 1-7.

Neaves, Linda E., Zenger, Kyall R., Prince, Robert I.T., and Eldridge, Mark D.B. (2012) Impact of Pleistocene aridity oscillations on the population history of a widespread, vagile Australian mammal, Macropus fuliginosus. Journal of Biogeography, 39 (8). pp. 1545-1563.

Leigh, Kellie A., Zenger, Kyall R., Tammen, Imke, and Raadsma, Herman W. (2012) Loss of genetic diversity in an outbreeding species: small population effects in the African wild dog (Lycaon pictus). Conservation Genetics, 13 (3). pp. 767-777.

Jones, D.B., Zenger, K.R., and Jerry, D.R. (2011) In silico whole-genome EST analysis reveals 2322 novel microsatellites for the silver-lipped pearl oyster, Pinctada maxima. Marine Genomics, 4 (4). pp. 287-290.

Renfree, Marilyn B., Papenfuss, Anthony T., Deakin, Janine E., Lindsay, James, Heider, Thomas, Belov, Katherine, Rens, Willem, Waters, Paul D., Pharo, Elizabeth A., Shaw, Geoff, Wong, Emily S.W., Lefèvre, Christopher P., Nicholas, Kevin R., Kuroki, Yoko, Wakefield, Matthew J., Zenger, Kyall R., Wang, Chenwei , Ferguson-Smith, Malcolm, Nicholas, Frank W., Hickford, Danielle, Yu, Hongshi, Short, Kirsty R., Siddle, Hannah V., Frankenberg, Stephen R., Chew, Keng Y., Menzies, Brandon R., Stringer, Jessica M., Suzuki, Shunsuke, Hore, Timothy A., Delbridge, Margaret L., Mohammadi, Amir, Schneider, Nanette Y., Hu, Yanqiu, O'Hara, William, Al Nadaf, Shafagh , Wu, Chen, Feng, Zhi-Ping, Cocks, Benjamin G., Wang, Jianghui, Flicek, Paul, Searle, Stephen M.J., Fairley, Susan, Beal, Kathryn, Herrero, Javier, Carone, Dawn M., Suzuki, Yutaka, Kondo, Shinji, Nishida, Yuichiro, Tatsumoto, Shoji, Mandiou, Ion, Hsu, Arthur, McColl, Kaighin A., Lansdell, Benjamin, Weinstock, George, Kuczek, Elizabeth, McGrath, Annette, Wilson, Peter, Men, Artem , Hazar-Rethinam, Mehlika, Hall, Allison, Davis, John, Wood, David, Williams, Sarah, Sundaravadanam, Yogi, Muzny, Donna M., Jhangiani, Shalini N., Lewis, Lora R., Morgan, Margaret B., Okwuonu, Geoffrey O., Ruiz, San J., Santibanez, Jireh, Nazareth, Lynne, Cree, Andrew, Fowler, Gerard, Kovar, Christie L., Dinh, Huyen H., Joshi, Vandita, Jing, Chyn, Lara, Fremiet, Thornton, Rebecca, Chen, Lei, Deng, Jixin, Liu, Yue, Shen, Joshua Y., Song, Xing-Zhi, Edson, Janette, Troon, Carmen, Thomas, Daniel, Stephens, Amber, Yapa, Lankesha, Levchenko, Tanya, Gibbs, Richard A., Cooper, Desmond W., Speed, Terence P., Fujiyama, Asao, Sugano, Sumio, Graves, Jennifer A.M., O'Neill, Rachel J., Pask, Andrew J., Forrest, Susan M., Toyoda, Atsushi, Sakaki, Yoshiyuki, and Worley, Kim C. (2011) Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. Genome Biology, 12 (8). R81. pp. 1-25.

Wang, Chenwei, Deakin, Janine E., Rens, Willem, Zenger, Kyall R., Belov, Katherine, Marshall Graves, Jennifer A., and Nicholas, Frank W. (2011) A first-generation integrated tammar wallaby map and its use in creating a tammar wallaby first-generation virtual genome map. BMC Genomics, 12. 422. pp. 1-12.

Wang, Chenwei, Webley, Lee, Wei, Ke-jun, Wakefield, Matthew J., Patel, Hardip R., Deakin, Janine E., Alsop, Amber, Marshall Graves, Jennifer A., Cooper, Desmond W., Nicholas, Frank W., and Zenger, Kyall R. (2011) A second-generation anchored genetic linkage map of the tammar wallaby (Macropus eugenii). BMC Genetics, 12. 72. pp. 1-16.

McGinty, Erin L., Zenger, Kyall R., Taylor, Joseph U.U., Evans, Brad S., and Jerry, Dean R. (2011) Diagnostic genetic markers unravel the interplay between host and donor oyster contribution in cultured pearl formation. Aquaculture, 316 (1-4). pp. 20-24.

Miller, Emily J., Eldridge, Mark D.B., Morris, Keith D., Zenger, Kyall R., and Herbert, Catherine A. (2011) Genetic consequences of isolation: island tammar wallaby (Macropus eugenii) populations and the conservation of threatened species. Conservation Genetics, 12 (6). pp. 1619-1631.

Lee, Tristan, Zenger, Kyall R., Close, Robert L., Jones, Marilyn, and Phalen, David N. (2010) Defining spatial genetic structure and management units for vulnerable koala (Phascolarctos cinereus) populations in the Sydney region, Australia. Wildlife Research, 37 (2). pp. 156-165.

Neaves, L.E., Zenger, K.R., Cooper, D.W., and Eldridge, M.D.B. (2010) Molecular detection of hybridization between sympatric kangaroo species in south-eastern Australia. Heredity, 104. pp. 502-512.

Neaves, Linda E., Zenger, Kyall R., Prince, Robert I.T., Eldridge, Mark D.B., and Cooper, Desmond W. (2009) Landscape discontinuities influence gene flow and genetic structure in a large, vagile Australian mammal, Macropus fuliginosus. Molecular Ecology, 18 (16). pp. 3363-3378.

Haynes, Gwilym D., Gongora, Jaime, Nicholas, Frank W., and Zenger, Kyall R. (2009) Rapid identification of maternal lineages in common carp (Cyprinus carpio L.) using real-time PCR and high resolution melt-curve analysis. Aquaculture, 287 (1-2). pp. 59-66.

Raadsma, H.W., Jonas, E., Zenger, K.R., Cavanah, C.A., Lam, M.K., and Thomson, P.C. (2009) Mapping QTL for early growth and maternal performance in sheep. In: Proceedings of the AAABG 18th Conference (18) pp. 640-643. From: 18th AAABG Conference 2009, 28 September - 1 October 2009, Barossa Valley, SA, Australia.

Raadsma, Herman W., Thomson, Peter C., Zenger, Kyall R., Cavanagh, Colin, Lam, Mary K., Jonas, Elisabeth, Jones, Marilyn, Attard, Gina, Palmer, David, and Nicholas, Frank W. (2009) Mapping quantitative trait loci (QTL) in sheep. I: a new male framework linkage map and QTL for growth rate and body weight. Genetics Selection Evolution, 41. pp. 1-10.

Khatkar, Mehar S., Nicholas, Frank W., Collins, Andrew R., Zenger, Kyall R., Cavanagh, Julie A.L., Barris, Wes, Schnabel, Robert D., Taylor, Jeremy F., and Raadsma, Herman W. (2008) Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel. BMC Genomics, 9 (187). pp. 1-18.

Raadsma, H.W., Moser, G., Crump, R.E., Khatkar, M.S., Zenger, K.R., Cavanagh, J.A.L., Hawken, R.J., Hobbs, M., Barris, W., Solkner, J., Nicholas, F.W., Tier, B., and UNSPECIFIED (2008) Predicting genetic merit for mastitis and fertility in dairy cattle using genome wide selection and high density SNP screens. Developments in Biologicals, 132. pp. 219-223.

Khatkar, Mehar S., Zenger, Kyall R., Hobbs, Matthew, Hawken, Rachel J., Cavanagh, Julie A.L., Barris, Wes, McClintock, Alexander E., McClintock, Sara, Thomson, Peter C., Tier, Bruce, Nicholas, Frank W., and Raadsma, Herman W. (2007) A primary assembly of a Bovine Haplotype Block Map based on a 15,036-Single-Nucleotide Polymorphism Panel genotyped in Holstein–Friesian Cattle. Genetics, 176. pp. 763-772.

Webley, Lee S., Zenger, Kyall R., Hall, Graham P., and Cooper, Desmond W. (2007) Genetic structure of introduced European fallow deer (Dama dama dama) in Tasmania, Australia. European Journal of Wildlife Research, 53 (1). pp. 40-46.

Zenger, K.R., Khatkar, M.S., Cavanagh, J.A.L., Hawken, R.J., and Raadsma, H.W. (2007) Genome-wide genetic diversity of Holstein Friesian cattle reveals new insights into Australian and global population variability, including impact of selection. Animal Genetics, 38 (1). pp. 7-14.

Raadsma, H.W., Fullard, K., Zenger, K.R., Cavanagh, J.A., Thomson, P.C., Lam, M., Piedrafita, D., Margawati, E., Widjayanti, S., Estiningsih, E., and Nicholas, F.W. (2007) Building an integrated QTL map for all major production traits in sheep based on multiple QTL mapping populations. In: Proceedings of the AAABG:17th Conference 2007 (17) pp. 127-130. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Khatkar, M.S., Zenger, K.R., Cavanagh, J.A.L., Hawken, R.J., Hobbs, M., Barris, W., Thomson, P.C., Nicholas, F.W., Tier, B., and Raadsma, H.W. (2007) Extent of linkage disequilibrium and haplotype blocks in bovine genome using high density SNP markers. In: Proceedings of the Association for the Advancement of Animal Breeding and Genetics (17) pp. 215-218. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Moser, G., Crump, R.E., Tier, B., Solkner, J., Zenger, K.R., Khatkar, M.S., Cavanagh, J.A.L., and Raadsma, H.W. (2007) Genome based genetic evaluation and genome wide selection using supervised dimension reduction based on partial least squares. In: Proceedings of the Association for the Advancement of Animal Breeding and Genetics (17) pp. 227-230. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Raadsma, H.W., Zenger, K.R., Khatkar, M.S., Crump, R., Moser, G., Solkner, J., Cavanagh, J.A.L., Hawken, R.J., Hobbs, M., Barris, W., Nicholas, F.W., and Tier, B. (2007) Genome wide selection in dairy cattle based on high-density genome-wide SNP analysis: from discovery to application. In: Proceedings of the Association for the Advancement of Animal Breeding and Genetics (17) pp. 231-234. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Crump, R.E., Tier, B., Moser, G., Solkner, J., Kerr, R.J., Woolaston, A.F., Zenger, K.R., Khatkar, M.S., Cavanagh, J.A.L., and Raadsma, H.W. (2007) Genome-wide selection in dairy cattle: use of genetic algorithms in the estimation of molecular breeding values. In: Proceedings of the AAABG 17th Conference 2007 (17) pp. 304-307. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Singh, M., Lam, M., McGill, D., Thomson, P.C., Cavanagh, J.A., Zenger, K.R., and Raadsma, H.W. (2007) High resolution mapping of quantitative trait loci on ovine chromosome 3 and 20 affecting protein yield and lactation persistency. In: Proceedings of the AAABG 17th Conference 2007 (17) pp. 565-568. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Zenger, K.R., Khatkar, M.S., Tier, B., Hobbs, M., Cavanagh, J.A.L., Solkner, J., Hawken, R.J., Barris, W., and Raadsma, H.W. (2007) QC analyses of SNP array data: experience from a large population of dairy sires with 23.8 million data points. In: Proceedings of the AAABG 17th Conference 2007 (17) pp. 123-126. From: 17th AAABG Conference 2007, 23-26 September 2007, Armidale, NSW, Australia.

Macdonald, Anna J., Sankovic, Natasha, Sarr, Stephen D., Fitzsimmons, Nancy N., Wakefield, Matthew J., Marshall Graves, Jennifer A., and Zenger, Kyall R. (2006) Y chromosome microsatellite markers identified from the tammar wallaby (Macropus eugenii) and their amplification in three other macropod species. Molecular Ecology, 6 (4). pp. 1202-1204.

Khatkar, Mehar S., Collins, Andrew, Cavanagh, Julie A.L., Hawken, Rachel J., Hobbs, Matthew, Zenger, Kyall R., Barris, Wes, McClintock, Alexander E., Thomson, Peter C., Nicholas, Frank W., and Raadsma, Herman W. (2006) A first-generation metric linkage disequilibrium map of bovine chromosome 6. Genetics, 174. pp. 79-85.

Stow, Adam, Zenger, Kyall, Briscoe, David, Gillings, Michael, Peddemors, Victor, Otway, Nicholas, and Harcourt, Robert (2006) Isolation and genetic diversity of endangered grey nurse shark (Carcharias taurus) populations. Biology Letters, 2 (2). pp. 308-311.

Hawken, R.J., Cavanagh, J.A.L., Meadows, J.R.S., Khatkar, M.S., Husaini, Y., Zenger, K.R., McClintock, S., McClintock, A.E., and Raadsma, H.W. (2006) Whole-genome amplification of DNA extracted from cattle semen samples. Journal of Dairy Science, 89 (6). pp. 2217-2221.

Zenger, Kyall R., Stow, Adam J., Peddemors, Victor, Briscoe, David A., and Harcourt, Robert G. (2006) Widespread utility of highly informative AFLP molecular markers across divergent shark species. Journal of Heredity, 97 (6). pp. 607-611.

Zenger, Kyall R., Eldridge, Mark D.B., and Johnston, Peter G. (2005) Phylogenetics, population structure and genetic diversity of the endangered southern brown bandicoot (Isoodon obesulus) in south-eastern Australia. Conservation Genetics, 6 (2). pp. 193-204.

Cheun, Carol C., Martin, Ian C.A., Zenger, Kyall R., Donald, Jenny A., Thomson, Peter C., Moran, Christopher, and Buckley, Michael F. (2004) Quantitative trait loci for steady-state platelet count in mice. Mammalian Genome, 15 (10). pp. 784-797.

Webley, L. S., Zenger, K. R., English, A. W., and Cooper, D. W. (2004) Low levels of genetic variation within introduced Javan rusa deer (Cervus timorensis russa) in Australia. European Journal of Wildlife Research, 50 (3). pp. 137-140.

Eldridge, M.D.B., Kinnear, J.E., Zenger, K.R., McKenzie, L.M., and Spencer, P.B.S. (2004) Genetic diversity in remnant mainland and "pristine"’ island populations of three endemic Australian macropodids (Marsupialia): Macropus eugenii, Lagorchestes hirsutus and Petrogale lateralis. Conservation Genetics, 5 (3). pp. 325-338.

Eldridge, Mark D.B., Rummery, Catherine, Bray, Cherylin, Zenger, Kyall R., Browning, Teena L., and Close, Robert L. (2004) Genetic analysis of a population crash in brush-tailed rock-wallabies (Petrogale penicillata) from Jenolan Caves, south-eastern Australia. Wildlife Research, 31 (3). pp. 229-240.

Zenger, Kyall R., Eldridge, Mark D.B., and Johnston, Peter G. (2003) A rapid PCR-RFLP diagnostic test for distinguishing sympatric bandicoot species (Marsupialia: Peramelidae) in southeastern Australia. Conservation Genetics, 4 (5). pp. 655-657.

Zenger, K.R., Eldridge, M.D.B., and Cooper, D.W. (2003) Intraspecific variation, sex-biased dispersal and phylogeography of the eastern grey kangaroo (Macropus giganteus). Heredity, 91 (2). pp. 153-162.

Zenger, K.R., Richardson, B.J., and Vachot-Griffin, A-M. (2003) A rapid population expansion retains genetic diversity within European rabbits in Australia. Molecular Ecology, 12 (3). pp. 789-794.

Zenger, K.R., Eldridge, M.D.B., Pope, L.C., and Cooper, D.W. (2003) Characterisation and cross-species utility of microsatellite markers within kangaroos, wallabies and rat kangaroos (Macropodoidea: Marsupialia). Australian Journal of Zoology, 51 (6). pp. 587-596.

Belov, Katherine, Nguyen, Mai-Anh T., Zenger, Kyall R., and Cooper, Desmond W. (2002) Ontogeny of immunoglobulin expression in the brushtail possum (Trichosurus vulpecula). Developmental and Comparative Immunology, 26 (7). pp. 599-602.

Zenger, Kyall R., McKenzie, Louise M., and Cooper, Desmond W. (2002) The first comprehensive genetic linkage map of a marsupial: the Tammar wallaby (Macropus eugenii). Genetics, 162 (1). pp. 321-330.

Phillips, S., Zenger, K.R., and Richardson, B.J. (2002) Are Sydney rabbits different? Australian Zoologist, 32 (1). pp. 49-55.

Belov, Katherine, Zenger, Kyall R., Hellman, Lars, and Cooper, Desmond (2002) Echidna IgA supports mammalian unity and traditional Therian relationship. Mammalian Genome, 13 (11). pp. 656-663.

Zenger, K.R., and Cooper, D.W. (2001) Characterization of 14 macropod microsatellite genetic markers. Animal Genetics, 32 (3). pp. 166-167.

Zenger, K.R., and Johnston, P.G. (2001) Isolation and characterization of microsatellite loci in the southern brown bandicoot (Isoodon obesulus), and their applicability to other marsupial species. Molecular Ecology Resources, 1 (3). pp. 149-151.

Zenger, K.R., and Cooper, D.W. (2001) A set of highly polymorphic microsatellite markers developed for the eastern grey kangaroo (Macropus giganteus). Molecular Ecology Notes, 1 (1-2). pp. 98-100.

Sunnucks, P., Wilson, A.C.C., Beheregaray, L.B., Zenger, K., French, J., and Taylor, A.C. (2000) SSCP is not so difficult: the application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology. Molecular Ecology, 9 (11). pp. 1699-1710.