A

Ani, Chinenye Jane (2023) Biogeochemical modelling of tropical marine ecosystems in the context of climate change. PhD thesis, James Cook University.

Aston, Eoghan (2023) Quantifying and assessing coral reef structural complexity and its role in ecological processes and dynamics using photogrammetry. PhD thesis, James Cook University.

Ani, Chinenye J., Smithers, Scott G., Lewis, Stephen, Baird, Mark, and Robson, Barbara (2023) eReefs modelling suggests Trichodesmium may be a major nitrogen source in the Great Barrier Reef. Estuarine, Coastal and Shelf Science, 285. 108306.

Abhik, Santra, Hope, Pandora, Hendon, Harry H., Hutley, Lindsay B., Johnson, Stephanie, Drosdowsky, Wasyl, Brown, Josephine R, and Duke, Norman C. (2021) Influence of the 2015–2016 El Niño on the record‑breaking mangrove dieback along northern Australia coast. Scientific Reports, 11. 20411.

Allard, Sarah M., Costa, Matthew T., Bulseco, Ashley N., Helfer, Véronique, Wilkins, Laetitia G.E., Hassenrück, Christiane, Zengler, Karsten, Zimmer, Martin, Erazo, Natalia, Mazza Rodrigues, Jorge L., Duke, Norman, Melo, Vânia M.M., Vanwonterghem, Inka, Junca, Howard, Makonde, Huxley M., Jiménez, Diego Javier, Tavares, Tallita C.L., Fusi, Marco, Daffonchio, Daniele, Duarte, Carlos M., Peixoto, Raquel S., Rosado, Alexandre S., Gilbert, Jack A., and Bowman, Jeff (2020) Introducing the mangrove microbiome initiative: identifying microbial research priorities and approaches to better understand, protect, and rehabilitate mangrove ecosystems. mSystems, 5 (5). e0065820.

Ayling, T., Ayling, A., Chartrand, K.M., and Rasheed, M.A. (2019) Ports of Mackay and Hay Point Ambient Coral Monitoring Surveys: 2017-2018. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

B

Bergseth, Brock J., Arias, Adrian, Barnes, Michele L., Caldwell, Iain, Datta, Amber, Gelcich, Stefan, Ham, Sam H., Lau, Jacqueline D., Ruano-Chamorro, Cristina, Smallhorn-West, Patrick, Weekers, Damian, Zamborain-Mason, Jessica, and Cinner, Joshua E. (2023) Closing the compliance gap in marine protected areas with human behavioural sciences. Fish and Fisheries, 24. pp. 695-704.

Buñuel, Xavier, Alcoverro, Teresa, Boada, Jordi, Zinkunegi, Leire, Smith, Timothy M., Barrera, Anaïs, Casas, Marc, Farina, Simone, Pérez, Marta, Romero, Javier, Arthur, Rohan, and Pagès, Jordi F. (2023) Indirect grazing-induced mechanisms contribute to the resilience of Mediterranean seagrass meadows to sea urchin herbivory. Oikos, 2023 (6). e09520.

Bradley, Michael, Nagelkerken, Ivan, Baker, Ronald, Travers, Michael, and Sheaves, Marcus (2022) Local Environmental Context Structures Animal-Habitat Associations Across Biogeographic Regions. Ecosystems, 25. pp. 237-251.

Bakker, Wiene, Ens, Bruno J., Dokter, Adriaan, van der Kolk, Henk Jan, Rappoldt, Kees, van de Pol, Martijn, Troost, Karin, van der Veer, Henk W., Bijleveld, Allert I., van der Meer, Jaap, Oosterbeek, Kees, Jongejans, Eelke, and Allen, Andrew M. (2021) Connecting foraging and roosting areas reveals how food stocks explain shorebird numbers. Estuarine, Coastal and Shelf Science, 259. 107458.

Bainbridge, Zoe, Lewis, Stephen, Stevens, Thomas, Petus, Caroline, Lazarus, Emily, Gorman, Jessica, and Smithers, Scott (2021) Measuring sediment grain size across the catchment to reef continuum: improved methods and environmental insights. Marine Pollution Bulletin, 168. 112339.

Bahadori, Mohammad, Chen, Chengrong, Lewis, Stephen, Boyd, Sue, Rashti, Mehran, Esfandbod, Maryam, Van Zwieten, Lukas, and Kuzyakov, Yakov (2021) Soil organic matter formation is controlled by the chemistry and bioavailability of organic carbon inputs across different land uses. Science of the Total Environment, 770. 145307.

Borland, Hayden P., Gilby, Ben L., Henderson, Christopher J., Leon, Javier X., Schlacher, Thomas A., Connolly, Rod M., Pittman, Simon J., Sheaves, Marcus, and Olds, Andrew D. (2021) The influence of seafloor terrain on fish and fisheries: a global synthesis. Fish and Fisheries, 22 (4). pp. 707-734.

Bradley, Michael, Nagelkerken, Ivan, Baker, Ronald, and Sheaves, Marcus (2020) Context dependence: a conceptual approach for understanding the habitat relationships of Coastal Marine Fauna. BioScience, 70 (11). pp. 986-1004.

Brodie, G., Brodie, J., Maata, M., Peter, M., Otiawa, T., and Devlin, M.J. (2020) Seagrass habitat in Tarawa Lagoon, Kiribati: service benefits and links to national priority issues. Marine Pollution Bulletin, 155. 111099.

Bernal, Moises A., Schunter, Celia, Lehmann, Robert, Lightfoot, Damien J., Allan, Bridie J.M., Veilleux, Heather D., Rummer, Jodie L., Munday, Philip L., and Ravasi, Timothy (2020) Species-specific molecular responses of wild coral reef fishes during a marine heatwave. Science Advances, 6 (12). eaay3423.

Broadhurst, Matt K., Smith, Timonthy M., Millar, Russell B., Hughes, Brian, Raoult, Vincent, and Gaston, Troy F. (2019) Cumulative selectivity benefits of increasing mesh size and using escape gaps in Australian Portunus armatus traps. Fisheries Management and Ecology, 26 (4). pp. 319-326.

Bryant, C.V., Wells, J.N., and Rasheed, M.A. (2019) Port of Townsville Annual Seagrass Monitoring Survey: October 2018. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Bryant, Catherine, Carter, Alex, Chartrand, Katie, Wells, Jaclyn, and Rasheed, Michael (2018) Gladstone Healthy Harbour Partnership 2018 Report Card, ISP011: seagrass. Report. James Cook University, Cairns, QLD, Australia.

Bartelet, Henry A. (2017) Exploring the effectiveness of policies to reverse rapid coral reef degradation in the Philippines. In: Proceedings of the 35th International Conference of the System Dynamics Society. From: 35th International Conference of the System Dynamics Society, 16-20 July 2017, Cambridge, MA, USA.

Bakker, Jan P., Baas, Andreas C.W., Bartholdy, Jesper, Jones, Laurence, Ruessink, Gerben, Temmerman, Stijn, and van de Pol, Martijn (2016) Environmental impacts — coastal ecosystems. In: Quante, Markus, and Colijn, Franciscus, (eds.) North Sea Region Climate Change Assessment. Springer Nature, Cham, Switzerland, pp. 275-314.

Benzaken, Dominique (1992) Community attitudes towards crocodiles in northern Queensland: a case study of the role of socio-cultural factors in the management of dangerous wildlife. Masters (Research) thesis, James Cook University of North Queensland.

C

Cartwright, Paula J., Browne, Nicola K., Belton, David, Parnum, Iain, O'leary, Michael, Valckenaere, Jurgen, Fearns, Peter, and Lowe, Ryan (2023) Long-term spatial variations in turbidity and temperature provide new insights into coral-algal states on extreme/marginal reefs. Coral Reefs, 42. pp. 859-872.

Cartwright, Paula, Waltham, Nathan, and Iles, Jordan (2023) Southern Mackay Ambient Marine Water Quality Monitoring Program: Annual Report 2021-2022. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Carter, A., Allan, S., Scott, A., Rasheed, M.A., and Torres Strait Regional Authority Land and Sea Rangers (2023) Torres Strait Seagrass Report Card 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Cartwright, Paula, Waltham, Nathan, and Iles, Jordan (2023) Whitsunday Water Quality Monitoring Blueprint for Tourism Operators: Annual report 2021-2022. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Cleguer, C., and Marsh, H. (2023) An inventory of dugong aerial surveys in Australia. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Carter, Alex B., Coles, Rob, Jarvis, Jessie C., Bryant, Catherine V., Smith, Timothy M., and Rasheed, Michael A. (2023) A report card approach to describe temporal and spatial trends in parameters for coastal seagrass habitats. Scientific Reports, 13. 2295.

Canto, Marites Magno (2022) Benthic irradiance in the Great Barrier Reef: model, spatiotemporal patterns, and index of water quality. PhD thesis, James Cook University.

Chiaravalloti, Rafael Morais, Bolzan, Fábio, de Oliveira Roque, Fabio, and Biswas, Sumalika (2022) Ecosystem services in the floodplains: Socio-cultural services associated with ecosystem unpredictability in the Pantanal wetland, Brazil. Aquatic Ecosystem Health and Management, 25 (1). pp. 72-80.

Canning, Adam, and Duke, Norm (2022) Monitoring mangrove threats across the Torres Straits using remote-sensing. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Clough, B., Amir, A.A., Chong, V.C., Duke, N.C., Field, C.D., Kjerfve, B., Lee, S.Y., Sasekumar, A., Wong, S.C., Yong, J.W.H., and Gong, W.K. (2022) OBITUARY Dr. Ong Jin Eong (August 28, 1943–August 5, 2021). Estuarine, Coastal and Shelf Science, 266. 107746.

Cartwright, Paula, Iles, Jordan, and Waltham, Nathan (2022) Port of Abbot Point Ambient Marine Water Quality Monitoring Program: Annual Report 2021-2022. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Carter, Alex B., McKenna, Skye A., Rasheed, Michael A., Collier, Catherine, McKenzie, Len, Pitcher, Roland, and Coles, Rob (2021) Synthesizing 35 years of seagrass spatial data from the Great Barrier Reef World Heritage Area, Queensland, Australia. Limnology and Oceanography Letters, 6 (4). pp. 216-226.

Crook, Kevin Alexander (2020) Assessing the functional roles of rays in coastal sandflats. PhD thesis, James Cook University.

Carter, Alex, Chartrand, Katie, Wells, Jaclyn, and Rasheed, Michael (2019) Gladstone Healthy Harbour Partnership 2019 Report Card, ISP011: seagrass. Report. James Cook University, Cairns, QLD, Australia.

Chartrand, K., Wells, J., Carter, A., and Rasheed, M. (2019) Seagrasses in Port Curtis and Rodds Bay 2018: Annual long-term monitoring. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Carter, Alex, and Rasheed, Michael (2018) Mackay-Whitsunday 2017 Baseline Seagrass Survey: Marine Inshore South Zone. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Chartrand, K.M., Rasheed, M.A., and Carter, A.B. (2018) Seagrasses in Port Curtis and Rodds Bay 2017: annual long-term monitoring. Report. James Cook University, Cairns, QLD, Australia.

Carter, A.B., Collier, C., Rasheed, M.A., McKenzie, L., and Udy, J. (2018) A framework for defining seagrass habitat for the Great Barrier Reef, Australia. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Carter, Alex, Wells, Jaclyn, and Rasheed, Michael (2017) Gladstone Healthy Harbour Partnership 2017 Report Card, ISP011: seagrass. Report. James Cook University, Cairns, QLD, Australia.

Chartrand, Katie, Wells, Jaclyn, and Rasheed, Michael (2017) Long-Term Seagrass Monitoring in Port Curtis and Rodds Bay: Quarterly Permanent Transect Monitoring, 2009 to 2016 – Final Report. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Connolly, Rod, Dunn, Ryan, Flindt, Mogens, Jackson, Emma, Kristensen, Erik, McKenna, Skye, Olds, Andrew, Rasheed, Michael, Schlacher, Thomas, and York, Paul (2016) Assessment of the effects of foreshore nourishment and mitigation projects on seagrass ecosystems (SRMP-004). Report. Griffith University, Gold Coast, Australia.

D

Drane, Kezia, Huerlimann, Roger, Jones, Rhondda, Whelan, Anna, Sheehan, Madoc, Ariel, Ellen, and Kinobe, Robert (2025) Concordance in molecular methods for detection of antimicrobial resistance: A cross sectional study of the influent to a wastewater plant. Journal of Microbiological Methods, 228. 107069.

Duke, Norman, and Lee, Shing Yip (2024) 2.4. The diversity of mangroves. Towards an authoritative list of the world’s mangrove plants. Report Section. Global Mangrove Alliance.

Duke, Norman C., Canning, Adam D., and Mackenzie, Jock R. (2024) More intense severe tropical cyclones in recent decades cause greater impacts on mangroves bordering Australia’s Great Barrier Reef. In: Wolanski, Eric, and Kingsford, Michael J., (eds.) Coral Reefs: Physical and Biological Links in the Great Barrier Reef. CRC Press, Boca Raton, Florida, USA, pp. 226-253.

Drane, Kezia, Sheehan, Madoc, Whelan, Anna, Ariel, Ellen, and Kinobe, Robert (2024) The Role of Wastewater Treatment Plants in Dissemination of Antibiotic Resistance: Source, Measurement, Removal and Risk Assessment. Antibiotics, 13 (7). 668.

Duke, Norman C., Virly, Sabrina, and Tracey, Dieter (2023) New Caledonian mangroves: A treasure to protect. MangroveWatch Publications, Currumbin, Queensland, Australia.

Daly, Ryan, Venables, Stephanie K., Rogers, Toby D., Filmalter, John D., Hempson, Tessa N., Murray, Taryn S., Hussey, Nigel E., Silva Leal, Isabela, Pereira, Marcos A.M., Mann, Bruce Q., Nharreluga, Bilardo A.S., and Cowley, Paul D. (2023) Persistent transboundary movements of threatened sharks highlight the importance of cooperative management for effective conservation. Marine Ecology-Progress Series, 720. pp. 117-131.

Duarte de Paula Costa, Micheli, Adame, Maria Fernanda, Bryant, Catherine V., Hill, Jack, Kellaway, Jeffrey J., Lovelock, Catherine E., Ola, Anne, Rasheed, Michael A., Salinas, Christian, Serrano, Oscar, Waltham, Nathan, York, Paul H., Young, Mary, and Macreadie, Peter (2023) Quantifying blue carbon stocks and the role of protected areas to conserve coastal wetlands. Science of the Total Environment, 874. 162518.

Dean, Angela J., Eberhard, Rachel, Baresi, Umberto, Coggan, Anthea, Deane, Felicity, Hamman, Evan, Helmstedt, Kate J., Loechel, Barton, Jarvis, Diane, Mayfield, Helen, Stevens, Lillian, Taylor, Bruce, and Vella, Karen (2023) Scrutinizing the impact of policy instruments on adoption of agricultural conservation practices using Bayesian expert models. Conservation Letters, 16 (6). e12988.

Denniston, Rhawn F., Ummenhofer, Caroline C., Emanuel, Kerry, Ingrosso, Roberto, Pausata, Francesco S.R., Wanamaker, Alan D., Lachniet, Matthew S., Carr, Kenneth T., Asmerom, Yemane, Polyak, Victor J., Nott, Jonathan, Zhang, Wei, Villarini, Gabriele, Cugley, John, Brooks, Darren, Woods, David, and Humphreys, William F. (2023) Sensitivity of northwest Australian tropical cyclone activity to ITCZ migration since 500 CE. Science Advances, 9 (2). eadd9832.

De Valck, Jeremy, Jarvis, Diane, Coggan, Anthea, Schirru, Ella, Pert, Petina, Graham, Victoria, and Newlands, Maxine (2023) Valuing ecosystem services in complex coastal settings: An extended ecosystem accounting framework for improved decision-making. Marine Policy, 155. 105761.

Duke, Norman (2022) Climate change killed 40 million Australian mangroves in 2015. Here’s why they’ll probably never grow back. The Conversation, 28 July 2022.

Duke, Norman Clive, Mackenzie, Jock R., Canning, Adam, Hutley, Lindsay B., Bourke, Adam J., Kovacs, John, Cormier, Riley, Staben, Grant, Lymburner, Leo, and Ai, Emma (2022) ENSO-driven extreme oscillations in mean sea level destabilise critical shoreline mangroves—An emerging threat. PLOS Climate, 1 (8). e0000037.

Duarte de Paula Costa, Micheli, Lovelock, Catherine E., Waltham, Nathan J., Young, Mary, Adame, Maria F., Bryant, Catherine V., Butler, Don, Green, David, Rasheed, Michael A., Salinas, Cristian, Serrano, Oscar, York, Paul H., Whitt, Ashley A., and Macreadie, Peter I. (2021) Current and future carbon stocks in coastal wetlands within the Great Barrier Reef catchments. Global Change Biology, 27 (14). pp. 3257-3271.

Duke, Norman C., Hutley, Lindsay B., Mackenzie, Jock R., and Burrows, Damien (2021) Processes and factors driving change in mangrove forests: an evaluation based on the mass dieback event in Australia’s Gulf of Carpentaria. In: Canadell, Josep G., and Jackson, Robert B., (eds.) Ecosystem Collapse and Climate Change. Ecological Studies, 241 . Springer International Publishing, Cham, Switzerland, pp. 221-264.

de Keukelaere, Liesbeth, Sterckx, Sindy, Adriaensen, Stefan, Bhatia, Nitin, Monbaliu, Jaak, Toorman, Erik, Cattrijsse, André, Lebreton, Carole, Van der Zande, Dimitry, and Knaeps, Els (2020) Coastal turbidity derived from PROBA-V global vegetation satellite. Remote Sensing, 12 (3). 463.

Dahdouh-guebas, Farid, Ajonina, Gordon N., Amir, A. Aldrie, Andradi-brown, Dominic A., Aziz, Irfan, Balke, Thorsten, Barbier, Edward B., Cannicci, Stefano, Cragg, Simon M., Cunha-Lignon, Marília, Curnick, David J., Duarte, Carlos M., Duke, Norman C., Endsor, Charlie, Fratini, Sara, Feller, Ilka C., Fromard, François, Hugé, Jean, Huxham, Mark, Kairo, James G., Kajita, Tadashi, Kathiresan, Kandasamy, Koedam, Nico, Lee, Shing Yip, Lin, Hsing-Juh, Mackenzie, Jock R., Mangora, Mwita M., Marchand, Cyril, Meziane, Tarik, Minchinton, Todd E., Pettorelli, Nathalie, Polanía, Jaime, Polgar, Gianluca, Poti, Meenakshi, Primavera, Jurgenne, Quarto, Alfredo, Rog, Stefanie M., Satyanarayana, Behara, Schaeffer-Novelli, Yara, Spalding, Mark D., Van der Stocken, Tom, Wodehouse, Dominic, Yong, Jean W.H., Zimmer, Martin, and Friess, Daniel A. (2020) Public perceptions of mangrove forests matter for their conservation. Frontiers in Marine Science, 7. 603651.

Davey, P.A., and Rasheed, M.A. (2018) Port of Abbot Point Long-Term Seagrass Monitoring Program - 2017: A Report for North Queensland Bulk Ports Corporation. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Davies, Jaclyn, and Rasheed, Michael (2016) Port of Townsville Annual Seagrass Monitoring: September 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

E

Eurich, Jacob G., Friedman, Whitney R., Kleisner, Kristin M., Zhao, Lily Z., Free, Christopher M., Fletcher, Meghan, Mason, Julia G., Tokunaga, Kanae, Aguion, Alba, Dell'Apa, Andrea, Dickey-Collas, Mark, Fujita, Rod, Golden, Christopher D., Hollowed, Anne B., Ishimura, Gakushi, Karr, Kendra A., Kasperski, Stephen, Kisara, Yuga, Lau, Jacqueline D., Mangubhai, Sangeeta, Osman, Layla, Pecl, Gretta T., Schmidt, Jörn O., Allison, Edward H., Sullivan, Patrick J., Cinner, Joshua E., Griffis, Roger B., Mcclanahan, Timothy R., Stedman, Richard C., and Mills, Katherine E. (2024) Diverse pathways for climate resilience in marine fishery systems. Fish and Fisheries, 25 (1). pp. 38-59.

Ebner, Brendan C. (2021) Yellowfin bream, Acanthopagrus australis, reorientate individual shells in search of prey. Food Webs, 29. e00216.

F

Ford-Learner, Nicholas, Addison, Jane, and Smallhorn-West, Patrick (2024) Conservation and human rights: The public commitments of international conservation organizations. Conservation Letters. e13035. (In Press)

Fronkova, Lenka, Greenwood, Naomi, Martinez, Roi, Graham, Jennifer A., Harrod, Richard, Graves, Carolyn A., Devlin, Michelle J., and Petus, Caroline (2022) Can Forel–Ule Index Act as a Proxy of Water Quality in Temperate Waters? Application of Plume Mapping in Liverpool Bay, UK. Remote Sensing, 14. 2375.

G

Godinez-Espinosa, Sara, Raoult, Vincent, Smith, Timothy M., Gaston, Troy F., and Williamson, Jane E. (2023) Functional roles of coral reef primary producers examined with stable isotopes. Marine and Freshwater Research, 74 (7). pp. 601-613.

Graham, V., Mann, M., Warcon, L., James, H.G., Johnson, M., Watts, K., Hatfield, K., Mann, A., Jarvis, D., Coggan, A., and Darumbal TUMRA working Group (2023) Report on the SEABORNE workshop for Darumbal. Report. CSIRO, Brisbane, QLD, Australia.

Grantham, R., Lau, J., Mills, D.J., and Cumming, G.S. (2022) Social and temporal dynamics mediate the distribution of ecosystem service benefits from a small-scale fishery. Ecosystems and People, 18 (1). pp. 15-30.

Garzon, Francesco, Willliams, Collin T., Cochran, Jesse E.M., Tanabe, Lyndsey, Abdulla, Ameer, Berumen, Michael L., Habis, Thamer, Marshall, Paul A., Rodrigue, Mattie, and Hawkes, Lucy A. (2022) A multi-method characterization of Elasmobranch & Cheloniidae communities of the north-eastern Red Sea and Gulf of Aqaba. PLoS ONE, 18 (9). e0275511.

Glamore, William, Rayner, Duncan, Ruprecht, Jamie, Sadat-Noori, Mahmood, and Khojasteh, Danial (2021) Eco-hydrology as a driver for tidal restoration: Observations from a Ramsar wetland in eastern Australia. PLoS ONE, 16 (8). e0254701.

Grorud-Colvert, Kirsten, Sullivan-Stack, Jenna, Roberts, Callum, Constant, Vanessa, Horta e Costa, Barbara, Pike, Elizabeth P., Kingston, Naomi, Laffoley, Dan, Sala, Enric, Claudet, Joachim, Friedlander, Alan M., Gill, David A., Lester, Sarah E., Day, Jon C., Gonçalves, Emanuel J., Ahmadia, Gabby N., Rand, Matt, Villagomez, Angelo, Ban, Natalie C., Gurney, Georgina G., Spalding, Ana K., Bennett, Nathan J., Briggs, Johnny, Morgan, Lance E., Moffitt, Russell, Deguignet, Marine, Pikitch, Ellen K., Darling, Emily S., Jessen, Sabine, Hameed, Sarah O., Di Carlo, Giuseppe, Guidetti, Paolo, Harris, Jean M., Torre, Jorge, Kizilkaya, Zafer, Agardy, Tundi, Cury, Philippe, Shah, Nirmal J., Sack, Karen, Cao, Ling, Fernandez, Miriam, and Lubchenco, Jane (2021) The MPA guide: a framework to achieve global goals for the ocean. Science, 373 (6560). eabf0861.

Grantham, Ruby W. (2021) Seasonal dynamics in ecosystem services: a case study of small-scale fisheries. PhD thesis, James Cook University.

Grantham, Ruby, Álvarez-Romero, Jorge G., Mills, David J., Rojas, Cristian, and Cumming, Graeme S. (2021) Spatiotemporal determinants of seasonal gleaning. People and Nature, 3 (2). pp. 376-390.

Georgeson, L., Rigby, C. L., Emery, T. J., Fuller, M., Hartog, J., Williams, A. J., Hobday, A. J., Duffy, C. A. J., Simpfendorfer, C. A., Okuda, T., Stobutzki, I. C., and Nicol, S. J. (2020) Ecological risks of demersal fishing on deepwater chondrichthyan populations in the Southern Indian and South Pacific Oceans. ICES Journal of Marine Science, 77 (5). pp. 1711-1727.

H

Hall, April, Cameron, Darren, and Kingsford, Michael (2022) Prohibiting spearfishing boosts conservation outcomes for partially protected areas. Biological Conservation, 272. 109662.

Hardesty, Britta Denise, Roman, Lauren, Duke, Norman C., Mackenzie, Jock R., and Wilcox, Chris (2021) Abandoned, lost and discarded fishing gear ‘ghost nets’ are increasing through time in Northern Australia. Marine Pollution Bulletin, 173. 112959.

Hewitt, Daniel E., Taylor, Matthew D., Raoult, Vincent, Smith, Timothy M., and Gaston, Troy (2021) Diet-tissue discrimination and turnover of δ 13 C and δ 15 N in muscle tissue of a penaeid prawn. Rapid Communications in Mass Spectrometry, 35 (19). e9167.

Hall, April E., and Kingsford, Michael J. (2021) Habitat type and complexity drive fish assemblages in a tropical seascape. Journal of Fish Biology, 99 (4). pp. 1364-1379.

Hewitt, Daniel E., Smith, Timothy M., Raoult, Vincent, Taylor, Matthew D., and Gaston, Troy F. (2020) Stable isotopes reveal the importance of saltmarsh-derived nutrition for two exploited penaeid prawn species in a seagrass dominated system. Estuarine, Coastal and Shelf Science, 236. 106622.

Hannan, Kelly D., Munday, Philip L., and Rummer, Jodie L. (2020) The effects of constant and fluctuating elevated pCO(2) levels on oxygen uptake rates of coral reef fishes. Science of the Total Environment, 741. 140334.

Hutchinson, N., and Williams, Gray A. (2003) An assessment of variation in molluscan grazing pressure on Hong Kong rocky shores. Marine Biology, 142. pp. 495-507.

J

Jahanbakht, Mohammad, Rahimi Azghadi, Mostafa, and Waltham, Nathan J. (2023) Semi-supervised and weakly-supervised deep neural networks and dataset for fish detection in turbid underwater videos. Ecological Informatics, 78. 102303.

Jones, Karina, Limpus, Colin J., Brodie, Jon, Jones, Rhondda, Read, Mark, Shum, Edith, Bell, Ian P., and Ariel, Ellen (2022) Spatial distribution of fibropapillomatosis in green turtles along the Queensland coast and an investigation into the influence of water quality on prevalence. Conservation Science and Practice, 4 (8). e12755.

K

Krause, Johannes R., Lefcheck, Jonathan S., Orth, Robert J., Patrick, Christopher J., Lizcano-Sandoval, Luis, McKenzie, Len J., Reshitnyk, Luba, Manning, Faye, Monteith, Zachary L., Hessing-Lewis, Margot, York, Paul H., Rasheed, Michael A., Carter, Alex, McKenna, Skye, Vaudrey, Jamie M.P., Connolly, Rod M., Fourqurean, James W., and Duffy, Emmett (2024) Diverging trends of coastal ecosystem extent and condition: global seagrass monitoring highlights the need for coordinated data collection at multiple scales. In: ISBW15 & WSC2024 Book of Abstracts. 343. From: ISBW 2024: International Seagrass Biology Workshop, 17-21 June 2024, Naples, Italy.

Khojasteh, Danial, Haghani, Milad, Nicholls, Robert, Moftakhari, Hamed, Sadat Noori, Mahmood, Mach, Katharine J., Fagherazzi, Sergio, Vafeidis, Athanasios T., Barbier, Edward, Shamsipour, Abbas, and Glamore, William (2023) The evolving landscape of sea-level rise science from 1990 to 2021. Communications Earth & Environment, 4. 257.

Kophamel, Sara, Illing, Bjorn, Ariel, Ellen, Ward, Leigh C., Mendez, Diana, Skerratt, Lee F., Hamann, Mark, Difalco, Morgan, and Munns, Suzanne (2021) Global conservation implications for health assessment studies in non-captive wildlife. In: [Presented at CUENCA 2021]. 51. p. 178. From: CUENCA 2021: 69th Wildlife Disease Association (WDA)/14th European Wildlife Disease Association (EWDA) Joint Virtual Conference, 30 August - 2 September 2021, Online.

Kalidin, Bhavnah Komul, Mattone, Carlo, and Sheaves, Marcus (2020) Barriers to effective monitoring and evaluation of small-scale fisheries in small island developing states: an example from Mauritius. Marine Policy, 118. 103845.

Kuskopf, L., Sheehan, M., and Whelan, A. (2020) Contaminants of emerging concern: developing a sampling and analysis quality plan for the Cleveland Bay Sewage Treatment Plant. Water e-journal, 5 (3).

L

Lukman, Kevin Muhamad, Rifai, Husen, McKenzie, Len, Risandi, Johan, Hernawan, Udhi Eko, Sjafrie, Nurul Dhewani M., Rahmadi, Puji, Triyono, Suryawati, Siti Hajar, Uchiyama, Yuta, Fortes, Miguel D., Yulianda, Fredinan, Kurniawan, Fery, Hidayat, Rahman, and Suraji, S. (2023) Strategies to Develop Sustainable Seagrass-Associated Tourism in Indonesia. Coastal Management, 51 (5-6). pp. 308-318.

Lambert, Victoria, Bainbridge, Zoe T., Collier, Catherine, Lewis, Stephen E., Adams, Matthew P., Carter, Alex, Saunders, Megan I., Brodie, Jon, Turner, Ryan D.R., Rasheed, Michael A., and O'Brien, Katherine R. (2021) Connecting targets for catchment sediment loads to ecological outcomes for seagrass using multiple lines of evidence. Marine Pollution Bulletin, 169. 112494.

Lal, Alvin, and Datta, Bithin (2021) Robust ensemble modeling paradigm for groundwater salinity predictions in complex aquifer systems. In: Pande, Chaitanya Baliram, and Moharir, Kanak N., (eds.) Groundwater Resources Development and Planning in the Semi-Arid Region. Springer, Cham, Switzerland, pp. 53-72.

Lambert, V., Collier, C., Brodie, J., Adams, M.P., Baird, M., Bainbridge, Z., Carter, A., Lewis, S., Rasheed, M., Saunders, M., and O'Brien, K. (2020) Connecting Sediment Load Targets to Ecological Outcomes for Seagrass. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Lapointe, Marie, Gurney, Georgina G., and Cumming, Graeme S. (2020) Urbanization alters ecosystem service preferences in a Small Island Developing State. Ecosystem Services, 43. 101109.

Linssen, Hans, van de Pol, Martijn, Allen, Andrew, Jans, Mitzi, Ens, Bruno J., Krijgsveld, Karen, Frauendorf, Magali, and Van Der Kolk, Henk-Jan (2019) Disturbance increases high tide travel distance of a roosting shorebird but only marginally affects daily energy expenditure. Avian Research, 10. 31.

Lambert, V., Adams, M.P., Collier, C., Carter, A., Saunders, M., Brodie, J., Bainbridge, Z., Rasheed, M., Turner, R., and O'Brien, K.R. (2019) Towards ecologically relevant targets: impact of flow and sediment discharge on seagrass communities in the Great Barrier Reef. In: Proceedings of the 22nd International Congress on Modelling and Simulation. pp. 624-630. From: 23rd International Congress on Modelling and Simulation, 1-6 December 2019, Canberra, ACT, Australia.

M

McKenna, S.A., Concannon, T.G., Van de Wetering, C., and Rasheed, M.A. (2024) Bowen - McCanes Bay / Port Dennison Seagrass Assessments June 2024. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S., and Van de Wetering, C. (2024) Marine Benthic Habitat Assessment – Half Tide Tug Harbour, December 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Morais, Juliano, Tebbett, Sterling B., Morais Araujo, Renato A., and Bellwood, David R. (2024) Natural recovery of corals after severe disturbance. Ecology Letters, 27 (1). e14332.

McKenna, S.A., Concannon, T., Reason, C.L., and Rasheed, M.A. (2024) Port of Abbot Point Long-Term Seagrass Monitoring Program 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S.A., Concannon, T.G., and Hoffmann, L. (2024) Port of Townsville Seagrass Monitoring Program: Brief Report May 2024. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Morais, Juliano (2024) The population dynamics and functions of corals on post-bleach coral reefs. PhD thesis, James Cook University.

Miller, Michaela E., Motti, Cherie A., Hamann, Mark, and Kroon, Frederieke J. (2023) Assessment of microplastic bioconcentration, bioaccumulation and biomagnification in a simple coral reef food web. Science of the Total Environment, 858. 159615.

Marangon, Emma (2023) Coral reef symbioses under a changing climate: an integrative approach. PhD thesis, James Cook University.

McKenna, S., and Firby, L. (2023) Marine Benthic Habitat Assessment – Hay Point Coal Terminal Berth 1 Extension, January 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S., and Firby, L. (2023) Marine Plant Survey – Northern Breakwater Rehabilitation Project – Port of Mackay, January 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S.A. (2023) Port of Townsville Channel Upgrade Project: Capital Dredge Footprint Seagrass Survey – Updated August 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S. (2023) Port of Townsville Eastern Breakwater Marine Plant Assessment. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S., Murphy, T., and Hoffmann, L. (2023) Port of Townsville Seagrass Monitoring Program 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

McKenna, S.A., and Proctor, M.R. (2023) Port of Townsville Seagrass Monitoring Program: Brief Report 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Malerba, Martino E., Duarte de Paula Costa, Micheli, Friess, Daniel A., Schuster, Lukas, Young, Mary A., Lagomasimo, David, Serrano, Oscar, Hickey, Sharyn M., York, Paul H., Rasheed, Michael, Lefcheck, Jonathan, Radford, Ben, Atwood, Trisha, Ierodiaconou, Daniel, and Macreadie, Peter (2023) Remote sensing for cost-effective blue carbon accounting. Earth-Science Reviews, 238. 104337.

McKenna, S., Carter, A., Smit, N., McMahon, K., and Coles, R. (2023) An inventory of northern Australia’s seagrass data: research report Project 1.32a. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Miller, Michaela E. (2022) Ecological fate of microplastics in a tropical marine environment. PhD thesis, James Cook University.

Mattone, Carlo, Bradley, Michael, Barnett, Adam, Konovalov, Dmitry A., and Sheaves, Marcus (2022) Environmental conditions constrain nursery habitat value in Australian sub-tropical estuaries. Marine Environmental Research, 175. 105568.

Marsh, Helene, Albouy, Camille, Arraut, Eduardo, Castelblanco-Martinez, Delma Nataly, Collier, Catherine, Edwards, Holly, James, Cassandra, and Keith-Diagne, Lucy (2022) How Might Climate Change Affect the Ethology and Behavioral Ecology of Dugongs and Manatees? In: Marsh, Helene, (ed.) Ethology and Behavioral Ecology of Sirenia. Ethology and Behavioral Ecology of Marine Mammals . Springer, Cham, Switzerland, pp. 351-406.

McKenna, Skye, and Hoffmann, Luke (2022) Marine Plant assessment of the Townsville Breakwater Duck Pond - May 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

McKenna, S.A., Smith, T.M., Reason, C.L., and Rasheed, M.A. (2021) Port of Weipa long-term seagrass monitoring program: 2000 - 2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

March, D., Ariel, E., Blyde, D., Christidis, L., and Kelaher, B. P. (2021) Influence of exercise and fasting on blood parameters in juvenile green turtles (Chelonia mydas): implications for health assessments. Comparative Exercise Physiology, 17 (2). pp. 181-187.

McClanahan, Timothy R., Darling, Emily S., Mangubhai, Sangeeta, Gurney, Georgina G., Lestari, W. Peni, Fox, Margaret, Jupiter, Stacy, Yulistianti, Dhila A., Muthiga, Nyawira A., and D’agata, Stephanie (2021) Views of management effectiveness in tropical reef fisheries. Fish and Fisheries, 22 (5). pp. 1085-1104.

Mouillot, David, Velez, Laure, Maire, Eva, Masson, Alizée, Hicks, Christina C., Moloney, James, and Troussellier, Marc (2020) Global correlates of terrestrial and marine coverage by protected areas on islands. Nature Communications, 11. 4438.

MacNeil, M. Aaron, Chapman, Demian D., Heupel, Michelle, Simpfendorfer, Colin A., Heithaus, Michael, Meekan, Mark, Harvey, Euan, Goetze, Jordan, Kiszka, Jeremy, Bond, Mark E., Currey-Randall, Leanne M., Speed, Conrad W., Sherman, C. Samantha, Rees, Matthew J., Udyawer, Vinay, Flowers, Kathryn I., Clementi, Gina, Valentin-Albanese, Jasmine, Gorham, Taylor, Adam, M. Shiham, Ali, Khadeeja, Pina-Amargós, Fabián, Angulo-Valdés, Jorge A., Asher, Jacob, Barcia, Laura García, Beaufort, Océane, Benjamin, Cecilie, Bernard, Anthony T.F, Berumen, Michael L., Bierwagen, Stacy, Bonnema, Erika, Bown, Rosalind M.K., Bradley, Darcy, Brooks, Edd, Brown, J. Jed, Buddo, Dayne, Burke, Patrick, Cáceres, Camila, Cardeñosa, Diego, Carrier, Jeffrey C., Caselle, Jennifer E., Charloo, Venkatesh, Claverie, Thomas, Clua, Eric, Cochran, Jesse E.M., Cook, Neil, Cramp, Jessica, D'Alberto, Brooke, de Graaf, Martin, Dornhege, Mareike, Estep, Andy, Fanovich, Lanya, Farabough, Naomi F., Fernando, Daniel, Flam, Anna L., Floros, Camilla, Fourqurean, Virginia, Garla, Ricardo, Gastrich, Kirk, George, Lachlan, Graham, Rory, Guttridge, Tristan, Hardenstine, Royale S., Heck, Stephen, Henderson, Aaron C., Hertler, Heidi, Hueter, Robert, Johnson, Mohini, Jupiter, Stacy, Kasana, Devanshi, Kessel, Steven T., Kiilu, Benedict, Kirata, Taratu, Kuguru, Baraka, Kyne, Fabian, Langlois, Tim, Lédée, Elodie J.I., Lindfield, Steve, Luna-Acosta, Andrea, Maggs, Jade, Manjaji-Matsumoto, B. Mabel, Marshall, Andrea, Matich, Philip, McCombs, Erin, McLean, Dianne, Meggs, Llewelyn, Moore, Stephen, Mukherji, Sushmita, Murray, Ryan, Kaimuddin, Muslimin, Newman, Stephen J., Nogués, Josep, Obota, Clay, O'Shea, Owen, Osuka, Kennedy, Papastamatiou, Yannis P., Perera, Nishan, Peterson, Bradley, Ponzo, Alessandro, Prasetyo, Andhika, Quamar, L.M. Sjamsul, Quinlan, Jessica, Ruiz-Abierno, Alexei, Sala, Enric, Samoilys, Melita, Schärer-Umpierre, Michelle, Schlaff, Audrey, Simpson, Nikola, Smith, Adam N.H., Sparks, Lauren, Tanna, Akshay, Torres, Rubén, Travers, Michael J., van Zinnicq Bergmann, Maurits, Vigliola, Laurent, Ward, Juney, Watts, Alexandra M., Wen, Colin, Whitman, Elizabeth, Wirsing, Aaron J., Wothke, Aljoscha, Zarza-Gonzâlez, Esteban, and Cinner, Joshua E. (2020) Global status and conservation potential of reef sharks. Nature, 583. pp. 801-803.

McKenna, S., Chartrand, K., van de Wetering, C., Wells, J., Carter, A., and Rasheed, M. (2020) Port of Townsville Seagrass Monitoring Program: 2019. Report. James Cook University, Cairns, QLD, Australia.

Magno-Canto, Marites M., McKinna, Lachlan I.W., Robson, Barbara J., and Fabricius, Katharina E. (2019) Model for deriving benthic irradiance in the Great Barrier Reef from MODIS satellite imagery. Optics Express, 27 (20). A1350-A1371.

McKenna, S.A., Rasheed, M.A., Reason, C.L., Wells, J.N., and Hoffmann, L.R. (2019) Port of Abbot Point Long-Term Seagrass Monitoring Program - 2018. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

McKenna, S.A., Wells, J.N., van de Wetering, C., and Rasheed, M.A. (2019) Port of Townsville Bi-annual Seagrass Monitoring Program, Interim Brief Report: April/May 2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

McKenna, Skye, and Rasheed, Michael (2019) Port of Weipa long-term seagrass monitoring program, 2000 - 2018. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

McKenna, S.A., and Rasheed, M.A. (2019) Port of Weipa post wet season seagrass habitat update: May 2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

McKenna, S.A., van de Wetering, C., Rasheed, M.A., and Wells, J.N. (2019) Sep/Oct 2019: Port of Townsville Seagrass Monitoring Program: Interim Report. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

McKenna, Skye, Rasheed, Michael, Carter, Alex, Chartrand, Katie, Wells, Jaclyn, York, Paul, Reason, Carissa, Bryant, Catherine, and Coles, Robert (2019) Strategic long-term monitoring of coastal habitats in high risk areas – a successful strategy for environmental protection and facilitating industry. In: Abstracts from the 2019 Annual Conference of the Australia Marine Sciences Association. p. 147. From: UNSPECIFIED, 7-11 July 2019, Fremantle, WA, Australia.

McKenna, Skye, Carter, Alex, Sozou, Alysha, and Rasheed, Michael (2017) Port of Weipa long-term seagrass monitoring program, 2000 - 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

McKenna, S.A., Sozou, A.M., Scott, E.L., and Rasheed, M.A. (2016) Annual Seagrass Monitoring in the Mackay-Hay Point Region – 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Morgan, Damian (2016) Development of a method to estimate and predict beach visitation. Tourism in Marine Environments, 12 (1). pp. 69-77.

McKenna, Skye, Sozou, Alysha, Scott, Emma, and Rasheed, Michael (2016) Port of Abbot Point Long-Term Seagrass Monitoring: Annual Report 2014-2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

N

Nay, Tiffany J., Johansen, Jacob L., Rummer, Jodie L., Steffensen, John F., Pratchett, Morgan S., and Hoey, Andrew S. (2020) Habitat complexity influences selection of thermal environment in a common coral reef fish. Conservation Physiology, 8 (1). coaa070.

P

Pearson, Richard G., Davis, Aaron M., and Birtles, R. Alastair (2022) Enhancing whole-of-river conservation. Marine and Freshwater Research, 73 (6). pp. 729-741.

Petus, Caroline, Waterhouse, Jane, Tracey, Dieter, Wolanski, Eric, and Brodie, Jon (2022) Using Optical Water-Type Classification in Data-Poor Water Quality Assessment: A Case Study in the Torres Strait. Remote Sensing, 14 (9). 2212.

Pearson, Richard G., Connolly, Niall M., Davis, Aaron M., and Brodie, Jon E. (2021) Fresh waters and estuaries of the Great Barrier Reef catchment: effects and management of anthropogenic disturbance on biodiversity, ecology and connectivity. Marine Pollution Bulletin, 166. 112194.

Pearson, Ryan M., Collier, Catherine J., Brown, Christopher J., Rasheed, Michael A., Bourner, Jessica, Turschwell, Mischa P., Sievers, Michael, and Connolly, Rod M. (2021) Remote estimation of aquatic light environments using machine learning: a new management tool for submerged aquatic vegetation. Science of the Total Environment, 782. 146886.

Pisapia, Chiara, Edmunds, Peter J., Moeller, Holly V., Riegel, Bernhard, McWilliam, Mike, Wells, Christopher D., and Pratchett, Morgan S. (2020) Projected shifts in coral size structure in the Anthropocene. Advances in Marine Biology, 87 (1). pp. 31-60.

R

Rasheed, M.A., Van de Wetering, C., York, P., and McKenna, S.A. (2024) Annual Seagrass Monitoring in the Mackay – Hay Point Region 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia. (Unpublished)

Remmers, Tiny, Grech, Alana, Roelfsema, Chris, Gordon, Sophie, Lechene, Marine, and Ferrari, Renata (2024) Close-range underwater photogrammetry for coral reef ecology: a systematic literature review. Coral Reefs, 43. pp. 35-52.

Renshaw, Samantha, Hammerschlag, Neil, Gallagher, Austin J., Lubitz, Nicolas, and Sims, David W. (2023) Global tracking of shark movements, behaviour and ecology: A review of the renaissance years of satellite tagging studies, 2010–2020. Journal of Experimental Marine Biology and Ecology, 560. 151841.

Rankin, Caleb, Gaston, Troy, Sadat-Noori, Mahmood, Glamore, William, Morton, Jason, and Chalmers, Anita (2023) Innovative tidal control successfully promotes saltmarsh restoration. Restoration Ecology, 31 (7). e13774.

Reason, C., McKenna, S., and Rasheed, M. (2023) Port of Abbot Point Long-Term Seagrass Monitoring Program 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Reason, C., York, P., and Rasheed, M. (2023) Seagrass Habitat of Cairns Harbour and Trinity Inlet: Annual Monitoring Report 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Reason, C., Hoffmann, L., McKenna, S., and Rasheed, M. (2023) Seagrass Habitat of Cairns Harbour and Trinity Inlet: Annual Monitoring Report 2023. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Reason, Carissa, York, Paul, and Rasheed, Michael (2023) Seagrass Habitat of Mourilyan Harbour: Annual Monitoring Report 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Rajan, P., Duke, N.C., Mathew, S., and Cherian, E. (2022) Bruguiera × rhynchopetala (Rhizophoraceae) newly reported in India, far west of south-east Asian, east Asian and western Pacific regions. Rheedea, 32 (2). pp. 109-119.

Reason, C.L., Wilkinson, J., and Carter, A.B. (2022) Eastern Torres Strait intertidal benthic survey: Ugar, Campbell and Nepean Islands. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Rasheed, Michael, van de Wetering, Chris, and Carter, Alex (2022) Mackay-Whitsunday-Isaac Seagrass Monitoring 2017-2021: Marine Inshore South Zone (Clairview). Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Reason, C.L., Smith, T., McKenna, S.A., and Rasheed, M.A. (2022) Port of Weipa long-term seagrass monitoring program: 2000 - 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Reason, C.L., McKenna, S.A., and York, P.H. (2021) Cairns - Marine Plant Assessment for Smith's Creek and Wharf 8 potential Port Infrastructure Sites - June 2021. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Reason, C.L., Smith, T.M., and Rasheed, M.A. (2021) Seagrass habitat of Cairns Harbour and Trinity Inlet: Cairns Shipping Development Program and Annual Monitoring Report 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Reason, C.L., York, P.H., and Rasheed, M.A. (2021) Seagrass habitat of Mourilyan Harbour: Annual Monitoring Report – 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Roelfsema, Chris M., Lyons, Mitchell, Murray, Nicholas, Kovacs, Eva M., Kennedy, Emma, Markey, Kathryn, Borrego-Acevedo, Rodney, Ordoñez Alvarez, Alexandra, Say, Chantel, Tudman, Paul, Roe, Meredith, Wolff, Jeremy, Traganos, Dimosthenis, Asner, Gregory P., Bambic, Brianna, Free, Brian, Fox, Helen E., Lieb, Zoe, and Phinn, Stuart R. (2021) Workflow for the generation of expert-derived training and validation data: a view to global scale habitat mapping. Frontiers in Marine Science, 8. 643381.

Rasheed, Michael, Hoffmann, Luke, Reason, Carissa, and McKenna, Skye (2020) Port of Weipa long-term seagrass monitoring program, 2000-2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Reason, C.L., McKenna, S.A., and Rasheed, M.A. (2020) Seagrass habitat of Cairns Harbour and Trinity Inlet: Cairns Shipping Development Program and Annual Monitoring Report 2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Rasheed, Michael, Chartrand, Katie, Collier, Catherine, Carter, Alex, McKenna, Skye, Honchin, Carol, and Fletcher, Adam (2019) Developing light thresholds for tropical seagrasses and applying them in real time management of dredging. In: Abstracts from the 2019 Annual Conference of the Australia Marine Sciences Association. p. 173. From: AMSA 2019: Annual Conference of the Australia Marine Sciences Association, 7-11 July 2019, Fremantle, WA, Australia.

Rasheed, Michael, Reason, Carissa, and Wells, Jaclyn (2019) Seagrass habitat of Cairns Harbour and Trinity Inlet: Annual Monitoring Report 2018. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Reason, Carissa, Shepherd, Lloyd, Sankey, Tonia, Sozou, Alysha, Rasheed, Michael, and Coles, Rob (2018) Sampling for Asian green mussels in Weipa port and Pera Heads: 2017-2018. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Reason, Carissa, and Rasheed, Michael (2018) Seagrass habitat of Cairns Harbour and Trinity Inlet: Annual Monitoring Report 2017. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Reason, Carissa, and Rasheed, Michael (2018) Seagrass habitat of Mourilyan Harbour: Annual Monitoring Report – 2017. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Reason, C.L., Rasheed, M.A., Carter, A.B., and Jarvis, J.C. (2017) Port Curtis Seagrass Seed Bank Density and Viability Studies - final report. Report. James Cook University, Cairns, QLD, Australia.

Reason, Carissa, Sozou, Alysha, York, Paul, and Rasheed, Michael (2017) Seagrass habitat of Mourilyan Harbour: Annual Monitoring Report – 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Rasheed, M.A., Wells, J.N., and Carter, A.B. (2017) Seagrasses in Port Curtis and Rodds Bay 2016: annual long-term monitoring. Report. James Cook University, Cairns, QLD, Australia.

Rasheed, M.A., O'Grady, D., and Scott, E. (2016) Dugong Feeding Ecology and Habitat Use on Intertidal Banks of Port Curtis and Rodds Bay – Interim Progress Report 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

S

Sharan, Ashneel, Lal, Alvin, and Datta, Bithin (2023) Evaluating the impacts of climate change and water over-abstraction on groundwater resources in Pacific island country of Tonga. Groundwater for Sustainable Development, 20. 100890.

Saint-Amand, A., Grech, A., Choukroun, S., and Hanert, E. (2022) Quantifying the environmental impact of a major coal mine project on the adjacent Great Barrier Reef ecosystems. Marine Pollution Bulletin, 179. 113656.

Smith, Timothy M., Sherman, Craig D.H., Cumming, Erin E., York, Paul H., and Jarvis, Jessie C. (2022) Size matters: variations in seagrass seed size at local scales affects seed performance. Hydrobiologia, 849. pp. 2335-2352.

Sheaves, Marcus, Mattone, Carlo, Connolly, Rod M., Hernandez, Stephanie, Nagelkerken, Ivan, Murray, Nicholas, Ronan, Michael, Waltham, Nathan John, and Bradley, Michael (2021) Ecological constraint mapping: understanding uutcome-limiting bottlenecks for improved environmental decision-making in marine and coastal environments. Frontiers in Marine Science, 8. 717448.

Smith, T.M., and Rasheed, M.A. (2021) Port of Bundaberg Seagrass and Benthic Monitoring Survey 2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Smith, T.M., Reason, C., McKenna, S., and Rasheed, M.A. (2021) Seagrasses in Port Curtis and Rodds Bay 2020 Annual long‐term monitoring. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Scott, Abigail L., York, Paul H., Macreadie, Peter I., and Rasheed, Michael A. (2021) Spatial and temporal variability of green turtle and dugong herbivory in seagrass meadows of the southern Great Barrier Reef (GBR). Marine Ecology Progress Series, 667. pp. 225-231.

Saha, Narottam, Webb, Gregory E., Zhao, Jian-Xin, Lewis, Stephen E., Nguyen, Ai Duc, and Feng, Yuexing (2021) Spatiotemporal variation of rare earth elements from river to reef continuum aids monitoring of terrigenous sources in the Great Barrier Reef. Geochimica et Cosmochimica Acta, 299. pp. 85-112.

Sadat-Noori, Mahmood, Anibas, Christian, Andersen, Martin S., and Glamore, William (2021) A comparison of radon, heat tracer and head gradient methods to quantify surface water - groundwater exchange in a tidal wetland (Kooragang Island, Newcastle, Australia). Journal of Hydrology, 598. 126281.

Song, Andrew M., Scholtens, Joeri, Barclay, Kate, Bush, Simon R., Fabinyi, Michael, Adhuri, Dedi S., and Haughton, Milton (2020) Collateral damage? Small-scale fisheries in the global fight against IUU fishing. Fish and Fisheries, 21 (4). pp. 831-843.

Smith, Tim, Reason, Carissa, McKenna, Skye, and Rasheed, Michael (2020) Port of Weipa long‐term seagrass monitoring program, 2000‐2020. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Smith, T.M., Chartrand, K.M., Wells, J.N., Carter, A.B., and Rasheed, M.A. (2020) Seagrasses in Port Curtis and Rodds Bay 2019 Annual long‐term monitoring and whole of port survey: a report for Gladstone Ports Corporation. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Smith, T.M., Reason, C.L., and Rasheed, M.A. (2020) Western Basin expansion reclamation area and barge unloading facility seagrass and marine plants survey. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Sadat-Noori, Mahmood, and Glamore, William (2019) Porewater exchange drives trace metal, dissolved organic carbon and total dissolved nitrogen export from a temperate mangrove wetland. Journal of Environmental Management, 248. 109264.

Sadat-Noori, Mahmood, Tait, Douglas R., Maher, Damien T., Holloway, Ceylena, and Santos, Isaac R. (2018) Greenhouse gases and submarine groundwater discharge in a Sydney Harbour embayment (Australia). Estuarine, Coastal and Shelf Science, 207. pp. 499-509.

Shepherd, Lloyd, Sozou, Alysha, and Rasheed, Michael (2018) Port of Karumba Long‐term Annual Seagrass Monitoring: November 2017. Report. UNSPECIFIED, Cairns.

Sozou, Alysha, and Rasheed, Michael (2018) Port of Weipa long-term seagrass monitoring program, 2000 - 2017. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Sozou, A., Wells, J.N., and Rasheed, M.A. (2017) Long-term Seagrass Monitoring in the Port of Thursday Island: March 2017. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Sozou, A.M., and Rasheed, M.A. (2017) Port of Karumba Long-term Annual Seagrass Monitoring: November 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Sadat-Noori, Mahmood, Santos, Isaac R., Tait, Douglas R., and Maher, Damien T. (2016) Fresh meteoric versus recirculated saline groundwater nutrient inputs into a subtropical estuary. Science of the Total Environment, 566-567. pp. 1440-1453.

Sadat-Noori, Mahmood, Maher, Damien T., and Santos, Isaac R. (2016) Groundwater Discharge as a Source of Dissolved Carbon and Greenhouse Gases in a Subtropical Estuary. Estuaries and Coasts, 39. pp. 639-656.

Sozou, Alysha, McKenna, Skye, and Rasheed, Michael (2016) Port of Karumba Long‐term Annual Seagrass Monitoring: September 2015. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Schaffelke, Britta, Brinkman, Richard, Dobbs, Kirstin, Jones, Ross, Kane, Kevin, Negri, Andrew, and Rasheed, Michael (2016) The establishment of a future NESP dredging research investment framework: NESP TWQ Hub Project 1.9. Report. Reef and Rainforest Research Centre Limited, Cairns, QLD, Australia.

T

Trevathan-tackett, Stacey, Kepfer-Rojas, Sebastian, Malerba, Martino, Macreadie, Peter, Djukic, Ika, Zhou, Junbin, Young, Erica, York, Paul H., Yeh, Shin-Cheng, Yanmei, Xiong, Winters, Gidon, Whitlock, Danielle, Weaver, Carolyn, Watson, Anne, Visby, Inger, Tylkowski, Jacek, Trethowan, Allison, Tiegs, Scott, Taylor, Ben, Szpikowski, Jozef, Szpikowski, Grazyna, Strickland, Victoria, Stivrins, Normunds, Sousa, Ana, Sinutok, Sutinee, Schaffel, Whitney, Santos, Rui, Sanderman, Jonathan, Sánchez-Carrillo, Salvador, Sanchez-Cabeza, Joan-Albert, Rymer, Krzysztof G., Ruiz-Fernandez, Ana Carolina, Robroek,, Bjorn J. M., Roberts, Tessa, Ricart, Aurora M., Reynolds, Laura K., Rachlewicz, Grzegorz, Prathep, Anchana, Pinsonneault, Andrew J., Pendall, Elise, Payne, Richard, Ozola, Ilze, Onufrock, Cody, Ola, Anne, Oberbauer, Steven F., Numbere, Aroloye O., Novak, Alyssa B., Norkko, Joanna, Norkko, Alf, Mozdzer, Thomas J., Morgan,, Pam, Montemayor, Diana I., Martin, Charles W., Malone, Sparkle L., Major, Maciej, Majewski, Mikołaj, Lundquist, Carolyn J., Lovelock, Catherine E., Liu, Songlin, Lin, Hsing-Juh, Lillebo, Ana, Li, Jinquan, Kominoski, John S., Khuroo, Anzar Ahmad, Kelleway, Jeffrey J., Jinks, Kristin I., Jerónimo, Daniel, Janousek, Christopher, Jackson, Emma L., Iribarne, Oscar, Hanley, Torrance, Hamid, Maroof, Gupta, Arjun, Guariento, Rafael D., Grudzinska, Ieva, Gripp, Anderson da Rocha, González Sagrario, María A., Garrison, Laura M., Gagnon, Karine, Gacia, Esperança, Fusi, Marco, Farrington, Lachlan, Farmer, Jenny, Esteves, Francisco de Assis, Escapa, Mauricio, Monika, Domańska, Dias, André T. C., de los Santos, Carmen B., Daffonchio, Daniele, Czyryca, Paweł M., Connolly, Rod M., Cobb, Alexander, Chudzińska, Maria, Christiaen, Bart, Chifflard, Peter, Castelar, Sara, Carneiro, Luciana S., Cardoso-Mohedano, José Gilberto, Camden, Megan, Caliman, Adriano, Bulmer, Richard H., Bowen, Jennifer, Boström, Christoffer, Bernal, Susana, Berges, John A., Benavides, Juan C., Barry, Savanna C., Alatalo, Juha M., Al-Haj, Alia N., and Adame, Maria Fernanda (2024) Climate Effects on Belowground Tea Litter Decomposition Depend on Ecosystem and Organic Matter Types in Global Wetlands. Environmental Science & Technology, 58 (49). pp. 21589-21603.

Templeman, Michelle, and McDonald, Sarah (2024) Question 5.2 What are the primary sources of pesticides that have been found in Great Barrier Reef ecosystems and what are the key factors that influence pesticide delivery from source to ecosystem? [in 2022 Scientific Consensus Statement on land-based impacts on Great Barrier Reef water quality and ecosystem condition]. Report Section. Commonwealth of Australia and Queensland Government.

Thompson-Saud, G., Grech, A., Choukroun, S., Vásquez, S.I., Salas, C., and Ospina‐Alvarez, A. (2024) The biophysical dynamics of giant kelp, Macrocystis pyrifera: Seasonal patterns and dispersal mechanisms in the southeast Pacific. Journal of Biogeography. (In Press)

Thompson, Cassandra Ann (2023) Sub-lethal effects of coral loss and habitat degradation on coral reef fishes with specific emphasis on Chaetodon butterflyfishes. Masters (Research) thesis, James Cook University.

Trujillo-González, Alejandro, Villacorta Rath, Cecilia, White, Nicole E., Furlan, Elise M., Sykes, Mark, Grossel, Geoff, Divi, Uday K., and Gleeson, Dianne (2021) Considerations for future environmental DNA accreditation and proficiency testing schemes. Environmental DNA, 3 (6). pp. 1049-1058.

Tien, Huynh Van, Tuan Anh, Nguyen, Tan Phong, Nguyen, and Minh Nhut, Mai Le (2021) Ecological Engineering and Restoration of Eroded Muddy Coasts in South East Asia: Knowledge Gaps and Recommendations. Sustainability, 13 (3). 1248.

Trevathan-tackett, Stacey M., Kepfer-Rojas, Sebastian, Engelen, Aschwin H., York, Paul, Ola, Anne, Li, Jinquan, Kelleway, Jeffrey J., Jinks, Kristin I., Jackson, Emma L., Adame, Maria Fernanda, Pendall, Elise, Lovelock, Catherine E., Connolly, Rod M., Watson, Anne, Visby, Inger, Trethowan, Allison, Taylor, Ben, Roberts, Tessa N.B., Petch, Jane, Farrington, Lachlan, Djukic, Ika, and Macreadie, Peter I. (2021) Ecosystem type drives tea litter decomposition and associated prokaryotic microbiome communities in freshwater and coastal wetlands at a continental scale. Science of the Total Environment, 782. 146819.

Tol, Samantha J., Jarvis, Jessie C., York, Paul H., Congdon, Bradley C., and Coles, Robert G. (2021) Mutualistic relationships in marine angiosperms: enhanced germination of seeds by mega-herbivores. Biotropica, 53 (6). pp. 1535-1545.

Tebbett, Sterling B., Goatley, Christopher H. R., Streit, Robert P., and Bellwood, David R. (2020) Algal turf sediments limit the spatial extent of function delivery on coral reefs. Science of the Total Environment, 734. 139422.

Tol, Samantha (2020) Relative importance of different seagrass re-establishment strategies in tropical Queensland, Australia. PhD thesis, James Cook University.

U

Udy, J., Waycott, M., Carter, A., Collier, C., Kilminster, K., Rasheed, M., McKenzie, L., McMahon, K., Maxwell, P., Lawrence, E., and Honchin, C. (2019) Monitoring Seagrass within the Reef 2050 Integrated Monitoring and Reporting Program: final report of the Seagrass Expert Group. Report. Great Barrier Reef Marine Park Authority, Townsville, QLD, Australia.

V

Van Der Kolk, Henk-jan, Smit, Cor J., Allen, Andrew M., Ens, Bruno J., and van de Pol, Martijn (2024) Frequency‐dependent tolerance to aircraft disturbance drastically alters predicted impact on shorebirds. Ecology Letters, 27. e14452.

Van Der Kolk, Henk-Jan, Ens, Bruno J., Oosterbeek, Kees, Jongejans, Eelke, and van de Pol, Martijn (2022) The hidden cost of disturbance: Eurasian Oystercatchers (Haematopus ostralegus) avoid a disturbed roost site during the tourist season. Ibis, 164 (2). pp. 437-450.

van de Wetering, C., Carter, A.B., and Rasheed, M.A. (2021) Mackay-Whitsunday-Isaac Seagrass Monitoring 2017-2020: marine inshore south zone. Report. James Cook University, Cairns, QLD, Australia.

van de Wetering, C., York, P.H., Reason, C.L., Wilkinson, J., and Rasheed, M.A. (2020) Port of Abbot Point Long-Term Seagrass Monitoring Program 2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

van de Wetering, C., Carter, A., and Rasheed, M. (2020) Seagrass habitat of Mourilyan Harbour: annual monitoring report – 2019. Report. James Cook University, Cairns, QLD, Australia.

W

Walker, S.E., Sheaves, M., and Waltham, N.J. (2023) Barriers to Using UAVs in Conservation and Environmental Management: A Systematic Review. Environmental Management, 71. pp. 1052-1064.

Wilkinson, Adam, Ariel, Ellen, Van De Merwe, Jason, and Brodie, Jon (2023) Green Turtle (Chelonia mydas) Blood and Scute Trace Element Concentrations in the Northern Great Barrier Reef. Environmental Toxicology and Chemistry, 42 (11). pp. 2375-2388.

Walker, Sophie, Waltham, Nathan, Buelow, Christina, and Iles, Jordan (2022) Coastal habitat restoration, invasive species and remote monitoring solutions. In: Humphreys, John, and Little, Sally, (eds.) Challenges in Estuarine and Coastal Science: Estuarine and Coastal Sciences Association 50th anniversary volume. Pelagic Publishing, Exeter, UK, pp. 160-176.

Waltham, N.J., Iles, J.A., and Cartwright, P. (2022) Port of Weipa Ambient Marine Water Quality Monitoring Program: Annual Report 2021-2022. Report. TropWATER, James Cook University, Townsville, QLD, Australia.

Wells, Jaclyn, Reason, Carissa, and Rasheed, Michael (2019) Seagrass habitat of Mourilyan Harbour: Annual Monitoring Report – 2018. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Wells, Jaclyn, and Rasheed, Michael (2017) Port of Townsville Annual Seagrass Monitoring and Baseline Survey: September - October 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Welti, N., Gale, D., Hayes, M., Kumar, A., Gasparon, M., Gibbes, B., and Lockington, D. (2015) Intertidal diatom communities reflect patchiness in groundwater discharge. Estuarine, Coastal and Shelf Science, 163 (Part B). pp. 116-124.

X

Xiao, Hui, Chadès, Iadine, Hill, Narelle, Murray, Nicholas, Fuller, Richard A., and Mcdonald-Madden, Eve (2021) Conserving migratory species while safeguarding ecosystem services. Ecological Modelling, 442. 109442.

Y

York, Paul H., Scott, Abigail L., Smith, Timothy M., Davey, Peter A., Carter, Alex B., and Rasheed, Michael A. (2024) Megaherbivory is a major force driving seagrass structure on the Great Barrier Reef. In: ISBW15 & WSC2024 Book of Abstracts. From: ISBW 2024: International Seagrass Biology Workshop, 17-21 June 2024, Naples, Italy.

York, P.H., van de Wetering, C., Reason, C.L., and Rasheed, M.A. (2023) Annual Seagrass Monitoring in the Mackay – Hay Point Region - 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

York, P.H., Bryant, C.V., McKenna, S.A., and Rasheed, M.A. (2022) Port of Abbot Point Long-Term Seagrass Monitoring Program 2021: A Report for North Queensland Bulk Ports Corporation (NQBP). Report. TropWATER, James Cook University, Cairns, QLD, Australia.

York, P.H., and Rasheed, M.A. (2020) Annual Seagrass Monitoring in the Mackay‐Hay Point Region 2019. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Younes Cárdenas, Nicolás (2020) Examining spatiotemporal changes in the phenology of Australian mangroves using satellite imagery. PhD thesis, James Cook University.

York, Paul, and Rasheed, Michael (2019) Annual Seagrass Monitoring in the Mackay-Hay Point Region – 2018. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

York, P.H., and Rasheed, M.A. (2018) Annual Seagrass Monitoring in the Mackay-Hay Point Region – 2017. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

York, P.H., and Rasheed, M.A. (2017) Seagrass habitat of Cairns Harbour and Trinity Inlet: Annual Monitoring Report 2016. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

York, Paul, Coles, Rob, Sankey, Tonia, Omundsen, Sarah, Rasheed, Michael, and Sheaves, Marcus (2016) Assessing the ecological and economic impacts of a drastic decline in tropical seagrass meadows on fish and prawn assemblages. In: 12th International Seagrass Biology Workshop Programme. pp. 63-64. From: ISBW12: 12th International Seagrass Biology Workshop, 16-21 October 2016, Nant Gwrtheyrn, Wales.

Z

Zimmer, Martin, Ajonina, Gordon N., Amir, A. Aldrie, Crgagg, Simon M., Crooks, Stephen, Dahdouh-guebas, Farid, Duke, Norman C., Fratini, Sara, Friess, Daniel A., Helfer, Véronique, Huxham, Mark, Kathiresan, Kandasamy, Kodikara, K.A. Sunada, Koedam, Nico, Lee, Shing Yip, Mangora, Mwita M., Primavera, Jurgenne, Satyanarayana, Behara, Yong, Jean Wan Hong, and Wodehouse, Dominic (2022) When nature needs a helping hand: Different levels of human intervention for mangrove (re-)establishment. Frontiers in Forests and Global Change, 5. 784322.

Ziegler, Shelby L., Baker, Ronald, Crosby, Sarah C., Colombano, Denise D., Barbeau, Myriam A., Cebrian, Just, Connolly, Rod M., Deegan, Linda A., Gilby, Ben L., Mallick, Debbrota, Martin, Charles W., Nelson, James A., Reinhardt, James F., Simenstad, Charles A., Waltham, Nathan J., Worthington, Thomas A., and Rozas, Lawrence P. (2021) Geographic variation in salt marsh structure and function for Nekton: a guide to finding commonality across multiple scales. Estuaries and Coasts, 44. pp. 1497-1507.

Á

Álvarez-Romero, Jorge, and Buissereth, Rachel (2021) Looking back to look forward: a timeline of the Fitzroy River catchment, Story Map. [Creative Work]