Article

Horowitz, Jeremy, Quattrini, Andrea M., Brugler, Mercer R., Miller, David J., Pahang, Kristina, Bridge, Tom C.L., and Cowman, Peter F. (2023) Bathymetric evolution of black corals through deep time. Proceedings of the Royal Society of London Series B, Biological Sciences, 290 (2008). 20231107.

Deng, Zhixiong, Zhang, Xiuping, Wolinska, Justyna, Blair, David, Hu, Wei, and Yin, Mingbo (2023) Climate has contributed to population diversification of Daphnia galeata across Eurasia. Molecular Ecology, 32 (18). pp. 5110-5124.

Lau, Sally C.Y., Strugnell, Jan M., Sands, Chester J., Silva, Catarina N.S., and Wilson, Nerida G. (2023) Genomic insights of evolutionary divergence and life histories innovations in Antarctic brittle stars. Molecular Ecology, 32 (13). pp. 3382-3402.

Donelson, J.M., Gaitan-Espitia, J.D., Hobday, A.J., Mokany, K., Andrew, S.C., Boulter, S., Cook, C.N., Dickson, F., Macgregor, N.A., Mitchell, N.J., Pickup, M., and Fox, R.J. (2023) Putting plasticity into practice for effective conservation actions under climate change. Nature Climate Change, 13 (7). pp. 632-647.

Irimia, Ramona E., Montesinos, Daniel, Chaturvedi, Anurag, Sanders, Ian, Hierro, José L., Sotes, Gastón, Cavieres, Lohengrin A., Eren, Özkan, Lortie, Christopher J., French, Kristine, and Brennan, Adrian Christopher (2023) Trait evolution during a rapid global weed invasion despite little genetic differentiation. Evolutionary Applications, 16 (5). pp. 997-1011.

O'Brien, Paul A., Tan, Shangjin, Frade, Pedro R., Robbins, Steven J., Engelberts, J. Pamela, Bell, Sara C., Vanwonterghem, Inka, Miller, David J., Webster, Nicole S., Zhang, Guojie, and Bourne, David G. (2023) Validation of key sponge symbiont pathways using genome-centric metatranscriptomics. Environmental Microbiology, 25 (12). pp. 3207-3224.

Field, Matt A., Yadav, Sonu, Dudchenko, Olga, Esvaran, Meera, Rosen, Benjamin D., Skvortsova, Ksenia, Edwards, Richard J., Keilwagen, Jens, Cochran, Blake J., Manandhar, Bikash, Bustamante, Sonia, Rasmussen, Jacob Agerbo, Melvin, Richard G., Chernoff, Barry, Omer, Arina, Colaric, Zane, Chan, Eva K.F., Minoche, Andre E., Smith, Timothy P.L., Gilbert, M.Thomas P., Bogdanovic, Ozren, Zammit, Robert A., Thomas, Torsten, Aiden, Erez L., and Ballard, J. William O. (2022) The Australian dingo is an early offshoot of modern breed dogs. Science Advances, 8 (16). eabm5944.

Payet, Samuel D., Pratchett, Morgan S., Saenz-agudelo, Pablo, Berumen, Michael L., Dibattista, Joseph D., and Harrison, Hugo B. (2022) Demographic histories shape population genomics of the common coral grouper (Plectropomus leopardus). Evolutionary Applications, 15 (8). pp. 1221-1235.

Montesinos, Daniel (2022) Fast invasives fastly become faster: invasive plants align largely with the fast side of the plant economics spectrum. Journal of Ecology, 110 (5). pp. 1010-1014.

Siqueira Correa, Alexandre, Kiessling, Wolfgang, and Bellwood, David (2022) Fast-growing species shape the evolution of reef corals. Nature Communications, 13. 2426.

Sato, Yui, Wippler, Juliane, Wentrup, Cecilia, Ansorge, Rebecca, Sadowski, Miriam, Gruber-Vodicka, Harald, Dubilier, Nicole, and Kleiner, Manuel (2022) Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium. Microbiome, 10. 178.

Kosch, Tiffany A., Waddle, Anthony W., Cooper, Caitlin A., Zenger, Kyall R., Garrick, Dorian J., Berger, Lee, and Skerratt, Lee F. (2022) Genetic approaches for increasing fitness in endangered species. Trends in Ecology & Evolution, 37 (4). pp. 332-345.

Bledsoe-Becerra, Yessenia, Whittaker, Iesha, Horowitz, Jeremy, Naranjo, Katherine Medina, Johnson-Rosemond, Jicayla, Mullins, Kristen H., Cunningham, Karena M., Shetty, Suchir, Messinides, Samuel N., Behney, Melinda S., Fehsal, Jessica A., Watson, Ashley N., McKnight, Kaitlyn E., Nasiadka, Teresa W., Popa, Horia, Pettay, D. Tye, Appiah-Madson, Hannah J., Distel, Daniel L., and Brugler, Mercer R. (2022) Mitogenomics reveals low variation within a trigeneric complex of black corals from the North Pacific Ocean. Organisms Diversity and Evolution, 22 (2). pp. 343-353.

Bernal, Moisés A., Ravasi, Timothy, Rodgers, Giverny G., Munday, Philip L., and Donelson, Jennifer M. (2022) Plasticity to ocean warming is influenced by transgenerational, reproductive, and developmental exposure in a coral reef fish. Evolutionary Applications, 15 (2). pp. 249-261.

Rowe, Melissah, van Oort, Aaabel, Brouwer, Lyanne, Lifjeld, Jan T., Webster, Michael S., Welklin, Joseph F., and Baldassarre, Daniel T. (2022) Sperm numbers as a paternity guard in a wild bird. Cells, 11 (2). 231.

Godoy, Bruno S., Valente-Neto, Francisco, Queiroz, Luciano L., Holanda, Luis F.R., Roque, Fabio O., Lodi, Sara, and Oliveira, Leandro G. (2022) Structuring functional groups of aquatic insects along the resistance/resilience axis when facing water flow changes. Ecology and Evolution, 12 (3). e8749.

Lau, Sally C.Y., Strugnell, Jan M., Sands, Chester J., Silva, Catarina N.S., and Wilson, Nerida G. (2021) Evolutionary innovations in Antarctic brittle stars linked to glacial refugia. Ecology and Evolution, 11 (23). pp. 17428-17446.

Josi, Dario, Heg, Dik, Takeyama, Tomohiro, Bonfils, Danielle, Konovalov, Dmitry A., Frommen, Joachim G., Kohda, Masanori, and Taborsky, Michael (2021) Age‐ and sex‐dependent variation in relatedness corresponds to reproductive skew, territory inheritance and workload in cooperatively breeding cichlids. Evolution, 75 (11). pp. 2881-2897.

Edwards, Richard J., Field, Matt A., Ferguson, James M., Dudchenko, Olga, Keilwagen, Jens, Rosen, Benjamin D., Johnson, Gary S., Rice, Edward S., Hillier, La Deanna, Hammond, Jillian M., Towarnicki, Samuel G., Omer, Arina, Khan, Ruqayya, Skvortsova, Ksenia, Bogdanovic, Ozren, Zammit, Robert A., Aiden, Erez Lieberman, Warren, Wesley C., and Ballard, J. William O. (2021) Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome. BMC Genomics, 22. 188.

Hemingson, Christopher R., Siqueira, Alexandre C., Cowman, Peter F., and Bellwood, David R. (2021) Drivers of eyespot evolution in coral reef fishes. Evolution, 75 (4). pp. 903-914.

Baird, Andrew H., Yakovleva, Irina, Harii, Saki, Sinniger, Frederic, and Hidaka, Michio (2021) Environmental constraints on the mode of symbiont transmission in corals. Journal of Experimental Marine Biology and Ecology, 538. 151499.

Irimia, Ramona E., Hierro, José L., Branco, Soraia, Sotes, Gastón, Cavieres, Lohengrin A., Eren, Özkan, Lortie, Christopher J., French, Kristine, Callaway, Ragan M., and Montesinos, Daniel (2021) Experimental admixture among geographically disjunct populations of an invasive plant yields a global mosaic of reproductive incompatibility and heterosis. Journal of Ecology, 109 (5). pp. 2152-2162.

Siqueira, Alexandre C., Morais, Renato A., Bellwood, David R., and Cowman, Peter F. (2021) Planktivores as trophic drivers of global coral reef fish diversity patterns. Proceedings of the National Academy of Sciences of the United States of America, 118 (9). e2019404118.

Colombelli-Négrel, Diane, Hauber, Mark E., Evans, Christine, Katsis, Andrew C., Brouwer, Lyanne, Adreani, Nicolas M., and Kleindorfer, Sonia (2021) Prenatal auditory learning in avian vocal learners and non-learners. Philosophical Transactions of the Royal Society B: Biological Sciences, 376 (1836). 20200247.

Odom, Karan J., Cain, Kristal E., Hall, Michelle L., Langmore, Naomi E., Mulder, Raoul A., Kleindorfer, Sonia, Karubian, Jordan, Brouwer, Lyanne, Enbody, Erik D., Jones, John Anthony, Dowling, Jenélle L., Leitão, Ana V., Greig, Emma I., Evans, Christine, Johnson, Allison E., Meyers, Kimberley K.A., Araya-Salas, Marcelo, and Webster, Michael S. (2021) Sex role similarity and sexual selection predict male and female song elaboration and dimorphism in fairy-wrens. Ecology and Evolution, 11 (24). pp. 17901-17919.

O'Brien, Paul A., Andreakis, Nikolaos, Tan, Shangjin, Miller, David, Webster, Nicole S., Zhang, Guojie, and Bourne, David G. (2021) Testing cophylogeny between coral reef invertebrates and their bacterial and archaeal symbionts. Molecular Ecology, 30 (15). pp. 3768-3782.

Downie, Adam T., Leis, Jeffrey M., Cowman, Peter F., McCormick, Mark I., and Rummer, Jodie L. (2021) The influence of habitat association on swimming performance in marine teleost fish larvae. Fish and Fisheries, 22 (6). pp. 1187-1212.

McMahon, Shannon, Parsons, Darren M., Donelson, Jennifer, Pether, Steve M. J., and Munday, Philip L. (2020) Elevated temperature and CO₂ have positive effects on the growth and survival of larval Australasian snapper. Marine Environmental Research, 161. 105054.

Monteirou, LaraM., Brum, Fernanda Thiesen, Pressey, Robert L., Morellato, Leonor Patricia C., Soares-Filho, Britaldo, Lima-Ribeiro, Matheus S., and Loyola, Rafael (2020) Evaluating the impact of future actions in minimizing vegetation loss from land conversion in the Brazilian Cerrado under climate change. Biodiversity and Conservation, 29 (5). pp. 1701-1722.

Gainsford, Ashton, Jones, Geoffrey P., Hobbs, Jean-Paul A., Heindler, Franz Maximilian, and van Herwerden, Lynne (2020) Species integrity, introgression, and genetic variation across a coral reef fish hybrid zone. Ecology and Evolution, 10 (21). pp. 11998-12014.

Downie, Adam T., Illing, Bjorn, Faria, Ana, and Rummer, Jodie L. (2020) Swimming performance of marine fish larvae: review of a universal trait under ecological and environmental pressure. Reviews in Fish Biology and Fisheries, 30 (1). pp. 93-108.

Siqueira, Alexandre C., Morais, Renato A., Bellwood, David R., and Cowman, Peter F. (2020) Trophic innovations fuel reef fish diversification. Nature Communications, 11. 2669.

Cain, Kristal E., Hall, Michelle L., Medina, Illiana, Leitao, Ana V., Delhey, Kaspar, Brouwer, Lyanne, Peters, Anne, Pruett-Jones, Stephen, Webster, Michael S., Langmore, Naomi E., and Mulder, Raoul A. (2019) Conspicuous plumage does not increase predation risk: a continent-wide test using model songbirds. American Naturalist, 193 (3). pp. 359-372.

Brouwer, Lyanne, and Griffith, Simon C. (2019) Extra-pair paternity in birds. Molecular Ecology, 28 (22). pp. 4864-4882.

Quigley, Kate M., Bay, Line K., and van Oppen, Madeleine J. H. (2019) The active spread of adaptive variation for reef resilience. Ecology and Evolution, 9 (19). pp. 11122-11135.

Ortiz, Diego A., Lima, Albertina P., and Werneck, Fernanda P. (2018) Environmental transition zone and rivers shape intraspecific population structure and genetic diversity of an Amazonian rain forest tree frog. Evolutionary Ecology, 32. pp. 359-378.

Slik, J.W. Ferry, Franklin, Janet, Arroyo-Rodríguez, Víctor, Field, Richard, Aguilar, Salomon, Aguirre, Nikolay, Ahumada, Jorge, Aiba, Shin-Ichiro, Alves, Luciana F., K, Anitha, Avella, Andres, Mora, Francisco, Aymard C., Gerardo A., Báez, Selene, Balvanera, Patricia, Bastian, Meredith L., Bastin, Jean-François, Bellingham, Peter J., van den Berg, Eduardo, da Conceição Bispo, Polyanna, Boeckx, Pascal, Boehning-Gaese, Katrin, Bongers, Frans, Boyle, Brad, Brambach, Fabian, Brearley, Francis Q., Brown, Sandra, Chai, Shauna-Lee, Chazdon, Robin L., Chen, Shengbin, Chhang, Phourin, Chuyong, George, Ewango, Corneille, Coronado, Indiana M., Cristóbal-Azkarate, Jurgi, Culmsee, Heike, Damas, Kipiro, Dattaraja, H.S., Davidar, Priya, DeWalt, Saara J., Din, Hazimah, Drake, Donald R., Duque, Alvaro, Durigan, Giselda, Eichhorn, Karl, Eler, Eduardo Schmidt, Enoki, Tsutomu, Ensslin, Andreas, Fandohan, Adandé Belarmain, Farwig, Nina, Feeley, Kenneth J., Fischer, Markus, Forshed, Olle, Garcia, Queila Souza, Garkoti, Satish Chandra, Gillespie, Thomas W., Gillet, Jean-Francois, Gonmadje, Christelle, Granzow-de la Cerda, Iñigo, Griffith, Daniel M., Grogan, James, Hakeem, Khalid Rehman, Harris, David J., Harrison, Rhett D., Hector, Andy, Hemp, Andreas, Homeier, Jürgen, Hussain, M. Shah, Ibarra-Manríquez, Guillermo, Hanum, I. Faridah, Imai, Nobuo, Jansen, Patrick A., Joly, Carlos Alfredo, Joseph, Shijo, Kartawinata, Kuswata, Kearsley, Elizabeth, Kelly, Daniel L., Kessler, Michael, Killeen, Timothy J., Kooyman, Robert M., Laumonier, Yves, Laurance, Susan G., Laurance, William F., Lawes, Michael J., Fletcher, Susan G., Lindsell, Jeremy, Lovett, Jon, Lozada, Jose, Lu, Xinghui, Lykke, Anne Mette, Mahmud, Khairil Bin, Mahayani, Ni Putu Diana, Mansor, Asyraf, Marshall, Andrew R., Martin, Emanuel H., Calderado Leal Matos, Darley, Meave, Jorge A., Melo, Felipe P.L., Mendoza, Zhofre Huberto Aguirre, Metali, Faizah, Medjibe, Vincent P., Metzger, Jean Paul, Metzker, Thiago, Mohandass, D., Munguía-Rosas, Miguel A., Muñoz, Rodrigo, Nurtjahy, Eddy, de Oliveira, Eddie Lenza, Onrizal, , Parolin, Pia, Parren, Marc, Parthasarathy, N., Paudel, Ekananda, Perez, Rolando, Pérez-García, Eduardo A., Pommer, Ulf, Poorter, Lourens, Qie, Lan, Piedade, Maria Teresa F., Rodriguez Pinto, José Roberto, Poulsen, Axel Dalberg, Poulsen, John R., Powers, Jennifer S., Prasad, Rama Chandra, Puyravaud, Jean-Philippe, Rangel, Orlando, Reitsma, Jan, Rocha, Diogo S.B., Rolim, Samir, Rovero, Francesco, Rozak, Andes, Ruokolainen, Kalle, Rutishauser, Ervan, Rutten, Gemma, Mohd. Said, Mohd. Nizam, Saiter, Felipe Z., Saner, Philippe, Santos, Braulio, dos Santos, João Roberto, Sarker, Swapan Kumar, Schmitt, Christine B., Schoengart, Jochen, Schulze, Mark, Sheil, Douglas, Sist, Plinio, Souza, Alexandre F., Spironello, Wilson Roberto, Sposito, Tereza, Steinmetz, Robert, Stevart, Tariq, Suganuma, Marcio Seiji, Sukri, Rahayu, Sultana, Aisha, Sukumar, Raman, Sunderland, Terry, Supriyadi, , Suresh, H.S., Suzuki, Eizi, Tabarelli, Marcelo, Tang, Jianwei, Tanner, Ed V.J., Targhetta, Natalia, Theilade, Ida, Thomas, Duncan, Timberlake, Jonathan, de Morisson Valeriano, Márcio, van Valkenburg, Johan, Van Do, Tran, Van Sam, Hoang, Vandermeer, John H., Verbeeck, Hans, Vetaas, Ole Reidar, Adekunle, Victor, Vieira, Simone A., Webb, Campbell O., Webb, Edward L., Whitfeld, Timothy, Wich, Serge, Williams, John, Wiser, Susan, Wittmann, Florian, Yang, Xiaobo, Adou Yao, C. Yves, Yap, Sandra L., Zahawi, Rakan A., Zakaria, Rahmad, and Zang, Runguo (2018) Phylogenetic classification of the world’s tropical forests. Proceedings of the National Academy of Sciences of the United States of America, 115 (8). pp. 1837-1842.

Wright, David J., Brouwer, Lyanne, Mannarelli, Maria Elena, Burke, Terry, Komdeur, Jan, and Richardson, David S. (2016) Social pairing of Seychelles warblers under reduced constraints: MHC, neutral heterozygosity, and age. Behavioral Ecology, 27 (1). pp. 295-303.

Sarker, Subir, Das, Shubhagata, Forwood, Jade, Helbig, Karla, and Raidal, Shane R. (2016) The complete mitochondrial genome sequence of an Endangered powerful owl (Ninox strenua). Mitochondrial DNA Part B: Resources, 1 (1). pp. 722-723.

Cockburn, Andrew, Brouwer, Lyanne, Double, Michael C., Margraf, Nicolas, and van de Pol, Martijn (2013) Evolutionary origins and persistence of infidelity in Malurus: the least faithful birds. Emu: austral ornithology, 113 (3). pp. 208-217.

van de Pol, Martijn, Brouwer, Lyanne, Ens, Bruno J., Oosterbeek, Kees, and Tinbergen, Joost M. (2010) Fluctuating selection and the maintenance of individual and sex-specific diet specialization in free-living oystercatchers. Evolution, 64 (3). pp. 836-851.

Thesis

O'Brien, Paul (2022) Host-microbe symbiosis and coevolution in coral reef invertebrates. PhD thesis, James Cook University.

Horowitz, Jeremy (2022) The taxonomy, biodiversity, and evolutionary history of black corals (order Antipatharia). PhD thesis, James Cook University.

Downie, Adam Tyler (2021) How do coral reef fishes develop into athletes? PhD thesis, James Cook University.

Hemingson, Christopher Rae (2021) The colours of coral reef fishes. PhD thesis, James Cook University.

McMahon, Shannon J. (2021) The effects of climate change on the growth and physiology of reef snappers. PhD thesis, James Cook University.

Siqueira Correa, Alexandre (2020) The evolution, macroecology and biogeography of coral reef fishes: a trophic perspective. PhD thesis, James Cook University.