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Dibattista, Joseph D., Alfaro, Michael E., Sorenson, Laurie, Choat, John H., Hobbs, Jean-Paul A., Sinclair-Taylor, Tane H., Rocha, Luiz A., Chang, Jonathan, Luiz, Osmar J., Cowman, Peter F., Friedman, Matt, and Berumen, Michael L. (2018) Ice ages and butterflyfishes: phylogenomics elucidates the ecological and evolutionary history of reef fishes in an endemism hotspot. Ecology and Evolution, 8 (22). pp. 10989-11008.

von May, Rudolf, Catenazzi, Alessandro, Santa-Cruz, Roy, Kosch, Tiffany A., and Vredenburg, Vance T. (2018) Microhabitat temperatures and prevalence of the pathogenic fungus batrachochytrium dendrobatidis in lowland amazonian frogs. Tropical Conservation Science, 11.

Slik, J.W. Ferry, Franklin, Janet, Arroyo-Rodríguez, Víctor, Field, Richard, Aguilar, Salomon, Aguirre, Nikolay, Ahumada, Jorge, Aiba, Shin-Ichiro, Alves, Luciana F., K, Anitha, Avella, Andres, Mora, Francisco, Aymard C., Gerardo A., Báez, Selene, Balvanera, Patricia, Bastian, Meredith L., Bastin, Jean-François, Bellingham, Peter J., van den Berg, Eduardo, da Conceição Bispo, Polyanna, Boeckx, Pascal, Boehning-Gaese, Katrin, Bongers, Frans, Boyle, Brad, Brambach, Fabian, Brearley, Francis Q., Brown, Sandra, Chai, Shauna-Lee, Chazdon, Robin L., Chen, Shengbin, Chhang, Phourin, Chuyong, George, Ewango, Corneille, Coronado, Indiana M., Cristóbal-Azkarate, Jurgi, Culmsee, Heike, Damas, Kipiro, Dattaraja, H.S., Davidar, Priya, DeWalt, Saara J., Din, Hazimah, Drake, Donald R., Duque, Alvaro, Durigan, Giselda, Eichhorn, Karl, Eler, Eduardo Schmidt, Enoki, Tsutomu, Ensslin, Andreas, Fandohan, Adandé Belarmain, Farwig, Nina, Feeley, Kenneth J., Fischer, Markus, Forshed, Olle, Garcia, Queila Souza, Garkoti, Satish Chandra, Gillespie, Thomas W., Gillet, Jean-Francois, Gonmadje, Christelle, Granzow-de la Cerda, Iñigo, Griffith, Daniel M., Grogan, James, Hakeem, Khalid Rehman, Harris, David J., Harrison, Rhett D., Hector, Andy, Hemp, Andreas, Homeier, Jürgen, Hussain, M. Shah, Ibarra-Manríquez, Guillermo, Hanum, I. Faridah, Imai, Nobuo, Jansen, Patrick A., Joly, Carlos Alfredo, Joseph, Shijo, Kartawinata, Kuswata, Kearsley, Elizabeth, Kelly, Daniel L., Kessler, Michael, Killeen, Timothy J., Kooyman, Robert M., Laumonier, Yves, Laurance, Susan G., Laurance, William F., Lawes, Michael J., Fletcher, Susan G., Lindsell, Jeremy, Lovett, Jon, Lozada, Jose, Lu, Xinghui, Lykke, Anne Mette, Mahmud, Khairil Bin, Mahayani, Ni Putu Diana, Mansor, Asyraf, Marshall, Andrew R., Martin, Emanuel H., Calderado Leal Matos, Darley, Meave, Jorge A., Melo, Felipe P.L., Mendoza, Zhofre Huberto Aguirre, Metali, Faizah, Medjibe, Vincent P., Metzger, Jean Paul, Metzker, Thiago, Mohandass, D., Munguía-Rosas, Miguel A., Muñoz, Rodrigo, Nurtjahy, Eddy, de Oliveira, Eddie Lenza, Onrizal, Parolin, Pia, Parren, Marc, Parthasarathy, N., Paudel, Ekananda, Perez, Rolando, Pérez-García, Eduardo A., Pommer, Ulf, Poorter, Lourens, Qie, Lan, Piedade, Maria Teresa F., Rodriguez Pinto, José Roberto, Poulsen, Axel Dalberg, Poulsen, John R., Powers, Jennifer S., Prasad, Rama Chandra, Puyravaud, Jean-Philippe, Rangel, Orlando, Reitsma, Jan, Rocha, Diogo S.B., Rolim, Samir, Rovero, Francesco, Rozak, Andes, Ruokolainen, Kalle, Rutishauser, Ervan, Rutten, Gemma, Mohd. Said, Mohd. Nizam, Saiter, Felipe Z., Saner, Philippe, Santos, Braulio, dos Santos, João Roberto, Sarker, Swapan Kumar, Schmitt, Christine B., Schoengart, Jochen, Schulze, Mark, Sheil, Douglas, Sist, Plinio, Souza, Alexandre F., Spironello, Wilson Roberto, Sposito, Tereza, Steinmetz, Robert, Stevart, Tariq, Suganuma, Marcio Seiji, Sukri, Rahayu, Sultana, Aisha, Sukumar, Raman, Sunderland, Terry, Supriyadi, Suresh, H.S., Suzuki, Eizi, Tabarelli, Marcelo, Tang, Jianwei, Tanner, Ed V.J., Targhetta, Natalia, Theilade, Ida, Thomas, Duncan, Timberlake, Jonathan, de Morisson Valeriano, Márcio, van Valkenburg, Johan, Van Do, Tran, Van Sam, Hoang, Vandermeer, John H., Verbeeck, Hans, Vetaas, Ole Reidar, Adekunle, Victor, Vieira, Simone A., Webb, Campbell O., Webb, Edward L., Whitfeld, Timothy, Wich, Serge, Williams, John, Wiser, Susan, Wittmann, Florian, Yang, Xiaobo, Adou Yao, C. Yves, Yap, Sandra L., Zahawi, Rakan A., Zakaria, Rahmad, and Zang, Runguo (2018) Phylogenetic classification of the world’s tropical forests. Proceedings of the National Academy of Sciences of the United States of America, 115 (8). pp. 1837-1842.

Rabosky, Daniel L., Chang, Jonathan, Title, Pascal O., Cowman, Peter F., Sallan, Lauren, Friedman, Matt, Kaschner, Kristin, Garilao, Cristina, Near, Thomas J., Coll, Marta, and Alfaro, Michael E. (2018) An inverse latitudinal gradient in speciation rate for marine fishes. Nature, 559 (7714). pp. 392-395.

Yang, Yuchen, Li, Jianfang, Yang, Shuhuan, Li, Xinnian, Fang, Lu, Zhong, Cairong, Duke, Norman C., Zhou, Renchao, and Shi, Suhua (2017) Effects of Pleistocene sea-level fluctuations on mangrove population dynamics: a lesson from Sonneratia alba. BMC Evolutionary Biology, 17. 22. pp. 1-14.

Kramer, Michael J., Bellwood, David R., and Taylor, Richard B. (2017) Benthic Crustacea from tropical and temperate reef locations: differences in assemblages and their relationship with habitat structure. Coral Reefs, 36 (3). pp. 971-980.

Pinsky, Malin L., Saenz-Agudelo, Pablo, Salles, Océane C., Almany, Glenn R., Bode, Michael, Berumen, Michael L., Andréfouët, Serge, Thorrold, Simon R., Jones, Geoffrey P., and Planes, Serge (2017) Marine dispersal scales are congruent over evolutionary and ecological time. Current Biology, 27 (1). pp. 149-154.

Cruz, Geyner A.S., Zizka, Georg, Silvestro, Daniele, Leme, Elton M.C., Schulte, Katharina, and Benko-Iseppon, Ana M. (2017) Molecular phylogeny, character evolution and historical biogeography of Cryptanthus Otto & A. Dietr. (Bromeliaceae). Molecular Phylogenetics and Evolution, 107. pp. 152-165.

Heatwole, Harold, Grech, Alana, and Marsh, Helene (2017) Paleoclimatology, paleogeography, and the evolution and distribution of sea kraits (Serpentes; Elapidae; Laticauda). Herpetological Monographs, 31 (1). pp. 1-17.

Cowman, Peter F., Parravicini, Valeriano, Kulbicki, Michel, and Floeter, Sergio R. (2017) The biogeography of tropical reef fishes: endemism and provinciality through time. Biological Reviews, 92 (4). pp. 2112-2130.

Dunning, Luke T., Liabot, Anne-Lise, Olofsson, Jill K., Smith, Emma K., Vorontsova, Maria S., Besnard, Guillaume, Simpson, Kimberley J., Lundgren, Marjorie R., Addicott, Eda, Gallagher, Rachael V., Chu, Yingying, Pennington, R. Toby, Christin, Pascal-Antoine, and Lehmann, Caroline E.R. (2017) The recent and rapid spread of Themeda triandra. Botany Letters, 164 (4). pp. 327-337.

Revell, B., Couper, P., Wilson, S., Amey, A., and Hoskin, C.J. (2017) A significant range extension for the Border Ranges Leaf-tailed Gecko, Saltuarius swaini (Wells & Wellington, 1985) (Reptilia: Carphodactylidae). Memoirs of the Queensland Museum - Nature, 60. pp. 185-191.

Siqueira Correa, Alexandre C., Oliveira-Santos, Luiz Gustavo R., Cowman, Peter F., and Floeter, Sergio (2016) Evolutionary processes underlying latitudinal differences in reef fish biodiversity. Global Ecology and Biogeography, 25 (12). pp. 1466-1476.

Pintor, Anna F.V., Schwarzkopf, Lin, and Krockenberger, Andrew K. (2016) Hydroregulation in a tropical dry-skinned ectotherm. Oecologia, 182 (4). pp. 925-931.

Hodge, Jennifer R., and Bellwood, David R. (2016) The geography of speciation in coral reef fishes: the relative importance of biogeographical barriers in separating sister-species. Journal of Biogeography, 43 (7). pp. 1324-1335.

Staunton, Kyran M., Nakamura, Akihiro, Burwell, Chris J., Robson, Simon K.A., and Williams, Stephen E. (2016) Elevational distribution of flightless ground beetles in the tropical rainforests of north-eastern Australia. PLoS ONE, 11 (5). pp. 1-21.

Pintor, Anna F.V., Schwarzkopf, Lin, and Krockenberger, Andrew K. (2016) Extensive acclimation in ectotherms conceals interspecific variation in thermal tolerance limits. PLoS ONE, 11 (3). e0150408. pp. 1-15.

Andreakis, Nikolaos, Costello, Paul, Zanolla, Marianela, Saunders, Gary W., and Mata, Leonardo (2016) Endemic or introduced? Phylogeography of Asparagopsis (Florideophyceae) in Australia reveals multiple introductions and a new mitochondrial lineage. Journal of Phycology, 52 (1). pp. 141-147.

Nowrouzi, Somayeh, Andersen, Alan N., Macfayden, Sarina, Staunton, Kyran M., Vanderwal, Jeremy, and Robson, Simon K.A. (2016) Ant diversity and distribution along elevation gradients in the Australian Wet Tropics: the importance of seasonal moisture stability. PLoS ONE, 11 (4). e0153420.

Cuthill, Jennifer F. Hoyal, Sewell, Kim B., Cannon, Lester R.G., Charleston, Michael A., Lawler, Susan, Littlewood, D. Timothy J., Olson, Peter D., and Blair, David (2016) Australian spiny mountain crayfish and their temnocephalan ectosymbionts: an ancient association on the edge of coextinction? Proceedings of the Royal Society of London Series B, Biological Sciences, 283 (1831). 20160585. pp. 1-10.

Cooper, W.E., Kudo, H., and Duke, Norman C. (2016) Bruguiera hainesii C.G.Rogers (Rhizophoraceae), an endangered species recently discovered in Australia. Austrobaileya, 9 (4). pp. 481-488.

Costion, Craig M., Lowe, Andrew J., Rossetto, Maurizio, Kooyman, Robert M., Breed, Martin F., Ford, Andrew, and Crayn, Darren M. (2016) Building a plant DNA barcode reference library for a diverse tropical flora: an example from Queensland, Australia. Diversity, 8 (1). pp. 1-5.

Hoskin, Conrad (2016) Cape Melville’s lost world. Australian Geographic Adventure, 132.

Clarke, Charles, and Moran, Jonathan A. (2016) Climate, soils and vicariance: their roles in shaping the diversity and distribution of Nepenthes in Southeast Asia. Plant and Soil, 403 (1). pp. 37-51.

Thornhill, Andrew H., Mishler, Brent D., Knerr, Nunzio J., González-Orozco, Carlos E., Costion, Craig M., Crayn, Darren M., Laffan, Shawn W., and Miller, Joseph T. (2016) Continental-scale spatial phylogenetics of Australian angiosperms provides insights into ecology, evolution and conservation. Journal of Biogegoraphy, 43 (11). pp. 2085-2098.

Gerlach, Gabriele, Atema, Jelle, Raupach, Michael J., Deister, Fabian, Müeller, Anke, and Kingsford, Michael J. (2016) Cryptic species of cardinalfish with evidence for old and new divergence. Coral Reefs, 35 (2). pp. 437-450.

Goetze, Márcia, Schulte, Katharina, Palma-Silva, Clarisse, Zanella, Camila M., Buttow, Miriam V., Capra, Fernanda, and Bered, Fernanda (2016) Diversification of Bromelioideae (Bromeliaceae) in the Brazilian Atlantic rainforest: a case study in Aechmea subgenus Ortgiesia. Molecular Phylogenetics and Evolution, 98. pp. 346-357.

Mizerek, Toni L., Baird, Andrew H., Beaumont, Linda J., and Madin, Joshua S. (2016) Environmental tolerance governs the presence of reef corals at latitudes beyond reef growth. Global Ecology and Biogeography, 25 (8). pp. 979-987.

Correia, Marta, Montesinos, Daniel, French, Kristine, and Rodríguez-Echeverría, Susana (2016) Evidence for enemy release and increased seed production and size for two invasive Australian acacias. Journal of Ecology, 104 (5). pp. 1391-1399.

van der Merwe, Marlien, Crayn, Darren M., Ford, Andrew J., Weston, Peter H., and Rossetto, Maurizio (2016) Evolution of Australian Cryptocarya (Lauraceae) based on nuclear and plastid phylogenetic trees: evidence of recent landscape-level disjunctions. Australian Systematic Botany, 29 (2). pp. 157-166.

Guo, Zixiao, Huang, Yelin, Chen, Yongmei, Duke, Norman C., Zhong, Cairong, and Shi, Sugua (2016) Genetic discontinuities in a dominant mangrove Rhizophora apiculata (Rhizophoraceae) in the Indo-Malesian region. Journal of Biogeography, 43. pp. 1856-1868.

Leprieur, Fabien, Colosio, Simona, Descombes, Patrice, Parravicini, Valeriano, Kulbicki, Michel, Cowman, Peter F., Bellwood, David R., Mouillot, David, and Pellissier, Loïc (2016) Historical and contemporary determinants of global phylogenetic structure in tropical reef fish faunas. Ecography, 39 (9). pp. 825-835.

Xiao, Sa, Callaway, Ragan M., Graebner, Ryan, Hierro, José L., and Montesinos, Daniel (2016) Modeling the relative importance of ecological factors in exotic invasion: The origin of competitors matters, but disturbance in the non-native range tips the balance. Ecological Modelling, 335. pp. 39-47.

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Dibattista, Joseph, Choat, J. Howard, Gaither, Michelle R., Hobbs, Jean-Paul A., Lozano-Cortes, Diego F., Myers, Robert F., Paulay, Gustav, Rocha, Luiz A., Toonen, Robert J., Westneat, Mark W., and Berumen, Michael L. (2016) On the origin of endemic species in the Red Sea. Journal of Biogeography, 43 (1). pp. 13-30.

Huang, Jian-Feng, Li, Lang, van der Werff, Henk, Li, Hsi-Wen, Rohwer, Jens G., Crayn, Darren M., Meng, Hong-Hu, van der Merwe, Marlien, Conran, John G., and Li, Jie (2016) Origins and evolution of cinnamon and camphor: a phylogenetic and historical biogeographical analysis of the Cinnamomum group (Lauraceae). Molecular Phylogenetics and Evolution, 96. pp. 33-44.

González-Orozco, Carlos E., Pollock, Laura J., Thornhill, Andrew H., Mishler, Brent D., Knerr, Nunzio, Laffan, Shawn W., Miller, Joseph T., Rosauer, Dan F., Faith, Daniel P., Nipperess, David A., Kujala, Heini, Linke, Simon, Butt, Nathalie, Kulheim, Carsten, Crisp, Michael D., and Gruber, Bernd (2016) Phylogenetic approaches reveal biodiversity threats under climate change. Nature Climate Change, 6 (12). pp. 1110-1115.

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Book Chapter

Murphy, Daniel J., and Crayn, Darren (2017) Australian comparative phytogeography: a review. In: Ebach, Malte C., (ed.) Handbook of Australasian Biogeography. CRC Press, Boca Raton, FL, USA, pp. 129-154.

Duke, Norman C. (2017) Mangrove floristics and biogeography revisited: further deductions from biodiversity hot spots, ancestral discontinuities and common evolutionary processes. In: Rivera-Monroy, Victor H., Lee, Shing Yip, Kristensen, Erik, and Twilley, Robert R., (eds.) Mangrove Ecosystems: A Global Biogeographic Perspective - Structure, Function and Services. Springer International Publishing, Cham, Switzerland, pp. 17-53.

Zanolla, Marianela, and Andreakis, Nikos (2016) Towards an integrative phylogeography of invasive marine seaweeds, based on multiple lines of evidence. In: Hu, Zi-Min, and Fraser, Ceridwen, (eds.) Seaweed Phylogeography: adaptation and evolution of seaweeds under environmental change. Springer, Dordrecht, The Netherlands, pp. 187-207.

Report

Duke, Norman, and Lee, Shing Yip (2024) 2.4. The diversity of mangroves. Towards an authoritative list of the world’s mangrove plants. Report Section. Global Mangrove Alliance.

Thesis

Zhang, Jia (2023) Exploiting whole-genome sequencing to understand the evolution of corals and their symbionts. PhD thesis, James Cook University.

Lau, Sally Cheuk Ying (2022) Quaternary evolutionary persistence of Southern Ocean benthic taxa. PhD thesis, James Cook University.

Grinblat, Mila (2021) Biogeography, reproductive biology and early development in scleractinian corals. PhD thesis, James Cook University.

Joyce, Elizabeth Marie (2021) Evolution of the northern Australian flora: role of the Sunda-Sahul Floristic Exchange. PhD thesis, James Cook University.

Hirschfeld, Maximilian (2021) Population structure and connectivity of demersal sharks in isolation. PhD thesis, James Cook University.

Terraneo, Tullia Isotta (2020) Diversity, phylogeography and taxonomy of hard corals in the genus Porites. PhD thesis, James Cook University.

Siqueira Correa, Alexandre (2020) The evolution, macroecology and biogeography of coral reef fishes: a trophic perspective. PhD thesis, James Cook University.

Simpson, Lalita (2019) Phylogenomic insights into the spatio-temporal evolution of the Asian and Australasian Bulbophyllum (Orchidaceae). PhD thesis, James Cook University.

Zozaya, Stephen Michael (2019) Using pheromones to understand cryptic lizard diversity. PhD thesis, James Cook University.

Kutt, Alexander Sulev (2004) Patterns in the composition and distribution of the vertebrate fauna, desert uplands bioregion, Queensland. PhD thesis, James Cook University.