A

Abed, Jassim M., Ali, Atheer H., Yaseen, Ali T., Al-Faisal, Abbas, Mutlak, Falah, Jassim, Furat K., Jerry, Dean R., and Jawad, Laith A. (2025) Barramundi (Lates calcarifer) from Iraq: a new record for the Arabian Gulf, with a highlight on it genetic origins and description of two skeletal deformities. New Zealand Journal of Zoology, 52 (1). pp. 40-54.

Amira, Kafia Islam, Rahman, Mohammad Redwanur, Sikder, Suchandan, Khatoon, Helen, Afruj, Jinat, Haque, Mohammad Ekramul, and Minhaz, Tashrif Mahmud (2021) Data on Growth, survivability, water quality and hemato-biochemical indices of Nile Tilapia (Oreochromis niloticus) fry fed with selected marine microalgae. Data in Brief, 38. 107422.

Amira, Kafia Islam, Rahman, Mohammad Redwanur, Khatoon, Helena, Sikder, Suchandan, Islam, Skm Azizul, Afruj, Jinat, Jamal, Foujia, and Haque, Mohammad Ekramul (2021) Effects of microalgae inoculated diet on growth performance and blood parameters of Nile tilapia (Oreochromis niloticus). Bangladesh Journal of Fisheries, 33 (2). pp. 243-254.

B

Brink-Hull, M., Cyrus, M.D., Macey, B.M., Rhode, C., Hull, K.L., and Roodt-Wilding, R. (2022) Dietary effects on the reproductive performance of the sea urchin Tripneustes gratilla l: Implications for broodstock conditioning. Aquaculture, 552. 738035.

Brink-Hull, M., Cyrus, M.D., Macey, B.M., Rhode, C., Hull, K.L., and Roodt-Wilding, R. (2022) Dietary effects on the reproductive performance of the sea urchin Tripneustes gratilla ll: Implications for offspring performance. Aquaculture, 553. 738034.

Borkens, Yannick, and Koppe, Paul (2022) Mytilicola orientalis. Aquaculture International, 30. pp. 2741-2749.

Barton, Jonathan (2020) Mitigating the impact of the Acropora-eating flatworm, Prosthiostomum acroporae on captive Acropora coral colonies. PhD thesis, James Cook University.

Bolton, John J., Cyrus, Mark, Brand, Morgan J., Joubert, Michael, and Macey, Brett M. (2016) Why grow Ulva? Its potential role in the future of aquaculture. Perspectives in Phycology, 3 (3). pp. 113-120.

C

Chen, Yan, Ma, Jun, Yong, Yoong-Soon, Chen, Yonggan, Chen, Bing, Cao, Junming, Peng, Kai, Wang, Guaxia, Huang, Hai, and Loh, Jiun-Yan (2024) Impacts of Black Soldier Fly (Hermetia illucens) Larval Meal on Intestinal Histopathology and Microbiome Responses in Hybrid Grouper (Epinephelus fuscoguttatus ♀ × E. lanceolatus ♂): A Comprehensive Analysis. Animals, 14 (24). 3596.

Cabral, Reniel B., Geronimo, Rollan C., Mamauag, Samuel S., Silva, Juan A., Mancao, Roquelito H., and Atrigenio, Michael P. (2023) Ensuring Aquatic Food Security in the Philippines. The Philippine Journal of Fisheries, 30 (2). pp. 298-313.

Camus, Thomas, Rolla, Lucrezia, Jiang, Jufeng, and Zeng, Chaoshu (2021) Effects of microalgal food quantity on several productivity-related parameters of the calanoid copepod Bestiolina similis (Calanoida: Paracalanidae). Frontiers in Marine Science, 8. 812240.

Cabral, Reniel B., Bradley, Darcy, Mayorga, Juan, Goodell, Whitney, Friedlander, Alan M., Sala, Enric, Costello, Christopher, and Gaines, Steven D. (2021) Reply to Hilborn: We agree that MPAs can improve fish catch in the South and Southeast Asia. Proceedings of the National Academy of Sciences of the United States of America, 118 (17). e2100660118.

Cabral, Reniel B., Bradley, Darcy, Mayorga, Juan, Goodell, Whitney, Friedlander, Alan M., Sala, Enric, Costello, Christopher, and Gaines, Steven D. (2021) Reply to Ovando et al.: How connected are global fisheries? Proceedings of the National Academy of Sciences of the United States of America, 118 (23). e2100364118.

Cobcroft, Jennifer, Bell, Rob, Fitzgerald, Jessica, and Jerry, Dean (2020) Northern Australia aquaculture situational analysis. Report. CRCNA, Townsville, QLD, Australia.

Cyrus, Mark D., Bolton, John J., and Macey, Brett M. (2019) The use of stable isotope ratios δ 13 C and δ 15 N to track the incorporation of Ulva and other important dietary ingredients into the gonads of the sea urchin Tripneustes gratilla. Aquaculture Nutrition, 26 (1). pp. 174-185.

Cabral, Reniel B., and Geronimo, Rollan C. (2018) How important are coral reefs to food security in the Philippines? Diving deeper than national aggregates and averages. Marine Policy, 91. pp. 136-141.

Costello, Christopher, Ovando, Daniel, Clavelle, Tyler, Kent Strauss, C., Hilborn, Ray, Melnychuk, Michael C., Branch, Trevor A., Gaines, Steven D., Szuwalski, Cody S., Cabral, Reniel B., Rader, Douglas N., and Leland, Amanda (2016) Global fishery prospects under contrasting management regimes. Proceedings of the National Academy of Sciences of the United States of America, 113 (18). pp. 5125-5129.

Cabral, Reniel B., Gaines, Steven D., Lim, May T., Atrigenio, Michael P., Mamauag, Samuel S., Pedemonte, Gerold C., and Aliño, Porfirio M. (2016) Siting marine protected areas based on habitat quality and extent provides the greatest benefit to spatially structured metapopulations. Ecosphere, 7 (11). e01533.

Cyrus, Mark, Bolton, John J., and Macey, Brett M. (2015) The role of the green seaweed Ulva as a dietary supplement for full life-cycle grow-out of Tripneustes gratilla. Aquaculture, 446. pp. 187-197.

Cyrus, M.D., Bolton, J.J., Scholtz, R., and Macey, B. (2014) The advantages of Ulva (Chlorophyta) as an additive in sea urchin formulated feeds: effects on palatability, consumption and digestibility. Aquaculture Nutrition, 21 (5). pp. 578-591.

Cyrus, Mark D., Bolton, John J., De Wet, Lourens, and Macey, Brett M. (2013) The development of a formulated feed containing Ulva (Chlorophyta) to promote rapid growth and enhanced production of high quality roe in the sea urchin Tripneustes gratilla (Linnaeus). Aquaculture Research, 45 (1). pp. 159-176.

D

De Vos, Bas C., Cyrus, Mark D., Bolton, John J., and Macey, Brett M. (2024) Effect of basket height and stocking density on production of the sea urchin Tripneustes gratilla: insights and recommendations. Aquaculture International, 32. pp. 4991-5016.

Donelson, Jennifer M., Romans, Pascal, Yamanaka, Sakuto, Kinoshita, Masato, and Roux, Natasha (2023) Anemonefish Husbandry. In: Laudet, Vincent, and Ravasi, Timothy, (eds.) Evolution, Development and Ecology of Anemonefishes: Model Organisms for Marine Science. CRC Press, Boca Raton, Florida, USA, pp. 237-251.

De Vos, Bas C., Cyrus, Mark D., Macey, Brett M., Batik, Theodore, and Bolton, John J. (2023) Combining computer vision and standardised protocols for improved measurement of live sea urchins for research and industry. Aquaculture, Fish and Fisheries, 3 (6). pp. 507-517.

Doll, Peter C., Caballes, Ciemon F., Hoey, Andrew S., Uthicke, Sven, Ling, Scott D., and Pratchett, Morgan S. (2022) Larval settlement in echinoderms: a review of processes and patterns. Oceanography and Marine Biology, 60. pp. 433-494.

Dawson, Amanda L., Li, Joan Y.Q., and Kroon, Frederieke J. (2022) Plastics for dinner: Store-bought seafood, but not wild-caught from the Great Barrier Reef, as a source of microplastics to human consumers. Environmental Advances, 8. 100249.

Diggins, R., Burrie, R., Ariel, E., Ridley, J., Olsen, J., Schultz, S., Pettett-Willmett, G., Hemming, G., and Lloyd, J. (2022) A review of welfare indicators for sea turtles undergoing rehabilitation, with emphasis on environmental enrichment. Animal Welfare, 31 (2). pp. 219-230.

F

Free, Christopher M., Cabral, Reniel B., Froehlich, Halley E., Battista, Willow, Ojea, Elena, O’Reilly, Erin, Palardy, James E., García Molinos, Jorge, Siegel, Katherine J., Arnason, Ragnar, Juinio-Meñez, Marie Antonette, Fabricius, Katharina, Turley, Carol, and Gaines, Steven D. (2022) Expanding ocean food production under climate change. Nature, 605. pp. 490-496.

H

Hair, Cathy, Foale, Simon, Kinch, Jeff, Daniels, Nicholas, Minimulu, Peter, and Southgate, Paul C. (2024) Future prospects for sea cucumber mariculture in Papua New Guinea and the Pacific Islands. In: Mercier, Annie, Hamel, Jean François, Suhrbier, Andrew D., and Pearce, Christopher M., (eds.) The World of Sea Cucumbers: Challenges, Advances, and Innovations. Elsevier, pp. 801-817.

Harper, Sarah, and Kleiber, Danika (2023) Towards gender inclusivity and equality in small-scale fisheries. Report Section. FAO, Duke University & WorldFish, Rome, FAO; Durham, USA, Duke University; Penang, Malaysia, WorldFish..

Hair, Cathy, Militz, Thane A., Daniels, Nicholas, and Southgate, Paul C. (2022) Performance of a trial sea ranch for the commercial sea cucumber, Holothuria scabra, in Papua New Guinea. Aquaculture, 547. 737500.

Harohau, Daykin Otowauri (2020) Understanding the social dimensions of small-scale tilapia aquaculture in rural Solomon Islands. PhD thesis, James Cook University.

I

Islam, Kafia, Amira, Helena Khatoon, Rahman, Mohammad Redwanur, Sikder, Suchandan, Afruj, Jinat, Islam, Mohammad Jabedul, and Jamal, Foujia (2023) Dietary influence of selected microalgae on carotenoid concentration, nutrition and biochemical composition of fry Nile tilapia. Journal of Innovation in Applied Research, 6 (1). pp. 10-22.

K

Kumanan, Karthiga, Delisle, Lizenn, Angelucci, Connie, Hunter, Ryan B.J., Rudenko, Oleksandra, Carson, Jeremy, Morrison, Richard N., Barnes, Andrew S.C., and Hutson, Kate (2024) Serological and molecular typing of Tenacibaculum maritimum from New Zealand farmed salmon, Oncorhynchus tshawytscha. Aquaculture, 578. 740055.

Kidgell, Joel Thomas (2021) The structure and bioactivity of ulvan, a sulfated polysaccharide from Ulva (chlorophyta). PhD thesis, James Cook University.

L

Loh, Jiun-Yan, Soo, Michelle Oi-Yoon, Gunasekaran, Baskaran, and Andin, Victor Charlie (2022) Advances in Aquaculture. UCSI Press, Kuala Lumpur, Malaysia.

Lee, Po-Tsang, Yamamoto, Fernando Y., Low, Chen-Fei, Loh, Jiun Yan, and Chong, Chou-Min (2021) Gut Immune System and the Implications of Oral-Administered Immunoprophylaxis in Finfish Aquaculture. Frontiers in Immunology, 12. 773193.

Loh, Jiun Yan, and Ting, Adeline Su Yien (2017) Bioprospecting Gastrointestinal Microflora of Common Fishes for Disease Control in Aquaculture. In: Kalia, Vipin Chandra, Shouche, Yogesh, Purohit, Hemant J., and Rahi, Praveen, (eds.) Mining of Microbial Wealth and MetaGenomics. Springer, Singapore, Singapore, pp. 161-182.

Loh, Jiun-Yan, Ong, Han Kiat Alan, Hii, Yii Siang, Smith, Thomas J., Lock, Malcolm M., and Khoo, Gideon (2013) Impact of Potential Food Sources on the Life Table of the Cladoceran, Moina macrocopa. The Israeli Journal of Aquaculture - Bamidgeh, 65. 820.

Loh, Jiun Yan, Ong, Han Kiat Alan, Hii, Yii Siang, Smith, Thomas J., Lock, Malcolm M., and Khoo, Gideon (2012) Highly Unsaturated Fatty Acid (HUFA) Retention in the Freshwater Cladoceran, Moina macrocopa, Enriched With Lipid Emulsions. Israeli Journal of Aquaculture - Bamidgeh, 64.

Loh, Jiun-Yan, How, Chee Wun, Hii, Yii Siang, Khoo, Gideon, and Ong, Alan Han Kiat (2009) Fish faeces as a potential food source for cultivating the water flea, Moina macrocopa. Journal of Science and Technology in the Tropics, 5 (1). pp. 5-10.

M

Moran, Megan N., Jones, D.B., Jensen, S.A., Marcoli, R., and Jerry, D. R. (2024) Optimising commercial traits through gene editing in aquaculture: Strategies for accelerating genetic improvement. Reviews in Aquaculture, 16 (3). pp. 1127-1159.

Mohamad, Suhaini, Liew, Hon Jung, Zainuddin, Rabiatul Adawiyyah, Rahmah, Sharifah, Waiho, Khor, Ghaffar, Mazlan Abd, Nhan, Hua Thai, Loh, Jiun‐Yan, Lim, Leong‐Seng, Chang, Yumei, Liang, Liqun, and De Boeck, Gudrun (2021) High environmental temperature and low pH stress alter the gill phenotypic plasticity of Hoven's carp Leptobarbus hoevenii. Journal of Fish Biology, 99 (1). pp. 206-218.

Magnusson, Marie, Vucko, Matthew J., Neoh, Tze Loon, and de Nys, Rocky (2020) Using oil immersion to deliver a naturally-derived, stable bromoform product from the red seaweed Asparagopsis taxiformis. Algal Research, 51. 102065.

N

Napier, Thomas, and Lee, Ickjai (2023) Using mobile-based augmented reality and object detection for real-time Abalone growth monitoring. Computers and Electronics in Agriculture, 207. 107744.

Nik Mohamad Nek Rahimi, Naqiuddin, Natrah, Ikhsan, Loh, Jiun-Yan, Ervin Ranzil, Francis Kumar, Gina, Madi, Lim, Swee-Hua Erin, Lai, Kok-Song, and Chong, Chou-Min (2022) Phytocompounds as an Alternative Antimicrobial Approach in Aquaculture. Antibiotics, 11 (4). 469.

Navarro, Alejandro, Young, Mary, Macreadie, Peter I., Nicholson, Emily, and Ierodiaconou, Daniel (2021) Mangrove and saltmarsh distribution mapping and land cover change assessment for south-eastern Australia from 1991 to 2015. Remote Sensing, 13 (8). 1450.

Navarro, Alejandro, Young, Mary, Allan, Blake, Carnell, Paul, Macreadie, Peter, and Ierodiaconou, Daniel (2020) The application of Unmanned Aerial Vehicles (UAVs) to estimate above-ground biomass of mangrove ecosystems. Remote Sensing of Environment, 242. 111747.

Nunes, Moira, Pereira, Adriana, Ferreira, Jaime, and Yasumaru, Fanny (2009) Evaluation of the Microalgae Paste Viability Produced in a Mollusk Hatchery in Southern Brazil. Journal of the World Aquaculture Society, 40 (1). pp. 87-94.

O

Onomu, Abigail J., Vine, Niall G., Cyrus, Mark D., Macey, Brett M., and Bolton, John J. (2020) The effect of fresh seaweed and a formulated diet supplemented with seaweed on the growth and gonad quality of the collector sea urchin, Tripneustes gratilla, under farm conditions. Aquaculture Research, 51 (10). pp. 4087-4102.

P

Pardedea, Maria Agustina, Widanarni, Sukenda, Yuhana, Munti, and Loh, Jiun-Yan (2025) Effects of dietary synbiotic supplementation on digestive enzyme, total Vibrio count, and hepatopancreas of Pacific white shrimp, Penaeus vannamei challenged with Vibrio parahaemolyticus. Journal of Applied Aquaculture. (In Press)

Phang, Key-Seem, Pung, Qi-En, and Loh, Jiun-Yan (2022) Advances in shrimp aquaculture technology. In: Loh, Jiun Yan, Soo, Michelle Oi-Yoon, Gunasekaran, Baskaran, and Andin, Victor Charlie, (eds.) Advances in Aquaculture. UCSI Press, Kuala Lumpur, Malaysia, pp. 29-37.

Plotieau, Thomas, Baele, Jean-Marc, Vaucher, Romain, Hasler, Claude-Alain, Koudad, Dunia, and Eeckhaut, Igor (2013) Analysis of the impact of Holothuria scabra intensive farming on sediment. Cahier de Biologie Marine, 54. pp. 703-711.

S

Sikder, Suchandan, Jannat, Turfatul, Smrity, Nahida Jaman, Karmakar, Sharnalika, Sraboni, Nusrat Zahan, Rahman, Mohammad Redwanur, Najiah, Musa, Sarkar, Eti Rani, Khatoon, Helena, and UNSPECIFIED (2024) The antibacterial potential of eukaryotic marine microalgaeagainst pathogens from chicken, dog and aquaculture. Journal of Sustainability Science and Management, 19 (1). pp. 74-86.

Shamsuddin, Md, Hossain, Mohammad Belal, Rahman, Moshiur, Tazim, Md. Farhan, Ali, Md. Romjan, Kawla, Mst Salamun, Begum, Tajmahal, Albeshr, Mohammed Fahad, and Arai, Takaomi (2023) Impact of COVID-19 Pandemic on Fisheries Sector and Actions Taken to Cope with the Situation: A Case Study from a Top Fish-Producing Country. Sustainability, 15 (4). 3605.

Saleh, Alzayat, Jones, David, Jerry, Dean, and Azghadi, Mostafa Rahimi (2023) MFLD-net: a lightweight deep learning network for fish morphometry using landmark detection. Aquatic Ecology, 57. pp. 913-931.

Saleh, Alzayat (2023) Novel deep learning architectures for marine and aquaculture applications. PhD thesis, James Cook University.

Sharven, R.M., and Loh, Jiun-Yan (2022) Insect-based aquafeeds: A sustainable solution for fish nutrition. In: Loh, Jiun-Yan, Soo, Michelle Oi-Yoon, Gunasekaran, Baskaran, and Andin, Victor Charlie, (eds.) Advances in Aquaculture. UCSI Press, Kuala Lumpur, Malaysia, pp. 86-94.

U

Ulkhaq, Mohammad Faizal, Kenconojati, Hapsari, Budi, Darmawan Setia, Pardede, Maria Agustina, and Loh, Jiun-Yan (2024) Chloramphenicol Residues and Bacterial Contamination in Farmed African Catfish (Clarias gariepinus) from Banyuwangi Traditional Markets: A Risk Assessment. Jurnal Medik Veteriner, 7 (2). pp. 244-254.

Ulkhaq, Mohammad Faizal, Safitri, Kavina Renda, Asrin, Davia Ilyaning, Sulmartiwi, Laksmi, and Loh, Jiun-Yan (2024) Effects of Salinity Changes on Hematological Blood Parameters and Stress Responses in Red Tilapia (Oreochromis spp.) Infected with Vibrio harveyi. Borneo Journal of Resource Science and Technology, 14 (2). pp. 54-67.

V

Varijakzhan, Disha, Loh, Jiun-Yan, Yap, Wai-Sum, Yusoff, Khatijah, Seboussi, Rabiha, Lim, Swee-Hua Erin, Lai, Kok-Song, and Chong, Chou-Min (2021) Bioactive Compounds from Marine Sponges: Fundamentals and Applications. Marine Drugs, 19 (5). 246.

W

Wang, Lin, Wang, Shuhong, Zeng, Chaoshu, Wang, Yuyue, and Zeng, Chunxiao (2021) Effects of food concentration and photoperiod on egg production, female life expectancy and population dynamics of the paracalanid copepod, Bestiolina amoyensis. Frontiers in Marine Science, 8. 788744.

Y

Yen, Jian D.L., Cabral, Reniel B., Cantor, Mauricio, Hatton, Ian, Kortsch, Susanne, Patrício, Joana, and Yamamichi, Masato (2016) Linking structure and function in food webs: maximization of different ecological functions generates distinct food web structures. Journal of Animal Ecology, 85 (2). pp. 537-547.