A

Argirion, Ilona, Pfeiffer, Ruth M., Proietti, Carla, Coghill, Anna E., Yu, Kelly J., Middeldorp, Jaap M., Sarathkumara, Yomani D., Hsu, Wan-Lun, Chien, Yin-Chu, Lou, Pei-Jen, Wang, Cheng-Ping, Rothman, Nathaniel, Lan, Qing, Chen, Chien-Jen, Mbulaiteye, Sam M., Jarrett, Ruth F., Glimelius, Ingrid, Smedby, Karin E., Hjalgrim, Henrik, Hildesheim, Allan, Doolan, Denise L., and Liu, Zhiwei (2023) Comparative Analysis of the Humoral Immune Response to the EBV Proteome across EBV-Related Malignancies. Cancer Epidemiology, Biomarkers & Prevention, 32 (5). pp. 687-696.

Aghajani, Marra Jai, Yang, Tao, Schmitz, Ulf, James, Alexander, McCafferty, Charles Eugenio, de Souza, Paul, Niles, Navin, and Roberts, Tara L. (2020) Epithelial-to-mesenchymal transition and its association with PD-L1 and CD8 in thyroid cancer. Endocrine Connections, 9. pp. 1028-1041.

Amirkhah, Raheleh, Naderi-Meshkin, Hojjat, Shah, Jaynish S., Dunne, Philip D., and Schmitz, Ulf (2019) The intricate interplay between epigenetic events, alternative splicing and noncoding RNA deregulation in colorectal cancer. Cells, 8 (8). 929.

Amirkhah, Raheleh, Schmitz, Ulf, Linnebacher, Michael, Wolkenhauer, Olaf, and Farazmand, Ali (2015) MicroRNA-mRNA interactions in colorectal cancer and their role in tumor progression. Genes, Chromosomes and Cancer, 54 (3). pp. 129-141.

Amirkhah, R., Farazmand, A., Irfan-Maqsood, M., Wolkenhauer, O., and Schmitz, U. (2015) The role of microRNAs in the resistance to colorectal cancer treatments. Cellular and Molecular Biology, 61 (6). pp. 17-23.

Alla, Vijay, Kowtharapu, Bhavani S., Engelmann, David, Emmrich, Stephan, Schmitz, Ulf, Steder, Marc, and Pützer, Brigitte M. (2012) E2F1 confers anticancer drug resistance by targeting ABC transporter family members and Bcl-2 via the p73/DNp73-miR-205 circuitry. Cell Cycle, 11 (16). pp. 3067-3078.

B

Bailey, Charles G., Gupta, Shailendra, Metierre, Cynthia, Amarasekera, Punkaja M.S., O'Young, Patrick, Kyaw, Wunna, Laletin, Tatyana, Francis, Habib, Semaan, Crystal, Sharifi Tabar, Mehdi, Singh, Krishna P., Mullighan, Charles G., Wolkenhauer, Olaf, Schmitz, Ulf, and Rasko, John (2021) Structure–function relationships explain CTCF zinc finger mutation phenotypes in cancer. Cellular and Molecular Life Sciences, 78. pp. 7519-7536.

Blake, Stephen J., Stannard, Kimberley, Liu, Jing, Allen, Stacey, Yong, Michelle C.R., Mittal, Deepak, Aguilera, Amelia Roman, Miles, John J., Lutzky, Viviana P., Ferrari de Andrade, Lucas, Martinet, Ludovic, Colonna, Marco, Takeda, Kazuyoshi, Kühnel, Florian, Gurlevik, Engin, Bernhardt, Günter, Teng, Michele W.L., and Smyth, Mark J. (2016) Suppression of metastases using a new lymphocyte checkpoint target for cancer immunotherapy. Cancer Discovery, 6 (4). pp. 446-459.

Bhattacharya, Animesh, Schmitz, Ulf, Raatz, Yvonne, Schönherr, Madeleine, Kottek, Tina, Schauer, Marianne, Franz, Sandra, Saalbach, Anja, Anderegg, Ulf, Wolkenhauer, Olaf, Schadendorf, Dirk, Simon, Jan C., Magin, Thomas, Vera, Julio, and Kunz, Manfred (2015) miR-638 promotes melanoma metastasis and protects melanoma cells from apoptosis and autophagy. Oncotarget, 6. pp. 2966-2980.

Bhattacharya, A., Schmitz, U., Wolkenhauer, O., Schönherr, M., Raatz, Y., and Kunz, M. (2013) Regulation of cell cycle checkpoint kinase WEE1 by miR-195 in malignant melanoma. Oncogene, 32. pp. 3175-3183.

C

Curtin, Justin, Thomson, Peter, Wong, Gordon, Lam, Alfred, and Choi, Siu-Wai (2023) The Impact of Surgery on Circulating Malignant Tumour Cells in Oral Squamous Cell Carcinoma. Cancers, 15 (3). 584.

Curtin, J., Choi, S.-W., Thomson, P. J., and Lam, A.K.-y (2022) Characterization and clinicopathological significance of circulating tumour cells in patients with oral squamous cell carcinoma. International Journal of Oral and Maxillofacial Surgery, 51 (3). pp. 289-299.

Chaiyadet, Sujittra, Sotillo, Javier, Krueajampa, Watchara, Thongsen, Sophita, Smout, Michael, Brindley, Paul J., Laha, Thewarach, and Loukas, Alex (2022) Silencing of Opisthorchis viverrini Tetraspanin Gene Expression Results in Reduced Secretion of Extracellular Vesicles. Frontiers in Cellular and Infection Microbiology, 12. 827521.

D

Dewdney, Brittany (2021) Characterising the role of fructose metabolism in hepatocellular carcinoma. PhD thesis, James Cook University.

Dhungel, Bijay P., Monteuuis, Geoffray, Giardina, Caroline, Tabar, Mehdi S., Feng, Yue, Metierre, Cynthia, Ho, Sarah, Nagarajah, Rajini, Fontaine, Angela R.M., Shah, Jaynish S., Gokal, Divya, Bailey, Charles G., Schmitz, Ulf, and Rasko, John E.J. (2021) The fusion of CLEC12A and MIR223HG arises from a trans‐splicing event in normal and transformed human cells. International Journal of Molecular Sciences, 22. 12178.

Dewdney, Brittany, Alanzay, Mohammed, Gillman, Rhys, Walker, Sarah, Wankell, Miriam, Qiao, Liang, George, Jacob, Roberts, Alex, and Hebbard, Lionel (2020) The effects of fructose and metabolic inhibition on hepatocellular carcinoma. Scientific Reports, 10. 16769.

E

Elhousiny, Moustafa, Miller, Kate, Ariyawadana, Anura, and Nimmo, Alan (2021) Substance P (SP) increases the adhesion of oral squamous cell carcinoma (OSCC) to human umbilical vein endothelial cells (HUVEC) uhrough upregulating adhesion molecules; implication for metastasis. Acta Scientific Dental Sciences, 5 (2). pp. 8-18.

G

Gupta, Sunil, Read, Scott A., Shackel, Nicholas A., Hebbard, Lionel, George, Jacob, and Ahlenstiel, Golo (2019) The role of micronutrients in the infection and subsequent response to hepatitis C virus. Cells, 8 (6). 603.

Guebel, Daniel V., Schmitz, Ulf, Wolkenhauer, Olaf, and Vera, Julio (2012) Analysis of cell adhesion during early stages of colon cancer based on an extended multi-valued logic approach. Molecular BioSystems, 8. pp. 1230-1242.

H

Hamilton, Elizabeth M., Nath, Karthik D., Vangaveti, Venkat N., McCutchan, Andrew D., Marsh, Jodie L., Birchley, Andrew J., Casey, John M., McNamara, Caroline, Lai, Hock C., Morris, Edward S., Hodges, Georgina, and Irving, Ian M. (2020) A 14-year retrospective analysis of indications and outcomes of autologous haemopoietic stem cell transplantation in regional Queensland: a single-centre experience. Internal Medicine Journal, 50 (2). pp. 214-221.

Hafeez, Umbreen, Joshi, Abhishek, Bhatt, Manoj, Kelly, Jenny, Sabesan, Sabe, and Vangaveti, Venkat (2017) Clinical profile and treatment outcomes of advanced neuroendocrine tumours in rural and regional patients: a retrospective study from a regional cancer centre in North Queensland, Australia. Internal Medicine Journal, 47 (3). pp. 284-290.

K

Khoontawad, Jarinya, Intuyod, Kitti, Rucksaken, Rucksak, Hongsrichan, Nuttanan, Pairojkul, Chawalit, Pinlaor, Porntip, Boonmars, Thidarut, Wongkham, Chaisiri, Jones, Alun, Plieskatt, Jordan, Potriquet, Jeremy, Bethony, Jeffrey M., Mulvenna, Jason, and Pinlaor, Somchai (2018) Discovering proteins for chemoprevention and chemotherapy by curcumin in liver fluke infection-induced bile duct cancer. PLoS One, 13 (11). e0207405.

Khan, Faiz M., Marquardt, Stephan, Gupta, Shailendra K., Knoll, Susanne, Schmitz, Ulf, Spitschak, Alf, Engelmann, David, Vera, Julio, Wolkenhauer, Olaf, and Pützer, Brigitte M. (2017) Unraveling a tumor type-specific regulatory core underlying E2F1-mediated epithelial-mesenchymal transition to predict receptor protein signatures. Nature Communications, 8. 198.

Knoll, Susanne, Fürst, Katharina, Kowtharapu, Bhavani, Schmitz, Ulf, Marquardt, Stephan, Wolkenhauer, Olaf, Martin, Hubert, and Pützer, Brigitte (2014) E2F1 induces miR-224/452 expression to drive EMT through TXNIP downregulation. EMBO Reports, 15. pp. 1315-1329.

L

Lai, Xin, Schmitz, Ulf, and Vera, Julio (2022) The Role of MicroRNAs in Cancer Biology and Therapy from a Systems Biology Perspective. In: Schmitz, Ulf, Wolkenhauer, Olaf, and Vera, Julio, (eds.) The Role of MicroRNAs in Cancer Biology and Therapy from a Systems Biology Perspective. Advances in Experimental Medicine and Biology, 1385 . Springer, Cham, pp. 1-22.

Li, Xin, Gorle, Anil K., Sundaraneedi, Madhu K., Keene, F. Richard, and Collins, J. Grant (2018) Kinetically-inert polypyridylruthenium(II) complexes as therapeutic agents. Coordination Chemistry Reviews, 375. pp. 134-147.

M

Moral-Sanz, Javier, Fernandez-Rojo, Manuel A., Colmenarejo, Gonzalo, Kurdyukov, Sergey, Brust, Andreas, Ragnarsson, Lotten, Andersson, Asa, Vila, Sabela F., Cabezas-Sainz, Pablo, Wilhelm, Patrick, Vela-Sebastian, Ana, Fernandez-Carrasco, Isabel, Chin, Yanni K.Y., Lopez-Mancheno, Yaiza, Smallwood, Taylor B., Clark, Richard J., Fry, Bryan G., King, Glenn F., Ramm, Grant A., Alewood, Paul F., Lewis, Richard J., Mulvenna, Jason P., Boyle, Glen M., Sanchez, Laura E., Neely, G. Gregory, Miles, John J., and Ikonomopoulou, Maria P. (2022) The structural conformation of the tachykinin domain drives the anti-tumoural activity of an octopus peptide in melanoma BRAF(V600E). British Journal of Pharmacology, 179 (20). pp. 4878-4896.

Mbanefo, Evaristus C., Agbo, Chinwike Terry, Zhao, Yuanlong, Lamanna, Olivia K., Thai, Kim H., Karinshak, Shannon E., Khan, Mohammad Afzal, Fu, Chi-Ling, Odegaard, Justin I., Saltikova, Irina V., Smout, Michael J., Pennington, Luke F., Nicolls, Mark R., Jardetzky, Theodore S., Loukas, Alex, Brindley, Paul J., Falcone, Franco H., and Hsieh, Michael H. (2020) IPSE, an abundant egg-secreted protein of the carcinogenic helminth Schistosoma haematobium, promotes proliferation of bladder cancer cells and angiogenesis. Infectious Agents and Cancer, 15. 63.

Mehrian-Shai, Ruty, Reichardt, Juergen K. V., Harris, Curtis C., and Toren, Amos (2019) The gut-brain axis, paving the way to brain cancer. Trends In Cancer, 5 (4). pp. 200-207.

Marshall, A.D., Bailey, C.G., Champ, K., Vellozzi, M., O'Young, P., Metierre, C., Feng, Y., Thoeng, A., Richards, A.M., Schmitz, U., Biro, M., Jayasinghe, R., Ding, L., Anderson, L., Mardis, E.R., and Rasko, J.E.J. (2017) CTCF genetic alterations in endometrial carcinoma are pro-tumorigenic. Oncogene, 36. pp. 4100-4110.

N

Ng, Monica Suet Ying, Francis, Leo, Pillai, Elango, and Mallett, Andrew John (2018) Paraneoplastic immunoglobulin A nephropathy and associated focal segmental glomerulosclerosis in asymptomatic low volume B-cell lymphoma – a case report. BMC Nephrology, 19 (1). 224.

P

Patchett, Amanda L., Coorens, Tim H.H., Darby, Jocelyn, Wilson, Richard, McKay, Matthew J., Kamath, Karthik S., Rubin, Alan, Wakefield, Matthew, Mcintosh, Lachlan, Mangiola, Stefano, Pye, Ruth J., Flies, Andrew S., Corcoran, Lynn M., Lyons, A. Bruce, Woods, Gregory M., Murchison, Elizabeth P., Papenfuss, Anthony T., and Tovar, Cesar (2020) Two of a kind: transmissible Schwann cell cancers in the endangered Tasmanian devil (Sarcophilus harrisii). Cellular and Molecular Life Sciences, 77 (9). pp. 1847-1858.

R

Raghubar, Arti M., Matigian, Nicholas A., Crawford, Joanna, Francis, Leo, Ellis, Robert, Healy, Helen G., Kassianos, Andrew J., Ng, Monica S.Y., Roberts, Matthew J., Wood, Simon, and Mallett, Andrew J. (2023) High risk clear cell renal cell carcinoma microenvironments contain protumour immunophenotypes lacking specific immune checkpoints. npj Precision Oncology, 7. 88.

Raghubar, Arti M.M., Roberts, Matthew J., Wood, Simon, Healy, Helen G., Kassianos, Andrew J., and Mallett, Andrew J. (2022) Cellular milieu in clear cell renal cell carcinoma. Frontiers in Oncology, 12. 943583.

Ranasinghe, Shiwanthi L., Boyle, Glen M., Fischer, Katja, Potriquet, Jeremy, Mulvenna, Jason P., and McManus, Donald P. (2018) Kunitz type protease inhibitor EgKI-1 from the canine tapeworm Echinococcus granulosus as a promising therapeutic against breast cancer. PLoS ONE, 13 (8). e0200433.

Razaghi, Ali, Villacrés, Carina, Jung, Vincent, Mashkour, Narges, Butler, Michael, Owens, Leigh, and Heimann, Kirsten (2017) Improved therapeutic efficacy of mammalian expressed-recombinant interferon gamma against ovarian cancer cells. Experimental Cell Research, 359 (1). pp. 20-29.

S

Schmitz, Ulf, Wolkenhauer, Olaf, and Vera-González, Julio (2022) Systems Biology of MicroRNAs in Cancer. Advances in Experimental Medicine and Biology, 1385 . Springer Cham.

Shah, Jaynish S., Milevskiy, Michael J.G., Petrova, Veronika, Au, Amy Y.M., Wong, Justin J.L., Visvader, Jane E., Schmitz, Ulf, and Rasko, John E.J. (2022) Towards resolution of the intron retention paradox in breast cancer. Breast Cancer Research, 24. 100.

Sun, Eun Jin, Wankell, Miriam, Palamuthusingam, Pranavan, McFarlane, Craig, and Hebbard, Lionel (2021) Targeting the PI3K/Akt/mTOR pathway in hepatocellular carcinoma. Biomedicines, 9 (11). 1639.

Sternberg, Jade, Wankell, Miriam, Subramaniam, V. Nathan, and Hebbard, Lionel (2017) The functional roles of T-cadherin in mammalian biology. AIMS Molecular Science, 4 (1). pp. 62-81.

Schmitz, Ulf, Wolkenhauer, Olaf, and Vera, Julio (2013) MicroRNA Cancer Regulation: Advanced Concepts, Bioinformatics and Systems Biology Tools. Advances in Experimental Medicine and Biology, 774 . Springer, Dordrecht, Netherlands.

Schultz, Julia, Koczan, Dirk, Schmitz, Ulf, Ibrahim, Saleh M., Pilch, Dominik, Landsberg, Jenny, and Kunz, Manfred (2010) Tumor-promoting role of signal transducer and activator of transcription (Stat)1 in late-stage melanoma growth. Clinical and Experimental Metastasis, 27. pp. 133-140.

T

Thomson, Peter (2020) The “Peter Principle” revisited — Reflections on science, surgery and research. Journal of Oral Pathology and Medicine, 49 (7). pp. 596-600.

V

Vera, Julio, Lai, Xin, Schmitz, Ulf, and Wolkenhauer, Olaf (2012) MicroRNA-Regulated Networks: The Perfect Storm for Classical Molecular Biology, the Ideal Scenario for Systems Biology. In: Schmitz, Ulf, Wolkenhauer, Olaf, and Vera, Julio, (eds.) MicroRNA Cancer Regulation: Advanced Concepts, Bioinformatics and Systems Biology Tools. Springer Nature, Dordrecht, Netherlands, pp. 55-76.

W

Wankell, Miriam, and Hebbard, Lionel (2023) Testing Cell Migration, Invasion, Proliferation, and Apoptosis in Hepatic Stellate Cells. In: Weiskirchen, Ralf, and Friedman, Scott, (eds.) Hepatic Stellate Cells. Methods in Molecular Biology, 2669 . Humana Press, New York, NY, USA, pp. 43-54.

Wight, Joel, Hamad, Nada, Campbell, Belinda A., Ku, Matthew, Lee, Kenneth, Rose, Hannah, Armytage, Tasman, Latimer, Maya, Lee, Hui-Peng, Lee, Sze-Ting, Dickinson, Michael, Khor, Richard, and Verner, Emma (2022) Diffuse large B-cell lymphoma: a consensus practice statement from the Australasian Lymphoma Alliance. Internal Medicine Journal, 52 (9). pp. 1609-1623.

Y

Yakou, Marina H., Ghilas, Sonia, Tran, Kelly, Liao, Yang, Afshar-Sterle, Shoukat, Kumari, Anita, Schmid, Kevin, Dijkstra, Christine, Inguanti, Chantelle, Ostrouska, Simone, Wilcox, Jordan, Smith, Maxine, Parathan, Pavitha, Allam, Amr, Xue, Hai Hui, Belz, Gabrielle T., Mariadason, John M., Behren, Andreas, Drummond, Grant R., Ruscher, Roland, Williams, David S., Pal, Bhupinder, Shi, Wei, Ernst, Matthias, Raghu, Dinesh, and Mielke, Lisa A. (2023) TCF-1 limits intraepithelial lymphocyte antitumor immunity in colorectal carcinoma. Science Immunology, 8 (88). eadf2163.

Z

Zhou, Gang, Da Won Bae, Sarah, Nguyen, Romario, Huo, Xiaoqi, Han, Shuanglin, Zhang, Zhiqiang, Hebbard, Lionel, Duan, Wei, Eslam, Mohammed, Liddle, Christopher, Yuen, Lawrence, Lam, Vincent, Qiao, Liang, and George, Jacob (2021) An aptamer-based drug delivery agent (CD133-apt-Dox) selectively and effectively kills liver cancer stem-like cells. Cancer Letters, 501. pp. 124-132.