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Ban, Natalie C., Cinner, Joshua E., Adams, Vanessa M., Mills, Morena, Almany, Glenn R., Ban, Stephen S., McCook, Laurence J., and White, Alan (2012) Recasting shortfalls of marine protected areas as opportunities through adaptive management. Aquatic Conservation: marine and freshwater ecosystems , 22 (2). pp. 262-271.

Madin, Elizabeth, Ban, Natalie C., Doubleday, Zoë A., Holmes, Thomas H., Pecl, Gretta T., and Smith, Franz (2012) Socio-economic and management implications of range-shifting species in marine systems. Global Environmental Change, 22 (1). pp. 137-146.

Daw, Tim M., Cinner, Joshua E., McClanahan, Timothy R., Brown, Katrina, Stead, Selina M., Graham, Nicholas A.J., and Maina, Jospeh (2012) To fish or not to fish: factors at multiple scales affecting artisanal fishers' readiness to exit a declining fishery. PLoS ONE, 7 (2). e31460. pp. 1-10.

Cinner, J.E., McClanahan, T.R., Graham, N.A.J., Daw, T.M., Maina, J., Stead, S.M., Wamukota, A., Brown, K., and Bodin, Ö. (2012) Vulnerability of coastal communities to key impacts of climate change on coral reef fisheries. Global Environmental Change, 22 (1). pp. 12-20.

Sheppard, C.R.C., Ateweberhan, M., Bowen, B.W., Carr, P., Chen, C.A., Clubbe, C., Craig, M.T., Ebinghaus, R., Eble, J., Fitzsimmons, N., Gaither, M.R., Gan, C-H., Gollock, M., Guzman, N., Graham, N.A.J., Harris, A., Jones, R., Keshavmurthy, S., Koldewey, H., Lundin, C.G., Mortimer, J.A., Obura, D., Pfeiffer, M., Price, A.R.G., Purkis, S., Raines, P., Readman, J.W., Riegl, B., Rogers, A., Schleyer, M., Seaward, M.R.D., Sheppard, A.L.S., Tamelander, J., Turner, J.R., Visram, S., Vogler, C., Vogt, S., Wolschke, H., Yang, J. M-C., Yang, S-Y., and Yesson, C. (2012) Reefs and islands of the Chagos Archipelago, Indian Ocean: why it is the world's largest no-take marine protected area. Aquatic Conservation: marine and freshwater ecosystems , 22 (2). pp. 232-261.

Cinner, J.E., Basurto, Xavier, Fidelman, Pedro, Kuange, John, Lahari, Rachael, and Mukminin, Ahmad (2012) Institutional designs of customary fisheries management arrangements in Indonesia, Papua New Guinea, and Mexico. Marine Policy, 36 (1). pp. 278-285.

Lewis, Stephen E., Schaffelke, Britta, Shaw, Melanie, Bainbridge, Zoë T., Rohde, Ken W., Kennedy, Karen, Davis, Aaron M., Masters, Bronwyn L., Devlin, Michelle J., Mueller, Jochen F., and Brodie, Jon E. (2012) Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef. Marine Pollution Bulletin, 65 (4-9). pp. 280-291.

Jupiter, S.D., Weeks, R., Jenkins, A.P., Egli, D.P., and Cakacaka, A. (2012) Effects of a single intensive harvest event on fish populations inside a customary marine closure. Coral Reefs, 31 (2). pp. 321-334.

Davis, Aaron M., Blanchette, Melanie L., Pusey, Bradley J., Jardine, Tim D., and Pearson, Richard G. (2012) Gut content and stable isotope analyses provide complementary understanding of ontogenetic dietary shifts and trophic relationships among fishes in a tropical river. Freshwater Biology, 57 (10). pp. 2156-2172.

Knip, D.M., Heupel, M.R., and Simpfendorfer, C.A. (2012) Habitat use and spatial segregation of adult spottail sharks Carcharhinus sorrah in tropical nearshore waters. Journal of Fish Biology, 80 (4). pp. 767-784.

Woolsey, Erika, Bainbridge, Scott J., Kingsford, Michael J., and Byrne, Maria (2012) Impacts of cyclone Hamish at One Tree Reef: integrating environmental and benthic habitat data. Marine Biology, 159 (4). pp. 793-803.

Povinec, P.P., Burnett, W.C., Beck, A., Bokuniewicz, H., Charette, M., Gonneea, M.E., Groening, M., Ishitobi, T., Kontar, E., Kwong, L. Liong Wee, Marie, D.E.P., Moore, W.S., Oberdorfer, J.A., Peterson, R., Ramessur, R., Rapaglia, J., Stieglitz, T., and Top, Z. (2012) Isotopic, geophysical and biogeochemical investigation of submarine groundwater discharge: IAEA-UNESCO intercomparison exercise at Mauritius Island. Journal of Environmental Radioactivity, 104. pp. 24-45.

Kennedy, Karen, Schroeder, Thomas, Shaw, Melanie, Haynes, David, Lewis, Stephen, Bentley, Christie, Paxman, Chris, Carter, Steve, Brando, Vittorio E., Bartkow, Michael, Hearn, Laurence, and Mueller, Jochen F. (2012) Long term monitoring of photosystem II herbicides: correlation with remotely sensed freshwater extent to monitor changes in the quality of water entering the Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 292-305.

Blanchette, Melanie L., and Pearson, Richard G. (2012) Macroinvertebrate assemblages in rivers of the Australian dry tropics are highly variable. Freshwater science, 31 (3). pp. 865-881.

Waterhouse, J., Brodie, J., Lewis, S., and Mitchell, A. (2012) Quantifying the sources of pollutants in the Great Barrier Reef catchments and the relative risk to reef ecosystems. Marine Pollution Bulletin, 65 (4-9). pp. 394-406.

Kroon, Frederieke J., Kuhnert, Petra M., Henderson, Brent L., Wilkinson, Scott N., Kinsey-Henderson, Anne, Abbot, Brett, Brodie, Jon E., and Turner, Ryan D.R. (2012) River loads of suspended solids, nitrogen, phosphorus and herbicides delivered to the Great Barrier Reef lagoon. Marine Pollution Bulletin, 65 (4-9). pp. 167-181.

Wilson, Barbara A., Valentine, Leonie E., Reaveley, Alice, Isaac, Joanne, and Wolfe, Kristen M. (2012) Terrestrial mammals of the Gnangara Groundwater System, Western Australia: history, status, and the possible impacts of a drying climate. Australian Mammalogy, 34 (2). pp. 202-216.

Simpfendorfer, Colin A., Olsen, Esben M., Heupel, Michelle, and Moland, Even (2012) Three-dimensional kernel utilization distributions improve estimates of space use in aquatic animals. Canadian Journal of Fisheries and Aquatic Sciences, 69 (3). pp. 565-572.

Young, Jock W., McKinnon, A. David, Ceccarelli, Daniela, Brinkman, Richard, Bustamante, Rodrigo H., Cappo, Mike, Dichmont, Cathy, Doherty, Peter, Furnas, Miles, Gledhill, Daniel, Griffiths, Shane, Hutton, Trevor, Ridgway, Ken, Smith, David, Skewes, Tim, Williams, Alan, and Richardson, Anthony J. (2012) Workshop on the ecosystem and fisheries of the Coral Sea: an Australian perspective on research and management. Reviews in Fish Biology and Fisheries, 22 (3). pp. 827-834.

Lewis, S.E., Brodie, J.E., McCulloch, M.T., Mallella, J., Jupiter, S.D., Williams, H. Stuart, Lough, J.M., and Matson, E.G. (2012) An assessment of an environmental gradient using coral geochemical records, Whitsunday Islands, Great Barrier Reef, Australia. Marine Pollution Bulletin, 65 (4-9). pp. 306-319.

Ainsworth, T.D., Wasmund, K., Ukani, L., Seneca, F., Yellowlees, D., Miller, D., and Leggat, W. (2011) Defining the tipping point. A complex cellular life/death balance in corals in response to stress. Scientific Report, 1. 160. pp. 1-9.

Puga-Bernabéu, Angel, Webster, Jody M., Beaman, Robin J., and Guilbaud, Vincent (2011) Morphology and controls on the evolution of a mixed carbonate-siliciclastic submarine canyon system, Great Barrier Reef margin, north-eastern Australia. Marine Geology, 289 (1-4). pp. 100-116.

Foden, Jo, Devlin, Michelle J., Mills, David K., and Malcolm, Stephen J. (2011) Searching for undesirable disturbance: an application of the OSPAR eutrophication assessment method to marine waters of England and Wales. Biogeochemistry, 106 (2). pp. 157-175.

Leggat, William, Seneca, Francois, Wasmund, Kenneth, Ukani, Lubna, Yellowlees, David, and Ainsworth, Tracy D. (2011) Differential responses of the coral host and their algal symbiont to thermal stress. PLoS ONE, 6 (10). e26687. pp. 1-11.

Foale, Simon, Cohen, Philippa, Januchowski-Hartley, Stephanie, Wenger, Amelia, and Macintyre, Martha (2011) Tenure and taboos: origins and implications for fisheries in the Pacific. Fish and Fisheries, 12 (4). pp. 357-369.

McClanahan, Tim R., Graham, Nicholas A.J., MacNeil, M. Aaron, Muthiga, Nyawira A., Cinner, Joshua E., Bruggemann, J. Henrich, and Wilson, Shaun K. (2011) Critical thresholds and tangible targets for ecosystem-based management of coral reef fisheries. Proceedings of the National Academy of Sciences of the United States of America, 108 (41). pp. 17230-17233.

Abbey, Elizabeth, Webster, Jody M., and Beaman, Robin J. (2011) Geomorphology of submerged reefs on the shelf edge of the Great Barrier Reef: the influence of oscillating Pleistocene sea-levels. Marine Geology, 288 (1-4). pp. 61-78.

Leggat, William, Yellowlees, David, and Medina, Monica (2011) Recent progress in Symbiodinium transcriptomics. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 120-125.

Kool, Johnathan T., Paris, Claire B., Barber, Paul H., and Cowen, Robert K. (2011) Connectivity and the development of population genetic structure in Indo-West Pacific coral reef communities. Global Ecology and Biogeography, 20 (5). pp. 695-706.

Ban, Natalie, Adams, Vanessa, Almany, Glenn, Ban, Stephen, Cinner, Joshua, McCook, Laurence, Mills, Morena, Pressey, Bob, and White, Alan (2011) Designing, implementing and managing marine protected areas: emerging trends and opportunities for coral reef nations. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 21-31.

Ban, Natalie C., Adams, Vanessa, Pressey, Robert L., and Hicks, John (2011) Promise and problems for estimating management costs of marine protected areas. Conservation Letters, 4 (3). pp. 241-252.

Beer, Nicola A., Wing, Stephen R., and Hu, Yi (2011) Physical versus biological control of element incorporation into biogenic carbonate: an in situ experiment in a New Zealand fjord. Marine Ecology Progress Series, 433. pp. 289-301.

Ateweberhan, M., McClanahan, T.R., Graham, N.A.J., and Sheppard, C.R.C. (2011) Episodic heterogeneous decline and recovery of coral cover in the Indian Ocean. Coral Reefs, 30 (3). pp. 739-752.

Hansen, Gretchen J.A., Ban, Natalie C., Jones, Michael L., Kaufman, Les, Panes, Hazel M., Yasué, Maï, and Vincent, Amanda C.J. (2011) Hindsight in marine protected area selection: a comparison of ecological representation arising from opportunistic and systematic approaches. Biological Conservation, 144 (6). pp. 1866-1875.

Ceccarelli, Daniela, Beger, Maria, Kospartov, Marie, Richards, Zoe, and Birrell, Chico (2011) Population trends of remote invertebrate resources in a marine reserve: trochus and holothurians at Ashmore Reef. Pacific Conservation Biology, 17 (2). pp. 132-140.

Simpfendorfer, C.A., Heupel, M.R., White, W.T., and Dulvy, N.K. (2011) The importance of research and public opinion to conservation management of sharks and rays: a synthesis. Marine and Freshwater Research, 62 (6). pp. 518-527.

O'Brien, Dominique, Bartkow, Michael, and Mueller, Jochen F. (2011) Determination of deployment specific chemical uptake rates for SDB-RPD Empore disk using a passive flow monitor (PFM). Chemosphere, 83 (9). pp. 1290-1295.

O'Brien, Dominique, Hawker, Darryl, Shaw, Melanie, and Mueller, Jochen F. (2011) The performance of passive flow monitors and phosphate accumulating passive samplers when exposed to pulses in external water flow rate and/or external phosphate concentrations. Environmental Pollution, 159 (5). pp. 1435-1441.

Kininmonth, Stuart, Beger, Maria, Bode, Michael, Peterson, Eric, Adams, Vanessa M., Dorfman, Dan, Brumbaugh, Daniel R., and Possingham, Hugh P. (2011) Dispersal connectivity and reserve selection for marine conservation. Ecological Modelling, 222 (7). pp. 1272-1282.

Feary, David A., Cinner, Joshua E., Graham, Nicholas A.J., and Januchowski-Hartley, Fraser A. (2011) Effects of customary marine closures on fish behavior, spear-fishing success, and underwater visual surveys. Conservation Biology, 25 (2). pp. 341-349.

Mora, Camilo, Aburto-Oropeza, Octavio, Ayala Bocos, Arturo, Ayotte, Paula M., Banks, Stuart, Bauman, Andrew G., Beger, Maria, Bessudo, Sandra, Booth, David J., Brokovich, Eran, Brooks, Andrew, Chabanet, Pascal, Cinner, Joshua E., Cortés, Jorge, Cruz-Motta, Juan J., Cupul Magaña, Amilcar, DeMartini, Eward E., Edgar, Graham J., Feary, David A., Ferse, Sebastian C.A., Friedlander, Alan M., Gaston, Kevin J., Gough, Charlotte, Graham, Nicholas A.J., Green, Alison, Guzman, Hector, Hardt, Marah, Kulbicki, Michel, Letourneur, Yves, López Pérez, Andres, Loreau, Michel, Loya, Yossi, Martinez, Camilo, Mascareñas-Osorio, Ismael, Morove, Tau, Nadon, Marc-Olivier, Nakamura, Yohei, Paredes, Gustavo, Polunin, Nicholas V.C., Pratchett, Morgan S., Reyes Bonilla, Héctor, Rivera, Fernando, Sala, Enric, Sandin, Stuart A., Soler, German, Stuart-Smith, Rick, Tessier, Emmanuel, Tittensor, Derek P., Tupper, Mark, Usseglio, Paolo, Vigliola, Laurent, Wantiez, Laurent, Williams, Ivor, Wilson, Shaun K., and Zapata, Fernando A. (2011) Global human footprint on the linkage between biodiversity and ecosystem functioning in reef fishes. PLoS Biology, 9 (4). e1000606. pp. 1-9.

Cole, A.J., Lawton, R.J., Pratchett, M.S., and Wilson, S.K. (2011) Chronic coral consumption by butterflyfishes. Coral Reefs, 30 (1). pp. 85-93.

Penin, Lucie, Michonneau, François, Carroll, Andrew, and Adjeroud, Mehdi (2011) Effects of predators and grazers exclusion on early post-settlement coral mortality. Hydrobiologia, 663 (1). pp. 259-264.

Knip, Danielle M., Heupel, Michelle R., Simpfendorfer, Colin A., Tobin, Andrew J., and Moloney, James (2011) Ontogenetic shifts in movement and habitat use of juvenile pigeye sharks Carcharhinus amboinensis in a tropical nearshore region. Marine Ecology Progress Series, 425. pp. 233-246.

Daw, Tim M., Robinson, Jan, and Graham, Nicholas A.J. (2011) Perceptions of trends in Seychelles artisanal trap fisheries: comparing catch monitoring, underwater visual census and fishers' knowledge. Environmental Conservation, 38 (1). pp. 75-88.

Devlin, Michelle (2011) Flooding in NE Australia: how ongoing monitoring of flood plumes helps in managing the Great Barrier Reef. Marine Ecosystems and Management, 4 (4). p. 7.

Stoeckl, Natalie, Hicks, Christina C., Mills, Morena, Fabricius, Katharina, Esparon, Michelle, Kroon, Frederieke, Kaur, Kamaljit, and Costanza, Robert (2011) The economic value of ecosystem services in the Great Barrier Reef: our state of knowledge. Annals of the New York Academy of Sciences, 1219. pp. 113-133.

Cole, A.J., and Pratchett, M.S. (2011) Inter-specific variation in susceptibility to grazing among common reef corals. Marine Ecology Progress Series, 422. pp. 155-164.

Graham, N.A.J., Nash, K.L., and Kool, J.T. (2011) Coral reef recovery dynamics in a changing world. Coral Reefs, 30 (2). pp. 283-294.

Perry, Chris T., and Smithers, Scott G. (2011) Cycles of coral reef 'turn-on', rapid growth and 'turn-off' over the past 8500 years: a context for understanding modern ecological states and trajectories. Global Change Biology, 17 (1). pp. 76-86.

Burt, John A., Feary, David A., Bauman, Andrew G., Usseglio, Paolo, Cavalcante, Georgenes H., and Sale, Peter F. (2011) Biogeographic patterns of reef fish community structure in the northeastern Arabian Peninsula. ICES Journal of Marine Science, 68 (9). pp. 1875-1883.

McClanahan, T.R., and Hicks, C.C. (2011) Changes in life history and ecological characteristics of coral reef fish catch composition with increasing fishery management. Fisheries Management and Ecology, 18 (1). pp. 50-60.

Steneck, R.S., Hughes, T.P., Cinner, J.E., Adger, W.N., Arnold, S.N., Berkes, F., Boudreau, S.A., Brown, K., Folke, C., Gunderson, L., Olsson, P., Scheffer, M., Stephenson, E., Walker, B., Wilson, J., and Worm, B. (2011) Creation of a gilded trap by the high economic value of the Maine lobster fishery. Conservation Biology, 25 (5). pp. 904-912.

Daw, Tim M., Cinner, Joshua E., McClanahan, Timothy R., Graham, Nicholas A.J., and Wilson, Shaun K. (2011) Design factors and socioeconomic variables associated with ecological responses to fishery closures in the Western Indian Ocean. Coastal Management, 39 (4). pp. 412-424.

Tan, C.H., and Heron, S.F (2011) First observed severe mass bleaching in Malaysia, Greater Coral Triangle. Galaxea, Journal of Coral Reef Studies, 13 (1). pp. 27-28.

Graham, Nicholas A.J., Ainsworth, Tracy D., Baird, Andrew H., Ban, Natalie C., Bay, Line K., Cinner, Joshua E., De Freitas, Debora M., Diaz-Pulido, Guillermo, Dornelas, Maria, Dunn, Simon R., Fidelman, Pedro I.J., Foret, Sylvain, Good, Tatjana C., Kool, Johnathan, Mallela, Jennie, Penin, Lucie, Pratchett, Morgan S., and Williamson, David H. (2011) From microbes to people: tractable benefits of no-take areas for coral reefs. Oceanography and Marine Biology, 49. pp. 105-136.

Wallace, Bryan P., DiMatteo, Andrew D., Bolten, Alan B., Chaloupka, Milani Y., Hutchinson, Brian J., Abreu-Grobois, F. Alberto, Mortimer, Jeanne A., Seminoff, Jeffery A., Amorocho, Diego, Bjorndal, Karen A., Bourjea, Jérôme, Bowen, Brian W., Dueñas, Raquel Briseño, Casale, Paolo, Choudhury, B.C., Costa, Alice, Dutton, Peter H., Fallabrino, Alejandro, Finkbeiner, Elena M., Girard, Alexandre, Girondot, Marc, Hamann, Mark, Hurley, Brendan J., López-Mendilaharsu, Milagros, Marcovaldi, Maria Angela, Musick, John A., Nel, Ronel, Pilcher, Nicolas J., Troëng, Sebastian, Witherington, Blair, and Mast, Roderic B. (2011) Global conservation priorities for marine turtles. PLoS ONE, 6 (9). e24510. pp. 1-14.

Hoey, Andrew, Pratchett, Morgan, and Cvitanovic, Christopher (2011) High macroalgal cover and low coral recruitment undermines the potential resilience of the world's southernmost coral reef assemblages. PLoS ONE, 6 (10). e25824.

Bongaerts, P., Bridge, T.C.L., Kline, D.I., Muir, P.R., Wallace, C.C., Beaman, R.J., and Hoegh-Guldberg, O. (2011) Mesophotic coral ecosystems on the walls of Coral Sea atolls. Coral Reefs, 30 (2). p. 335.

O'Brien, Dominique S., Booij, Kees, Hawker, Darryl W., and Mueller, Jochen F. (2011) Method for the in situ calibration of a passive phosphate sampler in estuarine and marine waters. Environmental Science and Technology, 45 (7). pp. 2871-2877.

Cinner, J.E. (2011) Social-ecological traps in reef fisheries. Global Environmental Change, 21 (3). pp. 835-839.

Bene, C, Evans, Louisa, Mills, David, Ovie, S, Raji, A, Tafida, A, Kodio, A, Sinaba, F, Morand, F, Lemoalle, Jacques, and Andrew, N (2011) Testing resilience thinking in a poverty context: experience from the Niger River basin. Global Environmental Change, 21 (4). pp. 1173-1184.

Negri, Andrew P., and Hoogenboom, Mia O. (2011) Water contamination reduces the tolerance of coral larvae to thermal stress. PLoS ONE, 6 (5). pp. 19703-19712.

Cinner, Joshua E., and David, Gilbert (2011) The human dimensions of coastal and marine ecosystems in the Western Indian Ocean. Coastal Management, 39 (4). pp. 351-357.

Werry, J.M., Lee, S.Y., Otway, N.M., Hu, Y., and Sumpton, W. (2011) A multi-faceted approach for quantifying the estuarine–nearshore transition in the life cycle of the bull shark, Carcharhinus leucas. Marine and Freshwater Research, 62 (12). pp. 1421-1431.

Gates, Ruth D., and Ainsworth, Tracy D. (2011) The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 94-101.

Wallace, Bryan P., DiMatteo, Andrew D., Hurley, Brendan J., Finkbeiner, Elena M., Bolten, Alan B., Chaloupka, Milani Y., Hutchinson, Brian J., Abreu-Grobois, F. Alberto, Amorocho, Diego, Bjorndal, Karen A., Bourjea, Jerome, Bowen, Brian W., Briseño Dueñas, Raquel, Casale, Paolo, Choudhury, B.C., Costa, Alice, Dutton, Peter H., Fallabrino, Alejandro, Girard, Alexandre, Girondot, Marc, Godfrey, Matthew H., Hamann, Mark, López-Mendilharsu, Milagros, Marcovaldi, Maria Angela, Mortimer, Jeanne A., Musick, John A., Nel, Ronel, Pilcher, Nicolas J., Seminoff, Jeffrey A., Tröeng, Sebastian, Witherington, Blair, and Mast, Roderic B. (2010) Regional management units for marine turtles: a novel framework for prioritizing conservation and research across multiple scales. PLoS ONE, 5 (12). e15465. pp. 1-11.

Davis, A.M., and Pusey, B.J. (2010) Trophic polymorphism and water clarity in northern Australian Scortum (Pisces: Terapontidae). Ecology of Freshwater Fish, 19 (4). pp. 638-643.

Smajgl, A, Larson, S., Hug, B., and Martins De Freitas, D.M. (2010) Water use benefit index as a tool for community-based monitoring of water related trends in the Great Barrier Reef region. Journal of Hydrology, 395 (1-2). pp. 1-9.

Moore, Ben D., Lawler, Ivan r., Wallis, Ian R., Beale, Colin M., and Foley, William J. (2010) Palatability mapping: a koala’s eye view of spatial variation in habitat quality. Ecology, 91 (11). pp. 3165-3176.

Pollnac, Richard, Christie, Patrick, Cinner, Joshua E., Dalton, Tracey, Daw, Tim M., Forrester, Graham E., Graham, Nicholas A.J., and McClanahan, Timothy R. (2010) Marine reserves as linked social–ecological systems. Proceedings of the National Academy of Sciences, 107 (43). pp. 18262-18265.

Burt, John, Feary, David, Usseglio, Paolo, Bauman, Andrew, and Sale, Peter F. (2010) The influence of wave exposure on coral community development on man-made breakwater reefs, with a comparison to a natural reef. Bulletin of Marine Science, 86 (4). pp. 839-859.

Williams, Stefan B., Pizarro, Oscar, Webster, Jody M. , Beaman, Robin J., Mahon, Ian, Johnson-Roberson, Matthew, and Bridge, Tom C.L. (2010) Autonomous underwater vehicle–assisted surveying of drowned reefs on the shelf edge of the Great Barrier Reef, Australia. Journal of Field Robotics, 27 (5). pp. 675-697.

Ban, Natalie C., Alidina, Hussein M., and Ardron, Jeff A. (2010) Cumulative impact mapping: advances, relevance and limitations to marine management and conservation, using Canada’s Pacific waters as a case study. Marine Policy, 34 (5). pp. 876-886.

Almany, G.R., Hamilton, R.J., Williamson, D.H., Evans, R.D., Jones, G.P., Matawai, M., Potuku, T., Rhodes, K.L., Russ, G.R., and Sawynock, B. (2010) Research partnerships with local communities: two case studies from Papua New Guinea and Australia. Coral Reefs, 29 (3). pp. 567-576.

Cinner, Joshua E., and Bodin, Örjan (2010) Livelihood diversification in tropical coastal communities: a network-based approach to analyzing 'livelihood landscapes'. PLoS ONE, 5 (8). e11999. pp. 1-13.

Carlson, J.K., Ribera, M.M., Conrath, C.L., Heupel, M.R., and Burgess, G.H. (2010) Habitat use and movement patterns of bull sharks Carcharhinus leucas determined using pop-up satellite archival tags. Journal of Fish Biology, 77 (3). pp. 661-675.

Bainbridge, Scott, Steinberg, Craig, and Heron, Mal (2010) Integrating observations: an example from the Great Barrier Reef. Sea Technology, 51 (8). pp. 33-38.

Klein, Carissa J., Ban, Natalie C., Halpern, Benjamin S., Beger, Maria, Game, Edward T., Grantham, Hedley S., Green, Alison, Klein, Travis J., Kininmonth, Stuart, Treml, Eric, Wilson, Kerrie, and Possingham, Hugh P. (2010) Prioritizing land and sea conservation investments to protect coral reefs. PLoS ONE, 5 (8). e12431. pp. 1-8.

Chin, Andrew, Kyne, Peter M., Walker, Terence I., and McAuley, Rory B. (2010) An integrated risk assessment for climate change: analysing the vulnerability of sharks and rays on Australia's Great Barrier Reef. Global Change Biology, 16 (7). pp. 1936-1953.

Penin, Lucie, Michonneau, François, Baird, Andrew H., Connolly, Sean R., Pratchett, Morgan S., Kayal, Mohsen, and Adjeroud, Mehdi (2010) Early post-settlement mortality and the structure of coral assemblages. Marine Ecology Progress Series, 408. pp. 55-64.

Grech, A., and Coles, R.G. (2010) An ecosystem-scale predictive model of coastal seagrass distribution. Aquatic Conservation: marine and freshwater ecosystems , 20 (4). pp. 437-444.

MacNeil, M. Aaron, and Graham, Nicholas A.J. (2010) Enabling regional management in a changing climate through Bayesian meta-analysis of a large-scale disturbance. Global Ecology and Biogeography , 19 (3). pp. 412-421.

Evans, Louisa S. (2010) Ecological knowledge interactions in marine governance in Kenya. Ocean & Coastal Management, 53 (4). pp. 180-191.

Aswani, Shankar, and Sabetian, Armagan (2010) Implications of urbanization for artisanal parrotfish fisheries in the Western Solomon Islands. Conservation Biology, 24 (2). pp. 520-530.

Davis, A.M., Pusey, B.J., Thorburn, D.C ., Dowe, J.L., Morgan, D.L., and Burrows, D. (2010) Riparian contributions to the diet of terapontid grunters (Pisces: Terapontidae) in wet–dry tropical rivers. Journal of Fish Biology, 76 (4). pp. 862-879.

Heffernan, Janet, Barry, Jon, Devlin, Michelle, and Fryer, Rob (2010) A simulation tool for designing nutrient monitoring programmes for eutrophication assessments. Environmetrics, 21 (1). pp. 3-20.

Dhar, Anirban, and Datta, Bithin (2010) Logic-based design of groundwater monitoring network for redundancy reduction. Journal of Water Resources Planning and Management, 136 (1). pp. 88-94.

Myers, Trina S., Atkinson, Ian , and Johnstone, Ron (2010) Supporting coral reef ecosystem research through modelling a re-usable ontology framework. Applied Artificial Intelligence, 24 (1 and 2). pp. 77-101.

Mackay, Stephen J., James, Cassandra S., and Arthington, Angel H. (2010) Macrophytes as indicators of stream condition in the wet tropics region, Northern Queensland, Australia. Ecological Indicators, 10 (2). pp. 330-340.

Rajamani, L, and Marsh, H. (2010) Using parallel regional- and local-scale initiatives to inform conservation management of rare wildlife: a case study of the dugong Dugong dugon in Sabah, Malaysia. Endangered Species Research, 13 (1). pp. 17-23.

Cinner, J.E. (2009) Poverty and the use of destructive fishing gear near east African marine protected areas. Environmental Conservation, 36 (4). pp. 321-326.

Lokrantz, Jerker, Nyström, Marcus, Norström, Albert V., Folke, Carl, and Cinner, Joshua E. (2009) Impacts of artisanal fishing on key functional groups and the potential vulnerability of coral reefs. Environmental Conservation, 36 (4). pp. 327-337.

Dhar, Anirban, and Datta, Bithin (2009) Saltwater intrusion management of coastal aquifers I: linked simulation-optimization. Journal of Hydrologic Engineering, 14 (12). pp. 1263-1272.

Perry, C.T., Smithers, S.G., and Johnson, K.G. (2009) Long-term coral community records from Lugger Shoal on the terrigenous inner-shelf of the central Great Barrier Reef, Australia. Coral Reefs, 28 (4). pp. 941-948.

Datta, Bithin, Vennalakanti, Harikrishna, and Dhar, Anirban (2009) Modeling and control of saltwater intrusion in a coastal aquifer of Andhra Pradesh, India. Journal of Hydro-Environment Research, 3 (3). pp. 148-159.

Ban, Natalie Corinna, and Klein, Carissa Joy (2009) Spatial socioeconomic data as a cost in systematic marine conservation planning. Conservation Letters, 2 (5). pp. 206-215.

Datta, Bithin, Chakrabarty, Dibakar, and Dhar, Anirban (2009) Simultaneous identification of unknown groundwater pollution sources and estimation of aquifer parameters. Journal of Hydrology, 376 (1-2). pp. 48-57.

Adjeroud, M., Michonneau, F, Edmunds, P.J., Chancerelle, Y., Lison de Loma, T., Penin, L., Thibaut, L., Vidal-Dupiol, J., Salvat, B., and Galzin, R. (2009) Recurrent disturbances, recovery trajectories, and resilience of coral assemblages on a South Central Pacific reef. Coral Reefs, 28 (3). pp. 775-780.

Ban, Natalie C., Hansen, Gretchen J.A., Jones, Michael, and Vincent, Amanda C.J. (2009) Systematic marine conservation planning in data-poor regions: Socioeconomic data is essential. Marine Policy, 33 (5). pp. 794-800.

Bhattacharja, Rajib Kumar, and Datta, Bithin (2009) ANN-GA-based model for multiple objective management of coastal aquifers. Journal of Water Resources Planning and Management, 135 (5). pp. 314-322.

Ban, Natalie C., Picard, Chris R., and Vincent, Amanda C.J. (2009) Comparing and integrating community-based and science-based approaches to prioritizing marine areas for protection. Conservation Biology, 23 (4). pp. 899-910.

Lewis, Stephen E., Brodie, Jon E., Bainbridge, Zoe T., Rohde, Ken W., Davis, Aaron M., Masters, Bronwyn L., Maughan, Mirjam, Devlin, Michelle J., Mueller, Jochen F., and Schaffelke, Britta (2009) Herbicides: a new threat to the Great Barrier Reef. Environmental Pollution, 157 (8-9). pp. 2470-2484.

Bainbridge, Zoe T., Brodie, Jon E. , Faithful, John W., Sydes, Damon A., and Lewis, Stephen E. (2009) Identifying the land-based sources of suspended sediments, nutrients and pesticides discharged to the Great Barrier Reef from the Tully–Murray Basin, Queensland, Australia. Marine and Freshwater Research, 60 (11). pp. 1081-1090.

Almany, G.R., Connolly, S.R., Heath, D.D., Hogan, J.D., Jones, G.P., McCook, L.J., Mills, M., Pressey, R.L., and Williamson, D.H. (2009) Connectivity, biodiversity conservation and the design of marine reserve networks for coral reefs. Coral Reefs, 28 (2). pp. 339-351.

Cinner, Joshua, Fuentes, Mariana M.P.B., and Randriamahazo, Herilala (2009) Exploring social resilience in Madagascar’s marine protected areas. Ecology and Society, 14 (1). .

Cinner, Joshua E., McClanahan, Tim R., Graham, Nicholas A.J., Pratchett, Morgan S., Wilson, Shaun K., and Raina, Jean-Baptiste (2009) Gear-based fisheries management as a potential adaptive response to climate change and coral mortality. Journal of Applied Ecology, 46 (3). pp. 724-732.

Ban, Natalie C. (2009) Minimum data requirements for designing a set of marine protected areas, using commonly available abiotic and biotic datasets. Biodiversity and Conservation, 18 (7). pp. 1829-1845.

Kench, P.S., Smithers, S.G., McLean, R.F., and Nichol, S.L. (2009) Holocene reef growth in the Maldives: evidence of a mid-Holocene sea-level highstand in the central Indian Ocean. Geology, 37 (5). pp. 455-458.

Bhattacharjya, Rajib Kumar, Datta, Bithin, and Satish, Mysore G. (2009) Performance of an artificial neural network model for simulating saltwater intrusion process in coastal aquifers when training with noisy data. KSCE Journal of Civil Engineering, 13 (3). pp. 205-215.

Milione, Michael, and Harding, Elaine (2009) Habitat use by platypus (Ornithorhynchus anatinus) in a modified Australian Wet Tropics catchment, north-eastern Queensland. Australian Mammalogy, 31 (1). pp. 35-46.

Ortega, Lori A., Heupel, Michelle, Van Beynen, Philip, and Motta, Philip J. (2009) Movement patterns and water quality preferences of juvenile bull sharks (Carcharhinus leucas) in a Florida estuary. Environmental Biology of Fishes, 84 (4). pp. 361-373.

Collier, Catherine J., Lavery, Paul S., Ralph, Peter J., and Masini, Raymond J. (2009) Shade-induced response and recovery of the seagrass Posidonia sinuosa. Journal of Experimental Marine Biology and Ecology, 370 (1-2). pp. 89-103.

Koch, Evamaria W., Barbier, Edward B., Silliman, Brian R., Reed, Denise J., Perillo, Gerardo M.E., Hacker, Sally D., Granek, Elise F., Primavera, Jurgenne H., Muthiga, Nyawira, Polasky, Stephen, Halpern, Benjamin S., Kennedy, Christopher J., Kappel, Carrie V., and Wolanski, Eric (2009) Non-linearity in ecosystem services: temporal and spatial variability in coastal protection. Frontiers in Ecology and the Environment, 7 (1). pp. 29-37.

Ban, Natalie C., Caldwell, Iain R., Green, Thomas L., Morgan, Siân, O'Donnell, Kerrie, and Selgrath, Jennifer C. (2009) Diverse fisheries require diverse solutions. Science, 323 (5912). p. 338.

Lockie, Stewart, Rockloff, Susan, Helbers, Danielle, Gorospe-Lockie, Maharlina, and Lawrence, Karen (2009) Assessing the social impacts of extensive resource use activities. Journal of Environmental Planning and Management, 52 (4). pp. 437-455.

Ban, Natalie C., and Vincent, Amanda C.J. (2009) Beyond marine reserves: exploring the approach of selecting areas where fishing is permitted, rather than prohibited. PLoS ONE, 4 (7). - .

Wolanski, Eric, Martinez, Jonathan A., and Richmond, Robert H. (2009) Quantifying the impact of watershed urbanization on a coral reef: Maunalua Bay, Hawaii. Estuarine, Coastal and Shelf Science , 84 (2). pp. 259-268.

Devlin, Michelle, and Schaffelke, Britta (2009) Spatial extent of riverine flood plumes and exposure of marine ecosystems in the Tully coastal region, Great Barrier Reef. Marine and Freshwater Research, 60 (11). pp. 1109-1122.

O'Brien, Dominique Sara, Chiswell, Barry, and Mueller, Jochen F. (2009) A novel method for the in situ calibration of flow effects on a phosphate passive sampler. Journal of Environmental Monitoring, 11 (1). pp. 212-219.

Ban, Natalie C, Blight, Louise K, Foster, Sarah J, Morgan, Sian K, and O'Donnell, Kerrie (2008) Pragmatism before prescription for managing global fisheries. Frontiers in Ecology and the Environment, 6 (10). p. 521.

Collins, Angela B., Heupel, Michelle R., and Simpfendorfer, Colin A. (2008) Spatial distribution and long-term movement patterns of cownose rays Rhinoptera bonasus within an estuarine river. Estuaries and Coasts, 31 (6). pp. 1174-1183.

Ainsworth, T.D., Hoegh-Guldberg, O., Heron, S.F., Skirving, W.J., and Leggat, W. (2008) Early cellular changes are indicators of pre-bleaching thermal stress in the coral host. Journal of Experimental Marine Biology and Ecology, 364 (2). pp. 63-71.

Williams, Ashley J., Currey, Leanne M., Begg, Gavin A., Murchie, Cameron D., and Ballagh, Aaron C. (2008) Population biology of coral trout species in eastern Torres Strait: implications for fishery management. Continental Shelf Research, 28 (16). pp. 2129-2142.

McClanahan, Tim R., Hicks, Christina C., and Darling, Emily S. (2008) Malthusian overfishing and efforts to overcome it on Kenyan coral reefs. Ecological Applications, 18 (6). pp. 1516-1529.

Heupel, Michelle R., Reiss, Katie. L., Yeiser, Beau G., and Simpfendorfer, Colin A. (2008) Effects of biofouling on performance of moored data logging acoustic receivers. Limnology and Oceanography: Methods, 6. pp. 327-335.

Yeiser, B.G., Heupel, M.R., and Simpfendorfer, C.A. (2008) Occurrence, home range and movement patterns of juvenile bull (Carcharhinus leucas) and lemon (Negaprion brevirostris) sharks within a Florida estuary. Marine and Freshwater Research, 59 (6). pp. 489-501.

Pohlman, Catherine L., Goosem, Miriam, and Turton, Stephen M. (2008) Effects of severe Tropical Cyclone Larry on rainforest vegetation and understorey microclimate near a road, powerline and stream. Austral Ecology, 33 (4). pp. 503-515.

Middlebrook, Rachael, Hoegh-Guldberg, Ove, and Leggat, William (2008) The effect of thermal history on the susceptibility of reef-building corals to thermal stress. Journal of Experimental Biology, 211 (7). pp. 1050-1056.

Dhar , Anirban, and Datta, Bithin (2008) Optimal operation of reservoirs for downstream water quality control using linked simulation optimization. Hydrological Processes, 22 (6). pp. 842-853.

Simpfendorfer, Colin Ashley, Heupel, Michelle RaNae, and Collins, Angela B. (2008) Variation in the performance of acoustic receivers and its implication for positioning algorithms in a riverine setting. Canadian Journal of Fisheries and Aquatic Sciences, 65 (3). pp. 482-492.

Ban, Natalie C., Picard, Chris, and Vincent, Amanda C.J. (2008) Moving toward spatial solutions in marine conservation with Indigenous communities. Ecology and Society, 13 (1). pp. 1-21.

Dryden, Jennifer, Grech, Alana, Moloney, James, and Hamann, Mark (2008) Re-zoning of the Great Barrier Reef World Heritage Area: does it afford greater protection for marine turtles. Wildlife Research, 35 (5). pp. 477-485.

Stieglitz, Thomas, Taniguchi, Makoto, and Neylon, Skyler (2008) Spatial variability of submarine groundwater discharge, Ubatuba, Brazil. Estuarine, Coastal and Shelf Science , 76 (3). pp. 493-500.

Goosem, Miriam (2007) Fragmentation impacts caused by roads through rainforests. Current Science, 93 (11). pp. 1587-1595.

Dhar, Anirban, and Datta, Bithin (2007) Multiobjective design of dynamic monitoring networks for detection of groundwater pollution. Journal of Water Resources Planning and Management, 133 (4). pp. 329-338.

Chadalavada, Sreenivasulu, and Datta, Bithin (2007) Dynamic optimal monitoring network design for transient transport of pollutants in groundwater aquifers. Water Resources Management, 22 (6). pp. 651-670.

McClanahan, Tim R., Graham, Nicholas A.J., Calnan, Jacqulyn M., and MacNeil, M. Aaron (2007) Towards pristine biomass: reef fish recovery in coral reef marine protected areas in Kenya. Ecological Applications, 17 (4). pp. 1055-1067.

Bhattacharjya, Rajib Kumar, Datta, Bithin, and Satish, Mysore (2007) Artificial neural networks approximation of density dependent saltwater intrusion process in coastal aquifers. Journal of Hydrologic Engineering, 12 (3). pp. 273-282.

Stork, Nigel E. (2007) Australian tropical forest canopy crane: New tools for new frontiers. Austral Ecology, 32 (1). pp. 4-9.

Freiberg, Martin, and Turton, Stephen M. (2007) Importance of drought on the distribution of the birds nest fern, Asplenium nidus, in the canopy of a lowland tropical rainforest in north-eastern Australia. Austral Ecology, 32 (1). pp. 70-76.

Naithani, Jaya, Darchambeau, François, Deleersnijder, Eric, Descy, Jean-Pierre, and Wolanski, Eric (2007) Study of the nutrient and plankton dynamics in Lake Tanganyika using a reduced-gravity model. Ecological Modelling, 200 (1-2). pp. 225-233.

Pohlman, Catherine L., Turton, Stephen M., and Goosem, Miriam (2007) Edge effects of linear canopy openings on tropical rain forest understory microclimate. Biotropica, 39 (1). pp. 62-71.

Ban, Natalie, and Alder, Jackie (2007) How wild is the ocean? Assessing the intensity of anthropogenic marine activities in British Columbia, Canada. Aquatic Conservation: marine and freshwater ecosystems , 18 (1). pp. 55-85.

Dhar, A., and Datta, B. (2006) Chance constrained water quality management model for reservoir systems. ISH Journal of Hydraulic Engineering, 12 (3). pp. 39-48.

Mnaya, Bakari, Mwangomo, Ephraim, and Wolanski, Eric (2006) The influence of wetlands, decaying organic matter, and stirring by wildlife on the dissolved oxygen concentration in eutrophicated water holes in the Seronera River, Serengeti National Park, Tanzania. Wetlands Ecology and Management, 14 (5). pp. 421-425.

Mnaya, Bakari, Wolanski, Eric, and Kiwango, Yustina (2006) Papyrus wetlands a lunar-modulated refuge for aquatic fauna. Wetlands Ecology and Management, 14 (4). pp. 359-363.

Doupe, Robert G., Lymbery, Alan J., and Pettit, Neil E. (2006) Stream salinization is associated with reduced taxonomic, but not functional diversity in a riparian plant community. Austral Ecology, 31 (3). pp. 388-393.

Singh, Raj Mohan, and Datta, Bithin (2006) Identification of groundwater pollution sources using GA-based linked simulation optimization model. Journal of Hydrologic Engineering, 11 (2). pp. 101-109.

Marrinan, Matthew M., Edwards, Will, and Landsberg, Jill (2005) Resprouting of saplings following a tropical rainforest fire in north-east of Queensland, Australia. Austral Ecology, 30 (8). pp. 817-826.

McClanahan, T.R., and Graham, N. A. J. (2005) Recovery trajectories of coral reef fish assemblages within Kenyan marine protected areas. Marine Ecology Progress Series, 294. pp. 241-248.

Turton, Stephen M. (2005) Managing environmental impacts of recreation and tourism in rainforests of the Wet Tropics of Queensland World Heritage Area. Geographical Research, 43 (2). pp. 140-151.

Bhattacharjya, Rajib Kumar, and Datta, Bithin (2005) Optimal management of coastal aquifers using linked simulation optimization approach. Water Resource Management, 19 (3). pp. 295-320.

Brodie, Jon E., and Mitchell, Alan W. (2005) Nutrients in Australian tropical rivers: changes with agricultural development and implications for receiving environments. Marine and Freshwater Research, 56 (3). pp. 279-302.

Heupel, M. R., and Simpfendorfer, C. A. (2005) Quantitative analysis of aggregation behaviour in juvenile blacktip sharks. Marine Biology, 147 (5). pp. 1239-1249.

Singh, Raj Mohan, Datta, Bithin, and Jain, Ashu (2004) Identification of unknown groundwater pollution sources using artificial neural networks. Journal of Water Resources Planning and Management, 130 (6). pp. 506-514.

Singj, Raj Mohan, and Datta, Bithin (2004) Groundwater pollution source identification and simultaneous parameter estimation using pattern matching by artificial neural network. Enviromental Forensics, 5. pp. 143-153.

Boyero, Luz, and Barnard, Peter C. (2004) A Potamophylax larva (Trichoptera: Limnephilidae) using other caddisfly cases to construct its own case. Journal of Natural History, 38 (10). pp. 1297-1301.

Bosch, Jaime, Boyero, Luz, and Martinez-Solano, Inigo (2004) Spatial scales for the management of amphibian populations. Biodiversity and Conservation, 13 (2). pp. 409-420.

Bosch, Jaime, and Boyero, Luz (2004) Reproductive stage and phonotactic preferences of female midwife toads (Alytes cisternasii). Behavioral Ecology and Sociobiology, 55 (3). pp. 251-256.

Boyero, Luz, and Bosch, Jaime (2004) Multiscale spatial variation of stone recolonization by macroinvertebrates in a Costa Rican stream. Journal of Tropical Ecology, 20. pp. 85-95.

Boyero, L. (2003) The effect of substrate texture on colonization by stream macroinvertebrates. International Journal of Limnology, 39 (3). pp. 211-218.

Boyero, Luz (2003) Multiscale patterns of spatial variation in stream macroinvertebrate communities. Ecological Research, 18 (4). pp. 365-379.

Boyero, Luz (2003) The quantification of local substrate heterogeneity in streams and its significance for macroinvertebrate assemblages. Hydrobiologia, 499 (1). pp. 161-168.

Bosch, Jaime, Marquez, Rafael, and Boyero, Luz (2003) Behavioural patterns, preference, and motivation of female midwife toads during phonotaxis tests. Journal of Ethology, 21 (1). pp. 61-66.

Bosch, J., and Boyero, L. (2003) Double stimulation of the inner ear organs of an anuran species (Alytes cisternasii) with simple tonal advertisement calls. Journal of Zoology, 260. pp. 347-351.

Valentine, Peter S., and Johnson, Stephen J. (2003) Notes on the distribution and conservation status of Trapezites atkinsi Williams, Williams & Hay (Lepidoptera:Hesperiidae). Australian Entomologist, 30 (2). pp. 87-91.

Bosch, J., and Boyero, L. (2003) Precopulatory behaviour and the evolutionary relationships of Discoglossidae. Journal of Zoological Systematics and Evolutionary Research, 41 (3). pp. 145-151.

Heupel, M.R., Simpfendorfer, C.A., and Hueter, R.E. (2003) Running before the storm: blacktip sharks respond to falling barometric pressure associated with Tropical Storm Gabrielle. Journal of Fish Biology, 63 (5). pp. 1357-1363.

Grove, Simon J. (2001) Extent and composition of dead wood in Australian lowland tropical rainforest with different management histories. Forest Ecology and Management, 154 (1-2). pp. 35-53.

Hill, Rosemary, Smyth, Dermot, Shipton, Harry, and Fischer, Peter (2001) Cattle, mining or fire? The historical causes of recent contractions of open forest in the wet tropics of Queensland through invasion by rainforest. Pacific Conservation Biology, 7 (3). pp. 185-194.

Goosem, Miriam W (2001) Effects of tropical rainforest roads on small mammals: inhibition of crossing movements. Wildlife Research, 28 (4). pp. 351-364.

Goosem, Miriam W, Izumi, Yoshimi, and Turton, Stephen M (2001) Efforts to restore habitat connectivity for an upland tropical rainforest fauna: A trial of underpasses below roads. Ecological Management and Restoration, 2 (3). pp. 196-202.

Mahar, Pooran S., and Datta, Bithin (2000) Identification of pollution sources in transient groundwater systems. Water Resources Management, 14 (3). pp. 209-227.

Lockie, Stewart, Momtaz, Salim, and Taylor, Bruce (1999) Meaning and the construction of social impacts: water infrastructure development in Australia's Gladstone/Calliope region. Rural Society, 9 (3). pp. 529-542.

Keshari, Ashok K., and Datta, Bithin (1996) Integrated optimal management of ground-water pollution and withdrawal. Ground Water, 34 (1). pp. 104-113.

Book Chapter

Pomeroy, Robert, Cinner, Joshua, and Raakjaer Nielsen, Jesper (2011) Conditions for successful co-management: lessons learned in Asia, Africa, the Pacific and the Wider Caribbean. In: Pomeroy, R S, and Andrew, N L, (eds.) Small-scale fisheries management: frameworks and approaches for the developing world. CABI Publishing, Wallingford, Oxfordshire, UK, pp. 115-131.

Richmond, Robert H., and Wolanski, Eric (2011) Coral research: past efforts and future horizons. In: Dubinsky, Zvy, and Stambler, Noga, (eds.) Coral Reefs: An Ecosystem in Transition. Springer, London, pp. 3-10.

MacGregor, Colin (2011) Innovative river action planning for the Upper Collie Catchment, Western Australia. In: Brebbia, Carlos, (ed.) River Basin Management VI. WIT Transactions on Ecology and the Environment, 146 (146). WIT Press, Southampton, UK, pp. 3-14.

Costanza, R., Bohensky, E., Butler, J.R.A., Bohnet, I., Delisle, A., Fabricius, K., Gooch, M., Kubiszewski, I., Lukacs, G., Pert, P., and Wolanski, E. (2011) A scencario analysis of climate change and ecosystem services for the Great Barrier Reef. In: Wolanski, Eric, McLusky, Donald, van den Belt, M., and Costanza, R., (eds.) Ecological Economics of Estuaries and Coasts. Treatise on Estuarine and Coastal Science, 12 . Academic Press, London, UK, pp. 305-326.

Hicks, Christina C., Hills, Jeremy M., and LeTissier, Martin D.A. (2010) Natural capital: valuing the coast. In: Green, David R., (ed.) Coastal Zone Management. Thomas Telford, London, UK, pp. 92-122.

Wolanski, Eric, Brinson, Mark M., Cahoon, Donald R., and Perillo, Gerardo M.E. (2009) Coastal Wetlands: a synthesis. In: Perillo, Gerardo M.E., Wolanski, Eric, Cahoon, Donald R., and Brinson, Mark M., (eds.) Coastal Wetlands: an integrated ecosystem approach. Elsevier, Amsterdam, The Netherlands, pp. 1-62.

Ferguson, Kathryn (2009) That's not a reef, now that's a reef: a century of (re)placing the Great Barrier Reef. In: Dobrin, S. I., and Morey, S. , (eds.) ECOSEE: image, rhetoric and nature. State University of New York Press, New York, USA, pp. 223-238.

MacGregor, Colin (2009) A waterways management framework for Western Australia. In: Brebbia, Carlos, (ed.) River Basin Management V. WIT Transactions on Ecology and the Environment (124). WIT Press, Southampton, UK, pp. 3-14.

Stork, Nigel E., Goosem, Stephen, and Turton, Steven M. (2008) Australian rainforests in a global context. In: Stork, Nigel E., and Turton, Stephen M., (eds.) Living in a Dynamic Tropical Forest Landscape. Blackwell Publishing, Carlton, VIC, Australia, pp. 4-20.

Hueter, Robert E., and Simpfendorfer, Colin A. (2008) Case study: trends in blue shark abundance in the western north Atlantic as determined by a fishery-independent survey. In: Camhi, Merry D., Pikitch, Ellen K., and Babcock, Elizabeth A., (eds.) Sharks of the Open Ocean: biology, fisheries & conservation. Blackwell Publishing, Oxford, UK, pp. 236-241.

Turton, Stephen M., and Stork, Nigel E. (2008) Environmental impacts of tourism and recreation in the Wet Tropics. In: Stork, Nigel E., and Turton, Stephen M., (eds.) Living in a Dynamic Tropical Forest Landscape. Blackwell Publishing, Carlton, VIC, Australia, pp. 349-356.

Hopley, D. (2008) Geomorphology of coral reefs with special reference to the Great Barrier Reef. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: biology, environment and management. CSIRO Publishing, Collingwood, VIC, Australia, pp. 5-16.

Laurance, William F., and Goosem, Miriam (2008) Impacts of habitat fragmentation and linear clearings on Australian rainforest biota. In: Stork, Nigel E., and Turton, Stephen M., (eds.) Living in a Dynamic Tropical Forest Landscape. Blackwell Publishing, Carlton, VIC, Australia, pp. 295-306.

Turton, Stephen M., and Stork, Nigel E. (2008) Impacts of tropical cyclones on forests in the wet tropics of Australia. In: Stork, Nigel E., and Turton, Stephen M., (eds.) Living in a Dynamic Tropical Forest Landscape. Blackwell Publishing, Carlton, VIC, Australia, pp. 47-58.

Chin, Andrew, and Kyne, Peter M. (2007) Vulnerability of chondrichthyan fishes of the Great Barrier Reef to climate change. In: Johnson, Johanna E., and Marshall, Paul. A, (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority and Australian Greenhouse Office, Townsville, QLD, Australia, pp. 393-425.

Turton, Steve M., and Stork, Nigel E. (2006) Tourism and tropical rainforests: opportunity or threat? In: Laurance, William F., and Peres, Carlos A., (eds.) Emerging Threats to Tropical Forests. Chicago University Press, Chicago, IL, USA, pp. 377-391.

Turton, Stephen M., and Stork, Nigel E. (2006) Towards sustainable tropical forest landscapes in far north Queensland: opportunities and challenges in and beyond the wet tropics. In: Childs, Iraphne R.W., and Hudson, Brian J., (eds.) Queensland: geographical perspectives. Geography Monograph (12). Royal Geographical Society of Queensland, Milton, QLD, Australia, pp. 169-188.

Foley, W.J., Lawler, I.R., Moore, B.D., Marsh, K.J., and Wallis, I.R. (2004) Diet selection in marsupial folivores of Eucalyptus: the role of plant secondary metabolites. In: Goldingay, Ross L., and Jackson, Stephen M., (eds.) The Biology of Australian Possums and Gliders. Surrey Beatty & Sons, Chipping Norton, NSW, Australia, pp. 207-221.

Report

James, Cassandra, Templeman, Shelley, and Burrows, Damien (2017) Townsville field training area ecological monitoring November 2016 - July 2017. External Commissioned Report. James Cook University, Townsville, QLD, Australia.

Devlin, Michelle, and Lewis, Stephen (2011) Advancing Our Understanding of the Source, Transport and Impacts of Pesticides on the Great Barrier Reef and in Associated Ecosystems: a review of MTSRF research outputs, 2006-2010. Report. Reef and Rainforest Research Centre, Cairns, QLD.

Waterhouse, Jane, and Devlin, Michelle (2011) Managing Water Quality on the Great Barrier Reef: an overview of MTSRF research outputs, 2006-2010. Report. Reef and Rainforest Research Centre, Cairns.

Waterhouse, Jane, and Brodie, Jon (2011) Identification of Priority Pollutants and Priority Areas in the Great Barrier Reef catchments. Report. Reef and Rainforest Research Centre, Cairns, QLD.

Macgregor, C., Cook, B., Farrell, C., and Mazella, L. (2011) Framework for Prioritising Waterways for Management in Western Australia. Report. CENRM, The University of Western Australia, Albany, Western Australia.

Johnson, Johanna, Brando, Vittorio, Devlin, Michelle, McKenzie, Len, Morris, Sheridan, Schaffelke, Britta, Thompson, Angus, Waterhouse, Jane, and Waycott, M (2011) Reef Rescue Marine Monitoring Program: 2009/2010 synthesis report. Report. Reef and Rainforest Research Centre, Cairns, QLD.

Grech, Alana, and Marsh, Helene (2010) Community Engagement Tools for Sea Country Planning: Technical Manual. Manual. School of Earth and Environmental Sciences, Townsville, QLD, Australia.

Collier, Catherine, and Waycott, Michelle (2009) Drivers of Change to Seagrass Distributions and Communities on the Great Barrier Reef: literature review and gaps analysis. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Foale, Simon (2009) A Review of Ecosystem Approach to Fisheries within The Nature Conservancy’s Community Engagement Processes in Melanesia. Report. The Nature Conservancy, Online.

Doupè, Robert G., Schaffer, Jason, and Knott, Matthew J. (2008) An Example of Freshwater Turtle Habitat Destruction by Foraging Feral Pigs in Tropical North-Eastern Australia. Report. Australian Centre for Tropical Freshwater Research, Townsville, QLD, Australia.

Little, L. Rich, Begg, Gavin A., Goldman, Barry, Ellis, Nick, Mapstone, Bruce D., Punt, André E., Jones, Annabel, Sutton, Steve, and Williams, Ashley (2008) Modelling Multi-Species Targeting of Fishing Effort in the Queensland Coral Reef Fin Fish Fishery. Report. James Cook University Fishing & Fisheries Research Centre, Townsville, QLD, Australia.

Foale, Simon (2007) Social and economic context of marine resource depletion in Gagil and Maap, Yap State, FSM. Report. Secretariat of the Pacific Regional Environment Programme, Samoa.

Lockie, Stewart, and Jennings, Susan (2003) Central Queensland healthy waterways survey. Report. CRC Coastal Zone Estuary and Waterway Management, Rockhampton, QLD, Australia.

Conference Item

Death, Russell, Canning, Adam, Magierowski, Regina, and Tonkin, Jonathan (2018) Why aren't we managing water quality to protect ecological health? In: [Presented at the 31st Annual FLRC Workshop]. From: 31st Annual FLRC Workshop, 7-9 February 2018, Auckland, New Zealand.

Templeman, Shelley, and James, Cassandra (2015) Challenges to monitoring groundwater contaminants in riparian and terrestrial vegetation. In: Abstracts from the 2015 ASL Conference. p. 126. From: The Changing Freshwater Landscape, 23-26 November 2015, Wellington, NZ.

Stieglitz, Thomas (2014) Groundwater-ocean interaction and its effects on coastal ecological processes: are there groundwater-dependant ecosystems in the coastal zone? In: Abstracts from Goldschmidt 2014. p. 2385. From: Goldschmidt 2014 Conference, 8-13 June 2014 , Sacramento, CA, USA.

Wia, Jane, Januchowski-Hartley, Fraser, Lahari, Rachael U., Morove, Tau, Perks, Helen M., and Holmes, Katherine E. (2012) Coral farming as means of sustaining livelihoods and promoting resource management. In: Proceedings of the 12th International Coral Reef Symposium. 17C_2. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Myers, Trina, Trevathan, Jarrod, and Johnstone, Ron (2012) Supporting dynamic hypothesis modelling and alerts in marine environments. In: Coast to Coast 2012: living on the edge: program and abstract book. p. 81. From: Coast to Coast 2012: Living on the Edge, 17-21 September 2012, Brisbane, QLD, Australia.

Heupel, Michelle R., and Webber, Dale M. (2012) Trends in acoustic tracking: where are the fish going and how will we follow them? In: American Fisheries Society Symposium (76) pp. 219-231. From: American Fisheries Society Symposium 76: advances in fish tagging and marketing technology, 24-28 February 2008, Auckland, NZL.

Sun, Guangzhi, and Heimann, Kirsten (2012) The concept of ecosystem manipulation: what is it, and how does it work in bioremediation? In: Proceedings of the 6th International Conference on Environmental Science and Technology (1) pp. 558-563. From: ICEST2012: 6th International Conference on Environmental Science and Technology, 25-29 June 2012, Houston, TX, USA.

Lewis, S.E., Smith, R., Brodie, J.E., Bainbridge, Z.T., Davis, A.M., and Turner, R. (2011) Using monitoring data to model herbicides exported to the Great Barrier Reef, Australia. In: Proceedings of 19th International Congress on Modelling and Simulation. pp. 2051-2056. From: MODSIM 2011 19th International Congress on Modelling and Simulation, 12–16 December 2011, Perth, WA, Australia.

Adams, Vanessa M., and Pressey, Robert L. (2011) An info‐gap model to examine the robustness of cost‐efficient budget allocations. In: Vulnerability, Uncertainty, and Risk: analysis, modeling, and management. Proceedings of the ICVRAM 2011 and ISUMA 2011 Conferences. pp. 971-979. From: ICVRAM-ISUMA 2011 International Conference on Vulnerability and Risk Analysis and Management and International Symposium on Uncertainty Modeling and Analysis, 11-13 April 2011, Hyattsville, MD, USA.

Myers, Trina, Atkinson, Ian, and Johnstone, Ron (2010) Tools for the rationalisation and management of data collection – the Semantic Reef. In: Coast to Coast 2010: actions for change: program and abstract handbook. p. 31. From: Coast to Coast 2010: actions for change, 20-24 September 2010, Adelaide, SA, Australia.

Myers, Trina, Atkinson, Ian, and Johnstone, Ron (2010) Semantically enabling the SEMAT Project: extending marine sensor networks for decision support and hypothesis testing. In: Proceedings of 2010 International Conference on Complex, Intelligent and Software Intensive Systems. pp. 974-979. From: 3rd IEEE International Workshop on Ontology Alignment and Visualization (OnAV'10), 15-18 February 2010, Krakow, Poland.

Ban, Natalie, Royle, Krista, Short, Charlie, Davis, Neil, Bodtker, Karin, Bryan, Tanya, Cripps, Ken, Day, Andrew, Haggarty, Dana, Lee, Lynn, Manson, Murray, Nicolson, Dave, Rasmussen, Glen, and Ladell, Kate Willis (2010) Identifying priority areas for marine conservation in British Columbia: a collaborative approach. In: Proceedings of the Sixth International Conference of Science and the Management of Protected Areas. pp. 251-262. From: Sixth International Conference of Science and the Management of Protected Areas, 21-26 May 2007, Wolfville, Nova Scotia, Canada.

Huveneers, C., Harcourt, R., Boomer, A., Hobday, A., Pederson, H., Semens, J., Stieglitz, T., Vallee, R., Webber, D., Heupel, M., Simpfendorfer, C., and Peddemors, V. (2009) The influence of environmental parameters (meteorological and oceanographic) on the performance of acoustic receivers. In: Papers from 2nd AATAMS Workshop. From: 2nd AATAMS Workshop, 2-4 November 2009, Mosman, NSW, Australia.

Ban, Natalie (2008) Siting marine reserves: stakeholder-based versus science-driven approaches. In: Proceedings of the Fourth World Fisheries Congress. pp. 1267-1275. From: Fourth World Fisheries Congress, 2-6 May, 2004, Vancouver, British Columbia, Canada.

Myers, Trina S., and Atkinson, Ian M. (2008) The semantic reef: a hypothesis-based, eco-informatics platform to support automated knowledge discovery for remotely monitored reef systems. In: Proceedings of the 11th International Coral Reef Symposium (1) pp. 531-535. From: 11th International Coral Reef Symposium 2008, 07 July - 11 July 2008, Fort Lauderdale, Florida, USA.

Muehlig-Hofmann, Annette, Veitayaki, Joeli, Polunin, Nicholas V.C., Stead, Selina, and Graham, Nicholas (2006) Community-based marine resource management in Fiji – from yesterday to tomorrow. In: Proceedings of the 10th International Coral Reef Symposium 2004 (1) pp. 1259-1266. From: 10th International Coral Reef Symposium 2004, 28 June - 2 July 2004, Okinawa, Japan.

Zeppel, Heather, and Carmody, Julie (2004) Managing environmental tourism in Douglas Shire, North Queensland. In: Proceedings of ASBBS 7th International Conference. pp. 499-511. From: ASBBS 7th International Conference, 6 - 7 August 2004, Cairns, QLD, Australia.

Book

Marsh, Helene, O'Shea, Thomas J., and Reynolds, John E. (2011) Ecology and Conservation of the Sirenia: dugongs and manatees. Conservation Biology, 18 . Cambridge University Press, Cambridge, UK.

Perillo, Gerardo M.E., Wolanski, Eric, Cahoon, Donald R., and Brinson, Mark M. (2009) Coastal Wetlands: an integrated ecosystem approach. Elsevier, Amsterdam, the Netherlands.

Mazda, Yoshihiro, Wolanski, Eric, and Ridd, Peter (2007) The Role of Physical Processes in Mangrove Environments: manual for the preservation and utilization of mangrove ecosystems. Terrapub, Tokyo, Japan.

Thesis

Dubuc, Alexia Ida Anne (2019) Dissolved oxygen as a constraint for the structure of mangrove fish assemblages and their patterns of mangrove utilisation: a comparison between natural and disturbed mangrove ecosystems through the Australian and Caledonian coastlines. PhD thesis, James Cook University.

Connolly, Niall Michael (2016) Bottom-up effects via heterotrophic pathways in invertebrate assemblages of tropical streams: nutrients, leaf litter and the relationship between productivity and diversity. PhD thesis, James Cook University.

Habashiani, Rasoul (2011) Qanat: a sustainable groundwater supply system. Masters (Research) thesis, James Cook University.

Puill-Stephan, Eneour (2010) Chimerism and allorecognition in the broadcast spawning coral Acropora millepora on the Great Barrier Reef. PhD thesis, James Cook University.

Cappo, Mike (2010) Development of a baited video technique and spatial models to explain patterns of fish biodiversity in inter-reef waters. PhD thesis, James Cook University.

Gardiner, Naomi Marcelle (2010) Habitat specialisation, niche overlap and site fidelity in a vulnerable family of coral reef fishes: the cardinalfish (Apogonidae). PhD thesis, James Cook University.

Bonin, Mary Catherine (2010) Patterns of microhabitat specialization and the consequences of coral degradation for coral-associated reef fishes. PhD thesis, James Cook University.

Fuentes, Mariana Menezes Prata Bezerra (2010) Vulnerability of sea turtles to climate change: a case study within the northern Great Barrier Reef green turtle population. PhD thesis, James Cook University.

Hoey, Andrew Scott (2010) The ecosystem role of macroalgal browsing fishes on coral reefs. PhD thesis, James Cook University.

Martins De Freitas, Debora (2010) The role of public participation, spatial information and GIS in natural resource management of the dry tropical coast, northern Australia. PhD thesis, James Cook University.

Myers, Trina Sharlene (2009) Applying semantic technologies and artificial intelligence to eco-informatic modelling of coral reef systems. PhD thesis, James Cook University.

Williamson, David (2009) Fishery effects and benefits of marine protected areas within the Great Barrier Reef Marine Park. PhD thesis, James Cook University.

Richards, Zoe Trisha (2009) Rarity in the coral genus Acropora: implications for biodiversity conservation. PhD thesis, James Cook University.

Cooper, Timothy F. (2008) Coral bioindicators of environmental conditions on coastal coral reefs. PhD thesis, James Cook University.

Dinsdale, Elizabeth (2004) Coral reef health indicators: integrating ecological and perceptual assessments of anchor damage. PhD thesis, James Cook University.

Green, Bridget Siobhan (2004) Parental and environmental effects on the early life history of a tropical reef fish, Amphiprion melanopus. PhD thesis, James Cook University.

Birrell, Chico Liam (2003) Influences of benthic algae on coral settlement and post-settlement survival: implications for the recovery of disturbed and degraded reefs. Masters (Research) thesis, James Cook University.