A

Alvarez Noriega, Mariana, Baird, Andrew H., Bridge, Tom C.L., Dornelas, Maria, Fontoura, Luisa, Pizarro, Oscar, Precoda, Kristin, Torres-Pulliza, Damaris, Woods, Rachael M., Zawada, Kyle, and Madin, Joshua S. (2018) Contrasting patterns of changes in abundance following a bleaching event between juvenile and adult scleractinian corals. Coral Reefs, 37 (2). pp. 527-532.

Anderson, Kristen D., Cantin, Neal E., Heron, Scott F., Lough, Janice M., and Pratchett, Morgan S. (2018) Temporal and taxonomic contrasts in coral growth at Davies Reef, central Great Barrier Reef, Australia. Coral Reefs, 37 (2). pp. 409-421.

Anderson, Kristen D., Cantin, Neal E., Heron, Scott F., Pisapia, Chiara, and Pratchett, Morgan S. (2017) Variation in growth rates of branching corals along Australia's Great Barrier Reef. Scientific Reports, 7. 2920. pp. 1-13.

Alamgir, Mohammed (2016) Ecosystem services across contrasting forested landscapes in Queensland's Wet Tropics Bioregion: contemporary patterns, processes and likely future trends under a changing climate. PhD thesis, James Cook University.

Anderson, Kristen Deanna (2016) Temporal and spatial variation in the growth of branching corals. PhD thesis, James Cook University.

Allan, Bridie Jean Marie (2015) The effects of climate change on predator-prey interactions in coral reef fish. PhD thesis, James Cook University.

Alamgir, Mohammed, Pert, Petina L., and Turton, Stephen M. (2014) A review of ecosystem services research in Australia reveals a gap in integrating climate change and impacts on ecosystem services. The International Journal of Biodiversity Science, Ecosystems Services & Management, 10 (2). pp. 112-127.

Alamgir, Mohammed, Salas, Edison M., Turton, Stephen M., and Pert, Petina L. (2014) Ecosystem services: adaptation pathways and opportunities. In: Moran, Catherine, Turton, Stephen M., and Hill, Rosemary, (eds.) Adaptation Pathways and Opportunities for the Wet Tropics NRM Cluster Region: volume 1: introduction, biodiversity and ecosystem services. James Cook University, Cairns, QLD, Australia, pp. 75-101.

Aristophanous, Marios (2014) Understanding patterns of endemic dung beetle (Coleoptera: Scarabaeidae: Scarabaeinae) biodiversity in the Australian Wet Tropics rainforest: implications of climate change. PhD thesis, James Cook University.

Anderson, Alex S., Reside, April E., VanDerWal, Jeremy J., Shoo, Luke P., Pearson, Richard G., and Williams, Stephen E. (2012) Immigrants and refugees: the importance of dispersal in mediating biotic attrition under climate change. Global Change Biology, 18 (7). pp. 2126-2134.

B

Burrows, Damien, Purandare, Jemma, Bay, Line, Cook, Nathan, Koopman, Danielle, Long, Suzanne, Lundgren, Petra, Mead, David, Morris, Sheriden, Newlands, Maxine, Roth, Christian, Wachenfeld, David, Smith, Adam K., and McLeod, Ian M. (2019) Symposium report: Great Barrier Reef restoration symposium, 2018. Ecological Management and Restoration, 20 (2). pp. 175-178.

Beasley, Robert Gregory (2015) New and emerging issues affecting climate change adaptation on the environment, economic development and settlement patterns of the Mitchell River catchment. Masters (Research) thesis, James Cook University.

Beeden, Roger John (2014) A dynamic understanding of coral reef health informs resilience-based management of the Great Barrier Reef. PhD thesis, James Cook University.

Brooker, R.M., Munday, P.L., Mcleod, I.M., and Jones, G.P. (2013) Habitat preferences of a corallivorous reef fish: predation risk versus food quality. Coral Reefs, 32 (3). pp. 613-622.

Bird, Michael I., Hutley, Lindsay B., Lawes, Michael J., Lloyd, Jon, Luly, Jon G., Ridd, Peter V., Roberts, Richard G., Ulm, Sean, and Wurster, Chris M. (2013) Humans, megafauna and environmental change in tropical Australia. Journal of Quaternary Science, 28 (5). pp. 439-452.

Bradbury, Dominique (2013) Inter- and intra- specific variation in bleaching susceptibility among scleractinian corals. PhD thesis, James Cook University.

Bateman, Brooke L., VanDerWal, Jeremy, Williams, Stephen E., and Johnson, Christopher N. (2012) Biotic interactions influence the projected distribution of a specialist mammal under climate change. Diversity and Distributions, 18 (9). pp. 861-872.

Bohensky, Erin, Butler, James R.A., Costanza, Robert, Bohnet, Iris, Delisle, Aurélie, Fabricius, Katharina, Gooch, Margaret, Kubiszewski, Ida, Lukacs, George, Pert, Petina, and Wolanski, Eric (2011) Future makers or future takers? A scenario analysis of climate change and the Great Barrier Reef. Global Environmental Change, 21 (3). pp. 876-893.

Beger, Maria, Babcock, Russ, Booth, David J., Bucher, Daniel, Condie, Scott A., Creese, Bob, Cvitanovic, Christopher, Dalton , Steve J., Harrison, Peter, Hoey, Andrew, Jordan, Alan, Loder, Jennifer, Malcolm, Hamish, Purcell, Steven W., Roelfsma, Chris, Sachs, Patrick , Smith, Stephen D.A., Sommer, Brigitte, Stuart-Smith, Rick, Thomson, Damian, Wallace, Carden C., Zann, Maria, and Pandolfi, John M. (2011) Research challenges to improve the management and conservation of subtropical reefs to tackle climate change threats. Ecological Management and Restoration, 12 (1). e7-e10.

Bateman, Brooke L., Abell-Davis, Sandra E., and Johnson, Christopher N. (2011) Climate-driven variation in food availability between the core and range edge of the endangered northern bettong (Bettongia tropica). Australian Journal of Zoology, 59 (3). pp. 177-185.

Baldwin, Ken, England, Matthew, Hoegh-Guldberg, Ove, Hughes, Terry, Karoly, David, Lough, Janice, Lynch, Amanda, McCulloch, Malcolm, Nicholls, Neville, Pitman, Andy, Possingham, Hugh, Quiggin, John, and Steffen, Will (2009) Emissions Reduction Targets and the Great Barrier Reef. Report. Federation of Australian Scientific and Technological Societies, Canberra.

C

Crowley, Gabriel M., and Preece, Noel D. (2019) Does extreme flooding drive vegetation and faunal composition across the Gulf Plains of north-eastern Australia? Austral Ecology, 44 (7). pp. 1256-1270.

Collier, Catherine, Langlois, Lucas, Ow, Yan, Johansson, Charlotte, Giammusso, Manuela, Adams, Matthew, O'brien, Katherine, and Uthicke, Sven (2018) Losing a winner: thermal stress and local pressures outweigh the positive effects of ocean acidification for tropical seagrasses. New Phytologist, 219 (3). pp. 1005-1017.

Collier, Catherine J., Xiang, Yan Ow, Langlois, Lucas, Uthicke, Sven, Johansson, Charlotte, Hrebien, Victoria, O'Brien, Kate, and Adams, Matthew P. (2017) Optimum temperatures for net primary productivity of three tropical seagrass species. Frontiers in Plant Science, 8. 1446. pp. 1-32.

Crowley, Gabriel (2016) Climate Change in the Southern Gulf Region: a background paper to inform the Southern Gulf Natural Resource Management Plan. Report. Southern Gulf Natural Resource Management, Mount Isa, QLD, Australia.

Chan, Neil C.S., Wangpraseurt, Daniel, Kuhl, Michael, and Connolly, Sean R. (2016) Flow and coral morphology control coral surface pH: implications for the effects of ocean acidification. Frontiers in Marine Science, 26. pp. 637-641.

Chivers, Douglas P., McCormick, Mark I., Allan, Bridie J.M., and Ferrari, Maud C.O. (2016) Risk assessment and predator learning in a changing world: understanding the impacts of coral reef degradation. Scientific Reports, 6. 32542. pp. 1-7.

Costion, Craig M., Simpson, Lalita, Pert, Petina L., Carlsen, Monica M., Kress, W. John, and Crayn, Darren (2015) Will tropical mountaintop plant species survive climate change? Identifying key knowledge gaps using species distribution modelling in Australia. Biological Conservation, 191. pp. 322-330.

Cernusak, Lucas A., and English, Nathan B. (2015) Beyond tree-ring widths: stable isotopes sharpen the focus on climate responses of temperate forest trees. Tree Physiology, 35 (1). pp. 1-3.

Chan, Neil Ching Siang (2015) Effect of ocean acidification on reef-building corals: understanding variability and projecting population-level impacts. PhD thesis, James Cook University.

Collier, C.J., and Waycott, M. (2014) Temperature extremes reduce seagrass growth and induce mortality. Marine Pollution Bulletin, 83 (2). pp. 483-490.

Chivers, Douglas P., McCormick, Mark I., Nilsson, Göran E., Munday, Philip L., Watson, Sue-Ann, Meekan, Mark, Mitchell, Matthew D., Corkill, Katherine C., and Ferrari, Maud C.O. (2014) Impaired learning about predators and lower survival under elevated CO2: a consequence of neurotransmitter interference. Global Change Biology, 20 (2). pp. 515-522.

Carter, Alex, Taylor, Helen, McKenna, Skye, York, Paul, and Rasheed, Michael (2014) The effect of climate on seagass in the Torres Strait: 2011-2014. Report. TropWATER, Cairns, QLD, Australia.

Chua, Chia-Miin, Leggat, William, Moya, Aurelie, and Baird, Andrew (2013) Temperature affects the early life history stages of corals more than near future ocean acidification. Marine Ecology Progress Series, 475. pp. 85-92.

Coiacetto, Eddo, Shearer, Heather, Taygfeld, Pazit, Dodson, Jago, and Banhalmi-Zakar, Zsuzsa (2013) Developing adaptively: understanding the urban climate adaptation role of the private development sector. In: Proceedings of the 10th International Urban Planning and Environment Association Symposium. pp. 269-283. From: UPE10: 10th International Urban Planning and Environment Association Symposium, 24-27 July 2012, Sydney, NSW, Australia.

Crowley, Gabriel, Dale, Allan, Turton, Steve, and Bennett, Dale (2013) Science to inform climate change planning in North Queensland. Report. Reef and Rainforest Research Centre Limited, Cairns, QLD, Australia.

Chan, Neil C.S., and Connolly, Sean R. (2013) Sensitivity of coral calcification to ocean acidification: a meta-analysis. Global Change Biology, 19 (1). pp. 282-290.

Connolly, S.R., Lopez-Yglesias, M.A., and Anthony, K.R.N. (2012) Food availability promotes rapid recovery from thermal stress in a scleractinian coral. Coral Reefs, 31 (4). pp. 951-960.

Chua, Chia-Miin (2012) The effects of ocean acidification and warming on the early life history stages of corals. PhD thesis, James Cook University.

Chapple, David G., Hoskin, Conrad J., Chapple, Stephanie N.J., and Thompson, Michael B. (2011) Phylogeographic divergence in the widespread delicate skink (Lampropholis delicata) corresponds to dry habitat barriers in eastern Australia. BMC Evolutionary Biology, 11. 191. pp. 1-18.

Collier, Catherine J., Uthicke, Sven, and Waycott, Michelle (2011) Thermal tolerance of two seagrass species at contrasting light levels: Implications for future distribution in the Great Barrier Reef. Limnology and Oceanography, 56 (6). pp. 2200-2210.

Costanza, R., Bohensky, E., Butler, J.R.A., Bohnet, I., Delisle, A., Fabricius, K., Gooch, M., Kubiszewski, I., Lukacs, G., Pert, P., and Wolanski, E. (2011) A scencario analysis of climate change and ecosystem services for the Great Barrier Reef. In: Wolanski, Eric, McLusky, Donald, van den Belt, M., and Costanza, R., (eds.) Ecological Economics of Estuaries and Coasts. Treatise on Estuarine and Coastal Science, 12 . Academic Press, London, UK, pp. 305-326.

Cole, A.J., Pratchett, M.S., and Jones, G.P. (2009) Effects of coral bleaching on the feeding response of two species of coral-feeding fish. Journal of Experimental Marine Biology and Ecology, 373. pp. 11-15.

Collier, Catherine, and Waycott, Michelle (2009) Drivers of Change to Seagrass Distributions and Communities on the Great Barrier Reef: literature review and gaps analysis. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Chin, Andrew, and Kyne, Peter M. (2007) Vulnerability of chondrichthyan fishes of the Great Barrier Reef to climate change. In: Johnson, Johanna E., and Marshall, Paul. A, (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority and Australian Greenhouse Office, Townsville, QLD, Australia, pp. 393-425.

D

Duvert, Clément, Hutley, Lindsay B., Beringer, Jason, Bird, Michael I., Birkel, Christian, Maher, Damien T., Northwood, Matthew, Rudge, Mitchel, Setterfield, Samantha A., and Wynn, Jonathan G. (2020) Net landscape carbon balance of a tropical savanna: relative importance of fire and aquatic export in offsetting terrestrial production. Global Change Biology, 26 (10). pp. 5899-5913.

Dale, Allan P., Vella, Karen J., Ruth, Potts, Babacan, Hurriyet, Cottrell, Alison, Costantini, Winn, Hardacker, Meegan, and Pert, Petina L. (2020) Typical social adaptation measures in climate change planning: a tropical region case study. In: Chaiechi, Taha, (ed.) Economic Effects of Natural Disasters: theoretical foundations, methods, and tools. Elsevier, London, UK, pp. 237-260.

Dougherty, Amy J., Thomas, Zoë A., Fogwill, Christopher, Hogg, Alan, Palmer, Jonathan, Rainsley, Eleanor, Williams, Alan N., Ulm, Sean, Rogers, Kerrylee, Jones, Brian G., and Turney, Chris (2019) Redating the earliest evidence of the mid-Holocene relative sea-level highstand in Australia and implications for global sea-level rise. PLoS ONE, 14 (7). e0218430.

Donelson, Jennifer M., Sunday, Jennifer M., Figueira, Will F., Gaitán-Espitia, Juan Diego, Hobday, Alistair J., Johnson, Craig R., Leis, Jeffrey M., Ling, Scott D., Marshall, Dustin, Pandolfi, John M., Pecl, Gretta, Rodgers, Giverny G., Booth, David J., and Munday, Philip L. (2019) Understanding interactions between plasticity, adaptation and range shifts in response to marine environmental change. Philosophical Transactions of the Royal Society B: Biological Sciences, 374 (1768). 20180186.

Duke, Norman C., and Mackenzie, Jock (2018) ECY Report 2017. Final report: East Cape York shoreline environmental surveys. External Commissioned Report. James Cook University, Townsville, QLD, Australia.

Davey, Peter A., Pernice, Mathieu, Ashworth, Justin, Kuzhiumparambil, Unnikrishnan, Szabó, Milán, Dolferus, Rudy, and Ralph, Peter J. (2018) A new mechanistic understanding of light-limitation in the seagrass Zostera muelleri. Marine Environmental Research, 134. pp. 55-67.

Davies, Kalu J.E. (2017) Carbon cycle processes in tropical savannas of far North Queensland, Australia. PhD thesis, James Cook University.

Duke, Norman (2017) Climate calamity along Australia's gulf coast. Landscape Architecture Australia, 153. pp. 66-71.

Duke, Norman C., Kovacs, John M., Griffiths, Anthony D., Preece, Luke, Hill, Duncan J. E., Van Oosterzee, Penny, Mackenzie, Jock, Morning, Hailey S., and Burrows, Damien (2017) Large-scale dieback of mangroves in Australia’s Gulf of Carpentaria: a severe ecosystem response, coincidental with an unusually extreme weather event. Marine and Freshwater Research, 68 (10). MF16322. pp. 1816-1829.

Duke, Norman (2017) Love at low tide: why mangroves deserve our admiration. Wildlife Australia, 54 (3). pp. 29-33.

Dechnik, Belinda, Webster, Jody M., Webb, Gregory E., Nothdurft, Luke, Dutton, Andrea, Braga, Juan-Carlos, Zhao, Jian-xin, Duce, Stephanie, and Sadler, James (2017) The evolution of the Great Barrier Reef during the Last Interglacial Period. Global and Planetary Change, 149. pp. 53-71.

Dechnik, Belinda, Webster, Jody M., Nothdurft, Luke, Webb, Gregory E., Zhao, Jian-xin, Duce, Stephanie, Braga, Juan C., Harris, Daniel L., Vila-Concejo, Ana, and Puotinen, Marji (2016) Influence of hydrodynamic energy on Holocene reef flat accretion, Great Barrier Reef. Quaternary Research, 85. pp. 44-53.

Donelson, Jennifer M. (2015) Development in a warm future ocean may enhance performance in some species. Journal of Experimental Marine Biology and Ecology, 472. pp. 119-125.

Dawson, John L., and Smithers, Scott G. (2014) Carbonate sediment production, transport, and supply to a coral cay at Raine Reef, northern Great Barrier Reef, Australia: a facies approach. Journal of Sedimentary Research, 84 (11). pp. 1120-1138.

Dawson, John L., Smithers, Scott G., and Hua, Quan (2014) The importance of large benthic foraminifera to reef island sediment budget and dynamics at Raine Island, northern Great Barrier Reef. Geomorphology, 222. pp. 68-81.

Dubey, Sylvain, Pike, David A., and Shine, Richard (2013) Predicting the impacts of climate change on genetic diversity in an endangered lizard species. Climatic Change, 117 (1-2). pp. 319-327.

Dawson, John L., Hua, Quan, and Smithers, Scott G. (2012) Benthic foraminifera: their importance to future reef island resilience. In: Proceedings of the 12th International Coral Reef Symposium. 1A_1. pp. 1-7. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Devney, Carol Ann (2012) Climate variation and population dynamics in tropical seabirds. PhD thesis, James Cook University.

Devney, Carol A., Caley, M. Julian, and Congdon, Bradley C. (2010) Plasticity of noddy parents and offspring to sea-surface temperature anomalies. PLoS ONE, 5 (7). e11891. pp. 1-10.

Devney, Carol, Short, Michael, and Congdon, Bradley C. (2009) Sensitivity of tropical seabirds to El Nino precursors. Ecology, 90 (5). pp. 1175-1183.

E

Epstein, Hannah E., and Kingsford, Michael J. (2019) Are soft coral habitats unfavourable? A closer look at the association between reef fishes and their habitat. Environmental Biology of Fishes, 102. pp. 479-497.

Ensor, J.E., Park, S.E., Attwood, S.J., Kaminski, A.M., and Johnson, J.E. (2018) Can community-based adaptation increase resilience? Climate and Development Journal, 10 (2). pp. 134-151.

Emslie, M.J., Logan, M., Ceccarelli, D.M., Cheal, A.J., Hoey, A.S., Miller, I., and Sweatman, H.P.A. (2012) Regional-scale variation in the distribution and abundance of farming damselfishes on Australia's Great Barrier Reef. Marine Biology, 159 (6). pp. 1293-1304.

F

Forbes, Matt, Jankowski, Nathan, Cohen, Tim, Hopf, Felicitas, Mueller, Daniela, Bird, Michael, Haberle, Simon, and Jacobs, Zenobia (2020) Palaeochannels of Australia's Riverine Plain - reconstructing past vegetation environments across the Late Pleistocene and Holocene. Palaeogeography, Palaeoclimatology, Palaeoecology, 545. 109533.

Figueiredo, Joana, Baird, Andrew, Harii, Saki, and Connolly, Sean R. (2014) Increased local retention of reef coral larvae as a result of ocean warming. Nature Climate Change, 4 (6). pp. 498-502.

Ferrari, Maud C.O., McCormick, Mark I., Munday, Philip L., Meekan, Mark G., Dixson, Danielle L., Lönnstedt, Oona, and Chivers, Douglas P. (2012) Effects of ocean acidification on visual risk assessment in coral reef fishes. Functional Ecology, 26 (3). pp. 553-558.

Ferrari, Maud C.O., Manassa, Rachel P., Dixson, Danielle L., Munday, Philip L., McCormick, Mark I., Meekan, Mark G., Sih, Andrew, and Chivers, Douglas P. (2012) Effects of ocean acidification on learning in coral reef fishes. PLoS ONE, 7 (2). e31478. pp. 1-10.

Feeney, William E., Welbergen, Justin A., and Langmore, Naomi E. (2012) The frontline of avian brood parasite-host coevolution. Animal Behaviour, 84 (1). pp. 3-12.

Fuentes, M.M.P.B, Limpus, C.J., and Hamann, M. (2010) Impacts of climate change on the largest green turtle population in the world: the nGBR green turtle population. Indian Ocean Turtle Newsletter, 12. pp. 6-8.

Fuentes, M.M.P.B., Limpus, C.J., Hamann, M., and Dawson, J. (2010) Potential impacts of projected sea-level rise on sea turtle rookeries. Aquatic Conservation: marine and freshwater ecosystems , 20 (2). pp. 132-139.

Fuentes, Mariana Menezes Prata Bezerra (2010) Vulnerability of sea turtles to climate change: a case study within the northern Great Barrier Reef green turtle population. PhD thesis, James Cook University.

Feary, David A., McCormick, Mark I., and Jones, Geoffrey P. (2009) Growth of reef fishes in response to live coral cover. Journal of Experimental Marine Biology and Ecology, 373 (1). pp. 45-49.

Frisch, Ashley J., and Hobbs, Jean-Paul A. (2009) Rapid assessment of anemone and anemonefish populations at the Keppel Islands [electronic resource]: a report to the Great Barrier Reef Marine Park Authority. Report. Great Barrier Reef Marine Park Authority, Australia.

G

Gely, Claire, Laurance, Susan G.W., and Stork, Nigel E. (2020) How do herbivorous insects respond to drought stress in trees? Biological Reviews, 95. pp. 434-448.

Gray, C.A., Miskiewicz, A.G., Otway, N.M., and Kingsford, M.J. (2019) Historical daytime vertical structure of larval fish assemblages in southeast Australian coastal waters: a benchmark for examining regional ecosystem change. Regional Studies in Marine Science, 29. 100634.

Grech, A., Pressey, R.L., and Day, J.C. (2016) Coal, cumulative impacts, and the Great Barrier Reef. Conservation Letters, 9 (3). pp. 200-207.

Gledhill, Daniel C., Hobday, Alistair J., Welch, David J., Sutton, Stephen G., Lansdell, Matthew J., Koopman, Mathew, Jeloudev, Adrian, Smith, Adam, and Last, Peter (2015) Collaborative approaches to accessing and utilising historical citizen science data: a case-study with spearfishers from eastern Australia. Marine and Freshwater Research, 66 (3). pp. 195-201.

Godfree, Robert, Lepschi, Brendan, Reside, April, Bolger, Terry, Robertson, Bruce, Marshall, David, and Carnegie, Malcolm (2011) Multiscale topoedaphic heterogeneity increases resilience and resistance of a dominant grassland species to extreme drought and climate change. Global Change Biology, 17 (2). pp. 943-958.

Gagliano, Monica, McCormick, Mark I., Moore, James A., and Depczynski, Martial (2010) The basics of acidification: baseline variability of pH on Australian coral reefs. Marine Biology, 157 (8). pp. 1849-1856.

Goldberg, Jeremy, and Wilkinson, Clive (2004) Global threats to coral reefs: coral bleaching, global climate change, disease, predator plagues and invasive species. Status of Coral Reefs of the World, 2004. pp. 67-92.

Guinotte, J.M., Buddemeier, R.W., and Kleypas, J.S. (2003) Future coral reef habitat marginality: temporal and spatial effects of climate change in the Pacific basin. Coral Reefs, 22 (4). pp. 551-558.

H

Hoegh-Guldberg, Ove, Skirving, William J., Lough, Janice M., Liu, Chunying, Mann, Michael E., Donner, Simon, Eakin, C. Mark, Cantin, Neal, Carilli, Jessica, Heron, Scott Fraser, Miller, Sonya, and Dove, Sophie (2019) Commentary: reconstructing four centuries of temperature-induced coral bleaching on the great barrier reef. Frontiers in Marine Science, 6. 86.

Harris, R.M.B., Beaumont, L.J., Vance, T.R., Tozer, C.R., Remenyi, T.A., Perkins-Kirkpatrick, S.E., Mitchell, P.J., Nicotra, A.B., McGregor, S., Andrew, N.R., Letnic, M., Kearney, M.R., Wernberg, T., Hutley, L.B., Chambers, L.E., Fletcher, M.-S., Keatley, M.R., Woodward, Clifford, Williamson, G., Duke, N.C., and Bowman, D.M.J.S. (2018) Biological responses to the press and pulse of climate trends and extreme events. Nature Climate Change, 8. pp. 579-587.

Harris, Todd, Hope, Pandora, Oliver, Eric, Smalley, Robert, Arblaster, Julie, Holbrook, Neil, Duke, Norman, Pearce, Karen, Braganza, Karl, and Bindoff, Nathaniel (2017) Climate drivers of the 2015 Gulf of Carpentaria mangrove dieback. Report. Bureau of Meteorology, Canberra, ACT, Australia.

Hughes, Terry P., Kerry, James T., Álvarez-Noriega, Mariana, Alvarez-Romero, Jorge G., Anderson, Kristen D., Baird, Andrew, Babcock, Russell C., Beger, Maria, Bellwood, David, Berkelmans, Ray, Bridge, Tom C., Butler, Ian R., Byrne, Maria, Cantin, Neal E., Comeau, Steeve, Connolly, Sean, Cumming, Graeme S., Dalton, Steven J., Diaz-Pulido, Guillermo, Eakin, C. Mark, Figueira, Will F., Gilmour, James P., Harrison, Hugo B., Heron, Scott F., Hoey, Andrew S., Hobbs, Jean-Paul A., Hoogenboom, Mia O., Kennedy, Emma V., Kuo, Chao-Yang, Lough, Janice M., Lowe, Ryan J., Liu, Gang, McCulloch, Malcolm T., Malcolm, Hamish A., McWilliam, Michael J., Pandolfi, John M., Pears, Rachel J., Pratchett, Morgan S., Schoepf, Verena, Simpson, Tristan, Skirving, William J., Sommer, Brigitte, Torda, Gergely, Wachenfeld, David R., Willis, Bette L., and Wilson, Shaun (2017) Global warming and recurrent mass bleaching of corals. Nature, 543 (7645). pp. 373-377.

Hallgren, Willow, Beaumont, Linda, Bowness, Andrew, Chambers, Lynda, Graham, Erin, Holewa, Hamish, Laffan, Shawn, Mackey, Brendan, Nix, Henry, Price, Jeff, Vanderwal, Jeremy, Warren, Rachel, and Weis, Gerhard (2016) The biodiversity and climate change virtual laboratory: where ecology meets big data. Environmental Modelling & Software, 76. pp. 182-186.

Humanes, Adriana, Noonan, Sam H.C., Willis, Bette L., Fabricius, Katharina E., and Negri, Andrew P. (2016) Cumulative effects of nutrient enrichment and elevated temperature compromise the early life history stages of the Coral Acropora tenuis. PLoS ONE, 11. e0161616. pp. 1-23.

Heron, Scott F., Maynard, Jeffrey A., Van Hooidonk, Ruben, and Eakin, C. Mark (2016) Warming trends and bleaching stress of the world's coral reefs 1985-2012. Scientific Reports, 6. 38402. pp. 1-14.

Hill, James (2016) The effects of changing climates on seed production and seed viability on tropical plant species. PhD thesis, James Cook University.

Haig, Jordahna Ellan-Ann (2015) Investigating long-term, high-resolution records of climate and extreme events in the southeast Indian and southwest Pacific oceans using the δ¹⁸O of stalagmites. PhD thesis, James Cook University.

Haig, Jordahna, Nott, Jonathan, and Reichart, Gert-Jan (2014) Australian tropical cyclone activity lower than at any time over the past 550-1,500 years. Nature, 505 (7485). pp. 667-672.

Holbrook, Neil J., and Johnson, Johanna E. (2014) Climate change impacts and adaptation of commercial marine fisheries in Australia: a review of the science. Climatic Change, 124 (4). pp. 703-715.

Hilbert, David W., Hill, Rosemary, Moran, Catherine, Turton, Stephen M., Bohnet, Iris C., Marshall, Nadine A., Pert, Petina L., Stoeckl, Natalie, Murphy, Helen T., Reside, April E., Laurance, Susan G.W., Alamgir, Mohammed, Coles, Rob, Crowley, Gabriel, Curnock, Matt, Dale, Allan, Duke, Norman C., Esparon, Michelle, Farr, Marina, Gillet, Sarah, Gooch, Margaret, Fuentes, Mariana, Hamann, Mark, James, Cassandra S., Kroon, Frederieke J., Larson, Silva, Lyons, Pethie, Marsh, Helene, Meyer Steiger, Dagmar, Sheaves, Marcus, and Westcott, David (2014) Climate change issues and impacts in the Wet Tropics NRM cluster region. Report. James Cook University, Cairns, QLD, Australia.

Harrison, Hugo B., Saenz-Agudelo, Pablo, Planes, Serge, Jones, Geoffrey P., and Berumen, Michael L. (2013) On minimizing assignment errors and the trade-off between false positives and negatives in parentage analysis. Molecular Ecology, 22 (23). pp. 5738-5742.

Hoffmann, Bernd, Kahmen, Ansgar, Cernusak, Lucas A., Arndt, Stefan K., and Sachse, Dirk (2013) Abundance and distribution of leaf wax n-alkanes in leaves of Acacia and Eucalyptus trees along a strong humidity gradient in northern Australia. Organic Geochemistry, 62. pp. 62-67.

Harrison, Hugo B., Saenz-Agudelo, Pablo, Planes, Serge, Jones, Geoffrey P., and Berumen, Michael L. (2013) Relative accuracy of three common methods of parentage analysis in natural populations. Molecular Ecology, 22 (4). pp. 1158-1170.

Hobbs, J-P. A., Jones, G.P., and Munday, P.L. (2011) Extinction risk in endemic marine fishes. Conservation Biology, 25 (5). pp. 1053-1055.

Hughes, Terry (2009) World at a tipping point. Australian R&D Review. p. 9.

I

Inkster-Draper, Tamara E. (2017) Biogeography of bats in the Australian Wet Tropics: current distribution and response to future climate change. PhD thesis, James Cook University.

Isaac, Joanne L., VanDerWal, Jeremy, Johnson, Christopher N., and Williams, Stephen (2009) Resistance and resilience: quantifying relative extinction risk in a diverse assemblage of Australian tropical rainforest vertebrates. Diversity and Distributions, 15 (2). pp. 280-288.

Isaac, Joanne L., and Williams, Stephen E. (2007) Climate change and extinctions. In: Levin, Simon A., (ed.) Encyclopedia of Biodiversity. Elsevier, - .

J

Jaffrés, Jasmine B.D., Cuff, Chris, Rasmussen, Cecily, and Hesson, Aimee S. (2018) Teleconnection of atmospheric and oceanic climate anomalies with Australian weather patterns: a review of data availability. Earth-Science Reviews, 176. pp. 117-146.

Jarrold, Michael D., Humphrey, Craig, McCormick, Mark I., and Munday, Philip L. (2017) Diel CO2 cycles reduce severity of bahavioural abnormalities in coral reef fish under ocean acidification. Scientific Reports, 7.

James, Cassandra S., Reid, Michael A., and Capon, Samatha J. (2016) Climate change and the future of Australian riverine vegetation. In: Capon, Samatha J., James, Cassandra S., and Reid, Michael, (eds.) Vegetation of Australian Riverine Landscapes: biology, ecology and management. CSIRO publishing, Melbourne, VIC, Australia, pp. 387-407.

Johnson, Johanna E., and Welch, David J. (2016) Climate change implications for Torres Strait fisheries: assessing vulnerability to inform adaptation. Climatic Change, 135 (3). pp. 611-624.

Johansen, J.L., Messmer, V., Coker, D.J., Hoey, A.S., and Pratchett, M.S. (2014) Increasing ocean temperatures reduce activity patterns of a large commercially important coral reef fish. Global Change Biology, 20 (4). pp. 1067-1074.

Johnson, Johanna, and Holbrook, Neil (2014) Adaptation of Australia's marine ecosystems to climate change: using science to inform conservation management. International Journal of Ecology, 2014. 140354.

Jarvis, Diane, Stoeckl, Natalie, and Chaiechi, Taha (2013) Applying econometric techniques to hydrological problems in a large basin: quantifying the rainfall–discharge relationship in the Burdekin, Queensland, Australia. Journal of Hydrology, 496. pp. 107-121.

Johansen, J.L., and Jones, G.P. (2011) Increasing ocean temperature reduces the metabolic performance and swimming ability of coral reef damselfishes. Global Change Biology, 17 (9). pp. 2971-2979.

K

Kingsford, Michael J., Welch, David, and O'Callaghan, Mark (2019) Latitudinal and cross-shelf patterns of size, age, growth, and mortality of a tropical damselfish Acanthochromis polyacanthus on the Great Barrier Reef. Diversity, 11 (5). 67.

Kim, Sun W., Sampayo, Eugenia M., Sommer, Brigitte, Sims, Carrie A., Gómez‐Cabrera, Maria del C., Dalton, Steve J., Beger, Maria, Malcolm, Hamish A., Ferrari, Renata, Fraser, Nicola, Figueira, Will F., Smith, Stephen D.A., Heron, Scott F., Baird, Andrew H., Byrne, Maria, Eakin, C. Mark, Edgar, Robert, Hughes, Terry P., Kyriacou, Nicole, Liu, Gang, Matis, Paloma A., Skirving, William J., and Pandolfi, John M. (2019) Refugia under threat: mass bleaching of coral assemblages in high-latitude eastern Australia. Global Change Biology, 25 (11). pp. 3918-3931.

Kearney, Michael R., Munns, Suzanne L., Moore, Danae, Malishev, Matthew, and Bull, C. Michael (2018) Field tests of a general ectotherm niche model show how water can limit lizard activity and distribution. Ecological Monographs, 88 (4). pp. 672-693.

Keppel, Gunnar, Mokany, Karel, Wardell-Johnson, Grant W., Phillips, Ben L., Welbergen, Justin A., and Reside, April E. (2015) The capacity of refugia for conservation planning under climate change. Frontiers in Ecology and the Environment, 13 (2). pp. 106-112.

Koehn, John D., Hobday, Alistair J., Pratchett, Morgan S., and Gillanders, Bronwyn M. (2011) Climate change and Australian marine and freshwater environments, fishes and fisheries: synthesis and options for adaptation. Marine and Freshwater Research, 62 (9). pp. 1148-1164.

Kvennefors, E. Charlotte E., Leggat, William, Kerr, Caroline C., Ainsworth, Tracy D., Hoegh-Guldberg, Ove, and Barnes, Andrew C. (2010) Analysis of evolutionarily conserved innate immune components in coral links immunity and symbiosis. Developmental and Comparative Immunology, 34 (11). pp. 1219-1229.

Kearney, Michael, Porter, Warren P., Williams, Craig, Ritchie, Scott, and Hoffmann, Ary A. (2009) Integrating biophysical models and evolutionary theory to predict climatic impacts on species' ranges: the dengue mosquito Aedes aegypti in Australia. Functional Ecology, 23 (3). pp. 528-538.

L

Lienart, Govinda D.H., Ferrari, Maud C.O., and McCormick, Mark I. (2016) Thermal environment and nutritional condition affect the efficacy of chemical alarm cues produced by prey fish. Environmental Biology of Fishes, 99 (10). pp. 729-739.

Lienart, Govinda-Das Hugo (2016) Effects of temperature and food availability on the antipredator behaviour of juvenile coral reef fishes. PhD thesis, James Cook University.

Lutz, Adrian, Raina, Jean-Baptiste, Motti, Cherie A., Miller, David J., and van Oppen, Madeleine J.H. (2015) Host coenzyme Q redox state is an early biomarker of thermal stress in the coral Acropora millepora. PLoS ONE, 10 (10). e0139290. pp. 1-18.

Little, Jeremy Keenan (2015) A song of fire and water: will climate change interacting with fire affect the distribution of vegetation in the Australian Wet Tropics? PhD thesis, James Cook University.

Lindenmayer, David, Burns, Emma, Thurgate, Nicole, Lowe, Andrew, Dickman, Chris, Dormontt, Eleanor, Ens, Emilie, Foulkes, Jeff, Hoffmann, Ary, Keith, David, Liddell, Michael, Metcalfe, Daniel, Russell-Smith, Jeremy, Sparrow, Ben, Wardle, Glenda, White, Andrew, Williams, Richard, and Wood, Sam (2014) Synopsis. In: Lindenmayer, David, Burns, Emma, Thurgate, Nicole, and Lowe, Andrew, (eds.) Biodiversity and Environmental Change: monitoring, challenges and direction. CSIRO Publishing, Collingwood, VIC, Australia, pp. 573-595.

Lönnstedt, Oona M., Munday, Philip L., McCormick, Mark I., Ferrari, Maud C.O., and Chivers, Douglas P. (2013) Ocean acidification and responses to predators: can sensory redundancy reduce the apparent impacts of elevated CO2 on fish? Ecology and Evolution, 3 (10). pp. 3565-3575.

Leduc, Antoine O.H.C., Munday, Philip L., Brown, Grant E., and Ferrari, Maud C.O, (2013) Effects of acidification on olfactory-mediated behaviour in freshwater and marine ecosystems: a synthesis. Philosophical Transactions of the Royal Society B: Biological Sciences, 368 (1627). 20120447 . pp. 1-14.

Li, Siqiwen (2013) Natural disaster-induced Australian equity market reaction: discrimination across industries. Journal of Law & Financial Management, 12 (1). pp. 18-28.

Lunt, Ian D., Byrne, Margaret, Hellmann, Jessica J., Mitchell, Nicola J., Garnett, Stephen T., Hayward, Matt W., Martin, Tara G., McDonald-Madden, Eve, Williams, Stephen E., and Zander, Kerstin K. (2013) Using assisted colonisation to conserve biodiversity and restore ecosystem function under climate change. Biological Conservation, 157. pp. 172-177.

Lönnstedt, Oona I., McCormick, Mark I., and Chivers, Douglas P. (2013) Degraded environments alter prey risk assessment. Ecology and Evolution, 3 (1). pp. 38-47.

Li, Siqiwen, and Chaiechi, Taha (2013) Mapping water availability and volatility with climate events: using finance indexing methodology. Journal of Finance and Investment Analysis, 2 (4). pp. 13-28.

Lönnstedt, Oona Margareta (2013) Predator-prey interactions and the importance of sensory cues in a changing world. PhD thesis, James Cook university.

Lönnstedt, Oona M., and McCormick, Mark I. (2013) Ultimate predators: lionfish have evolved to circumvent prey risk assessment abilities. PLoS ONE, 8 (10). e75781. pp. 1-8.

Li, Siqiwen (2012) The Australian capital market reaction to natural catastrophes: an empirical analysis using event study method. In: Proceedings of Global Accounting, Finance and Economics Conference. 329. pp. 1-19. From: Global Accounting, Finance and Economics Conference, 20-21 February 2012, Melbourne, VIC, Australia.

Linares, C., Pratchett, M.S., and Coker, D.J. (2011) Recolonisation of Acropora hyacinthus following climate-induced coral bleaching on the Great Barrier Reef. Marine Ecology Progress Series, 438. pp. 97-104.

Leblanc, Marc J., Tregoning, Paul, Ramillien, Guillaume, Tweed, Sarah O., and Fakes, Adam (2009) Basin-scale, integrated observations of the early 21st century multiyear drought in southeast Australia. Water Resources Research, 45. W04408.

M

McKenzie, Madeline R., Templeman, Michelle A., and Kingsford, Michael J. (2020) Detecting effects of herbicide runoff: the use of Cassiopea maremetens as a biomonitor to hexazinone. Aquatic Toxicology, 221. 105442.

Marshall, Nadine, Thiault, L., Beeden, A., Beeden, R., Benham, Claudia, Curnock, Matt I., Diedrich, Amy, Gurney, Georgina G., Jones, L., Marshall, Paul, Nakamura, N., and Pert, Petina (2019) Our environmental value orientations influence how we respond to climate change. Frontiers in Psychology, 10. 938.

Madin, Joshua S., Baird, Andrew H., Bridge, Tom C.L., Connolly, Sean R., Zawada, Kyle J.A., and Dornelas, Maria (2018) Cumulative effects of cyclones and bleaching on coral cover and species richness at Lizard Island. Marine Ecology Progress Series, 604. pp. 263-268.

McMahon, Shannon J., Donelson, Jennifer M., and Munday, Philip L. (2018) Food ration does not influence the effect of elevated CO2 on antipredator behaviour of a reef fish. Marine Ecology Progress Series, 586. pp. 155-165.

Merino-Viteri, Andrés Ricardo (2018) The vulnerability of microhylid frogs, Cophixalus spp., to climate change in the Australian Wet Tropics. PhD thesis, James Cook University.

McCormick, Mark I., Chivers, Douglas P., Allan, Bridie J.M., and Ferrari, Maud C.O. (2017) Habitat degradation disrupts neophobia in juvenile coral reef fish. Global Change Biology, 23. pp. 719-727.

McCormick, Mark I., and Allan, Bridie J.M. (2017) Interspecific differences in how habitat degradation affects escape response. Scientific Reports, 7.

McCormick, Mark I., and Lönnstedt, Oona M. (2016) Disrupted learning: habitat degradation impairs crucial antipredator responses in naive prey. Proceedings of the Royal Society of London Series B, Biological Sciences, 283. 20160441. pp. 1-8.

Mellin, C., Lurgi, M., Matthews, S., MacNeil, M.A., Caley, M.J., Bax, N., Przeslawski, R., and Fordham, D.A. (2016) Forecasting marine invasions under climate change: biotic interactions and demographic processes matter. Biological Conservation, 204 (Part B). pp. 459-467.

Munday, Philip L., Donelson, Jennifer M., and Domingos, Jose A. (2016) Potential for adaptation to climate change in a coral reef fish. Global Change Biology, 23 (1). pp. 307-317.

Mackenzie, Jock R., Duke, Norman C., and Wood, Apanie L. (2016) The Shoreline Video Assessment Method (S-VAM): using dynamic hyperlapse image acquisition to evaluate shoreline mangrove forest structure, values, degradation and threats. Marine Pollution Bulletin, 109 (2). pp. 751-763.

Moya, A., Huisman, L., Fêret, S., Gattuso, J-P., Hayward, D.C., Ball, E.E., and Miller, D.J. (2015) Rapid acclimation of juvenile corals to CO2-mediated acidification by upregulation of heat shock protein and Bcl-2 genes. Molecular Ecology, 24 (2). pp. 438-452.

McKenna, Skye, Jarvis, Jessie, Sankey, Tonia, Reason, Carissa, Coles, Robert, and Rasheed, Michael (2015) Declines of seagrasses in a tropical harbour, North Queensland, Australia, are not the result of a single event. Journal of Biosciences, 40 (2). pp. 389-398.

Moran, Catherine, Turton, Stephen M., and Hill, Rosemary (2014) Adaptation Pathways and Opportunities for the Wet Tropics NRM Cluster Region: volume 1: introduction, biodiversity and ecosystem services. James Cook University, Cairns, QLD, Australia.

Messmer, Vanessa, Blowes, Shane A., Jones, Geoffrey P., and Munday, Philip L. (2014) Experimental evaluation of diversity-productivity relationships in a coral reef fish assemblage. Oecologia, 176 (1). pp. 237-249.

McCormick, Mark I., and Lönnstedt, Oona M. (2013) Degrading habitats and the effect of topographic complexity on risk assessment. Ecology and Evolution, 3 (12). pp. 4221-4229.

Monadjem, Ara, Virani, Munir Z., Jackson, Colin, and Reside, April (2013) Rapid decline and shift in the future distribution predicted for the endangered Sokoke Scops Owl Otus ireneae due to climate change. Bird Conservation International, 23 (2). pp. 247-258.

McLeod, Ian M., Rummer, Jodie L., Clark, Timothy D., Jones, Geoffrey P., McCormick, Mark I., Wenger, Amelia S., and Munday, Philip L. (2013) Climate change and the performance of larval coral reef fishes: the interaction between temperature and food availability. Conservation Physiology, 1 (1). pp. 1-12.

McCormick, Mark I., Watson, Sue-Ann, and Munday, Philip L. (2013) Ocean acidification reverses competition for space as habitats degrade. Scientific Reports, 3. 3280. pp. 1-6.

Munday, Philip L., McCormick, Mark I., Meekan, Mark, Dixson, Danielle L., Watson, Sue-Ann, Chivers, Douglas P., and Ferrari, Maud C.O. (2012) Selective mortality associated with variation in CO2 tolerance in a marine fish. Ocean Acidification, 1 (1). pp. 1-5.

McCormick, Mark I. (2012) Lethal effects of habitat degradation on fishes through changing competitive advantage. Proceedings of the Royal Society of London Series B, Biological Sciences, 279 (1744). pp. 3899-3904.

Moya, A., Huisman, L., Ball, E.E., Hayward, D.C., Grasso, L.C., Chua, C.M., Woo, H.N., Gattuso, J.-P, Forêt, S., and Miller, D.J. (2012) Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2-driven acidification during the initiation of calcification. Molecular Ecology, 21 (10). pp. 2440-2454.

Madin, Joshua S., Hughes, Terry P., and Connolly, Sean R. (2012) Calcification, storm damage and population resilience of tabular corals under climate change. PLoS ONE, 7 (10). e46637. pp. 1-10.

Munday, Philip L., McCormick, Mark I., and Nilsson, Göran E. (2012) Impact of global warming and rising CO₂ levels on coral reef fishes: what hope for the future? The Journal of Experimental Biology, 215. pp. 3865-3873.

McKenzie, Len, Collier, Catherine, Waycott, Michelle, Unsworth, Richard, Yoshida, Rudi, and Smith, Naomi (2012) Monitoring inshore seagrasses of the GBR and responses to water quality. In: Proceedings of the 12th International Coral Reef Symposium. 15B_4. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Munday, Philip L., Cheal, Alistair J., Graham, Nicholas A.J., Meekan, Mark, Pratchett, Morgan S., Sheaves, Marcus, Sweatman, Hugh, and Wilson, Shaun K. (2012) Tropical coastal fish. In: Ploczanska, E.S., Hobday, A.J., and Richardson, A.J., (eds.) A Marine Climate Change Impacts and Adaptation Report Card for Australia. CSIRO Marine and Atmospheric Research, Brisbane, QLD, Australia, pp. 281-306.

Mokany, Karel, Richardson, Anthony J., Poloczanska, Elvira S., Ferrier, Simon, Elith, Jane, Robinson, Lucy M., Reside, April, Harwood, Tom D., Dunstan, Piers K., Williams, Kristen J., Hilbert, David W., Austin, Mike P., Smith, Franz, Booth, Trevor H., Ellis, Nick, and Barry, Simon (2010) Uniting marine and terrestrial modelling of biodiversity under climate change. Trends in Ecology and Evolution, 25 (10). pp. 550-551.

Munday, Philip L., Cheal, Alistair J., Graham, Nicholas A.J., Meekan, Mark, Pratchett, Morgan S., Sheaves, Marcus, Sweatman, Hugh, and Wilson, Shaun K. (2009) Tropical coastal fish. Report Section. National Climate Change Adaptation Research Plans.

Monadjem, Ara, and Reside, April (2008) The influence of riparian vegetation on the distribution and abundance of bats in an African savanna. Acta Chiropterologica, 10 (2). pp. 339-348.

N

Newlands, Maxine (2013) "We will save the reef": Great Barrier Reef at risk from fossil fuel extraction. The Ecologist. p. 1.

Nunn, Patrick D., Hunter-Anderson, Rosalind, Carson, Mike T., Thomas, Frank, Ulm, Sean, and Rowland, Michael J. (2007) Times of plenty, times of less: last-millennium societal disruption in the Pacific Basin. Human Ecology, 35 (4). pp. 385-401.

O

Ow, Y.X., Vogel, N., Collier, C.J., Holtum, J.A.M., Flores, F., and Uthicke, S. (2016) Nitrate fertilisation does not enhance CO₂ responses in two tropical seagrass species. Scientific Reports, 6. 23093. pp. 1-10.

Ow, Yan X., Uthicke, Sven, and Collier, Catherine J. (2016) Light levels affect carbon utilisation in tropical seagrass under ocean acidification. PLoS ONE, 11 (3). e0150352. pp. 1-18.

Ow, Yan Xiang (2016) Interactive effects of ocean acidification and declining water quality on tropical seagrass physiology. PhD thesis, James Cook University.

Ow, Y.X., Collier, C.J., and Uthicke, S. (2015) Responses of three tropical seagrass species to CO2 enrichment. Marine Biology, 162 (5). pp. 1005-1017.

P

Pratchett, Morgan S., Caballes, Ciemon F., Newman, Stephen J., Wilson, Shaun K., Messmer, Vanessa, and Pratchett, Deborah J. (2020) Bleaching susceptibility of aquarium corals collected across northern Australia. Coral Reefs, 39. pp. 663-673.

Pratchett, Morgan S., McWilliam, Michael J., and Riegl, Bernhard (2020) Contrasting shifts in coral assemblages with increasing disturbances. Coral Reefs, 39. pp. 783-793.

Peña Jr., Santiago T. (2018) Revisiting summer infertility in the boar: impact of heat stress on the quality and DNA integrity of spermatozoa, and its mitigation by antioxidant therapy. PhD thesis, James Cook University.

Pecl, Gretta, Araújo, Miguel B., Bell, Johann D., Blanchard, Julia, Bonebrake, Timothy C., Chen, I-Ching, Clark, Timothy D., Colwell, Robert K., Danielsen, Finn, Evengård, Birgitta, Falconi, Lorena, Ferrier, Simon, Frusher, Stewart, Garcia, Raquel A., Griffis, Roger B., Hobday, Alistair J., Janion-Scheepers, Charlene, Jarzyna, Marta A., Jennings, Sarah, Lenoir, Jonathan, Linnetved, Hlif I., Martin, Victoria Y., McCormack, Phillipa C., McDonald, Jan, Mitchell, Nicola J., Mustonen, Tero, Pandolfi, John M., Pettorelli, Nathalie, Popova, Ekaterina, Robinson, Sharon A., Scheffers, Brett R., Shaw, Justine D., Sorte, Cascade J.B., Strugnell, Jan, Sunday, Jennifer M., Tuanmu, Mao-Ning, Vergés, Adriana, Villanueva, Cecilia, Wernberg, Thomas, Wapstra, Erik, and Williams, Stephen E. (2017) Biodiversity redistribution under climate change: impacts on ecosystems and human well-being. Science, 355. 6332.

Perry, Justin James (2016) Fire management and biodiversity in Northern Australia. PhD thesis, James Cook University.

Parker, Albert (2015) The Acorn adjustments of Australian temperatures are in the wrong direction. Physical Science International Journal, 6 (4). pp. 245-252.

Pike, David A., Roznik, Elizabeth A., and Bell, Ian (2015) Nest inundation from sea-level rise threatens sea turtle population viability. Royal Society Open Science, 2. 150127. pp. 1-5.

Pollock, Laura J., Rosauer, Dan F., Thornhill, Andrew H., Kujala, Heini, Crisp, Michael D., Miller, Joseph T., and McCarthy, Michael A. (2015) Phylogenetic diversity meets conservation policy: small areas are key to preserving eucalypt lineages. Philosophical Transactions of the Royal Society B: Biological Sciences, 370. 20140007. pp. 1-10.

Pintor, Anna F.V., Schwarzkopf, Lin, and Krockenberger, Andrew K. (2015) Rapoport's Rule: do climatic variability gradients shape range extent? Ecological Monographs, 85 (4). pp. 643-659.

Pisapia, Chiara (2015) Spatial, temporal and taxonomic variation in the incidence of partial mortality among reef-building corals. PhD thesis, James Cook University.

Pike, David A. (2014) Forecasting the viability of sea turtle eggs in a warming world. Global Change Biology, 20 (1). pp. 7-15.

Patail, Nuzhat (2014) Mineralogy and geochemistry of sediments on the far northern Great Barrier Reef shelf. PhD thesis, James Cook University.

Pollock, Frederic Joseph (2014) Understanding the drivers of white syndrome coral diseases on Indo-Pacific reefs. PhD thesis, James Cook University.

Pert, Petina L., Butler, James R.A., Bruce, Caroline, and Metcalfe, Daniel (2012) A composite threat indicator approach to monitor vegetation condition in the Wet Tropics, Queensland, Australia. Ecological Indicators, 18. pp. 191-199.

Paley, Allison S., and Bay, Line K. (2012) Bleaching condition varies among Acropora millepora color morphs. In: Proceedings of the 12th International Coral Reef Symposium. 9A_9. pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Pope, L.C., Vernes, K., Goldizen, A.W., and Johnson, C.N. (2012) Mating system and local dispersal patterns of an endangered potoroid, the northern bettong (Bettongia tropica). Australian Journal of Zoology, 60 (4). pp. 278-287.

Ponce-Reyes, Rocio, Reynoso-Rosales, Victor-Hugo, Watson, James E.M., VanDerWal, Jeremy, Fuller, Richard A., Pressey, Robert L., and Possingham, Hugh P. (2012) Vulnerability of cloud forest reserves in Mexico to climate change. Nature Climate Change, 2 (6). pp. 448-452.

Parsons, Jennifer G. (2011) Studying mobile species in spatially complex ecosystems: Australian flying-foxes as a case study. PhD thesis, James Cook University.

R

Riginos, Cynthia, Hock, Karlo, Matias, Ambrocio M., Mumby, Peter J., van Oppen, Madeleine J.H., and Lukoschek, Vimoksalehi (2019) Asymmetric dispersal is a critical element of concordance between biophysical dispersal models and spatial genetic structure in Great Barrier Reef corals. Diversity and Distributions, 25 (11). pp. 1684-1696.

Reed, Emma V., Cole, Julia E., Lough, Janice M., Thompson, Diane, and Cantin, Neal E. (2019) Linking climate variability and growth in coral skeletal records from the Great Barrier Reef. Coral Reefs, 38 (1). pp. 29-43.

Rowe, Cassandra, Brand, Michael, Hutley, Lindsay B., Zwart, Costijn, Wurster, Christopher, Levchenko, Vladimir, and Bird, Michael (2019) Understanding Australian tropical savanna: environmental history from a pollen perspective. Northern Territory Naturalist, 29. pp. 2-11.

Rodgers, G.G., Donelson, J.M., McCormick, M.I., and Munday, P.L. (2018) In hot water: sustained ocean warming reduces survival of a low-latitude coral reef fish. Marine Biology, 165. 73.

Richardson, Laura E., Graham, Nicholas A.J., Pratchett, Morgan S., Eurich, Jacob G., and Hoey, Andrew S. (2018) Mass coral bleaching causes biotic homogenization of reef fish assemblages. Global Change Biology, 24 (7). pp. 3117-3129.

Rieb, Jesse T., Chaplin-Kramer, Rebecca, Daily, Gretchen C., Armsworth, Paul R., Böhning-Gaese, Katrin, Bonn, Aletta, Cumming, Graeme S., Eigenbrod, Felix, Grimm, Volker, Jackson, Bethanna M., Marques, Alexandra, Pattanayak, Subhrendu K., Pereira, Henrique M., Peterson, Garry D., Ricketts, Taylor H., Robinson, Brian E., Schröter, Matthias, Schulte, Lisa A., Seppelt, Ralf, Turner, Monica G., and Bennett, Elena M. (2018) Response to Kabisch and Colleagues. BioScience, 68 (3). pp. 167-168.

Rodgers, Giverny Grace (2016) Climate change in a stable thermal environment: effects on the performance and life history of coral reef fish. PhD thesis, James Cook University.

Reside, April E., Ceccarelli, Daniela M., Isaac, Joanne L., Hilbert, David W., Moran, Cath, Llewelyn, John, Macdonald, Stewart, Hoskin, Conrad J., Pert, Petina, and Parsons, Jennifer (2014) Biodiversity: adaptation pathways and opportunities. In: Moran, Catherine, Turton, Stephen M., and Hill, Rosemary, (eds.) Adaptation Pathways and Opportunities for the Wet Tropics NRM Cluster Region: volume 1: introduction, biodiversity and ecosystem services. James Cook University, Cairns, QLD, Australia, pp. 11-74.

Rasheed, Michael A., McKenna, Skye A., Carter, Alexandra B., and Coles, Robert G. (2014) Contrasting recovery of shallow and deep water seagrass communities following climate associated losses in tropical north Queensland, Australia. Marine Pollution Bulletin, 83. pp. 491-499.

Reside, April E., VanDerWal, Jeremy, Kutt, Alex, Watson , Ian, and Williams, Stephen (2012) Fire regime shifts affect bird species distributions. Diversity and Distributions, 18 (3). pp. 213-225.

Reside, April Elizabeth (2011) Assessing climate change vulnerability: novel methods for understanding potential impacts on Australian tropical savanna birds. PhD thesis, James Cook University.

Reside, A.E., and Lumsden, L.F. (2011) Resource partitioning by two closely-related sympatric freetail bats, Mormopterus spp. In: Law, Bradley, Eby, Peggy, Lunney, Daniel, and Lumsden, Lindy, (eds.) Biology and Conservation of Australasian Bats. Royal Zoological Society of New South Wales, Mosman, N.S.W., pp. 155-166.

Reside, April E., VanDerWal, Jeremy J., Kutt, Alex S., and Perkins, Genevieve C. (2010) Weather, not climate, defines distributions of vagile bird species. PLoS ONE, 5 (10). e13569. pp. 1-9.

Russell, Richard C., Currie, Bart J., Lindsay, Michael D., Mackenzie, John S., Ritchie, Scott A., and Whelan, Peter I. (2009) Dengue and climate change in Australia: predictions for the future should incorporate knowledge from the past. Medical Journal of Australia, 190 (5). pp. 265-268.

Rowe, Cassandra (2007) Vegetation change following mid-Holocene marine transgression of the Torres Strait shelf: a record from the island of Mua, northern Australia. Holocene, 17 (7). pp. 927-937.

Rowe, Cassandra, Fraser, Rebecca, Harrison, Sandy, and Dodson, John (2007) The QUAVIDA synergy: quaternary fire, vegetation and climate change in Australasia. Quaternary International, 167-168 (Suppl.). 0489. p. 355.

S

Schlaefer, Jodie A., Wolanski, Eric, Yadav, Shreya, and Kingsford, Michael J. (2020) Behavioural maintenance of highly localised jellyfish (Copula sivickisi, class Cubozoa) populations. Marine Biology, 167. 40.

Sivaguru, Mayandi, Fouke, Kyle W., Todorov, Lauren, Kingsford, Michael J., Fouke, Kaitlyn E., Trop, Jeffrey M., and Fouke, Bruce W. (2019) Correction factors for δ 18 O-derived global sea surface temperature reconstructions from diagenetically altered intervals of coral skeletal density banding. Frontiers in Marine Science, 6. 306.

Sloss, Craig R., Nothdurft, Luke, Hua, Quan, O'Connor, Shoshannah G., Moss, Patrick T., Rosendahl, Daniel, Petherick, Lynda M., Nanson, Rachel A., Mackenzie, Lydia L., Sternes, Alison, Jacobsen, Geraldine E., and Ulm, Sean (2018) Holocene sea-level change and coastal landscape evolution in the southern Gulf of Carpentaria, Australia. Holocene, 28 (9). pp. 1411-1430.

Sandanam, Anuska, Diedrich, Amy, Gurney, Georgina G., and Richardson, Tristam D. (2018) Perceptions of cyclone preparedness: assessing the role of individual adaptive capacity and social capital in the Wet Tropics, Australia. Sustainability, 10 (4).

Sparrow, Leanne, Momigliano, Paolo, Russ, Garry R., and Heimann, Kirsten (2017) Effects of temperature, salinity and composition of the dinoflagellate assemblage on the growth of Gambierdiscus carpenteri isolated from the Great Barrier Reef. Harmful Algae, 65. pp. 52-60.

Scheffers, Brett R., Shoo, Luke, Phillips, Ben, Macdonald, Stewart L., Anderson, Alex, VanDerWal, Jeremy, Storlie, Collin, Gourret, Arnaud, and Williams, Stephen E. (2017) Vertical (arboreality) and horizontal (dispersal) movement increase the resilience of vertebrates to climatic instability. Global Ecology and Biogeography, 26 (7). pp. 787-798.

Salas Castelo, Edison Marcelo (2017) The role of factors that influence the adoption of the Australian Carbon Farming Initiative-Emissions Reduction Fund: a mixed methods study. PhD thesis, James Cook University.

Stocker, L., Harvey, N., and Metcalf, S.J. (2016) Management of coastal canal estates in Australia: challenges and opportunities. Ocean and Coastal Management, 130. pp. 148-161.

Storlie, Collin, Merino-Viteri, Andres, Phillips, Ben, VanDerWal, Jeremy, Welbergen, Justin, and Williams, Stephen (2014) Stepping inside the niche: microclimate data are critical for accurate assessment of species' vulnerability to climate change. Biology Letters, 10 (9). 20140576. pp. 1-4.

Stella, J.S., Munday, P.L., and Jones, G.P. (2011) Effects of coral bleaching on the obligate coral-dwelling crab Trapezia cymodoce. Coral Reefs, 30 (3). pp. 719-727.

Short, Fred T., Polidoro, Beth, Livingstone, Suzanne R., Carpenter, Kent E., Bandeira, Salomão, Bujang, Japar Sidik, Calumpong, Hilconida P., Carruthers, Tim J.B., Coles, Robert G., Dennison, William C., Erftemeijer, Paul L.A., Fortes, Miguel D., Freeman, Aaren S., Jagtap, T.G., Kamal, Abu Hena M., Kendrick, Gary A., Kenworthy, W. Judson, La Nafie, Yayu A., Nasution, Ichwan M., Orth, Robert J., Prathep, Anchana, Sanciangco, Jonnell C., van Tussenbroek, Brigitta, Vergara, Sheila G., Waycott, Michelle, and Zieman, Joseph C. (2011) Extinction risk assessment of the world's seagrass species. Biological Conservation, 144 (7). pp. 1961-1971.

Stella, Jessica S., Pratchett, Morgan S., Hutchings, Pat A., and Jones, Geoffrey P. (2011) Coral-associated invertebrates: diversity, ecology importance and vulnerability to disturbance. Oceanography and Marine Biology: an annual review, 49. pp. 43-104.

Schneider, Kenneth, Silverman, Jacob, Woolsey, Erika, Eriksson, Hampus, Byrne, Maria, and Caldeira, Ken (2011) Potential influence of sea cucumbers on coral reef CaCO3 budget: a case study at One Tree Reef. Journal of Geophysical Research: biogeosciences, 116. G04032-G04032.

Shoo, Luke P., Storlie, Collin, Williams, Yvette M., and Williams, Stephen E. (2010) Potential for mountaintop boulder fields to buffer species against extreme heat stress under climate change. International Journal of Biometeorology, 54 (4). pp. 475-478.

Seneca, Francois O., Forêt , Sylvain, Ball, Eldon E., Smith-Keune, Carolyn, Miller, David J., and van Oppen, Madeleine J.H. (2010) Patterns of gene expression in a scleractinian coral undergoing natural bleaching. Marine Biotechnology, 12 (5). pp. 594-604.

Seneca, François (2010) The molecular stress response in the Indo-Pacific model scleractinian coral, Acropora millepora. PhD thesis, James Cook University.

Shoo, Luke P., Anderson, Alex, and Williams, Stephen (2009) On the isolated population of Lewin’s Honeyeater (Meliphaga lewinii amphochlora) from the McIlwraith Range uplands, Cape York Peninsula, Australia: estimates of population size and distribution. Emu: austral ornithology, 109 (4). pp. 288-293.

T

Tng, David Y.P., Apgaua, Deborah M.G., Campbell, Mason J., Cox, Casey J., Crayn, Darren M., Ishida, Fraçoise Y., Laidlaw, Melinda J., Liddell, Michael J., Seager, Michael, and Laurance, Susan G.W. (2016) Vegetation and floristics of a lowland tropical rainforest in northeast Australia. Biodiversity Data Journal, 4 (e7599). pp. 1-20.

Tremblay, P., Grover, R., Maguer, J.F., Hoogenboom, M., and Ferrier-Pagès, C. (2014) Carbon translocation from symbiont to host depends on irradiance and food availability in the tropical coral Stylophora pistillata. Coral Reefs, 33 (1). pp. 1-13.

Torello Raventos, Mireia (2014) Environmental controls on wood density in tropical forests. PhD thesis, James Cook University.

Turton, Stephen M., Hill, Rosemary, and Moran, Catherine (2014) Introduction. In: Moran, Catherine, Turton, Stephen M., and Hill, Rosemary, (eds.) Adaptation Pathways and Opportunities for the Wet Tropics NRM Cluster Region: volume 1: introduction, biodiversity and ecosystem services. James Cook University, Cairns, QLD, Australia, pp. 1-10.

Taylor, Subhashni, and Kumar, Lalit (2013) Potential distribution of an invasive species under climate change scenarios using CLIMEX and soil drainage: a case study of Lantana camara L. in Queensland, Australia. Journal of Environmental Management, 114. pp. 414-422.

Takahashi, Miwa, McCormick, Mark, Munday, Philip, and Jones, Geoffrey (2012) Influence of seasonal and latitudinal temperature variation on early life-history traits of a coral reef fish. Marine and Freshwater Research, 63. pp. 856-864.

Turton, Stephen M., and Dale, Allan (2007) An assessment of the environmental impacts of Cyclone Larry on the forest landscapes of northeast Queensland, with reference to responses to natural resource management issues in the aftermath. Report. James Cook University & CSIRO, Cairns, QLD, Australia.

U

Udyawer, V., Simpfendorfer, C.A., Read, M., Hamann, M., and Heupel, M.R. (2016) Exploring habitat selection in sea snakes using passive acoustic monitoring and Bayesian hierarchical models. Marine Ecology Progress Series, 546. pp. 249-262.

Unsworth, Richard K.F., Collier, Catherine J., Henderson, Gideon M., and McKenzie, Len J. (2012) Tropical seagrass meadows modify seawater carbon chemistry: implications for coral reefs impacted by ocean acidification. Environmental Research Letters, 7 (2). pp. 1-9.

V

van Oppen, Madeleine J.H ., Lukoschek, Vimoksalehi, Berkelmans, Ray, Peplow, Lesa M., and Jones, Alison M. (2015) A population genetic assessment of coral recovery on highly disturbed reefs of the Keppel Island archipelago in the southern Great Barrier Reef. PeerJ, 3. e1092. pp. 1-17.

van der Meer, M.H., Jones, G.P., Hobbs, J.-P.A., and Van Herwerden, L. (2012) Historic hybridization and introgression between two iconic Australian anemonefish and contemporary patterns of population connectivity. Ecology and Evolution, 2 (7). pp. 1592-1604.

W

Weideli, Ornella C., Bouyoucos, Ian A., Papastamatiou, Yannis P., Mescam, Gauthier, Rummer, Jodie L., and Planes, Serge (2019) Same species, different prerequisites: investigating body condition and foraging success in young reef sharks between an atoll and an island system. Scientific Reports, 9. 13447.

Wilkinson, Adam D., Collier, Catherine J., Flores, Florita, Langlois, Lucas, Ralph, Peter J., and Negri, Andrew P. (2017) Combined effects of temperature and the herbicide diuron on Photosystem II activity of the tropical seagrass Halophila ovalis. Scientific Reports, 7. 45404. pp. 1-11.

Winter, John, Green, Dave, Thorsborne, Margaret, and Parsons, Mark (2016) Population trends over 50 years of a Pied Imperial-Pigeon breeding colony on North Brook Island, a tropical Great Barrier Reef island, Australia. Emu: austral ornithology, 116 (1). pp. 14-21.

Williams, Stephen E., Scheffers, Brett R., and Isaac, Joanne L. (2014) Australian tropical rainforests. In: Lindenmayer, David, Dovers, Stephen, and Morton, Chris, (eds.) Ten Commitments Revisited: securing Australia's future environment. CSIRO Publishing, Collingwood, VIC, Australia, pp. 83-89.

Woolsey, Erika S. (2014) Coral larval ecology and biogeography in a warming ocean. PhD thesis, James Cook University.

Wilson, Shaun K., Graham, Nicholas A.J., and Pratchett, Morgan S. (2014) Susceptibility of butterflyfish to habitat disturbance: do 'chaets' ever prosper? In: Pratchett, Morgan S., Berumen, Michael L., and Kapoor, B.G., (eds.) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA, pp. 226-245.

Weeks , S.J., Steinberg, C., and Congdon, B.C. (2013) Oceanography and seabird foraging: within-season impacts of increasing sea-surface temperature on the Great Barrier Reef. Marine Ecology Progress Series, 490. pp. 247-254.

Woolsey, Erika (2012) Self-fertilization suppresses thermal tolerance in embryos of reef-building coral. In: Proceedings of the 12th International Coral Reef Symposium. 12A_5. pp. 1-4. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.

Wilson, Robyn, and Turton, Steve (2011) Climate change adaptation options, tools and vulnerability. Contribution of Work Package 4 to the Forest Vulnerability Assessment. Report. National Climate Change Adaptation Research Facility (NCCARF), Gold Coast, QLD, Australia.

Williams, Stephen E., Isaac, Joanne L., and Shoo, Luke P. (2008) The impact of climate change on the biodiversity and ecosystem functions of the wet tropics. In: Stork, Nigel E., and Turton, Stephen M., (eds.) Living in a Dynamic Tropical Forest Landscape. Blackwell Publishing, Malden. MA, USA, pp. 282-294.

Woodroffe, C.D., Smithers, S.G., and McGregor, H.V. (2008) Coral microatolls and their role as fixed biological indicators of Holocene sea-level changes. In: Proceedings of the Western Pacific Geophysics Meeting. GC54A-06. From: 2008 Western Pacific Geophysics Meeting, 29 July - 1 August 2008, Cairns, QLD, Australia.

Waycott, Michelle, Collier, Catherine, McMahon, Kathryn, Ralph, Peter, McKenzie, Len, Udy, James, and Grech, Alana (2007) Vulnerability of seagrasses in the Great Barrier Reef to climate change. In: Johnson, Johanna E., and Marshall, Paul A., (eds.) Climate Change and the Great Barrier Reef: a vulnerability assessment. Great Barrier Reef Marine Park Authority and Australian Greenhouse Office, Townsville, QLD, Australia, pp. 193-236.

Williams, Stephen E., and Hilbert, David W. (2006) Climate change as a threat to the biodiversity of tropical rainforests in Australia. In: Laurance, William F., and Peres, Carlos A., (eds.) Emerging threats to tropical forests. University of Chicago Press, Chicago, USA, pp. 33-52.

Y

Younes Cárdenas, Nicolás, Joyce, Karen E., and Maier, Stefan W. (2017) Monitoring mangrove forests: are we taking full advantage of technology? International Journal of Applied Earth Observation and Geoinformation, 63. pp. 1-14.

Z

Zarco-Perello, Salvador, Pratchett, Morgan, and Liao, Vetea (2012) Temperature-growth performance curves for a coral reef fish, Acanthochromis polyacanthus. Galaxea, Journal of Coral Reef Studies, 14. pp. 1-7.