Items where Subject is "06 BIOLOGICAL SCIENCES > 0604 Genetics > 060405 Gene Expression (incl Microarray and other genome-wide approaches)"

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Karako-Lampert, Sarit, Zoccola, Didier, Salmon-Divon, Mali, Katzenellenbogen, Mark, Tambutté, Sylvie, Bertucci, Anthony, Hoegh-Guldberg, Ove, Deleury, Emeline, Allemand, Denis, and Levy, Oren (2014) Transcriptome analysis of the scleractinian coral Stylophora pistillata. PLoS ONE, 9 (2). pp. 1-11.

Ogawa, D., Bobeszko, T., Ainsworth, T., and Leggat, W. (2013) The combined effects of temperature and CO₂ lead to altered gene expression in Acropora aspera. Coral Reefs, 32 (4). pp. 895-907.

Pujolar, J.M., Milan, M., Marino, I.A.M., Capoccioni, F., Ciccotti, E., Belpaire, C., Covaci, A., Malarvannan, G., Patarnello, T., Bargelloni, L., Zane, L., and Maes, G.E. (2013) Detecting genome-wide gene transcription profiles associated with high pollution burden in the critically endangered European eel. Aquatic Toxicology, 132-133. pp. 157-164.

Chen, Jiandong, Waltenspiel, Bernhard, Warren, William D., and Wagner, Eric. J. (2013) Functional analysis of the integrator subunit 12 identifies a microdomain that mediates activation of the Drosophila integrator complex. Journal of Biological Chemistry, 288 (7). pp. 4867-4877.

Maes, G.E., Raeymaekers, J.A.M., Hellemans, B., Geeraerts, C., Parmentier, K., De Temmerman, L., Volckaert, F.A.M., and Belpaire, C. (2013) Gene transcription reflects poor health status of resident European eel chronically exposed to environmental pollutants. Aquatic Toxicology, 126. pp. 242-255.

Veilleux, Heather D., Van Herwerden, Lynne, Cole, Nicholas J., Don, Emily K., De Santis, Christian, Dixson, Danielle L., Wenger, Amelia S., Munday, Philip L., and UNSPECIFIED (2013) Otx2 expression and implications for olfactory imprinting in the anemonefish, Amphiprion percula. Biology Open, 2 (9). pp. 907-915.

Reyes-Bermudez, Alejandro, Miller, David J., and Sprungala, Susanne (2012) The neuronal calcium sensor protein acrocalcin: a potential target of calmodulin regulation during development in the coral Acropora millepora. PLoS ONE, 7 (12). pp. 1-8.

Chen, Jiandong, Ezzeddine, Nader, Waltenspiel, Bernhard, Albrecht, Todd R., Warren, William D., Marzluff, William F., and Wagner, Eric J. (2012) An RNAi screen identifies additional members of the Drosophila Integrator complex and a requirement for cyclin C/Cdk8 in snRNA 3'-end formation. RNA, 18 (12). pp. 2148-2156.

Roberts, Alexandra A., Schultz, Andrew W., Kersten, Roland D., Dorrestein, Pieter C., and Moore, Bradley S. (2012) Iron acquisition in the marine actinomycete genus Salinispora is controlled by the desferrioxamine family of siderophores. FEMS Microbiology Letters, 335 (2). pp. 95-103.

Pujolar, Jose Martin, Marino, Ilaria A.M., Milan, Massimo, Coppe, Alessandro, Maes, Gregory E., Capoccioni, Fabrizio, Ciccotti, Eleonora, Bervoets, Lieven, Covaci, Adrian, Belpaire, Claude, Cramb, Gordon, Patarnello, Tomaso, Bargelloni, Luca, Bortoluzzi, Stefania, and Zane, Lorenzo (2012) Surviving in a toxic world: transcriptomics and gene expression profiling in response to environmental pollution in the critically endangered European eel. BMC Genomics, 13. pp. 1-21.

Moya, A., Huisman, L., Ball, E.E., Hayward, D.C., Grasso, L.C., Chua, C.M., Woo, H.N., Gattuso , J.-P, Forêt, S., and Miller, D.J. (2012) Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO2-driven acidification during the initiation of calcification. Molecular Ecology, 21 (10). pp. 2440-2454.

Bellantuono, Anthony J., Granados-Cifuentes, Camila, Miller, David J., Hoegh-Guldberg, Ove, and Rodriguez-Lanetty, Mauricio (2012) Coral thermal tolerance: tuning gene expression to resist thermal stress. PLoS ONE, 7 (11). pp. 1-14.

Edmunds, Richard C., Smith-Keune, Carolyn, Van Herwerden, Lynne, Fulton, Chris J., and Jerry, Dean R. (2012) Exposing local adaptation: synergistic stressors elicit population-specific lactate dehydrogenase-B (ldh-b) expression profiles in Australian barramundi, Lates calcarifer. Aquatic Sciences, 74 (1). pp. 171-178.

Kaniewska, Paulina, Campbell, Paul R., Kline, David I., Rodriguez-Lanetty, Mauricio, Miller, David J., Dove, Sophie, and Hoegh-Guldberg, Ove (2012) Major cellular and physiological impacts of ocean acidification on a reef building coral. PLoS ONE, 7 (4). pp. 1-12.

Manuel, Michael, and Foret, Sylvain (2012) Searching for Eve: basal metazoans and the evolution of multicellular complexity. BioEssays, 34 (3). pp. 247-251.

Vieira, Filipe G., Foret, Sylvain, He, Xiaoli, Rozas, Julio, Field, Linda M., and Zhou, Jing-Jiang (2012) Unique features of odorant-binding proteins of the parasitoid wasp Nasonia vitripennis revealed by genome annotation and comparative analyses. PLoS One, 7 (8). pp. 1-11.

Bernatchez, Louis, St-Cyr, Jérôme, Normandeau, Eric, Maes, Gregory E., Als, Thomas D., Kalujnaia, Svetlana, Cramb, Gordon, Castonguay, Martin, and Hansen, Michael M. (2011) Differential timing of gene expression regulation between leptocephali of the two Anguilla eel species in the Sargasso Sea. Ecology and Evolution, 1 (4). pp. 459-467.

Miller, David, Ball, Eldon E., Foret, Sylvain, and Satoh, Nori (2011) Coral genomics and transcriptomics — ushering in a new era in coral biology. Journal of Experimental Marine Biology and Ecology, 408 (1-2). pp. 114-119.

McGraw, Elizabeth A., Ye, Yixin H., Foley, Brad, Chenoweth, Stephen F., Higgie, Megan, Hine, Emma, and Blows, Mark W. (2011) High-dimensional variance partitioning reveals the modular genetic basis of adaptive divergence in gene expression during reproductive character displacement. Evolution, 65 (11). pp. 3126-3137.

Milano, Ilaria, Babbucci, Massimiliano, Panitz, Frank, Ogden, Rob, Nielsen, Rasmus O., Taylor, Martin I., Helyar, Sarah J., Carvalho, Gary R., Espiñeira, Montserrat, Atanassova, Miroslava, Tinti, Fausto, Maes, Gregory E., Patarnello, Tomaso, FishPop Trace Consortium, , and Bargelloni, Luca (2011) Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake. PLoS ONE, 6 (11). pp. 1-13.

Kenkel, Carly D., Aglyamova, Galina, Alamaru, Ada, Bhagooli, Ranjeet, Capper, Roxanna, Cunning, Ross, de Villiers, Amanda, Haslun, Joshua A., Hédouin, Laetitia, Keshavmurthy, Shashank, Kuehl, Kristin A., Mahmoud, Huda, McGinty, Elizabeth S., Montoya-Maya, Phanor H., Palmer, Caroline V., Pantile, Raffaella, Sánchez, Juan A., Schils, Tom, Silverstein, Rachel N., Squiers, Logan B., Tang, Pei-Ciao, Goulet, Tamar L., and Matz, Mikhail V. (2011) Development of gene expression markers of acute heat-light stress in reef-building corals of the genus Porites. PLoS ONE, 6 (10). pp. 1-9.

Hayward, David C., Hetherington, Suzannah, Behm, Carolyn A., Grasso, Lauretta C., Forêt, Sylvain, Miller, David J., and Ball, Eldon E. (2011) Differential gene expression at coral settlement and metamorphosis: a subtractive hybridization study. PLoS ONE, 6 (10). pp. 1-18.

Shinzato, Chuya, Shoguchi, Eiichi, Kawashimi, Takeshi, Hamada, Mayuko, Hisata, Kanako, Tanaka, Makiko, Fujie, Manabu, Fujiwara, Mayuki, Koyanagi, Ryo, Ikuta, Tetsuro, Fujiyama, Asao, Miller, David J., and Satoh, Nori (2011) Using the Acropora digitifera genome to understand coral responses to environmental change. Nature, 476 (7360). pp. 320-323.

De Santis, Christian, Wade, Nicholas M., Jerry, Dean R., Preston, Nigel P., Glencross, Brett D., and Sellars, Melony J. (2011) Growing backwards: an inverted role for the shrimp ortholog of vertebrate myostatin and GDF11. Journal of Experimental Biology, 214 (16). pp. 2671-2677.

Ganot, P, Moya, Aurelie, Magnone, V, Allemand, D, Furla, P, and Sabourault, C (2011) Adaptations to Endosymbiosis in a Cnidarian- Dinoflagellate Association: Differential Gene Expression and Specific Gene Duplications. PLoS Genetics, 7 (7). e1002187-e1002187.

Todd, Erica, Blair, David, Hamann, Mark, and Jerry, Dean (2011) Twenty-nine microsatellite markers for two Australian freshwater turtles, Elseya albagula and Emydura macquarii krefftii: development from 454-sequence data and utility in related taxa. Conservation Genetics Resources, 3 (3). pp. 449-456.

Iguchi, Akira, Shinzato, Chuya , Forêt, Sylvain, and Miller, David J. (2011) Identification of fast-evolving genes in the scleractinian Coral Acropora using comparative EST analysis. PLoS ONE, 6 (6). pp. 1-6.

Grasso, L.C. , Negri, A.P. , Fôret, S. , Saint, R. , Hayward, D.C. , Miller, D.J., and Ball, E.E. (2011) The biology of coral metamorphosis: molecular responses of larvae to inducers of settlement and metamorphosis. Developmental Biology, 353 (2). pp. 411-419.

Lange, Christina, Hemmrich, Georg, Klostermeier, Ulrich C. , López-Quintero, Javier A. , Miller, David J., Rahn, Tasja, Weiss, Yvonne, Bosch, Thomas C.G., and Rosenstiel, Philip (2011) Defining the origins of the NOD-like receptor system at the base of animal evolution. Molecular Biology and Evolution, 28 (5). pp. 1687-1702.

De Santis, Christian, Smith-Keune, Carolyn, and Jerry, Dean R. (2011) Normalizing RT-qPCR data: are we getting the right answers? An appraisal of normalization approaches and internal reference genes from a case study in the Finfish Lates calcarifer. Marine Biotechnology, 13 (2). pp. 170-180.

De Santis, C., and Jerry, D.R. (2011) Differential tissue-regulation of myostatin genes in the teleost fish Lates calcarifer in response to fasting. Evidence for functional differentiation. Molecular and Cellular Endocrinology, 335 (2). 158-165 .

Shaddick, Kim, Gilligan, Dean M., Burridge, Christopher P., Jerry, Dean R., Truong, Kiet, and Beheregaray, Luciano B. (2011) Historic divergence with contemporary connectivity in a catadromous fish, the estuary perch (Macquaria colonorum). Canadian Journal of Fisheries and Aquatic Sciences, 68 (2). pp. 304-318.

Levy, O., Kaniewska, P., Alon, S., Eisenberg, E., Karako-Lampert , S., Bay, L.K., Reef, R., Rodriguez-Lanetty , M., Miller, D.J., and Hoegh-Guldberg, O. (2011) Complex diel cycles of gene expression in coral-algal symbiosis. Science, 331 (6014). p. 175.

Forêt, Sylvain, Seneca, François , De Jong, Danielle, Bieller, Annette , Hemmrich, Georg , Augustin, Rene , Hayward, David C. , Ball, Eldon E. , Bosch, Thomas C.G. , Agata, Kiyokazu , Hassel, Monika , and Miller, David J. (2011) Phylogenomics reveals an anomalous distribution of USP genes in metazoans. Molecular Biology and Evolution, 28 (1). pp. 153-161.

Stolarski, Jarosław, Kitahara, Marcelo V., Miller, David J., Cairns, Stephen D., Mazur, Maciej, and Meibom, Anders (2011) The ancient evolutionary origins of Scleractinia revealed by azooxanthellate corals. BMC Evolutionary Biology, 11. pp. 1-10.

Seneca, Francois O., Forêt , Sylvain, Ball, Eldon E., Smith-Keune, Carolyn, Miller, David J., and van Oppen, Madeleine J.H. (2010) Patterns of gene expression in a scleractinian coral undergoing natural bleaching. Marine Biotechnology, 12 (5). pp. 594-604.

Coppe, Alessandro, Pujolar, Jose Martin, Maes, Gregory E., Larsen, Peter F., Hansen, Michael M., Bernatchez, Louis, Zane, Lorenzo, and Bortoluzzi, Stefania (2010) Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel. BMC Genomics, 11. pp. 1-13.

Cantacessi, C., Loukas, A., Campbell, B.E., Mulvenna, J., Ong, E.K., Zhong, W., Sternberg, P.W., Otranto, D., and Gasser, R.B. (2009) Exploring transcriptional conservation between Ancylostoma caninum and Haemonchus contortus by oligonucleotide microarray and bioinformatic analyses. Molecular and Cellular Probes, 23 (1). pp. 1-9.

Pujolar, J.M., Maes, G.E., Van Houdt, J.K.J., and Zane, L. (2009) Isolation and characterization of expressed sequence tag-linked microsatellite loci for the European eel (Anguilla anguilla). Molecular Ecology Resources, 9 (1). pp. 233-235.

Reyes-Bermudez, Alejandro, Lin, Zhiyi, Hayward, David C., Miller, David J., and Ball, Eldon E. (2009) Differential expression of three galaxin-related genes during settlement and metamorphosis in the scleractinian coral Acropora millepora. BMC Evolutionary Biology, 9 (178). - .

Smith-Keune, C., and Dove, S. (2008) Gene expression of a green fluorescent protein homolog as a host-specific biomarker of heat stress within a reef-building coral. Marine Biotechnology, 10 (2). pp. 166-180.

Huang, Cui-Qin, Gasser, Robin B., Cantacessi, Cinzia, Nisbet, Alaisdar J., Zhong, Weiwei, Sternberg, Paul W., Loukas, Alex, Mulvenna, Jason, Lin, Rui-Qing, Chen, Ning, and Zhu, Xing-Quan (2008) Genomic-bioinformatic analysis of transcripts enriched in the third-stage larva of the parasitic nematode Ascaris suum. PLoS Neglected Tropical Diseases, 2 (6). pp. 1-12.

Schlüns, H., and Crozier, R.H. (2007) Relish regulates expression of antimicrobial peptide genes in the honeybee, Apis mellifera, shown by RNA interference. Insect Molecular Biology, 16 (6). pp. 753-759.

Kassahn, Karin S., Crozier, Ross H., Ward, Alister C., Stone, Glenn, and Caley, M. Julian (2007) From transcriptome to biological function: environmental stress in an ectothermic vertebrate, the coral reef fish Pomacentrus moluccensis. BMC Genomics, 8 (358). pp. 1-16.

Kassahn, Karin S., Caley, M. Julian, Ward, Alister C., Connolly, Ashley R., Stone, Glenn, and Crozier, Ross H. (2007) Heterologous microarray experiments used to identify the early gene response to heat stress in a coral reef fish. Molecular Ecology, 16 (8). pp. 1749-1763.

de Jong, Danielle M., Hislop, Nikki R., Hayward, David C., Reece-Hoyes, John S., Pontynen, Patricia C., Ball, Eldon E., and Miller, David J. (2006) Components of both major axial patterning systems of the Bilateria are differentially expressed along the primary axis of a 'radiate' animal, the anthozoan cnidarian Acropora millepora. Developmental Biology, 298 (2). pp. 632-643.

Morgan, I, Kucharski, R, Krongkaew, N, Firth, SI, Megaw, P, and Maleszka, R (2004) Screening for differential gene expression during the development of form-deprivation myopia in the chicken. Optometry and vision science, 81 (2). pp. 148-155.

Nordström, Karin, Scholten, Ingo, Nordström, Johanna, Larhammer, Dan, and Miller, David (2003) Mutational analysis of the Acropora millepora PaxD paired domain highlights the importance of the linker region for DNA binding. Gene, 320 (27). pp. 81-87.

Ball, Eldon E., Hayward, David C., Reece-Hoyes, John S., Hislop, Nikki R., Samuel, Gabrielle, Saint, Robert, Harrison, Peter L., and Miller, David J. (2002) Coral development: from classical embryology to molecular control. International Journal of Developmental Biology, 46 (4). pp. 671-678.

Samuel, Gabrielle, Miller, David, and Saint, Robert (2001) Conservation of a DPP/BMP signaling pathway in the nonbilateral cnidarian Acropora millepora. Evolution & Development, 3 (4). pp. 241-250.

Jordan, M.A., Marques, I., Rosendorff, J., and de Ravel, T.J.L. (1998) Trisomy 8 mosaicism: a further five cases illustrating marked clinical and cytogenetic variability. Genetic Counseling, 9 (2). pp. 139-146.

Book Chapter

Ball, Eldon E., de Jong, Danielle M., Schierwater, Bernd, Shinzato, Chuya, Hayward, David C., and Miller, David J. (2011) Cnidarian gene expression patterns and the origins of bilaterality – are cnidarians reading the same game plan as "higher" animals? In: DeSalle, Rob, and Schierwater, Bernd, (eds.) Key Transitions in Animal Evolution. Science Publishers, Enfield, NH, USA, pp. 197-216.

Conference Item

Rocker, Melissa M., Willis, Bette L., and Bay, Line K. (2012) Thermal stress-related gene expression in corals with different Symbiodinium types. In: Proceedings of the 12th International Coral Reef Symposium, pp. 1-5. From: 12th International Coral Reef Symposium, 9-13 July 2012, Cairns, QLD, Australia.


Ukolova, Svetlana (2012) Characterization of the Wnt signalling system in the coral Acropora millepora. PhD thesis, James Cook University.

Waltenspiel, Bernhard (2011) Characterisation of the gene deflated, the Drosophila melanogaster orthologue of human Integrator subunit 7. PhD thesis, James Cook University.

Seneca, François (2010) The molecular stress response in the Indo-Pacific model scleractinian coral, Acropora millepora. PhD thesis, James Cook University.

Beltran Ramirez, Victor (2010) Molecular aspects of the fluorescent protein homologues in Acropora millepora. PhD thesis, James Cook University.

Tems, Ursula (2009) Characterization of the carbonic anhydrase isozymes of zea mays. PhD thesis, James Cook University.

Shinzato, Chuya (2007) Cnidarian Sox genes and the evolution of function in the Sox gene family. PhD thesis, James Cook University.

de Jong, Danielle (2005) Characterisation of homologs of nervous system patterning genes in the staghorn coral, Acropora millepora (Cnidaria; Anthozoa; Scleractinia). PhD thesis, James Cook University.

This list was generated on Wed Apr 16 20:35:58 2014 EST.