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Reynolds, Chevonne, and Cumming, Graeme S. (2016) Defining functional groups using dietary data: quantitative comparison suggests functional classification for seed-dispersing waterfowl. Basic and Applied Ecology, 17 (4). pp. 333-343.

van Gorsel, Eva, Wolf, Sebastian, Cleverly, James, Isaac, Peter, Haverd, Vanessa, Ewenz, Cäcilia, Arndt, Stefan, Beringer, Jason, Resco de Dios, Víctor, Evans, Bradley J., Griebel, Anne, Hutley, Lindsay B., Keenan, Trevor, Kljun, Natascha, Macfarlane, Craig, Meyer, Wayne S., McHugh, Ian, Pendall, Elise, Prober, Suzanne M., and Silberstein, Richard (2016) Carbon uptake and water use in woodlands and forests in southern Australia during an extreme heat wave event in the “Angry Summer” of 2012/2013. Biogeosciences, 13 (21). pp. 5947-5964.

Haverd, V., Smith, B., Raupach, M., Briggs, P., Nieradzik, L., Beringer, J., Hutley, L., Trudinger, C.M., and Cleverly, J. (2016) Coupling carbon allocation with leaf and root phenology predicts tree–grass partitioning along a savanna rainfall gradient. Biogeosciences, 13. pp. 761-779.

Ma, Xuanlong, Huete, Alfredo, Cleverly, James, Eamus, Derek, Chevallier, Frédéric, Joiner, Joanna, Poulter, Benjamin, Zhang, Yongguang, Guanter, Luis, Meyer, Wayne, Xie, Zunyi, and Ponce-Campos, Guillermo (2016) Drought rapidly diminishes the large net CO2 uptake in 2011 over semi-arid Australia. Scientific Reports, 6. 37747.

Griebel, Anne, Bennett, Lauren T., Metzen, Daniel, Cleverly, Jamie, Burba, George, and Arndt, Stefan K. (2016) Effects of inhomogeneities within the flux footprint on the interpretation of seasonal, annual, and interannual ecosystem carbon exchange. Agricultural and Forest Meteorology, 221. pp. 50-60.

Zhao, Wenzhi, Liu, Bing, Chang, Xuexiang, Yang, Qiyue, Yang, Yuting, Liu, Zhiling, Cleverly, James, and Eamus, Derek (2016) Evapotranspiration partitioning, stomatal conductance, and components of the water balance: A special case of a desert ecosystem in China. Journal of Hydrology, 538. pp. 374-386.

Nash, Kirsty L., Graham, Nicholas A.J., Jennings, Simon, Wilson, Shaun K., and Bellwood, David R. (2016) Herbivore cross-scale redundancy supports response diversity and promotes coral reef resilience. Journal of Applied Ecology, 53. pp. 646-655.

Zhuang, W., Cheng, L., Whitley, R., Shi, H., Beringer, J., Wang, Y., He, L., Cleverly, J., Eamus, D., and Yu, Q. (2016) How energy and water availability constrain vegetation water-use along the North Australian Tropical Transect. International Journal of Plant Production, 10 (3). pp. 403-423.

Mellin, C., Mouillot, D., Kulbicki, M., McClanahan, T.R., Vigliola, L., Bradshaw, C.J.A., Brainard, R.E., Chabanet, P., Edgar, G.J., Fordham, D.A., Friedlander, A.M., Parravicini, V., Sequeira, A.M.M., Stuart-Smith, R.D., Wantiez, L., and Caley, M.J. (2016) Humans and seasonal climate variability threaten large-bodied coral reef fish with small ranges. Nature Communications, 7. 10491. pp. 1-9.

Mokany, Karel, Ferrier, Simon, Connolly, Sean R., Dunstan, Piers K., Fulton, Elizabeth A., Harfoot, Michael B., Harwood, Thomas D., Richardson, Anthony J., Roxburgh, Stephen H., Scharlemann, Jörn P.W., Tittensor, Derek P., Westcott, David A., and Wintle, Brendan A. (2016) Integrating modelling of biodiversity composition and ecosystem function. Oikos, 125 (1). pp. 10-19.

Filipe, João C., Jorge, Andreia, Eren, Özkan, Sotes, Gastón, Hierro, José, and Montesinos, Daniel (2016) Invasive and non-invasive congeneric centaurea (Asteraceae) show contrasting patterns of herbivory by snails. Plant Ecology and Evolution, 149 (2). pp. 228-232.

Restrepo-Coupe, Natalia, Huete, Alfredo, Davies, Kevin, Cleverly, James, Beringer, Jason, Eamus, Derek, van Gorsel, Eva, Hutley, Lindsay B., and Meyer, Wayne S. (2016) MODIS vegetation products as proxies of photosynthetic potential along a gradient of meteorologically and biologically driven ecosystem productivity. Biogeosciences, 13 (19). pp. 5587-5608.

Chen, Chao, Cleverly, James, Zhang, Lu, Yu, Qiang, and Eamus, Derek (2016) Modelling Seasonal and Inter-annual Variations in Carbon and Water Fluxes in an Arid-Zone Acacia Savanna Woodland, 1981–2012. Ecosystems, 19. pp. 625-644.

Eamus, Derek, Huete, Alfredo, Cleverly, James, Nolan, Rachael H., Ma, Xuanlong, Tarin, Tonantzin, and Santini, Nadia S. (2016) Mulga, a major tropical dry open forest of Australia: recent insights to carbon and water fluxes. Environmental Research Letters, 11 (12). 125011.

van de Leemput, Ingrid A., Hughes, Terry P., van nes, Egbert H., and Scheffer, Marten (2016) Multiple feedbacks and the prevalence of alternate stable states on coral reefs. Coral Reefs, 35 (3). pp. 857-865.

Cleverly, Jamie, Eamus, Derek, Van Gorsel, Eva, Chen, Chao, Rumman, Rizwana, Luo, Qunying, Coupe, Natalia Restrepo, Li, Longhui, Kljun, Natascha, Faux, Ralph, Yu, Qiang, and Huete, Alfredo (2016) Productivity and evapotranspiration of two contrasting semiarid ecosystems following the 2011 global carbon land sink anomaly. Agricultural and Forest Meteorology, 220. pp. 151-159.

Ferrari, Renata, Bryson, Mitch, Bridge, Tom, Hustache, Julie, Williams, Stefan B., Byrne, Maria, and Figueira, Will (2016) Quantifying the response of structural complexity and community composition to environmental change in marine communities. Global Change Biology, 22 (5). pp. 1965-1975.

Leitão, Rafael P., Zuanon, Jansen, Villeger, Sebastien, Williams, Stephen E., Baraloto, Christopher, Fortunel, Claire, Mendonça, Fernando P., and Mouillot, David (2016) Rare species contribute disproportionately to the functional structure of species assemblages. Proceedings of the Royal Society of London Series B, Biological Sciences, 283 (1828). pp. 1-9.

Scott, A.L., and Henderson, P.A. (2016) Seasonal and age-related migrations in the unexpectedly long-lived benthic fish the lesser weever, Echiichthys vipera (Cuvier, 1829). Journal of the Marine Biological Association of the United Kingdom, 96 (6). pp. 1287-1293.

Cleverly, Jamie, Eamus, Derek, Restrepo Coupe, Natalia, Chen, Chao, Maes, Wouter, Li, Longhui, Faux, Ralph, Santini, Nadia S., Rumman, Rizwana, Yu, Qiang, and Huete, Alfredo (2016) Soil moisture controls on phenology and productivity in a semi-arid critical zone. Science of the Total Environment, 568. pp. 1227-1237.

D'agata, Stéphanie, Vigliola, Laurent, Graham, Nicholas A.J., Wantiez, Laurent, Parravicini, Valeriano, Villéger, Sébastien, Mou-Tham, Gerard, Frolla, Philippe, Friedlander, Alan M., Kulbicki, Michel, and Mouillot, David (2016) Unexpected high vulnerability of functions in wilderness areas: evidence from coral reef fishes. Proceedings of the Royal Society of London Series B, Biological Sciences, 283 (1844). 20160128. pp. 1-10.

Waltham, Nathan (2016) Unravelling life history of the Inland Freshwater Crab Austrothelphusa transversa in seasonal tropical river catchments. Australian Zoologist, 38 (2). pp. 217-222.

Santini, Nadia S., Cleverly, James, Faux, Rolf, Lestrange, Catherine, Rumman, Rizwana, and Eamus, Derek (2016) Xylem traits and water-use efficiency of woody species co-occurring in the Ti Tree Basin arid zone. Trees, 30. pp. 295-303.

Cleverly, Jamie, Eamus, Derek, Luo, Qunying, Restrepo Coupe, Natalia, Kljun, Natascha, Ma, Xuanlong, Ewenz, Cacilia, Li, Longhui, Yu, Qiang, and Huete, Alfredo (2016) The importance of interacting climate modes on Australia’s contribution to global carbon cycle extremes. Scientific Reports, 6. 23113.

Zolfaghar, Sepideh, Villalobos-vega, Randol, Cleverly, James, and Eamus, Derek (2015) Co-ordination among leaf water relations and xylem vulnerability to embolism o fEucalyptus trees growing along a depth-to-groundwater gradient. Tree Physiology, 35 (7). pp. 732-743.

Cleverly, James, Thibault, James R., Teet, Stephen B., Tashjian, Paul, Hipps, Lawrence E., Dahm, Clifford N., and Eamus, Derek (2015) Flooding Regime Impacts on Radiation, Evapotranspiration, and Latent Energy Fluxes over Groundwater-Dependent Riparian Cottonwood and Saltcedar Forests. Advances in Meteorology, 2015. 935060.

Eamus, D., Zolfaghar, S., Villalobos-Vega, R., Cleverly, J., and Huete, A. (2015) Groundwater-dependent ecosystems: recent insights from satellite and field-based studies. Hydrology and Earth System Sciences, 19 (10). pp. 4229-4256.

Donohue, R.J., Hume, I.H., Roderick, M.L., McVicar, T.R., Beringer, J., Hutley, L.B., Gallant, J.C., Austin, J.M., Van Gorsel, E., Cleverly, J.R., Meyer, W.S., and Arndt, S.K. (2014) Evaluation of the remote-sensing-based DIFFUSE model for estimating photosynthesis of vegetation. Remote Sensing of Environment, 155. pp. 349-365.

Shi, Hao, Li, Longhui, Eamus, Derek, Cleverly, Jamie, Huete, Alfredo, Beringer, Jason, Yu, Qiang, Van Gorsel, Eva, and Hutley, Lindsay (2014) Intrinsic climate dependency of ecosystem light and water-use-efficiencies across Australian biomes. Environmental Research Letters, 9 (10). 104002.

Chen, Chao, Eamus, Derek, Cleverly, James, Boulain, Nicolas, Cook, Peter, Zhang, Lu, Cheng, Lei, and Yu, Qiang (2014) Modelling vegetation water-use and groundwater recharge as affected by climate variability in an arid-zone Acacia savanna woodland. Journal of Hydrology, 519 (Part A). pp. 1084-1096.

Ma, Xuanlong, Huete, Alfredo, Yu, Qiang, Restrepo-Coupe, Natalia, Beringer, Jason, Hutley, Lindsay B., Kanniah, Kasturi Devi, Cleverly, James, and Eamus, Derek (2014) Parameterization of an ecosystem light-use-efficiency model for predicting savanna GPP using MODIS EVI. Remote Sensing of Environment, 154. pp. 253-271.

Zolfaghar, Sepideh, Villalobos-Vega, Randol, Cleverly, James, Zeppel, Melanie, Rumman, Rizwana, and Eamus, Derek (2014) The influence of depth-to-groundwater on structure and productivity of Eucalyptus woodlands. Australian Journal of Botany, 62 (5). pp. 428-437.

Book Chapter

Able, Kenneth W., Simenstad, Charles A., Strydom, Nadine A., Bradley, Michael, and Sheaves, Marcus (2022) Habitat Use and Connectivity. In: Whitfield, Alan K., Able, Kenneth W., Blaber, Stephen J.M., and Elliott, Michael, (eds.) Fish and Fisheries in Estuaries: A Global Perspective. Wiley-Blackwell, pp. 188-254.

Kingsford, M. J., Syms, C., Srinivasan, M., and Jones, G. P. (2019) Coral reef habitats and their influence on reef assemblages. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: Biology, Environment and Management. CSIRO Publishing, Clayton South, VIC, Australia, pp. 51-62.

Report

Chartrand, K.M., Carter, A.B., Hoffmann, L., and Smith, T. (2022) Progress Report: MARRS Monitoring Trial at Moore Reef – June 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Scott, A.L., Whap, T., Kris, J., Joe, S., Carlisle, M., David, M., Rasheed, M.A., York, P.H., and Carter, A.B. (2022) The role of dugong and turtle grazing in Torres Strait seagrass declines: Exclusion experiments show the role of green turtle and dugong grazing in structuring Torres Strait seagrass meadows. Report. National Environmental Science Programme (NESP), Townsville, QLD, Australia.

Carter, Alex, Coles, Rob, Rasheed, Michael, and Collier, Catherine J. (2021) Seagrass communities of the Great Barrier Reef and their desired state: applications for spatial planning and management. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Lambert, V., Collier, C., Brodie, J., Adams, M.P., Baird, M., Bainbridge, Z., Carter, A., Lewis, S., Rasheed, M., Saunders, M., and O'Brien, K. (2020) Connecting Sediment Load Targets to Ecological Outcomes for Seagrass. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Bishop, M.J., Murray, N.J., Swearer, S., and Keith, D.A. (2020) MT1.2 Muddy shorelines [In: IUCN Global Ecosystem Typology 2.0: descriptive profiles for biomes and ecosystem functional groups]. Report Section. International Union for Conservation of Nature and Natural Resources, Gland, Switzerland.

Conference Item

York, Paul H., Scott, Abigail L., Smith, Timothy M., Davey, Peter A., Carter, Alex B., and Rasheed, Michael A. (2024) Megaherbivory is a major force driving seagrass structure on the Great Barrier Reef. In: ISBW15 & WSC2024 Book of Abstracts. From: ISBW 2024: International Seagrass Biology Workshop, 17-21 June 2024, Naples, Italy.

Scott, Abbi, York, Paul, Macreadie, Peter, and Rasheed, Michael (2021) The role of herbivores as ecosystem engineers in tropical seagrass meadows. In: [Presented at the Australian Marine Sciences Association Conference 2021]. From: Australian Marine Sciences Association Conference 2021: Marine Science in the Anthropocene, 27 June - 2 July 2021, Virtual.

Scott, Abigail L., York, Paul H., and Rasheed, Michael A. (2018) Keep off the grass: Using herbivore exclusion cages to understand herbivory in seagrass meadows. In: [Presented at the World Seagrass Conference 2018]. From: World Seagrass Conference 2018, 11-17 June 2018, Singapore.

Bartelet, Henry A. (2017) Exploring the effectiveness of policies to reverse rapid coral reef degradation in the Philippines. In: Proceedings of the 35th International Conference of the System Dynamics Society. From: 35th International Conference of the System Dynamics Society, 16-20 July 2017, Cambridge, MA, USA.

Scott, Abbi, Rasheed, Michael, York, Paul, and Macreadie, Peter (2017) How can herbivores modify ecosystem service delivery in seagrass meadows? In: [Presented at the Australian Marine Sciences Association Conference 2017]. From: Australian Marine Sciences Association Conference 2017, 2-6 July 2019, Darwin, NT, Australia.

York, Paul, Coles, Rob, Sankey, Tonia, Omundsen, Sarah, Rasheed, Michael, and Sheaves, Marcus (2016) Assessing the ecological and economic impacts of a drastic decline in tropical seagrass meadows on fish and prawn assemblages. In: 12th International Seagrass Biology Workshop Programme. pp. 63-64. From: ISBW12: 12th International Seagrass Biology Workshop, 16-21 October 2016, Nant Gwrtheyrn, Wales.

Thesis

Lutzenkirchen, Lucas Leo (2024) Upscaling ecosystem studies on coral reefs. Masters (Research) thesis, James Cook University.

Blandford, Makeely Isabel (2023) Effects of habitat fragmentation on coral-associated fish assemblages. PhD thesis, James Cook University.

Ryan, Natasha (2023) Effects of various grazing strategies on the shelter and forage site selection of rufous bettongs (Aepyprymnus rufescens). Masters (Research) thesis, James Cook University.

Panero, Marta (2022) Gorgonian spatial distributions, ecological interactions with fish assemblages and responses to their decline in health. Masters (Research) thesis, James Cook University.

Greenfield, Melinda Jane (2022) Interactions among fungi, ants, and the ant-plant Myrmecodia beccarii. PhD thesis, James Cook University.

Mihalitsis, Michalis (2022) The functional ecology of fish predation on coral reefs. PhD thesis, James Cook University.

Tebbett, Sterling Bryn (2022) The functioning of future coral reefs: fishes, sediments and productivity. PhD thesis, James Cook University.

Sambrook, Katie (2021) Beyond the reef: the influence of seascape structure on the composition and function of tropical fish communities. PhD thesis, James Cook University.

Herrera Acosta, César Augusto (2021) Biodiversity beyond species census: assessing organisms' traits and functional attributes using computer vision. PhD thesis, James Cook University.

Crook, Kevin Alexander (2020) Assessing the functional roles of rays in coastal sandflats. PhD thesis, James Cook University.

Tol, Samantha (2020) Relative importance of different seagrass re-establishment strategies in tropical Queensland, Australia. PhD thesis, James Cook University.

Streit, Robert Paul (2020) Space use by fishes on coral reefs: establishment, fidelity and reef resilience. PhD thesis, James Cook University.

Tsai, Cheng-Han (2020) Variation in relative species abundance of reef fishes: drivers and ecosystem impacts. PhD thesis, James Cook University.

Scott, Abigail Lucy (2020) The role of herbivores as ecosystem engineers in Great Barrier Reef seagrass meadows. PhD thesis, James Cook University.