A

Able, Kenneth W., Simenstad, Charles A., Strydom, Nadine A., Bradley, Michael, and Sheaves, Marcus (2022) Habitat Use and Connectivity. In: Whitfield, Alan K., Able, Kenneth W., Blaber, Stephen J.M., and Elliott, Michael, (eds.) Fish and Fisheries in Estuaries: A Global Perspective. Wiley-Blackwell, pp. 188-254.

Adame, Maria, Waltham, Nathan, Iram, Naima, Farahani, Bahareh Shahrabi, Salinas, Cristian, Buford, Michelle, and Ronan, Mike (2021) Denitrification within the sediments and epiphyton of tropical macrophyte stands. Inland Waters, 11. 3. pp. 257-266.

Addicott, Eda, Laurance, Susan G.W., Bannink, Peter, and Thompson, Simon (2020) The intertidal plant communities in north-eastern Australia, their carbon stores and vulnerability to extreme climate events. Aquatic Conservation: marine and freshwater ecosystems, 30 (12). pp. 2298-2312.

Araújo, Felipe De Carvalho, Tng, David Yue Phin, Apgaua, Deborah Mattos Guimaraes, Morel, Jean Daniel, Pereira, Diego Gualberto Sales, Santos, Paola Ferreira, and dos Santos, Rubens Manoel (2019) Flooding regime drives tree community structure in Neotropical dry forests. Journal of Vegetation Science, 30 (6). pp. 1195-1205.

Anderson, Kristen D., Cantin, Neal E., Heron, Scott F., Lough, Janice M., and Pratchett, Morgan S. (2018) Temporal and taxonomic contrasts in coral growth at Davies Reef, central Great Barrier Reef, Australia. Coral Reefs, 37 (2). pp. 409-421.

Aschenbroich, Adélaïde, Michaud, Emma, Stieglitz, Thomas, Fromard, Francois, Gardel, Antoine, Tavares, Marcos, and Thouzeau, Gérard (2016) Brachyuran crab community structure and associated sediment reworking activities in pioneer and young mangroves of French Guiana, South America. Estuarine, Coastal and Shelf Science, 182 (Part A). pp. 60-71.

B

Blandford, Makeely Isabel (2023) Effects of habitat fragmentation on coral-associated fish assemblages. PhD thesis, James Cook University.

Bloom, Elias H., Illán, Javier Gutiérrez, Brousil, Matthew R., Reganold, John P., Northfield, Tobin D., and Crowder, David W. (2023) Long-term organic farming and floral diversity promotes stability of bee communities in agroecosystems. Functional Ecology, 37 (11). pp. 2761-2976.

Beringer, Jason, Moore, Caitlin E., Cleverly, Jamie, Campbell, David I., Cleugh, Helen, De Kauwe, Martin G., Kirschbaum, Miko U.F., Griebel, Anne, Grover, Sam, Huete, Alfredo, Hutley, Lindsay B., Laubach, Johannes, Van Niel, Tom, Arndt, Stefan K., Bennett, Alison C., Cernusak, Lucas A., Eamus, Derek, Ewenz, Cacilia M., Goodrich, Jordan P., Jiang, Mingkai, Hinko-Najera, Nina, Isaac, Peter, Hobeichi, Sanaa, Knauer, Jürgen, Koerber, Georgia R., Liddell, Michael, Ma, Xuanlong, Macfarlane, Craig, Mchugh, Ian D., Medlyn, Belinda E., Meyer, Wayne S., Norton, Alexander J., Owens, Jyoteshna, Pitman, Andy, Pendall, Elise, Prober, Suzanne M., Ray, Ram L., Restrepo-Coupe, Natalia, Rifai, Sami W., Rowlings, David, Schipper, Louis, Silberstein, Richard P., Teckentrup, Lina, Thompson, Sally E., Ukkola, Anna M., Wall, Aaron, Wang, Ying Ping, Wardlaw, Tim J., and Woodgate, William (2022) Bridge to the future: important lessons from 20 years of ecosystem observations made by the OzFlux network. Global Change Biology, 28 (11). pp. 3489-3514.

Bao, Shanning, Wutzler, Thomas, Koirala, Sujan, Cuntz, Matthias, Ibrom, Andreas, Besnard, Simon, Walther, Sophia, Sigut, Ladislav, Moreno, Alvaro, Weber, Ulrich, Wohlfahrt, Georg, Cleverly, Jamie, Migliavacca, Mirco, Woodgate, William, Merbold, Lutz, Veenendaal, Elmar, and Carvalhais, Nuno (2022) Environment-sensitivity functions for gross primary productivity in light use efficiency models. Agricultural and Forest Meteorology, 312. 108708.

Biggs, Reinette, Clements, Hayley S., Cumming, Graeme S., Cundill, Georgina, de Vos, Alta, Hamann, Maike, Luvuno, Linda, Roux, Dirk J., Selomane, Odirilwe, Blanchard, Ryan, Cockburn, Jessica, Dziba, Luthando, Esler, Karen J., Fabricius, Christo, Henriksson, Rebecka, Kotschy, Karen, Lindborg, Regina, Masterson, Vanessa A., Nel, Jeanne L., O’Farrell, Patrick, Palmer, Carolyn G., Pereira, Laura, Pollard, Sharon, Preiser, Rika, Scholes, Robert J., Shackleton, Charlie, Shackleton, Sheona, Sitas, Nadia, Slingsby, Jasper A., Spierenburg, Marja, Tengö, Maria, and Reyers, Belinda (2022) Social-ecological change: insights from the Southern African Program on Ecosystem Change and Society. Ecosystems and People, 18 (1). pp. 447-468.

Brown, Christopher J., Adame, Maria F., Buelow, Christina A., Frassl, Marieke A., Lee, Shing Yip, Mackey, Brendan, McClure, Eva C., Pearson, Ryan M., Rajkaran, Anusha, Rayner, Thomas S., Sievers, Michael, Saint Ange, Chantal A., Sousa, Ana, Tulloch, Vivitskaia J.D., Turschwell, Mischa P., and Connolly, Rod M. (2021) Opportunities for improving recognition of coastal wetlands in global ecosystem assessment frameworks. Ecological Indicators, 126. 107694.

Bishop, M.J., Murray, N.J., Swearer, S., and Keith, D.A. (2020) MT1.2 Muddy shorelines [In: IUCN Global Ecosystem Typology 2.0: descriptive profiles for biomes and ecosystem functional groups]. Report Section. International Union for Conservation of Nature and Natural Resources, Gland, Switzerland.

Brandl, Simon J., Tornabene, Luke, Goatley, Christopher H.R., Casey, Jordan M., Morais, Renato A., Côté, Isabelle M., Baldwin, Carole C., Parravicini, Valeriano, Schiettekatte, Nina M.D., and Bellwood, David R. (2019) Demographic dynamics of the smallest marine vertebrates fuel coral reef ecosystem functioning. Science, 364 (6446). pp. 1189-1192.

Bode, Michael, Leis, Jeffrey M., Mason, Luciano B., Williamson, David H., Harrison, Hugo B., Choukroun, Severine, and Jones, Geoffrey P. (2019) Successful validation of a larval dispersal model using genetic parentage data. PLoS Biology, 17 (7). e3000380.

Bierwagen, Stacy L., Pethybridge, Heidi, Heupel, Michelle R., Chin, Andrew, and Simpfendorfer, Colin A. (2019) Trophic niches determined from fatty acid profiles of sympatric coral reef mesopredators. Marine Ecology Progress Series, 632. pp. 159-174.

Bellwood, David R., Streit, Robert P., Brandl, Simon J., and Tebbett, Sterling B. (2019) The meaning of the term 'function' in ecology: a coral reef perspective. Functional Ecology, 33 (6). pp. 948-961.

Bloom, Elias H., Northfield, Tobin D., and Crowder, David W. (2019) A novel application of the Price equation reveals that landscape diversity promotes the response of bees to regionally rare plant species. Ecology Letters, 22 (12). pp. 2103-2110.

Bloomfield, Keith J., Prentice, I. Colin, Cernusak, Lucas A., Eamus, Derek, Medlyn, Belinda E., Rumman, Rizwana, Wright, Ian J., Boer, Matthias M., Cale, Peter, Cleverly, James, Egerton, John J.G., Ellsworth, David S., Evans, Bradley J., Hayes, Lucy S., Hutchinson, Michael F., Liddell, Michael J., Macfarlane, Craig, Meyer, Wayne S., Togashi, Henrique F., Wardlaw, Tim, Zhu, Lingling, and Atkin, Owen K. (2019) The validity of optimal leaf traits modelled on environmental conditions. New Phytologist, 221 (3). pp. 1409-1423.

Bland, Lucie M., Rowland, Jessica A., Regan, Tracey J., Keith, David A., Murray, Nicholas J., Lester, Rebecca E., Linn, Matt, Rodriguez, Jon Paul, and Nicholson, Emily (2018) Developing a standardized definition of ecosystem collapse for risk assessment. Frontiers in Ecology and the Environment, 16 (1). pp. 29-36.

Buelow, Christina A., Baker, Ronald, Reside, April E., and Sheaves, Marcus (2018) Nutrient subsidy indicators predict the presence of an avian mobile-link species. Ecological Indicators, 89. pp. 507-515.

Bierwagen, Stacy L., Emslie, Michael J., Heupel, Michelle R., Chin, Andrew, and Simpfendorfer, Colin A. (2018) Reef-scale variability in fish and coral assemblages on the central Great Barrier Reef. Marine Biology, 165. 144.

Bierwagen, Stacy L., Heupel, Michelle R., Chin, Andrew, and Simpfendorfer, Colin A. (2018) Trophodynamics as a tool for understanding coral reef ecosystems. Frontiers in Marine Science, 5.

Bloomfield, Keith J., Cernusak, Lucas, Eamus, Derek, Ellsworth, David S., Prentice, I. Colin, Wright, Ian J., Boer, Matthias M., Bradford, Matt G., Cale, Peter, Cleverly, Jamie, Egerton, John J.G., Evans, Bradley J., Hayes, Lucy S., Hutchinson, Michael F., Liddell, Michael, Macfarlane, Craig, Meyer, Wayne S., Prober, Suzanne M., Togashi, Henrique F., Wardlaw, Tim, Zhu, Lingling, and Atkin, Owen K. (2018) A continental‐scale assessment of variability in leaf traits: within species, across sites and between seasons. Functional Ecology, 32 (6). pp. 1492-1506.

Barraza, Verónica, Restrepo-Coupe, Natalia, Huete, Alfredo, Grings, Francisco, Beringer, Jason, Cleverly, James, and Eamus, Derek (2017) Estimation of latent heat flux over savannah vegetation across the North Australian Tropical Transect from multiple sensors and global meteorological data. Agricultural and Forest Meteorology, 232. pp. 689-703.

Bartelet, Henry A. (2017) Exploring the effectiveness of policies to reverse rapid coral reef degradation in the Philippines. In: Proceedings of the 35th International Conference of the System Dynamics Society. From: 35th International Conference of the System Dynamics Society, 16-20 July 2017, Cambridge, MA, USA.

Brandl, Simon J., and Bellwood, David R. (2016) Microtopographic refuges shape consumer‑producer dynamics by mediating consumer functional diversity. Oecologia, 182 (1). pp. 203-217.

Beringer, Jason, Hutley, Lindsay B., Mchugh, Ian, Arndt, Stefan K., Campbell, David, Cleugh, Helen A., Cleverly, James, Resco de Dios, Víctor, Eamus, Derek, Evans, Bradley, Ewenz, Cacilia, Grace, Peter, Griebel, Anne, Haverd, Vanessa, Hinko-Najera, Nina, Huete, Alfredo, Isaac, Peter, Kanniah, Kasturi, Leuning, Ray, Liddell, Michael J., Macfarlane, Craig, Meyer, Wayne, Moore, Caitlin, Pendall, Elise, Phillips, Alison, Phillips, Rebecca L., Prober, Suzanne M., Restrepo-Coupe, Natalia, Rutledge, Susanna, Schroder, Ivan, Silberstein, Richard, Southall, Patricia, Yee, Mei Sun, Tapper, Nigel J., Van Gorsel, Eva, Vote, Camilla, Walker, Jeff, and Wardlaw, Tim (2016) An introduction to the Australian and New Zealand flux tower network – OzFlux. Biogeosciences, 13. pp. 5895-5916.

C

Cumming, Graeme S., and Bellwood, David R. (2023) Broad-scale analysis of fish community data suggests critical need to support regional connectivity of coral reefs. Ecological Applications, 33 (4). e2849.

Cartwright, Paula J., Browne, Nicola K., Belton, David, Parnum, Iain, O'leary, Michael, Valckenaere, Jurgen, Fearns, Peter, and Lowe, Ryan (2023) Long-term spatial variations in turbidity and temperature provide new insights into coral-algal states on extreme/marginal reefs. Coral Reefs, 42. pp. 859-872.

Cumming, Graeme S., Adamska, Maja, Barnes, Michele L., Barnett, Jon, Bellwood, David R., Cinner, Joshua E., Cohen, Philippa J., Donelson, Jennifer M., Fabricius, Katharina, Grafton, R. Quentin, Grech, Alana, Gurney, Georgina G., Hoegh-Guldberg, Ove, Hoey, Andrew S., Hoogenboom, Mia O., Lau, Jacqueline, Lovelock, Catherine E., Lowe, Ryan, Miller, David J., Morrison, Tiffany H., Mumby, Peter J., Nakata, Martin, Pandolfi, John M., Peterson, Garry D., Pratchett, Morgan S., Ravasi, Timothy, Riginos, Cynthia, Rummer, Jodie L., Schaffelke, Britta, Wernberg, Thomas, and Wilson, Shaun K. (2023) Research priorities for the sustainability of coral-rich western Pacific seascapes. Regional Environmental Change, 23 (2). 66.

Cao, Yanping, Xie, Zunyi, Woodgate, William, Ma, Xuanlong, Cleverly, Jamie, Pang, Yingjun, Qin, Fen, and Huete, Alfredo (2022) Ecohydrological decoupling of water storage and vegetation attributed to China’s large-scale ecological restoration programs. Journal of Hydrology, 615. 128651.

Cranko Page, Jon, De Kauwe, Martin G., Abramowitz, Gab, Cleverly, Jamie, Hinko-Najera, Nina, Hovenden, Mark J., Liu, Yao, Pitman, Andy J., and Ogle, Kiona (2022) Examining the role of environmental memory in the predictability of carbon and water fluxes across Australian ecosystems. Biogeosciences, 19. pp. 1913-1932.

Chartrand, K.M., Carter, A.B., Hoffmann, L., and Smith, T. (2022) Progress Report: MARRS Monitoring Trial at Moore Reef – June 2022. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Canning, Adam D., and Waltham, Nathan J. (2021) Ecological impact assessment of climate change and habitat loss on wetland vertebrate assemblages of the Great Barrier Reef catchment and the influence of survey bias. Ecology and Evolution, 11 (10). pp. 5244-5254.

Cartwright, Paula J., Fearns, Peter R.C.S., Branson, Paul, Cuttler, Michael V.W., O'Leary, Michael, Browne, Nicola K., and Lowe, Ryan J. (2021) Identifying Metocean Drivers of Turbidity Using 18 Years of MODIS Satellite Data: Implications for Marine Ecosystems under Climate Change. Remote Sensing, 13 (18). 3616.

Campanyà-Llovet, Neus, Le Guitton, Marie, and Watson, Sue-Ann (2021) Long-term and seasonal changes in the life-history biology of the abyssal holothurian Pseudostichopus aemulatus from the Porcupine Abyssal Plain (North-East Atlantic). Deep-sea Research Part I: Oceanographic Research Papers, 174. 103537.

Carter, Alex, Coles, Rob, Rasheed, Michael, and Collier, Catherine J. (2021) Seagrass communities of the Great Barrier Reef and their desired state: applications for spatial planning and management. Report. Reef and Rainforest Research Centre, Cairns, QLD, Australia.

Canning, Adam D., and Death, Russell G. (2021) The influence of nutrient enrichment on riverine food web function and stability. Ecology and Evolution, 11 (4). pp. 942-954.

Crook, Kevin Alexander (2020) Assessing the functional roles of rays in coastal sandflats. PhD thesis, James Cook University.

Cardoso, Pedro, Barton, Philip S., Birkhofer, Klaus, Chichorro, Filipe, Deacon, Charl, Fartmann, Thomas, Fukushima, Caroline S., Gaigher, René, Habel, Jan C., Hallmann, Caspar A., Hill, Matthew J., Hochkirch, Axel, Kwak, Mackenzie L., Mammola, Stefano, Ari Noriega, Jorge, Orfinger, Alexander B., Pedraza, Fernando, Pryke, James S., Roque, Fabio O., Settele, Josef, Simaika, John P., Stork, Nigel E., Suhling, Frank, Vorster, Carlien, and Samways, Michael J. (2020) Scientists' warning to humanity on insect extinctions. Biological Conservation, 242. 108426.

Caron, Alexandra G.M., Thomas, Colette R., Berry, Kathryn L.E., Motti, Cherie A., Ariel, Ellen, and Brodie, Jon E. (2018) Validation of an optimised protocol for quantification of microplastics in heterogenous samples: a case study using green turtle chyme. MethodsX, 5. pp. 812-823.

Connolly, Sean R., Hughes, Terry P., and Bellwood, David R. (2017) A unified model explains commonness and rarity on coral reefs. Ecology Letters, 20 (4). pp. 477-486.

Chen, Chao, Cleverly, James, Zhang, Lu, Yu, Qiang, and Eamus, Derek (2016) Modelling Seasonal and Inter-annual Variations in Carbon and Water Fluxes in an Arid-Zone Acacia Savanna Woodland, 1981–2012. Ecosystems, 19. pp. 625-644.

Cleverly, Jamie, Eamus, Derek, Van Gorsel, Eva, Chen, Chao, Rumman, Rizwana, Luo, Qunying, Coupe, Natalia Restrepo, Li, Longhui, Kljun, Natascha, Faux, Ralph, Yu, Qiang, and Huete, Alfredo (2016) Productivity and evapotranspiration of two contrasting semiarid ecosystems following the 2011 global carbon land sink anomaly. Agricultural and Forest Meteorology, 220. pp. 151-159.

Cleverly, Jamie, Eamus, Derek, Restrepo Coupe, Natalia, Chen, Chao, Maes, Wouter, Li, Longhui, Faux, Ralph, Santini, Nadia S., Rumman, Rizwana, Yu, Qiang, and Huete, Alfredo (2016) Soil moisture controls on phenology and productivity in a semi-arid critical zone. Science of the Total Environment, 568. pp. 1227-1237.

Cleverly, Jamie, Eamus, Derek, Luo, Qunying, Restrepo Coupe, Natalia, Kljun, Natascha, Ma, Xuanlong, Ewenz, Cacilia, Li, Longhui, Yu, Qiang, and Huete, Alfredo (2016) The importance of interacting climate modes on Australia’s contribution to global carbon cycle extremes. Scientific Reports, 6. 23113.

Cleverly, James, Thibault, James R., Teet, Stephen B., Tashjian, Paul, Hipps, Lawrence E., Dahm, Clifford N., and Eamus, Derek (2015) Flooding Regime Impacts on Radiation, Evapotranspiration, and Latent Energy Fluxes over Groundwater-Dependent Riparian Cottonwood and Saltcedar Forests. Advances in Meteorology, 2015. 935060.

D

Dubuc, Alexia, Collins, Geoffrey, Coleman, Laura, Waltham, Nathan J., Rummer, Jodie L., and Sheaves, Marcus (2021) Association between physiological performance and short temporal changes in habitat utilisation modulated by environmental factors. Marine Environmental Research, 170. 105448.

Dee, Shannon, Cuttler, Michael, Cartwright, Paula, Mcilwain, Jennifer, and Browne, Nicola (2021) Encrusters maintain stable carbonate production despite temperature anomalies among two inshore island reefs of the Pilbara, Western Australia. Marine Environmental Research, 169. 105386.

Denis, Vianney, Ribas-Deulofeu, Lauriane, Sturaro, Nicolas, Kuo, Chao-Yang, and Chen, Chaolun Allen (2017) A functional approach to the structural complexity of coral assemblages based on colony morphological features. Scientific Reports, 7. 9849.

D'agata, Stéphanie, Vigliola, Laurent, Graham, Nicholas A.J., Wantiez, Laurent, Parravicini, Valeriano, Villéger, Sébastien, Mou-Tham, Gerard, Frolla, Philippe, Friedlander, Alan M., Kulbicki, Michel, and Mouillot, David (2016) Unexpected high vulnerability of functions in wilderness areas: evidence from coral reef fishes. Proceedings of the Royal Society of London Series B, Biological Sciences, 283 (1844). 20160128. pp. 1-10.

E

Engert, Jayden E., Vogado, Nara O., Freebody, Kylie, Byrne, Basil, Murphy, Judy, Sheather, Gaylene, Snodgrass, Peter, Nugent, Leah, Lloyd, Dave, and Laurance, Susan G.W. (2020) Functional trait representation differs between restoration plantings and mature tropical rainforest. Forest Ecology and Management, 473. 118304.

Epstein, Hannah E., and Kingsford, Michael J. (2019) Are soft coral habitats unfavourable? A closer look at the association between reef fishes and their habitat. Environmental Biology of Fishes, 102. pp. 479-497.

Eamus, Derek, Huete, Alfredo, Cleverly, James, Nolan, Rachael H., Ma, Xuanlong, Tarin, Tonantzin, and Santini, Nadia S. (2016) Mulga, a major tropical dry open forest of Australia: recent insights to carbon and water fluxes. Environmental Research Letters, 11 (12). 125011.

Eamus, D., Zolfaghar, S., Villalobos-Vega, R., Cleverly, J., and Huete, A. (2015) Groundwater-dependent ecosystems: recent insights from satellite and field-based studies. Hydrology and Earth System Sciences, 19 (10). pp. 4229-4256.

F

Fauset, Sophie, Gloor, Manuel, Fyllas, Nikolaos M., Phillips, Oliver L., Asner, Gregory P., Baker, Timothy R., Bentley, Lisa Patrick, Brienen, Roel J.W., Christoffersen, Bradley O., del Aguila-Pasquel, Jhon, Doughty, Christopher E., Feldpausch, Ted R., Galbraith, David R., Goodman, Rosa C., Girardin, Cecile A.J., Honorio Coronado, Euridice N., Monteagudo, Abel, Salinas, Norma, Shenkin, Alexander, Silva-Espejo, Javier E., Van Der Heijden, Geertje, Vasquez, Rodolfo, Alvarez-Davila, Esteban, Arroyo, Luzmila, Barroso, Jorcely G., Brown, Foster, Castro, Wendeson, Cornejo Valverde, Fernando, Cardozo, Nallarett Davila, Di Fiore, Anthony, Erwin, Terry, Huamantupa-Chuquimaco, Isau, Nunez Vargas, Percy, Neill, David, Pallqui Camacho, Nadir, Parada Gutierrez, Alexander, Peacock, Julie, Pitman, Nigel, Prieto, Adriana, Restrepo, Zorayda, Rudas, Agustin, Quesada, Carlos A., Silveira, Marcos, Stropp, Juliana, Terborgh, John, Vieira, Simone A., and Malhi, Yadvinder (2019) Individual-based modeling of Amazon forests suggests that climate controls productivity while traits control demography. Frontiers in Earth Science, 7. 83.

Filipe, João C., Jorge, Andreia, Eren, Özkan, Sotes, Gastón, Hierro, José, and Montesinos, Daniel (2016) Invasive and non-invasive congeneric centaurea (Asteraceae) show contrasting patterns of herbivory by snails. Plant Ecology and Evolution, 149 (2). pp. 228-232.

Ferrari, Renata, Bryson, Mitch, Bridge, Tom, Hustache, Julie, Williams, Stefan B., Byrne, Maria, and Figueira, Will (2016) Quantifying the response of structural complexity and community composition to environmental change in marine communities. Global Change Biology, 22 (5). pp. 1965-1975.

G

Greenfield, Melinda Jane (2022) Interactions among fungi, ants, and the ant-plant Myrmecodia beccarii. PhD thesis, James Cook University.

Greenfield, Melinda J., Lach, Lori, Congdon, Brad C., Anslan, Sten, Tedersoo, Leho, Field, Matt, and Abell, Sandra E. (2021) Consistent patterns of fungal communities within ant-plants across a large geographic range strongly suggest a multipartite mutualism. Mycological Progress, 20. pp. 681-699.

Gonzalez-Pestana, Adriana, Maguiño, Rossana, Mendoza, Alejandra, Kelez, Shaleyla, and Ramírez-Macías, Dení (2020) Distribution of whale shark (Rhincodon typus) off northern Peru based on habitat suitability. Aquatic Conservation: Marine and Freshwater Ecosystems, 30 (7). pp. 1325-1336.

Georgeson, L., Rigby, C. L., Emery, T. J., Fuller, M., Hartog, J., Williams, A. J., Hobday, A. J., Duffy, C. A. J., Simpfendorfer, C. A., Okuda, T., Stobutzki, I. C., and Nicol, S. J. (2020) Ecological risks of demersal fishing on deepwater chondrichthyan populations in the Southern Indian and South Pacific Oceans. ICES Journal of Marine Science, 77 (5). pp. 1711-1727.

Gilby, Ben L., Weinstein, Michael P., Baker, Ronald, Cebrian, Just, Alford, Scott B., Chelsky, Ariella, Colombano, Denise, Connolly, Rod M., Currin, Carolyn A., Feller, Ilka C., Frank, Alyssa, Goeke, Janelle A., Goodridge Gaines, Lucy A., Hardcastle, Felicity E., Henderson, Christopher J., Martin, Charles W., McDonald, Ashley E., Morrison, Blair H., Olds, Andrew D., Rehage, Jennifer S., Waltham, Nathan J., and Ziegler, Shelby L. (2020) Human actions alter tidal marsh seascapes and the provision of ecosystem services. Estuaries and Coasts.

George, Anita Mary, Brodie, Jon, Daniell, James, Capper, Angela, and Jonker, Michelle (2018) Can sponge morphologies act as environmental proxies to biophysical factors in the Great Barrier Reef, Australia? Ecological Indicators, 93. pp. 1152-1162.

Griebel, Anne, Bennett, Lauren T., Metzen, Daniel, Cleverly, Jamie, Burba, George, and Arndt, Stefan K. (2016) Effects of inhomogeneities within the flux footprint on the interpretation of seasonal, annual, and interannual ecosystem carbon exchange. Agricultural and Forest Meteorology, 221. pp. 50-60.

H

He, Jie, Feng, Puyu, Wang, Bin, Zhuang, Wei, Zhang, Yongqiang, Liu, De Li, Cleverly, Jamie, Huete, Alfredo, and Yu, Qiang (2022) Centennial Annual Rainfall Pattern Changes Show an Increasing Trend with Higher Variation over Northern Australia. Journal of Hydrometeorology, 23 (8). pp. 1333-1349.

Herrera Acosta, César Augusto (2021) Biodiversity beyond species census: assessing organisms' traits and functional attributes using computer vision. PhD thesis, James Cook University.

Henderson, Christopher J., Gilby, Ben L., Schlacher, Thomas A., Connolly, Rod M., Sheaves, Marcus, Flint, Nicole, Borland, Hayden P., and Olds, Andrew D. (2019) Contrasting effects of mangroves and armoured shorelines on fish assemblages in tropical estuarine seascapes. ICES Journal of Marine Science, 76 (4). pp. 1052-1061.

Hemingson, Christopher R., and Bellwood, David R. (2018) Biogeographic patterns in major marine realms: function not taxonomy unites fish assemblages in reef, seagrass and mangrove systems. Ecography, 41 (1). pp. 174-182.

Hempson, Tessa N., Graham, Nicholas A.J., MacNeil, M. Aaron, Bodin, Nathalie, and Wilson, Shaun K. (2018) Regime shifts shorten food chains for mesopredators with potential sublethal effects. Functional Ecology, 32 (3). pp. 820-830.

Hata, Tom, Madin, Joshua S., Cumbo, Vivian R., Denny, Mark, Figueiredo, Joana, Harii, Saki, Thomas, Christopher J., and Baird, Andrew H. (2017) Coral larvae are poor swimmers and require fine-scale reef structure to settle. Scientific Reports, 7 (1). 2249.

Haverd, V., Smith, B., Raupach, M., Briggs, P., Nieradzik, L., Beringer, J., Hutley, L., Trudinger, C.M., and Cleverly, J. (2016) Coupling carbon allocation with leaf and root phenology predicts tree–grass partitioning along a savanna rainfall gradient. Biogeosciences, 13. pp. 761-779.

I

Isaac, Peter, Cleverly, James, McHugh, Ian, van Gorsel, Eva, Ewenz, Cacilia, and Beringer, Jason (2017) OzFlux data: network integration from collection to curation. Biogeosciences, 14. pp. 2903-2928.

J

Jackson, Micha V., Fuller, Richard A., Gan, Xiaojing, Li, Jing, Mao, Dehua, Melville, David S., Murray, Nicholas, Wang, Zongming, and Choi, Chi-Yeung (2021) Dual threat of tidal flat loss and invasive Spartina alterniflora endanger important shorebird habitat in coastal mainland China. Journal of Environmental Management, 278 (Part 2). 111549.

Juhel, Jean-Baptiste, Vigliola, Laurent, Wantiez, Laurent, Letessier, Tom B., Meeuwig, Jessica J., and Mouillot, David (2019) Isolation and no-entry marine reserves mitigate anthropogenic impacts on grey reef shark behavior. Scientific Reports, 9. 2897.

Jones, Lucas A., Kimball, John S., Reichle, Rolf H., Madani, Nima, Glassy, Joe, Ardizzone, Joe V., Colliander, Andreas, Cleverly, James, Desai, Ankur R., Eamus, Derek, Euskirchen, Eugenie S., Hutley, Lindsay, Macfarlane, Craig, and Scott, Russell L. (2017) The SMAP Level 4 Carbon Product for Monitoring Ecosystem Land–Atmosphere CO2 Exchange. IEEE Transactions on Geoscience and Remote Sensing, 55 (11). pp. 6517-6532.

K

Kimball, Matthew, Connolly, Rod M., Alford, Scott B., Colombano, Denise D., James, W. Ryan, Kenworthy, Matthew D., Norris, Gregory S., Ollerhead, Jeff, Ramsden, Sarah, Rehage, Jennifer S., Sparks, Eric L., Waltham, Nathan J., Worthington, Thomas A., and Taylor, Matthew D. (2021) Novel applications of technology for advancing tidal marsh ecology. Estuaries and Coasts, 44. pp. 1568-1578.

Kingsford, M. J., Syms, C., Srinivasan, M., and Jones, G. P. (2019) Coral reef habitats and their influence on reef assemblages. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: Biology, Environment and Management. CSIRO Publishing, Clayton South, VIC, Australia, pp. 51-62.

Kennedy, Emma V., Ordoñez, Alexandra, Lewis, Bonnie E., and Diaz-Pulido, Guillermo (2017) Comparison of recruitment tile materials for monitoring coralline algae responses to a changing climate. Marine Ecology - Progress Series, 569. pp. 129-144.

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Tien, Huynh Van, Tuan Anh, Nguyen, Tan Phong, Nguyen, and Minh Nhut, Mai Le (2021) Ecological Engineering and Restoration of Eroded Muddy Coasts in South East Asia: Knowledge Gaps and Recommendations. Sustainability, 13 (3). 1248.

Tol, Samantha J., Jarvis, Jessie C., York, Paul H., Congdon, Bradley C., and Coles, Robert G. (2021) Mutualistic relationships in marine angiosperms: enhanced germination of seeds by mega-herbivores. Biotropica, 53 (6). pp. 1535-1545.

Trebs, Ivonne, Mallick, Kaniska, Bhattarai, Nishan, Sulis, Mauro, Cleverly, Jamie, Woodgate, William, Silberstein, Richard, Hinko-Najera, Nina, Beringer, Jason, Meyer, Wayne S., Su, Zhongbo, and Boulet, Gilles (2021) The role of aerodynamic resistance in thermal remote sensing-based evapotranspiration models. Remote Sensing of Environment, 264. 112602.

Tebbett, Sterling B., Streit, Robert P., and Bellwood, David R. (2020) A 3D perspective on sediment accumulation in algal turfs: implications of coral reef flattening. Journal of Ecology, 108 (1). pp. 70-80.

Tarin, Tonantzin, Nolan, Rachael H., Eamus, Derek, and Cleverly, James (2020) Carbon and water fluxes in two adjacent Australian semi-arid ecosystems. Agricultural and Forest Meteorology, 281. 107853.

Tebbett, Sterling B., Hoey, Andrew S., Depczynski, Martial, Wismer, Sharon, and Bellwood, David R. (2020) Macroalgae removal on coral reefs: realised ecosystem functions transcend biogeographic locations. Coral Reefs, 39 (1). pp. 203-214.

Tol, Samantha (2020) Relative importance of different seagrass re-establishment strategies in tropical Queensland, Australia. PhD thesis, James Cook University.

Tsai, Cheng-Han (2020) Variation in relative species abundance of reef fishes: drivers and ecosystem impacts. PhD thesis, James Cook University.

Tarin, Tonantzin, Nolan, Rachael H., Medlyn, Belinda E., Cleverly, James, and Eamus, Derek (2020) Water‐use efficiency in a semi‐arid woodland with high rainfall variability. Global Change Biology, 26 (2). pp. 496-508.

Torres-Pulliza, Damaris, Dornelas, Maria A., Pizarro, Oscar, Bewley, Michael, Blowes, Shane A., Boutros, Nader, Brambilla, Viviana, Chase, Tory J., Frank, Grace, Friedman, Ariell, Hoogenboom, Mia O., Williams, Stefan, Zawada, Kyle J. A., and Madin, Joshua S. (2020) A geometric basis for surface habitat complexity and biodiversity. Nature Ecology & Evolution, 4. pp. 1495-1501.

Tebbett, Sterling B., and Bellwood, David R. (2019) Algal turf sediments on coral reefs: what's known and what's next. Marine Pollution Bulletin, 149. 110542.

Tebbett, Sterling B., and Bellwood, David R. (2018) Functional links on coral reefs: urchins and triggerfishes, a cautionary tale. Marine Environmental Research, 141. pp. 255-263.

Togashi, Henrique Fürstenau, Atkin, Owen K., Bloomfield, Keith J., Bradford, Matt, Cao, Kunfang, Dong, Ning, Evans, Bradley J., Fan, Zexin, Harrison, Sandy P., Hua, Zhu, Liddell, Michael J., Lloyd, Jon, Ni, Jian, Wang, Han, Weerasinghe, Lasantha K., and Prentice, Iain Colin (2018) Functional trait variation related to gap dynamics in tropical moist forests: a vegetation modelling perspective. Perspectives in Plant Ecology Evolution and Systematics, 35. pp. 52-64.

Tonin, Alan M., Pozo, Jesús, Monroy, Silvia, Basaguren, Ana, Pérez, Javier, Gonçalves, José F., Pearson, Richard, Cardinale, Bradley J., and Boyero, Luz (2018) Interactions between large and small detritivores influence how biodiversity impacts litter decomposition. Journal of Animal Ecology, 87 (5). pp. 1465-1474.

Thibault, James R., Cleverly, James R., and Dahm, Clifford N. (2017) Long-term Water Table Monitoring of Rio Grande Riparian Ecosystems for Restoration Potential Amid Hydroclimatic Challenges. Environmental Management, 60. pp. 1101-1115.

V

Valente-Neto, Francisco, de Oliveira Roque, Fabio, Pauliquevis, Carolina Ferreira, Oliveira, Ademir Kleber Morbeck de, Provete, Diogo B., Szabo, Judit K., and Souza, Franco Leandro (2021) Loss of Cultural and Functional Diversity Associated With Birds Across the Urbanization Gradient in a Tropical City. Frontiers in Ecology and Evolution, 9. 615797.

van Gorsel, Eva, Cleverly, James, Beringer, Jason, Cleugh, Helen, Eamus, Derek, Hutley, Lindsay B., Isaac, Peter, and Prober, Suzanne (2018) Preface: OzFlux: a network for the study of ecosystem carbon and water dynamics across Australia and New Zealand. Biogeosciences, 15. pp. 349-352.

van Gorsel, Eva, Wolf, Sebastian, Cleverly, James, Isaac, Peter, Haverd, Vanessa, Ewenz, Cäcilia, Arndt, Stefan, Beringer, Jason, Resco de Dios, Víctor, Evans, Bradley J., Griebel, Anne, Hutley, Lindsay B., Keenan, Trevor, Kljun, Natascha, Macfarlane, Craig, Meyer, Wayne S., McHugh, Ian, Pendall, Elise, Prober, Suzanne M., and Silberstein, Richard (2016) Carbon uptake and water use in woodlands and forests in southern Australia during an extreme heat wave event in the “Angry Summer” of 2012/2013. Biogeosciences, 13 (21). pp. 5947-5964.

van de Leemput, Ingrid A., Hughes, Terry P., van nes, Egbert H., and Scheffer, Marten (2016) Multiple feedbacks and the prevalence of alternate stable states on coral reefs. Coral Reefs, 35 (3). pp. 857-865.

W

Waltham, Nathan J., Wegscheidl, Carla, Volders, Adrian, Smart, James C.R., Hasan, Syezlin, Ledee, Elodie, and Waterhouse, Jane (2021) Land use conversion to improve water quality in high DIN risk, low-lying sugarcane areas of the Great Barrier Reef catchments. Marine Pollution Bulletin, 167. 112373.

Whitman, Taylor N., Negri, Andrew P., Bourne, David G., and Randall, Carly J. (2020) Settlement of larvae from four families of corals in response to a crustose coralline alga and its biochemical morphogens. Scientific Reports, 10. 16397.

Wilson, Shaun K., Robinson, James P.W., Chong-Seng, Karen, Robinson, Jan, and Graham, Nicholas A.J. (2019) Boom and bust of keystone structure on coral reefs. Coral Reefs, 38. pp. 625-635.

Wang, Cong, Beringer, Jason, Hutley, Lindsay B., Cleverly, James, Li, Jing, Liu, Qinhuo, and Sun, Ying (2019) Phenology Dynamics of Dryland Ecosystems Along the North Australian Tropical Transect Revealed by Satellite Solar‐Induced Chlorophyll Fluorescence. Geophysical Research Letters, 46. pp. 5294-5302.

Wismer, Sharon, Tebbett, Sterling B., Streit, Robert P., and Bellwood, David R. (2019) Young fishes persist despite coral loss on the Great Barrier Reef. Communications Biology, 2. 456.

Waltham, Nathan (2016) Unravelling life history of the Inland Freshwater Crab Austrothelphusa transversa in seasonal tropical river catchments. Australian Zoologist, 38 (2). pp. 217-222.

X

Xie, Qiaoyun, Moore, Caitlin E., Cleverly, Jamie, Hall, Christopher C., Ding, Yanling, Ma, Xuanlong, Leigh, Andy, and Huete, Alfredo (2023) Land surface phenology indicators retrieved across diverse ecosystems using a modified threshold algorithm. Ecological Indicators, 147. 110000.

Xie, Zunyi, Huete, Alfredo, Cleverly, James, Phinn, Stuart, Mcdonald-Madden, Eve, Cao, Yanping, and Qin, Fen (2019) Multi-climate mode interactions drive hydrological and vegetation responses to hydroclimatic extremes in Australia. Remote Sensing of Environment, 231. 111270.

Y

Yamamoto, Yuhei, Ichii, Kazuhito, Ryu, Youngryel, Kang, Minseok, Murayama, Shohei, Kim, Su Jin, and Cleverly, Jamie R. (2023) Detection of vegetation drying signals using diurnal variation of land surface temperature: Application to the 2018 East Asia heatwave. Remote Sensing of Environment, 291. 113572.

Yue, Kai, García-Palacios, Pablo, Parsons, Scott A., Yang, Wanqin, Peng, Yan, Tan, Bo, Huang, Chunping, and Wu, Fuzhong (2018) Assessing the temporal dynamics of aquatic and terrestrial litter decomposition in an alpine forest. Functional Ecology, 32 (10). pp. 2464-2475.

Z

Zhang, Weijie, Jung, Martin, Migliavacca, Mirco, Poyatos, Rafael, Miralles, Diego G., El-Madany, Tarek S., Galvagno, Marta, Carrara, Arnaud, Arriga, Nicola, Ibrom, Andreas, Mammarella, Ivan, Papale, Dario, Cleverly, Jamie R., Liddell, Michael, Wohlfahrt, Georg, Markwitz, Christian, Mauder, Matthias, Paul-Limoges, Eugenie, Schmidt, Marius, Wolf, Sebastian, Brümmer, Christian, Arain, M. Altaf, Fares, Silvano, Kato, Tomomichi, Ardö, Jonas, Oechel, Walter, Hanson, Chad, Korkiakoski, Mika, Biraud, Sébastien, Steinbrecher, Rainer, Billesbach, Dave, Montagnani, Leonardo, Woodgate, William, Shao, Changliang, Carvalhais, Nuno, Reichstein, Markus, and Nelson, Jacob A. (2023) The effect of relative humidity on eddy covariance latent heat flux measurements and its implication for partitioning into transpiration and evaporation. Agricultural and Forest Meteorology, 330. 109305.

Zhuang, Wei, Shi, Hao, Ma, Xuanlong, Cleverly, James, Beringer, Jason, Zhang, Yan, He, Jie, Eamus, Derek, and Yu, Qiang (2020) Improving Estimation of Seasonal Evapotranspiration in Australian Tropical Savannas using a Flexible Drought Index. Agricultural and Forest Meteorology, 295. 108203.

Zhang, Zhaoying, Zhang, Yongguang, Porcar-Castell, Albert, Joiner, Joanna, Guanter, Luis, Yang, Xi, Migliavacca, Mirco, Ju, Weimin, Sun, Zhigang, Chen, Shiping, Martini, David, Zhang, Qian, Li, Zhaohui, Cleverly, James, Wang, Hezhou, and Goulas, Yves (2020) Reduction of structural impacts and distinction of photosynthetic pathways in a global estimation of GPP from space-borne solar-induced chlorophyll fluorescence. Remote Sensing of Environment, 240. 111722.

Zolfaghar, Sepideh, Villalobos-Vega, Randol, Zeppel, Melanie, Cleverly, James, Rumman, Rizwana, Hingee, Matthew, Boulain, Nicolas, Li, Zheng, and Eamus, Derek (2017) Transpiration of Eucalyptus woodlands across a natural gradient of depth-to-groundwater. Tree Physiology, 37 (7). pp. 961-975.

Zhao, Wenzhi, Liu, Bing, Chang, Xuexiang, Yang, Qiyue, Yang, Yuting, Liu, Zhiling, Cleverly, James, and Eamus, Derek (2016) Evapotranspiration partitioning, stomatal conductance, and components of the water balance: A special case of a desert ecosystem in China. Journal of Hydrology, 538. pp. 374-386.

Zhuang, W., Cheng, L., Whitley, R., Shi, H., Beringer, J., Wang, Y., He, L., Cleverly, J., Eamus, D., and Yu, Q. (2016) How energy and water availability constrain vegetation water-use along the North Australian Tropical Transect. International Journal of Plant Production, 10 (3). pp. 403-423.

Zolfaghar, Sepideh, Villalobos-vega, Randol, Cleverly, James, and Eamus, Derek (2015) Co-ordination among leaf water relations and xylem vulnerability to embolism o fEucalyptus trees growing along a depth-to-groundwater gradient. Tree Physiology, 35 (7). pp. 732-743.