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Robertson, Alistar I., and Duke, Norman C. (1990) Recruitment, growth and residence time of fishes in a tropical Australian mangrove system. Estuarine, Coastal and Shelf Science, 31 (5). pp. 723-743.

Robertson, A.I., and Duke, N.C. (1987) Mangroves as nursery sites: comparisons of the abundance and species composition of fish and crustaceans in mangroves and other nearshore habitats in tropical Australia. Marine Biology, 96 (2). pp. 193-205.

Smith, Thomas J. III, and Duke, Norman C. (1987) Physical determinants of inter-estuary variation in mangrove species richness around the tropical coastline of Australia. Journal of Biogeography, 14 (1). pp. 9-19.

Poovachiranon, Sombat, Boto, Kevin, and Duke, Norman (1984) Food preference studies and ingestion rate measurements of the mangrove amphipod Parhyale hawaiensis (Dana). Journal of Experimental Marine Biology & Ecology, 98 (1-2). pp. 129-140.

Primack, Richard B., Duke, Norman C., and Tomlinson, P.B. (1981) Floral morphology in relation to pollination ecology in five Queensland coastal plants. Austrobaileya, 1 (4). pp. 346-355.

Book Chapter

Hutchings, P. A., Kingsford, M. J., and Hoegh-Guldberg, Ove (2019) Introduction to the Great Barrier Reef. In: Hutchings, Pat, Kingsford, Michael, and Hoegh-Guldberg, Ove, (eds.) Great Barrier Reef: Biology, Environment and Management. CSIRO Publishing, Clayton South, VIC, Australia, pp. 1-5.

Turton, Stephen M., and Alamgir, Mohammed (2015) Ecological effects of strong winds on forests. In: Peh, Kelvin S-H., Corlett, Richard T., and Bergeron, Yves, (eds.) Routledge Handbook of Forest Ecology. Routledge Handbooks . Routledge, Abingdon, UK, pp. 127-140.

Graham, Nicholas A.J. (2015) Phase shifts and coral reef fishes. In: Mora, Camilo, (ed.) Ecology of Fishes on Coral Reefs. Cambridge University Press, Cambridge, UK, pp. 191-198.

Metcalfe, Daniel, Liddell, Michael, Bradford, Matt, and Green, Peter (2014) Tropical rainforests of eastern Australia. In: Lindenmayer, David, Burns, Emma, Thurgate, Nicole, and Lowe, Andrew, (eds.) Biodiversity and Environmental Change: monitoring, challenges and direction. CSIRO Publishing, Collingwood, VIC, Australia, pp. 111-165.

Kennedy, Patricia L., Lach, Lori, Lugo, Ariel E., and Hobbs, Richard J. (2013) Fauna and novel ecosystems. In: Hobbs, Richard J., Higgs, Eric S., and Hall, Carol M., (eds.) Novel Ecosystems: intervening in the new ecological world order. Wiley-Blackwell, Chichester, UK, pp. 127-141.

Bellwood, David R., Renema, Willem, and Rosen, Brian R. (2012) Biodiversity hotspots, evolution and coral reef biogeography: a review. In: Gower, David J., Johnson, Kenneth G., Richardson, James E., Rosen, Brian R., Rüber, Lukas, and Williams, Suzanne T., (eds.) Biotic Evolution and Environmental Change in Southeast Asia. The Systematics Association Special Volume Series, 82 . Cambridge University Press, New York, USA, pp. 216-245.

Wolanski, Eric, Brinson, Mark M., Cahoon, Donald R., and Perillo, Gerardo M.E. (2009) Coastal Wetlands: a synthesis. In: Perillo, Gerardo M.E., Wolanski, Eric, Cahoon, Donald R., and Brinson, Mark M., (eds.) Coastal Wetlands: an integrated ecosystem approach. Elsevier, Amsterdam, The Netherlands, pp. 1-62.

Mazda, Yoshihiro, and Wolanski, Eric (2009) Hydrodynamics and modelling of water flow in mangrove areas. In: Perillo, Gerardo M.E., Wolanski, Eric, Cahoon, Donald R., and Brinson, Mark M., (eds.) Coastal Wetlands: an Integrated ecosystem ppproach. Elsevier, Amsterdam, The Netherlands, pp. 231-261.

Wolanski, Eric, and Richmond, Robert (2008) Estuary Restoration. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, UK, pp. 1422-1427.

Wolanski, E., Newton, A., Rabalais, N., and Legrand, C. (2008) Coastal zone management. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, pp. 630-637.

Wolanski, E., Chicharo, L., and Chicharo, M.A. (2008) Estuarine ecohydrology. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, pp. 1413-1422.

Duke, N.C., and Larkum, A.W.D. (2008) Mangroves and seagrasses. In: Hutchings, Pat, Kingsford, Mike, and Hoegh-Guldberg, Ove, (eds.) The Great Barrier Reef: Biology, Environment and Management. CSIRO Publishing, Collingwood, VIC, pp. 156-170.

Syms, C. (2008) Ordination. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, pp. 2572-2581.

Syms, C. (2008) Principal components analysis. In: Jorgensen, Sven Erik, and Fath, Brian D., (eds.) Encyclopedia of Ecology. Elsevier, Oxford, pp. 2940-2949.

Wolanski, Eric (2007) Protective functions of coastal forests and trees against natural hazards. In: Braatz, S., Fortuna, S., Broadhead, J., and Leslie, R., (eds.) Coastal Protection in the Aftermath of the Indian Ocean Tsunami: what role for forests and trees? Food and Agriculture Organization of the United Nations, Regional Office for Asia and the Pacific, Bangkok, Thailand, pp. 157-179.

Wolanski, Eric, Spagnol, Simon, and Lim, Eng B. (2002) Fine sediment dynamics in the mangrove-fringed, muddy coastal zone. In: Healy, Terry, Wang, Ying, and Healy, Judy-Ann, (eds.) Muddy Coasts of the World: processes, deposits and function. Proceedings in Marine Science, 4 . Elsevier, Amsterdam, The Netherlands, pp. 279-292.

Duke, Norman (2001) Mangrove phenologies and the factors influencing them in the Australasian region. In: De Lacerda, Luiz-Drude, (ed.) Mangrove Ecosystems: Function and Management. Environmental Science . Springer-Verlag, Berlin, Germany, pp. 217-233.

Report

Bryant, C.V., Carter, A.B., Jarvis, J.C., and Rasheed, M.A. (2016) Port Curtis seagrass seed bank density and viability studies: year 2 report. Report. James Cook University, Cairns, QLD, Australia.

McCormack, C., Chartrand, K., Thomas, R., Tol, S., Szabo, M., and Rasheed, M.A. (2015) Deepwater seagrass dynamics: light requirements, seasonal change and mechanisms of recruitment for deepwater seagrasses: interim report. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Pernice, M., Schliep, M., Szabo, M., Rasheed, M., Bryant, C., York, P., Chartrand, K., Petrou, K., and Ralph, P. (2015) Development of a molecular biology tool kit to monitor dredging-related light stress in the seagrass Zostera muelleri ssp. capricorni in Port Curtis. Report. TropWATER, Cairns, QLD, Australia.

Jarvis, J.C., Scott, E.L., Bryant, C.V., and Rasheed, M.A. (2015) Port Curtis seagrass seed bank density and viability studies: year 1. Report. James Cook University, Cairns, QLD, Australia.

McCormack, C.V., Rasheed, M.A., and Carter, A.B. (2012) Effects of Shading on Zostera capricorni in the Gladstone Western Basin During the Senescent Season: April - July 2012. Report. Department of Agriculture, Fisheries and Forestry, Cairns, QLD, Australia.

Conference Item

Alamgir, Mohammed, and Turton, Stephen (2015) Ecosystem services from small-scale forestry: a comparative analysis. In: Abstracts from the IUFRO Research Group 3.08 Small-scale Forestry Conference. p. 11. From: IUFRO Research Group 3.08 Small-scale Forestry Conference, 11-15 October 2015, Sunshine Coast, QLD, Australia.

Rasheed, Michael, York, Paul, Bryant, Catherine, McKenna, Skye, Chartrand, Katie, and Coles, Rob (2014) Deep-water seagrasses in the tropics: resilience, recovery and establishing thresholds and drivers of change. In: The 11th International Seagrass Biology Workshop: declining seagrasses in a changing world: abstracts. p. 22. From: The 11th International Seagrass Biology Workshop: declining seagrasses in a changing world, 6 - 10 November 2014, Sanya, China.

Jackson, Emma, Nielsen, Jesper, Weatherall, Emily, Bryant, Catherine, Jones, Conor, Hendry, Rebecca, and Campbell, Marnie (2014) Predicting seagrass connectivity in a disturbed environment. In: 51st Australian Marine Sciences Association annual conference: investigating our marine nation: abstracts1st Annual Conference: program handbook and abstracts. p. 101. From: AMSA 2014 Investigating our Marine Nation: 51st Annual Conference of the Australian Marine Sciences Association, 6-10 July 2014, Canberra, Australian Capital Territory.

Bryant, Catherine, Chartrand, Katie, Rasheed, Michael, Leith, Mark, Thomas, Ross, and Ralph, Peter (2014) Seasonal recruitment and senescence in tropical deepwater seagrass meadows. In: 51st Australian Marine Sciences Association annual conference: investigating our marine nation: abstracts. p. 139. From: AMSA 2014 Investigating our Marine Nation: 51st Annual Conference of the Australian Marine Sciences Association, 6-10 July 2014, Canberra, ACT, Australia.

Campbell, Mason, Laurance, William F., and Edwards, Will (2014) The ecological response of lianas to long-term tropical forest fragmentation. In: Abstracts from the 51st Annual Meeting of the Association for Tropical Biology and Conservation. From: ATBC 2014: 51st Annual Meeting of the Association for Tropical Biology and Conservation: the future of tropical biology and conservation, 20-24 July 2014, Cairns, QLD, Australia.

Stieglitz, Thomas (2014) Groundwater-ocean interaction and its effects on coastal ecological processes: are there groundwater-dependant ecosystems in the coastal zone? In: Abstracts from Goldschmidt 2014. p. 2385. From: Goldschmidt 2014 Conference, 8-13 June 2014 , Sacramento, CA, USA.

Moran, Catherine, and Catterall, Carla (2014) Seed dispersing birds respond to local rainforest cover: consequences for seed fate. In: Abstracts from the 51st Annual Meeting of the Association for Tropical Biology and Conservation. From: ATBC 2014: 51st Annual Meeting of the Association for Tropical Biology and Conservation, 20-24 July 2014, Cairns, QLD, Australia.

Sun, Guangzhi, and Heimann, Kirsten (2012) The concept of ecosystem manipulation: what is it, and how does it work in bioremediation? In: Proceedings of the 6th International Conference on Environmental Science and Technology (1) pp. 558-563. From: ICEST2012: 6th International Conference on Environmental Science and Technology, 25-29 June 2012, Houston, TX, USA.

Saiz, G., Goodrick, I., Wurster, C., Nelson, P., Wynn, J., and Bird, M. (2011) Explaining the imbalance in δ13C between soil and biomass in fire-prone tropical savannas. In: Abstracts from 11th Australasian Environmental Isotopes Conference and 4th Australasian Hydrogeology Research Conference. p. 52. From: 11th Australasian Environmental Isotopes Conference and 4th Australasian Hydrogeology Research Conference, 12-14 July 2011, Cairns, QLD, Australia.

Stieglitz, T., and Ridd, P. (2011) Of holes and depressions on the great barrier reef coast - and a physict's toolbox to study them. In: Abstracts from the Third Nereis Park Conference: benthic processes in a globally changing environment. pp. 29-30. From: Third Nereis Park Conference: benthic processes in a globally changing environment, 29-31 August 2011, Kristineberg, Sweden.

Stieglitz, T.C., Clark, J., and Hancock, G. (2011) Rapid seawater circulation through animal burrows in mangrove forests: a significant source of saline groundwater to the tropical coastal ocean. In: Goldschmidt Conference Abstracts. p. 1944. From: Goldschmidt 2011 Earth, Life and Fire, 14-19 August 2011, Prague, Czech Republic.

Book

Loya, Yossi, Puglise, Kimberely A., and Bridge, Tom C.L. (2019) Mesophotic Coral Ecosystems. Coral Reefs of the World, 12 . Springer, Cham, Switzerland.

Perillo, Gerardo M.E., Wolanski, Eric, Cahoon, Donald R., and Brinson, Mark M. (2009) Coastal Wetlands: an integrated ecosystem approach. Elsevier, Amsterdam, the Netherlands.

Sangha, Kamalijit Kaur (2009) Ecological Effects of Tree Clearing: the ecological effects of tree clearing on pasture systems of central Queensland, Australia. VDM Verlag, Saarbrücken, Germany.

Thesis

Peterson, Katie Ann (2020) Applying ecological coexistence theory to improve management. PhD thesis, James Cook University.

Morais Araujo, Renato (2020) The productivity of coral reef fishes. PhD thesis, James Cook University.

Sherman, Carolyn Samantha (2019) Ecology of rays on tropical coral reefs. PhD thesis, James Cook University.

Ruting, Noel (2019) Floristic diversity and patch dynamics in hyper-disturbed tropical lowland rainforest fragments in north Queensland: no evidence for cyclone-disturbance and fragmentation driving species assemblages towards early-successional states. Masters (Research) thesis, James Cook University.

Bierwagen, Stacy L. (2019) Functional roles of reef sharks on the Great Barrier Reef. PhD thesis, James Cook University.

Mohamed, Ibrahim (2018) Adaptive capacity of islands of the Maldives to climate change. PhD thesis, James Cook University.

Roberts, Thomas Edward (2018) Ecological determinants of depth zonation in reef-building corals. PhD thesis, James Cook University.

Richardson, Laura Elizabeth (2018) Variation in structure and function of reef fish assemblages among distinct coral habitats. PhD thesis, James Cook University.

Nordberg, Eric J. (2018) The impacts of cattle grazing on arboreal reptiles. PhD thesis, James Cook University.

Neilly, Heather Louise (2017) Balancing beef with biodiversity: faunal responses to different cattle grazing strategies. PhD thesis, James Cook University.

Nuske, Susan Joy (2017) The importance of declining mammalian fungal specialists for ectomycorrhizal fungal dispersal. PhD thesis, James Cook University.

Mattone, Carlo (2016) Benthic infauna of mangrove forests: dissolved oxygen and environmental settings determine their community composition and function. PhD thesis, James Cook University.

McDuie, Fiona (2016) Critical foraging locations and oceanographic relationships for Great Barrier Reef breeding seabirds. PhD thesis, James Cook University.

Brandl, Simon Johannes (2016) Functional niche partitioning in herbivorous coral reef fishes. PhD thesis, James Cook University.

Palma Gartner, Ana Cristina (2016) Recruitment and dispersal limitations in a chronosequence of secondary forests in tropical Australia. PhD thesis, James Cook University.

Campbell, Mason James (2016) The ecological response of lianas to habitat fragmentation of a tropical rainforest. PhD thesis, James Cook University.

Nash, Kirsty L. (2014) Assessment of scale dependent function in reef fish, and application to the evaluation of coral reef resilience. PhD thesis, James Cook University.

Lema, Anaïs Kimberley (2014) Diversity, stability, and uptake of diazotrophic bacterial communities associated with corals of the Great Barrier Reef. PhD thesis, James Cook University.

Adkins, Merritt Elizabeth (2014) Large bodied fish communities and drivers of use in the shallow waters of a coastal habitat mosaic. Masters (Research) thesis, James Cook University.

Welsh, Justin Quentin (2014) The spatial ecology of coral reef fishes. PhD thesis, James Cook University.

Lee, Michael Siu Fung (2013) Growth and nitrogen fixation of inland and coastal tropical Acacia species. Masters (Research) thesis, James Cook University.

Stegemann, Krista Elizabeth (2013) Spatio-temporal patterns of faunal distribution along a near-pristine estuarine edge environment. Masters (Research) thesis, James Cook University.

Fingerlos, Franz Martin (2012) Long-term variations in bycatch reduction device (BRD) effectiveness and trawl catch rates in a tropical fish assemblage. Masters (Research) thesis, James Cook University.

Fox, Rebecca J. (2012) The trophic and spatial ecology of rabbitfishes (Perciformes, Siganidae) on coral reefs. PhD thesis, James Cook University.

Cole, Andrew (2011) Energetic costs of chronic fish predation on reef-building corals. PhD thesis, James Cook University.

Bridge, Tom (2011) Habitats and sessile benthic megafaunal communities in the mesophotic zone of the Great Barrier Reef World Heritage Area, Australia. PhD thesis, James Cook University.

Manicom, Carryn (2010) Beyond abundance: the direct and indirect effects of predation in a terrestrial trophic web. PhD thesis, James Cook University.

Parsons, Scott Anthony (2010) Decomposition, nutrient cycling and climate change in Australian tropical rainforests. PhD thesis, James Cook University.

Hoey, Andrew Scott (2010) The ecosystem role of macroalgal browsing fishes on coral reefs. PhD thesis, James Cook University.

Rader, Romina (2010) The provision of pollination services to agroecosystems by a diverse assemblage of wild, unmanaged insect taxa. PhD thesis, James Cook University.

Magnusson, Marie (2009) Effects of priority herbicides and their breakdown products on tropical, estuarine microalgae of the Great Barrier Reef Lagoon. PhD thesis, James Cook University.

Pohlman, Catherine Louise (2006) Internal fragmentation in the rainforest: edge effects of highways, powerlines and watercourses on tropical rainforest understorey microclimate, vegetation structure and composition, physical disturbance and seedling regeneration. PhD thesis, James Cook University.

Purcell, Steven William (1997) The role of sediments in epilithic algal communities on coral reefs. PhD thesis, James Cook University.

Lheknim, Vachira (1995) An evaluation of the relative nursery value of sandy shore surf zones and estuary mouths in tropical North Queensland, Australia. PhD thesis, James Cook University of North Queensland.

Thorrold, Simon Robert (1993) Meso-scale patterns in the distribution of larval fishes across the central Great Barrier Reef lagoon and relationships with environmental variability. PhD thesis, James Cook University.

Other

Barbier, Edward B., Koch, Eva-Maria W., Silliman, Brian R., Hacker, Sally D., Wolanski, Eric, Primavera, Jurgenne H., Granek, Elise F., Polasky, Stephen, Aswani, Shankar, Cramer, Lori A., Stoms, David M., Kennedy, Chris J., Bael, David, Kappel, Carrie V., Perillo, Gerardo M.E., and Reed, Denise J. (2008) Vegetation's role in coastal protection: response. American Association for the Advancement of Science.