A

Adekunle, Adeshina I., Cromer, Deborah, and Davenport, Miles P. (2016) Artemisinin-based treatments in pregnant women with mMalaria. New England Journal of Medicine, 375 (3). pp. 283-284.

Adekunle, Adeshina I., Pinkevych, Mykola, McGready, Rose, Luxemburger, Christine, White, Lisa J., Nosten, Francois, Cromer, Deborah, and Davenport, Miles P. (2015) Modeling the dynamics of Plasmodium vivax infection and hypnozoite reactivation in vivo. PLoS Neglected Tropical Diseases, 9. e0003595.

Adekunle, A.I., and Olotu, O. (2013) Optimal control of myocardial infarction due to diabetes. Advanced Modelling and Optimization, 15 (2). pp. 223-233.

Anthony, Kenneth R.N., Hoogenboom, Mia O., Maynard, Jeffrey A., Grottoli, Andréa G., and Middlebrook, Rachael (2009) Energetics approach to predicting mortality risk from environmental stress: a case study of coral bleaching. Functional Ecology, 23 (3). pp. 539-550.

Armsworth, Paul R. (2002) Recruitment limitation, population regulation, and larval connectivity in reef fish metapopulations. Ecology, 83 (4). pp. 1092-1104.

Armsworth, Paul R. (2001) Directed motion in the sea: efficient swimming by reef fish larvae. Journal of Theoretical Biology, 210 (1). pp. 81-91.

Armsworth, Paul R., James, Maurice K., and Bode, Lance (2001) When to press on or turn back: dispersal strategies for reef fish larvae. American Naturalist, 157 (4). pp. 434-450.

Armsworth, Paul R. (2001) Effects of fishing on a protogynous hermaphrodite. Canadian Journal of Fisheries and Aquatic Sciences, 58 (3). pp. 568-578.

Armsworth, Paul R. (2000) Modelling the swimming response of late stage larval reef fish to different stimuli. Marine Ecology-Progress Series, 195. pp. 231-347.

B

Bode, Michael, Armsworth, Paul R., Fox, Helen E., and Bode, Lance (2012) Surrogates for reef fish connectivity when designing marine protected area networks. Marine Ecology Progress Series, 466. pp. 155-166.

Bode, Michael, Bode, Lance, and Armsworth, Paul R. (2011) Different dispersal abilities allow reef fish to coexist. Proceedings of the National Academy of Sciences of the United States of America, 108 (39). pp. 16317-16321.

Barry, Steven I., and Brown, Simon (2009) Modelling parasite density in ruminants. ANZIAM Journal, 50. C696-C712.

Brown, Simon (2007) Two implications of common models of microbial growth. ANZIAM Journal, 49. 340. C230-C242.

Bode, Michael, Bode, Lance, and Armsworth, Paul R. (2006) Larval dispersal reveals regional sources and sinks in the Great Barrier Reef. Marine Ecology Progress Series, 308. pp. 17-25.

Blanco-Martin, Bernardo (2006) Dispersal of coral larvae: a modelling perspective on its determinants and implications. PhD thesis, James Cook University.

C

Critchell, K., Grech, A., Schlaefer, J., Andutta, F.P., Lambrechts, J., Wolanski, E., and Hamann, M. (2015) Modelling the fate of marine debris along a complex shoreline: lessons from the Great Barrier Reef. Estuarine, Coastal and Shelf Science , 167 (Part B). pp. 414-426.

Calija-Zoppolato, Vanja (2004) Evaluation of alternative sugarcane selection strategies. PhD thesis, James Cook University.

D

Doan, Nhut Tan, Cao, Pengxing, Emeto, Theophilus, Mccaw, James, and McBryde, Emma (2018) Predicting the outcomes of new short-course regimens for multidrug-resistant tuberculosis using intrahost and pharmacokinetic-pharmacodynamic modelling. In: Abstracts from the 28th European Congress of Clinical Microbiology and Infectious Diseases. O0235. From: ECCMID: 28th European Congress of Clinical Microbiology and Infectious Diseases, 21 -24 April 2018, Madrid, Spain.

Dornelas, Maria Ana Azeredo de (2006) Coral assemblages and neutral theory. PhD thesis, James Cook University.

E

Elmhirst, Toby, and Golubitsky, Martin (2006) Nilpotent Hopf Bifurcations in coupled cell systems. SIAM Journal Applied Dynamical Systems, 5 (2). pp. 205-251.

Elmhirst, Toby (2003) Spatio-temporal symmetries in SN- and SN×2-equivariant systems. Dynamical Systems, 18 (4). pp. 279-293.

F

Foster, Nicola L., Paris, Claire B., Kool, Johnathan T., Baums, Iliana B., Stevens, Jamie R., Sanchez, Juan A., Bastidas, Carolina, Agudelo, Claudia, Bush, Phillippe, Day, Owen, Ferrari, Renata, Gonzalez, Patricia, Gore, Shannon, Guppy, Reia, McCartney, Michael A., McCoy, Croy, Mendes, Judith, Srinivasan, Ashwanth, Steiner, Sascha, Vermeij, Mark J.A., Weil, Ernesto, and Mumby, Peter J. (2012) Connectivity of Caribbean coral populations: complementary insights from empirical and modelled gene flow. Molecular Ecology, 21 (5). pp. 1143-1157.

G

Golbuu, Yimnang, Wolanski, Eric, Idechong, Jacques Wasai, Victor, Steven, Isechal, Adelle Lukes, Oldiais, Noelle Wenty, Idip, David, Richmond, Robert H., and van Woesik, Robert (2012) Predicting coral recruitment in Palau's complex reef archipelago. PLoS ONE, 7 (11). e50998. pp. 1-10.

Graham, Catherine H., Elith, Jane, Hijmans, Robert J., Guisan, Antoine, Peterson, A. Townsend, Loiselle, Bette A., Anderson, Robert P., Dudík, Miroslav, Ferrier, Simon, Huettmann, Falk, Leathwick, John, Lehmann, Anthony, Li, Jin, Lohmann, Lucia, Manion, Glenn, Moritz, Craig, Nakamura, Miguel, Nakazawa, Yoshinori, Overton, Jake, Phillips, Steven, Richardson, Karen, Scachetti Pereira, Ricardo, Schapire, Robert, Soberón, Jorge, Williams, Stephen, Wisz, Mary, and Zimmermann, Niklaus (2008) The influence of spatial errors in species occurrence data on distribution models. Journal of Applied Ecology, 45 (1). pp. 239-247.

H

Hopf, Jessica Kay (2016) The short- & long-term implications of marine reserves for fisheries on coral reefs. PhD thesis, James Cook University.

Hickson, R.I., and Roberts, M.G. (2014) How population heterogeneity in susceptibility and infectivity influences epidemic dynamics. Journal of Theoretical Biology, 350. pp. 70-80.

Hisano, Mizue, Connolly, Sean R., and Robbins, William D. (2011) Population growth rates of reef sharks with and without fishing on the Great Barrier Reef: robust estimation with multiple models. PLoS ONE, 6 (9). e25028. pp. 1-10.

Hickson, R.I., Mercer, G.N., and Lokuge, K.M. (2011) Sensitivity analysis of a model for tuberculosis. In: Proceedings of 19th International Congress on Modelling and Simulation. pp. 926-932. From: MODSIM 2011 19th International Congress on Modelling and Simulation, 12–16 December 2011, Perth, WA, Australia.

Hoogenboom, M., Beraud, E., and Ferrier-Pagès, C. (2010) Relationship between symbiont density and photosynthetic carbon acquisition in the temperate coral Cladocora caespitosa. Coral Reefs, 29 (1). pp. 21-29.

Hoogenboom, Mia O., Connolly, Sean R., and Anthony, Kenneth R.N. (2009) Effects of photoacclimation on the light niche of corals: a process-based approach. Marine Biology, 156 (12). pp. 2493-2503.

Hoogenboom, Mia O., and Connolly, Sean R. (2009) Defining fundamental niche dimensions of corals: synergistic effects of colony size, light, and flow. Ecology, 90 (3). pp. 767-780.

Hartmann, Klaas, Bode, Lance, and Armsworth, Paul (2006) The economic optimality of learning from marine protected areas. ANZIAM Journal, 48. C307-C329.

J

James, Maurice K., Armsworth, Paul R., Mason, Luciano B., and Bode, Lance (2002) The structure of reef fish metapopulations: modelling larval dispersal and retention patterns. Proceedings of the Royal Society of London Series B, Biological Sciences, 269. pp. 2079-2086.

Jones, R.E. (1977) Movement patterns and egg distribution in cabbage butterflies. Journal of Animal Ecology, 46 (1). pp. 195-212.

K

Kiwango, Halima, Njau, Karoli N., and Wolanski, Eric (2015) The need to enforce minimum environmental flow requirements in Tanzania to preserve estuaries: case study of mangrove-fringed Wami River estuary. Ecohydrology and Hydrobiology, 15 (4). pp. 171-181.

Kool, Johnathan T., Paris, Claire B., Andréfouët, Serge , and Cowen, Robert K. (2010) Complex migration and the development of genetic structure in subdivided populations: an example from Caribbean coral reef ecosystems. Ecography, 33 (3). pp. 597-606.

Kault, David (2000) Uncertainties in predicting the demographic impact of AIDS. Theoretical Population Biology, 57 (4). pp. 309-324.

M

Möller, M., Lymburner, L., and Volk, M. (2007) The comparison index: A tool for assessing the accuracy of image segmentation. International Journal of Applied Earth Observation and Geoinformation, 9 (3). pp. 311-321.

N

Ndii, Meksianis Z., Hickson, R.I., Allingham, David, and Mercer, G.N. (2015) Modelling the transmission dynamics of dengue in the presence of Wolbachia. Mathematical Biosciences, 262. pp. 157-166.

Nguyen, Hoa Thi Minh, Hickson, Roslyn I., Kompas, Tom, Mercer, Geoffry N., and Lokuge, Kamalini M. (2015) Strengthening tuberculosis control overseas: who benefits? Value in Health, 18 (2). pp. 180-188.

Nguyen, Hoa-Thi-Minh, Kompas, Tom, and Hickson, Roslyn I. (2014) Aid and the control of tuberculosis in Papua New Guinea: is Australia's assistance cost-effective? Asia & The Pacific Policy Studies, 1 (2). pp. 364-378.

Northfield, Tobin D., and Ives, Anthony R. (2013) Coevolution and the effects of climate change on interacting species. PLoS Biology, 11 (10). e1001685. pp. 1-13.

Ndii, Meksianis Z., Hickson, Roslyn I., and Mercer, Geoffry N. (2012) Modelling the introduction of wolbachia into Aedes aegypti mosquitoes to reduce dengue transmission. ANZIAM Journal, 53 (3). pp. 213-227.

S

Salomon, Yacov, Connolly, Sean R., and Bode, Lance (2010) Effects of asymmetric dispersal on the coexistence of competing species. Ecology Letters, 13 (4). pp. 432-441.

W

Wisz, M.S., Hijmans, R.J., Li, J., Peterson, A.T., Graham, C.H., Guisan, A., Elith, J., Dudik, M., Ferrier, S., Huettman, F., Leathwick, J.R., Lehmann, A., Lohamnn, L., Loiselle, B.A., Manion, G., Moritz, C., Nakamura, M., Nakazawa, Y., McC. Overton, J., Phillips, S.J., Richardson, K.S., Scachetti-Pereira, R., Schapire, R.E., Soberón, J., Williams, S.E., and Zimmermann, N.E. (2008) Effects of sample size on the performance of species distribution models. Diversity and Distributions, 14 (5). pp. 763-773.

Whinney, James Christopher (2007) Physical conditions on marginal coral reefs. PhD thesis, James Cook University.