Article

McCormick, Mark I., Chivers, Douglas P., Ferrari, Maud C.O., Blandford, Makeely I., Nanninga, Gerrit P., Richardson, Celia, Fakan, Eric P., Vamvounis, George, Gulizia, Alexandra M., and Allan, Bridie J.M. (2020) Microplastic exposure interacts with habitat degradation to affect behaviour and survival of juvenile fish in the field. Proceedings of the Royal Society of London Series B, Biological Sciences, 287 (1937). 20201947.

Petchey, Fiona (2020) New evidence for a mid- to late-Holocene change in the marine reservoir effect across the South Pacific Gyre. Radiocarbon, 62 (1). pp. 127-139.

Hua, Quan, Ulm, Sean, Yu, Kefu, Clark, Tara R., Nothdurft, Luke D., Leonard, Nicole D., Pandolfi, John M., Jacobsen, Geraldine E., and Zhao, Jian-xin (2020) Temporal variability in the Holocene marine radiocarbon reservoir effect for the tropical and South Pacific. Quaternary Science Reviews, 249. 106613.

Petchey, Fiona, and Schmid, Magdalena M.E. (2020) Vital evidence: change in the marine ¹⁴C reservoir around New Zealand (Aotearoa) and implications for the timing of Polynesian settlement. Scientific Reports, 10. 14266.

Wosnick, Natascha, Takatsuka, Verônica, Mello, Ana Eliza, Dias, June, Lubitz, Nicolas, and de Azevedo, Venâncio Guedes (2019) Embryonic malformations in an offspring of the shortnose guitarfish. Brazilian Journal of Oceanography, 67. e19273.

Reichert, Jessica, Arnold, Angelina L., Hoogenboom, Mia O., Schubert, Patrick, and Wilke, Thomas (2019) Impacts of microplastics on growth and health of hermatypic corals are species-specific. Environmental Pollution, 254 (B). 113074.

Woodland, Walmiria, Lim, Richard, Motti, Cherie, Irving, Paul, Wang, Jun, Payne, Mark, Junk, Peter C., and Vamvounis, George (2019) Oil spill source identification using colorimetric detection. Australian Journal of Chemistry, 72 (11). pp. 874-880.

Page, Charlotte E., Leggat, William, Heron, Scott F., Choukroun, Severine M., Lloyd, Jon, and Ainsworth, Tracy D. (2019) Seeking resistance in coral reef ecosystems: the interplay of biophysical factors and bleaching resistance under a changing climate: the interplay of a reef's biophysical factors can mitigate the coral bleaching response. BioEssays, 41 (7). 1800226.

Liu, Meimei, Feng, Qiangmei, Francis, David S., Turchini, Giovanni M., Zeng, Chaoshu, and Wu, Xugan (2019) Tamoxifen affects the histology and hepatopancreatic lipid metabolism of swimming crab Portunus trituberculatus. Aquatic Toxicology, 213. 105220.

Phinn, S.R., Kovacs, E.M., Roelfsema, C.M., Canto, R.F., Collier, C.J., and McKenzie, L.J. (2018) Assessing the potential for satellite image monitoring of seagrass thermal dynamics: for inter-and shallow sub-tidal seagrasses in the inshore Great Barrier Reef World Heritage Area, Australia. International Journal of Digital Earth, 11 (8). pp. 803-824.

Mergvelashvili, N., Andrewartha, J., Baird, M., Herzfeld, M., Jones, E., Mongin, M., Rizwi, F., Robson, B.J., Skerratt, J., Wild-Allen, K., and Steven, Andrew (2018) Simulated fate of catchment-derived sediment on the Great Barrier Reef shelf. Marine Pollution Bulletin, 135. pp. 954-962.

Tamborski, Joseph, Bejannin, Simon, Garcia-Orellana, Jordi, Souhaut, Marc, Charbonnier, Céline, Anschutz, Pierre, Pujo-Pay, Mireille, Conan, Pascal, Crispi, Olivier, Monnin, Christophe, Stieglitz, Thomas, Rodellas, Valentí, Andrisoa, Aladin, Claude, Christelle, and van Beek, Pieter (2018) A comparison between water circulation and terrestrially-driven dissolved silica fluxes to the Mediterranean Sea traced using radium isotopes. Geochimica et Cosmochimica Acta, 238. pp. 496-515.

Disspain, Morgan C.F., Wallis, Lynley A., Fallon, Stewart J., Sumner, Major, St George, Claire, Wilson, Christopher, Wright, Duncan, Gillanders, Bronwyn M., and Ulm, Sean (2017) Direct radiocarbon dating of fish otoliths from mulloway (Argyrosomus japonicus) and black bream (Acanthopagrus butcheri) from Long Point, Coorong, South Australia. Journal of the Anthropological Society of South Australia, 41. pp. 3-17.

Rowen, David J., Templeman, Michelle A., and Kingsford, Michael J. (2017) Herbicide effects on the growth and photosynthetic efficiency of Cassiopea maremetens. Chemosphere, 182. pp. 143-148.

Heindler, Franz M., Alajmi, Fahad, Huerlimann, Roger, Zeng, Chaoshu, Newman, Stephen J., Vamvounis, George, and van Herwerden, Lynne (2017) Toxic effects of polyethylene terephthalate microparticles and Di(2-ethylhexyl)phthalate on the calanoid copepod, Parvocalanus crassirostris. Ecotoxicology and Environmental Safety, 141. pp. 298-305.

Huveneers, Charlie, Stehfest, Kilian M., Simpfendorfer, Colin A., Semmens, Jayson, Hobday, Alistair J., Pederson, Hugh, Stieglitz, Thomas, Vallee, Richard, Webber, Dale, Heupel, Michelle R., and Harcourt, Robert (2017) Application of the Acoustic Propagation Model to a deep-water cross-shelf curtain. Methods in Ecology and Evolution, 8 (10). pp. 1305-1308.

Wooldridge, Scott A., Heron, Scott F., Brodie, Jon E., Done, Terrence J., Masiri, Itsara, and Hinrichs, Saskia (2017) Excess seawater nutrients, enlarged algal symbiont densities and bleaching sensitive reef locations: 2. A regional-scale predictive model for the Great Barrier Reef, Australia. Marine Pollution Bulletin, 114 (1). pp. 343-354.

Mantovanelli, Alessandra, Keating, Shane, Wyatt, Lucy R., Roughan, Moninya, and Schaeffer, Amandine (2017) Lagrangian and Eulerian characterization of two counter-rotating submesoscale eddies in a western boundary current. Journal of Geophysical Research: Oceans, 122 (6). pp. 4902-4921.

Miller, Michaela E., Kroon, Frederieke J., and Motti, Cherie A. (2017) Recovering microplastics from marine samples: a review of current practices. Marine Pollution Bulletin, 123 (1-2). pp. 6-18.

Ramsby, Blake D., Hoogenboom, Mia O., Whalan, Steve, Webster, Nicole S., and Thompson, Angus (2017) A decadal analysis of bioeroding sponge cover on the inshore Great Barrier Reef. Scientific Reports, 7. 2706.

Wilson, Laura J., Fulton, Christopher J., Hogg, Andrew McC., Joyce, Karen E., Radford, Ben T.M., and Fraser, Ceridwen I. (2016) Climate-driven changes to ocean circulation and their inferred impacts on marine dispersal patterns. Global Ecology and Biogeography , 25 (8). pp. 923-939.

Morgan, Kyle M., Perry, Chris T., Smithers, Scott G., Johnson, Jamie A., and Daniell, James J. (2016) Evidence of extensive reef development and high coral cover in nearshore environments: implications for understanding coral adaptation in turbid settings. Scientific Reports, 6. 29616. pp. 1-10.

Morgan, Kyle, Perry, Chris, Smithers, Scott, Johnson, Jamie, and Daniell, James (2016) Exploring the hidden shallows: extensive reef development and resilience within the turbid nearshore Great Barrier Reef. Geophysical Research Abstracts, 18. 8699.

Bay, Line K., Doyle, Jason, Logan, Murray, and Berkelmans, Raymond (2016) Recovery from bleaching is mediated by threshold densities of background thermo-tolerant symbiont types in a reef-building coral. Royal Society Open Science, 3 (6). 160322. pp. 1-10.

Ventura, Patricia, Jarrold, Michael D., Merle, Pierre Laurent, Barnay-Verdier, Stéphanie, Zamoum, Thamilla, Rodolfo-Metalpa, Riccardo, Calosi, Piero, and Furla, Paola (2016) Resilience to ocean acidification: decreased carbonic anhydrase activity in sea anemones under high pCO2 conditions. Marine Ecology Progress Series, 559. pp. 257-263.

Johnson, Martijn S., Kraver, Daniel W., Renshaw, Gillian M.C., and Rummer, Jodie L. (2016) Will ocean acidification affect the early ontogeny of a tropical oviparous elasmobranch (Hemiscyllium ocellatum)? Conservation Physiology, 4 (1). pp. 1-11.

Woodland, Walmiria, Motti, Cherie A., Irving, Paul, Van Herwerden, Lynne, and Vamvounis, George (2016) A colorimetric approach towards polycyclic aromatic hydrocarbon sensing. Australian Journal of Chemistry, 69 (11). CH16176. pp. 1292-1295.

Edmunds, Richard C, Gill, J.A., Baldwin, David H., Linbo, Tiffany L., French, Barbara L., Brown, Tanya L., Esbaugh, Andrew J., Mager, Edward M., Stieglitz, John, Hoenig, Ron, Benetti, Daniel, Grosell, Martin, Scholz, Nathaniel L., and Incardona, John P. (2015) Corresponding morphological and molecular indicators of crude oil toxicity to the developing hearts of mahi mahi. Scientific Reports, 5. 17326.

Devlin, M.J., Massoud, M.S., Hamid, S.A., Al-Zaidan, A., Al-Sarawi, H., Al-Enezi, M., Al-Ghofran, L., Smith, A.J., Barry, J., Stentiford, G.D., Morris, S., da Silva, E.T., and Lyons, B.P. (2015) Changes in the water quality conditions of Kuwait's marine waters: long term impacts of nutrient enrichment. Marine Pollution Bulletin, 100 (2). pp. 607-620.

Templeman, Michelle A., and Kingsford, Michael J. (2015) Predicting aqueous copper and zinc accumulation in the upside-down jellyfish Cassiopea maremetens through the use of biokinetic models. Environmental Monitoring and Assessment, 187 (416). pp. 1-8.

Smith, A.J., McGowan, T., Devlin, M.J., Massoud, M.S., Al-Enezi, M., Al-Zaidan, A.S., Al-Sarawi, H.A., and Lyons, B.P. (2015) Screening for contaminant hotspots in the marine environment of Kuwait using ecotoxicological and chemical screening techniques. Marine Pollution Bulletin, 100 (2). pp. 681-688.

Devlin, Michelle, Le Quesne, Will J.F., and Lyons, Brett P. (2015) The marine environment of Kuwait—emerging issues in a rapidly changing environment. Marine Pollution Bulletin, 100 (2). pp. 593-596.

Bass, Adrian M., Munksgaard, Niels C., O'Grady, Damien, Williams, Michael J.M., Bostock, Helen C., Rintoul, Stephen R., and Bird, Michael I. (2014) Continuous shipboard measurements of oceanic δ^18O, δD and δ^13C(DIC) along a transect from New Zealand to Antarctica using cavity ring-down isotope spectrometry. Journal of Marine Systems, 137. pp. 21-27.

Langlois, Lucas A., and Hoogenboom, Mia O. (2014) Capacity for short-term physiological acclimation to light does not control the lower depth distributions of branching corals. Marine Ecology Progress Series, 508. pp. 149-162.

Pollock, F. Joseph, Lamb, Joleah B., Field, Stuart N., Heron, Scott F., Schaffelke, Britta, Shedrawi, George, Bourne, David G., and Willis, Bette L. (2014) Sediment and turbidity associated with offshore dredging increase coral disease prevalence on nearby reefs. PLoS ONE, 9 (7). e102498. pp. 1-9.

Wyatt, Lucy (2014) High frequency radar applications in coastal monitoring, planning and engineering. Australian Journal of Civil Engineering, 12 (1). pp. 1-15.

Johansen, Jacob L. (2014) Quantifying water flow within aquatic ecosystems using load cell sensors: a profile of currents experienced by coral reef organisms around Lizard Island, Great Barrier Reef, Australia. PLoS ONE, 9 (1). e83240. pp. 1-9.

Wang, Wei, and Wyatt, Lucy (2014) Generalised noise cancellation method for wave estimation by HF surface wave radar. IET Radar Sonar And Navigation, 8 (6). pp. 622-631.

Liu, Gang, Heron, Scott F., Eakin, C. Mark, Muller-Karger, Frank E., Vega-Rodriguez, Maria, Guild, Liane S., De La Cour, Jacqueline L., Geiger, Erick F., Skirving, William J., Burgess, Timothy F.R., Strong, Alan E., Harris, Andy, Maturi, Eileen, Ignatov, Alexander, Sapper, John, Li, Jianke, and Lynds, Susan (2014) Reef-scale thermal stress monitoring of coral ecosystems: new 5-km global products from NOAA coral reef watch. Remote Sensing, 6 (11). pp. 11579-11606.

Boer, M., Marchant, R., and Ridd, P. (2014) Should the pre-1986 coral cover record be used to determine system-wide long-term trends for the Great barrier Reef? Indian Journal of Geo-Marine Sciences, 43 (9). pp. 1626-1649.

Robson, Barbara J. (2014) State of the art in modelling of phosphorus in aquatic systems: review, criticisms and commentary. Environmental Modelling & Software, 61. pp. 339-359.

Waters, Jennifer, Wyatt, Lucy R., Wolf, Judith, Hines, Adrian, and UNSPECIFIED (2013) Data assimilation of partitioned HF radar wave data into Wavewatch III. Ocean Modelling, 72. pp. 17-31.

Wyatt, Lucy R., Jaffrés, Jasmine B.D., and Heron, Mal L. (2013) Spatial averaging of HF radar data for wave measurement applications. Journal of Atmospheric and Oceanic Technology, 30 (9). pp. 2216-2224.

Incardona, John P., Swarts, Tanya L., Edmunds, Richard C., Linbo, Tiffany L., Aquilina-Beck, Allisan, Sloan, Catherine A., Gardner, Luke D., Block, Barbara A., and Scholz, Nathaniel L. (2013) Exxon Valdez to Deepwater Horizon: comparable toxicity of both crude oils to fish early life stages. Aquatic Toxicology, 142-143. pp. 303-316.

Jaffrés, Jasmine B.D. (2013) Mixed layer depth seasonality within the Coral Sea based on Argo data. PLoS ONE, 8 (4). e60985. pp. 1-13.

Fujii, Satoshi, Heron, Malcolm L., Kim, Kuh, Lai, Jian-Wu, Lee, Sang-Ho, Wu, Xiangbai, Wu, Xiongbin, Wyatt, Lucy R., and Yang, Wen-Chang (2013) An overview of developments and applications of oceanographic radar networks in Asia and Oceania countries. Ocean Science Journal, 48 (1). pp. 69-97.

Heron, Malcom L., and Atwater, Daniel P. (2013) Temporal and spatial resolution of HF ocean radars. Ocean Science Journal, 48 (1). pp. 99-103.

Roberts, David A., Birchenough, Silvana N.R., Lewis, Ceri, Sanders, Matthew B., Bolam, Thi, and Sheahan, Dave (2013) Ocean acidification increases the toxicity of contaminated sediments. Global Change Biology, 19 (2). pp. 340-351.

Petchey, Fiona, Ulm, Sean, David, Bruno, McNiven, Ian J., Asmussen, Brit, Tomkins, Helene, Dolby, Nic, Aplin, Ken, Richards, Thomas, Rowe, Cassandra, Leavesley, Matthew, and Mandui, Herman (2013) High-resolution radiocarbon dating of marine materials in archaeological contexts: radiocarbon marine reservoir variability between Anadara, Gafrarium, Batissa, Polymesoda spp. and Echinoidea at Caution Bay, Southern Coastal Papua New Guinea. Archaeological and Anthropological Sciences, 5 (1). pp. 69-80.

Chollett, IIiana, Müller-Karger, Frank E., Heron, Scott F., Skirving, William, and Mumby, Peter J. (2012) Seasonal and spatial heterogeneity of recent sea surface temperature trends in the Caribbean Sea and southeast Gulf of Mexico. Marine Pollution Bulletin, 64 (5). pp. 956-965.

Roberts, David A. (2012) Causes and ecological effects of resuspended contaminated sediments (RCS) in marine environments. Environment International, 40 (2012). pp. 230-243.

Petchey, Fiona, Ulm, Sean, David, Bruno, McNiven, Ian J., Asmussen, Brit, Tomkins, Helene, Richards, Thomas, Rowe, Cassandra, Leavesley, Matthew, Mandui, Herman, and Stanisic, John (2012) 14C marine reservoir variability in herbivores and deposit-feeding gastropods from an open coastline, Papua New Guinea. Radiocarbon, 54 (3-4). pp. 967-978.

Leahy, Susannah, McCormick, Mark I., Mitchell, Matthew D., and Ferrari, Maud C.O. (2011) To fear or to feed: the effects of turbidity on perception of risk by a marine fish. Biology Letters, 7 (6). pp. 811-813.

Spillman, Claire M., Heron, Scott F., Jury, Mark R., and Anthony, Kenneth R. N. (2011) Climate change and carbon threats to coral reefs: national meteorological and ocean services as sentinels. Bulletin of the Amercian Meteorological Society, 92 (12). pp. 1581-1586.

Bannister, Raymond, Hoogenboom, Mia, Anthony, Kenneth R. N., Battershill, Chris, Whalan, Stephen, Webster, Nicole, and De Nys, Rocky (2011) Incongruence between the distribution of a common coral reef sponge and photosynthesis. Marine Ecology Progress Series, 423. pp. 95-100.

Robinson, A.M., Wyatt, L.R., and Howarth, M.J. (2011) A two year comparison between HF radar and ADCP current measurements in Liverpool Bay. Journal Of Operational Oceanography, 4 (1). pp. 33-45.

Wyatt, Lucy R., Green, J.Jim, and Middleditch, A. (2011) HF radar data quality requirements for wave measurement. Coastal engineering, 58 (4). pp. 327-336.

Schneider, Kenneth, Silverman, Jacob, Woolsey, Erika, Eriksson, Hampus, Byrne, Maria, and Caldeira, Ken (2011) Potential influence of sea cucumbers on coral reef CaCO3 budget: a case study at One Tree Reef. Journal of Geophysical Research: biogeosciences, 116. G04032-G04032.

Wang, W., and Wyatt, L.R. (2011) Radio frequency interference cancellation for sea-state remote sensing by high-frequency radar. IET Radar, Sonar and Navigation, 5 (4). pp. 405-415.

Ridd, Peter V., Orpin, Alan R., Stieglitz, Thomas C., and Brunskill, Gregg J. (2011) Will reducing agricultural runoff drive recovery of coral biodiversity and macroalgae cover on the Great Barrier Reef? Ecological Applications, 21 (8). pp. 3332-3335.

Roberts, David A., Johnston, Emma L., and Knott, Nathan A. (2010) Impacts of desalination plant discharges on the marine environment: a critical review of published studies. Water Research, 44 (18). pp. 5117-5128.

Choukroun, Séverine, Ridd, Peter V., Brinkman, Richard, and McKinna, Lachlan I.W. (2010) On the surface circulation in the western Coral Sea and residence times in the Great Barrier Reef. Journal of Geophysical Research: oceans, 115. C06013. pp. 1-13.

O'Connor, Sue, Ulm, Sean, Fallon, Stewart J., Barham, Anthony, and Loch, Ian (2010) Pre-bomb marine reservoir variability in the Kimberley region, Western Australia. Radiocarbon, 52 (2-3). pp. 1158-1165.

Templeman, Michelle A., and Kingsford, Michael J. (2010) Trace element accumulation in Cassiopea sp. (Scyphozoa) from urban marine environments in Australia. Marine Environmental Research, 69 (2). pp. 63-72.

Ulm, Sean, Petchey, Fiona, and Ross, Annie (2009) Marine reservoir corrections for Moreton Bay, Australia. Archaeology in Oceania, 44 (3). pp. 160-166.

Wyatt, Lucy R., Green, J.Jim, and Middleditch, Andrew (2009) Signal sampling impacts on HF radar wave measurement. Journal of Atmospheric and Oceanic Technology, 26 (4). pp. 793-805.

Roberts , David A., Johnston, Emma L., and Poore, Alistair G.B. (2008) Biomonitors and the assessment of ecological impacts: distribution of herbivorous epifauna in contaminated macroalgal beds. Environmental Pollution, 156 (2). pp. 489-503.

Sofonia, Jeremy J., and Anthony, Kenneth R.N. (2008) High-sediment tolerance in the reef coral Turbinaria mesenterina from the inner Great Barrier Reef lagoon (Australia). Estuarine, Coastal and Shelf Science , 78 (4). pp. 748-752.

Heron, S.F., and Ridd, P.V. (2008) The tidal flushing of multiple-loop animal burrows. Estuarine, Coastal and Shelf Science , 78 (1). pp. 135-144.

Roberts , David A., Johnston, Emma L., and Poore, Alistair G.B. (2008) Contamination of marine biogenic habitats and effects upon associated epifauna. Marine Pollution Bulletin, 56 (6). pp. 1057-1065.

Mao, Yadan, and Heron, Malcolm L. (2008) The influence of fetch on the response of surface currents to wind studied by HF ocean surface radar. Journal of Physical Oceanography, 38 (5). pp. 1107-1121.

Roberts , David A., Johnston, Emma L., Müller, Stefanie, and Poore, Alistair G.B. (2008) Field and laboratory simulations of storm water pulses: behavioural avoidance by marine epifauna. Environmental Pollution, 152 (1). pp. 153-162.

Lewis, Stephen E., Wust, Raphael A.J., Webster, Jody M., and Shields, Graham A. (2008) Mid-late Holocene sea-level variability in eastern Australia. Terra Nova, 20 (1). pp. 74-81.

Petchey, Fiona, Anderson, Atholl, Zondervan, Albert, Ulm, Sean, and Hogg, Alan (2008) New marine ∆R values for the South Pacific subtropical gyre region. Radiocarbon, 50 (3). pp. 373-397.

Kingsford, Michael J., Patterson, Heather M., and Flood, Matthew J. (2008) The influence of elemental chemistry on the widths of otolith increments in the neon damselfish (Pomacentrus coelestis). Fishery Bulletin, 106 (2). pp. 135-142.

Aswani, S., Albert, S., Sabetian, A., and Furusawa, T. (2007) Customary management as precautionary and adaptive principles for protecting coral reefs in Oceania. Coral Reefs, 26 (4). pp. 1009-1021.

Fass, T., Cook, P.G., Stieglitz, T., and Herczeg, A.L. (2007) Development of saline ground water through transpiration of sea water. Ground Water, 45 (6). pp. 703-710.

Wang, Yonghong, Heron, Malcolm M., Prytz, Arnstein, Ridd, Peter V., Steinberg, Craig R., and Hacker, Jörg M. (2007) Evaluation of a new airborne microwave remote sensing radiometer by measuring the salinity gradients across the shelf of the Great Barrier Reef lagoon. IEEE Transactions on Geoscience and Remote Sensing, 45 (11). pp. 3701-3709.

Jones, Graham, Curran, Mark, Broadbent, Andrew, King, Stacey, Fischer, Esther, and Jones, Rosemary (2007) Factors affecting the cycling of dimethylsulfide and dimethylsulfoniopropionate in coral reef waters of the Great Barrier Reef. Environmental Chemistry, 4 (5). pp. 310-322.

Roberts, David A., Poore, Alistair G.B., and Johnston, Emma L. (2007) MBACI sampling of an episodic disturbance: stormwater effects on algal epifauna. Marine Environmental Research, 64 (4). pp. 514-523.

Kosnik, Matthew A., Hua, Quan, Jacobsen, Geraldine E., Kaufman, Darrell S., and Wust, Raphael A. (2007) Sediment mixing and stratigraphic disorder revealed by the age-structure of Tellina shells in Great Barrier Reef sediment. Geology, 35 (9). pp. 811-814.

Brandini, Frederico Pereira, da Silva, Ariel Scheffer, da Silva, Eduardo Teixeira, and Kolm, Hedda (2007) Sources of nutrients and seasonal dynamics of chlorophyll in the inner shelf off Paraná State-South Brazil Bight. Journal of Coastal Research, 23 (5). pp. 1131-1140.

Kench, Paul S., Nichol, Scott L., McLean, Roger F., Smithers, Scott G., and Brander, Robert W. (2007) Impact of the Sumatran tsunami on the geomorphology and sediments of reef islands: South Maalhosmadulu Atoll, Maldives. Atoll Research Bulletin, 544. pp. 105-134.

Anthony, K.R.N., and Kerswell, A.P. (2007) Coral mortality following extreme low tides and high solar radiation. Marine Biology, 151 (5). pp. 1623-1631.

Stieglitz, Thomas C., Rapaglia, John, and Krupa, Steven C. (2007) An effect of pier pilings on nearshore submarine groundwater discharge from a (partially) confined aquifer. Estuaries and Coasts, 30 (3). pp. 543-550.

Holliday, D., Stieglitz, T.C., Ridd, P.V., and Read, W.W. (2007) Geological controls and tidal forcing of submarine groundwater discharge from a confined aquifer in a coastal sand dune system. Journal of Geophysical Research: oceans, 112. pp. 1-10.

Brodie, J., De'ath, G., Devlin, M., Furnas, M., and Wright, M. (2007) Spatial and temporal patterns of near-surface chlorophyll a in the Great Barrier Reef lagoon. Marine and Freshwater Research, 58 (4). pp. 342-353.

Lewis, Stephen E., Shields, Graham A., Kamber, Balz S., and Lough, Janice M. (2007) A multi-trace element coral record of land-use changes in the Burdekin River catchment, NE Australia. Palaeogeography, Palaeoclimatology, Palaeoecology, 246 (2-4). pp. 471-487.

Luick, John L., Mason, Luciano, Hardy, Thomas, and Furnas, Miles J. (2007) Circulation in the Great Barrier Reef Lagoon using numerical tracers and in situ data. Continental Shelf Research, 27 (6). pp. 757-778.

Markey, Kathryn L., Baird, Andrew H., Humphrey, Craig, and Negri, Andrew P. (2007) Insecticides and a fungicide affect multiple coral life stages. Marine Ecology Progress Series, 330. pp. 127-137.

Ulm, Sean (2006) Australian marine reservoir effects: a guide to ∆R values. Australian Archaeology, 63. pp. 57-60.

Perry, Christopher T., and Smithers, Scott G. (2006) Taphonomic signatures of turbid-zone reef development: examples from Paluma Shoals and Lugger Shoal, inshore central Great Barrier Reef, Australia. Palaeogeography, Palaeoclimatology, Palaeoecology, 242 (1-2). pp. 1-20.

Mantovanelli, Alessandra, and Ridd, Peter V. (2006) Devices to measure settling velocities of cohesive sediment aggregates: a review of the in situ technology. Journal of Sea Research, 56 (3). pp. 199-226.

Aragones, Lemnuel V., Lawler, Ivan R., Foley, William J., and Marsh, Helene (2006) Dugong grazing and turtle cropping: grazing optimization in tropical seagrass systems? Oecologia, 149 (4). pp. 635-647.

Guinotte, John M., Orr, James, Cairns, Stephen, Freiwald, Andre, Morgan, Lance, and George, Robert (2006) Will human-induced changes in seawater chemistry alter the distribution of deep-sea scleractinian corals? Frontiers in Ecology and the Environment, 4 (3). pp. 141-146.

Baird, A.H., Salih, A., and Trevor-Jones, A. (2006) Fluorescence census techniques for the early detection of coral recruits. Coral Reefs, 25 (1). pp. 73-76.

Broadbent, Andrew, and Jones, Graham (2006) Seasonal and diurnal cycles of dimethylsulfide, dimethylsulfoniopropionate and dimethylsulfoxide at One Tree Reef Lagoon. Environmental Chemistry, 3 (4). pp. 260-267.

Cappo, Mike, De'ath, Glenn, Boyle, Steve, Aumend, James, Olbrich, Roland, Hoedt, Frank, Perna, Colton, and Brunskill, Gregg (2005) Development of a robust classifier of freshwater residence in barramundi (Lates calcarifer) life histories using elemental ratios in scales and boosted regression trees. Marine and Freshwater Research, 56 (5). pp. 713-723.

Thomas, Severine, and Ridd, Peter (2005) Field assessment of innovative sensor for monitoring of sediment accumulation at inshore coral reefs. Marine Pollution Bulletin, 51 (1). pp. 470-480.

Furnas, Miles, Mitchell, Alan, Skuza, Michelle, and Brodie, Jon (2005) In the other 90%: phytoplankton responses to enhanced nutrient availability in the Great Barrier Reef lagoon. Marine Pollution Bulletin, 51 (1). pp. 253-265.

McKergow, Lucy A., Prosser, Ian P., Hughes, Andrew O., and Brodie, Jon (2005) Regional scale nutrient modelling: exports to the Great Barrier Reef World Heritage Area. Marine Pollution Bulletin, 51 (1). pp. 186-199.

Mitchell, C., Brodie, J., and White, I. (2005) Sediments, nutrients and pesticide residues in event flow conditions in streams of the Mackay Whitsunday Region, Australia. Marine Pollution Bulletin, 51 (1). pp. 23-36.

McKergow, Lucy A., Prosser, Ian P., Hughes, Andrew O., and Brodie, Jon (2005) Sources of sediment to the Great Barrier Reef World Heritage Area. Marine Pollution Bulletin, 51 (1). pp. 200-211.

Moss, Andrew, Brodie, Jon, and Furnas, Miles (2005) Water quality guidelines for the Great Barrier Reef World Heritage Area: a basis for development and preliminary values. Marine Pollution Bulletin, 51 (1). pp. 76-88.

Greiner, R., Herr, A., Brodie, J., and Haynes, D. (2005) A multi-criteria approach to Great Barrier Reef catchment (Queensland, Australia) diffuse-source pollution problem. Marine Pollution Bulletin, 51 (1). pp. 128-137.

Hua, Quan, Woodroffe, Colin D., Barbetti, Mike, Smithers, Scott G., Zoppi, Ugo, and Fink, David (2004) Marine reservoir correction for the Cocos (Keeling) Islands, Indian Ocean. Radiocarbon, 46 (2). pp. 603-610.

Trevena, Anne J., Jones, Graham B., Wright, Simon W., and van den Enden, Rick L. (2003) Profiles of dimethylsulphoniopropionate (DMSP), algal pigments, nutrients, and salinity in the fast ice of Prydz Bay, Antarctica. Journal of Geophysical Research: oceans, 108 (C5). 14. pp. 1-11.

Nott, Jonathan (2003) Waves, coastal boulder deposits and the importance of the pre-transport setting. Earth and Planetary Science Letters, 210 (1-2). pp. 269-276.

Ridd, P.V., and Stieglitz, T. (2002) Dry season salinity changes in arid estuaries fringed by mangroves and saltflats. Estuarine, Coastal and Shelf Science , 54 (6). pp. 1039-1049.

Ulm, Sean (2002) Marine and estuarine reservoir effects in central Queensland, Australia: determination of ΔR values. Geoarchaeology, 17 (4). pp. 319-348.

Peterson, Eric L., Wadhwa, Lal C., and Harris, Jonathan A. (2001) Arrangement of aerators in an intensive shrimp growout pond having a rectangular shape. Aquacultural Engineering, 25 (1). pp. 51-65.

Webster, Nicole S., Webb, Richard I., Ridd, Michael J., Hill, Russell T., and Negri, Andrew P. (2001) The effects of copper on the microbial community of a coral reef sponge. Environmental Microbiology, 3 (1). pp. 19-31.

Woodroffe, C.D., Kennedy, D.M., Hopley, D., Rasmussen, C.E., and Smithers, S.G. (2000) Holocene reef growth in Torres Strait. Marine Geology, 170 (3-4). pp. 331-346.

Peterson, Eric L., Harris, Jonathan A., and Wadhwa, Lal C. (2000) CFD modelling pond dynamic processes. Aquacultural Engineering, 23 (1-3). pp. 61-93.

Peterson, Eric L. (2000) Observations of pond hydrodynamics. Aquacultural Engineering, 21 (4). pp. 247-269.

Feng, Yunjiang, Bowden, Bruce, and Kapoor, Vimal (2000) Screening marine natural products for selective inhibitors of key kynurenine pathway enzyme. Redox Report, 5 (2-3). pp. 95-97.

Bowden, Bruce F, Towerzey, Leanne, and Junk, Peter C (2000) A new brominated diphenyl ether from the marine sponge Dysidea herbacea. Australian Journal of Chemistry, 53 (4). pp. 299-301.

Heron, S.F., and Heron, M.L. (1998) A Comparison of algorithms for extracting significant wave height from HF radar ocean backscatter spectra. Journal of Atmospheric and Oceanic Technology, 15 (5). pp. 1157-1163.

Book Chapter

Eakin, C.M., Lough, J.M., and Heron, Scott (2009) Climate variability and change: monitoring data and evidence for increased coral bleaching stress. In: van Oppen, Madeleine J.H., and Lough, Janice M., (eds.) Coral Bleaching: patterns, processes, causes and consequences. Ecological Studies, 205 . Springer, Berlin, Germany, pp. 41-67.

Donner, Simon D., Heron, Scott F., and Skirving, William (2009) Future scenarios: a review of modelling efforts to predict the future of coral reefs in an era of climate change. In: van Oppen, Madeleine J.H., and Lough, Janice M., (eds.) Coral Bleaching: Patterns, Processes Causes and Consequences. Ecological Studies, 205 . Springer, Berlin, Germany, pp. 159-173.

Report

Schaffelke, Britta, Collier, Catherine, Kroon, Frederieke, Lough, Janice, McKenzie, Len, Ronan, Mike, Uthicke, Sven, and Brodie, Jon (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition, Chapter 1: the condition of coastal and marine ecosystems of the Great Barrioer Reef and their responses to water quality and disturbances. Report Section. State of Queensland.

Waterhouse, Jane, Brodie, Jon, Tracey, Dieter, Smith, Rachel, VanderGragt, Maria, Collier, Catherine, Petus, Caroline, Baird, Mark, Kroon, Frederieke, Mann, Reiner, Sutcliffe, Terri, Waters, Davis, and Adame, Fernanda (2017) 2017 Scientific Consensus Statement: land use impacts on the Great Barrier Reef water quality and ecosystem condition, Chapter 3: the risk from anthropogenic pollutants to Great Barrier Reef coastal and marine ecosystems. Report Section. State of Queensland.

McCormack, C., Chartrand, K., Thomas, R., Tol, S., Szabo, M., and Rasheed, M.A. (2015) Deepwater seagrass dynamics: light requirements, seasonal change and mechanisms of recruitment for deepwater seagrasses: interim report. Report. TropWATER, James Cook University, Cairns, QLD, Australia.

Devlin, Michelle, Wenger, Amelia, Petus, Caroline, da Silva, Eduardo Teixeira, Debose, Jennifer, and Álvarez-Romero, Jorge (2012) Reef Rescue Monitoring Program: final report of JCU activities 2011/12: flood plumes and extreme weather monitoring for the Great Barrier Reef Marine Park Authority. Report. James Cook University, Townsville, QLD, Australia.

Conference Item

Kang, Chnag-Wei, Tandiono, Tandiono, Lu, Xin, Turangan, Cary K., Osman, Hafiiz, Lim, Fannon, Lucas, Margaret, and Tan, Matthew (2018) Numerical and experimental studies of collapsing captivation bubbles for ballast water treatment. In: Proceedings of the International Conference on Ocean, Offshore and Arctic Engineering (8) OMAE2018-77157. From: OMAE18: 37th International Conference on Ocean, Offshore and Arctic Engineering, June 17-22 2018, Madrid, Spain.

Malekzadeh, M., and Sivakugan, S. (2016) Assessing the use of aluminium electrodes on the electrokinetic dewatering and stabilization of dredged mud slurries. In: Selected Papers from Sessions of Geo-Chicago 2016. pp. 188-202. From: Geo-Chicago 2016: sustainable waste management and remediation, 14-18 August 2016, Chicago, IL, USA.

Robson, Barbara (2013) A systematic review of the treatment of phosphorus in biogeochemical and ecological models. In: Proceedings of the 20th International Congress on Modelling and Simulation. pp. 1784-1790. From: MODSIM2013: 20th International Congress on Modelling and Simulation, 1-6 December 2013, Adelaide, SA, Australia.

Wyatt, Lucy R., Atwater, Dan, Mantovanelli, Allessandra, Prytz, Arnstein, and Rehder, Sven (2013) The Australian Coastal Ocean Radar Network data availability and quality. In: Proceedings of the International Radar Symposium (2) pp. 405-410. From: IRS 2013: International Radar Symposium, 9-21 June 2013, Dresden, Germany.

Heron, M.L., O'Shea, M., Murphy, J., Petersen, L., Mollaghan, D., and Prytz, A. (2013) Interpretation of VHF radar echoes from a complex flow field. In: Proceedings of Oceans 2013 MTS/IEEE San Diego. 6741266. pp. 1-4. From: Oceans 2013 MTS/IEEE San Diego, 23-27 September 2013, San Diego, CA, USA.

Heron, Malcolm L. (2013) Mapping currents at tidal turbine sites using VHF high resolution ocean radar. In: Proceedings of Oceans 2013 MTS/IEEE Bergen. From: Oceans 2013 MTS/IEEE Bergen, 10-13 June 2013, Bergen, Norway.

Atwater, Daniel, Mantovanelli, Alessandra, Prytz, Arnstein, Rehder, Sven, and Wyatt, Lucy (2013) Operational requirements for oceanographic ground-wave HF radars: experiences from the Australian Coastal Ocean Radar Network. In: Proceedings of the International Conference on Radar. pp. 118-121. From: International Conference on Radar, 9-12 September 2013, Adelaide, SA, Australia.

Wyatt, L.R., Atwater, D., Prytz, A., and Rehder, S. (2013) A comparison between SeaSonde and WERA HF radar current measurements. In: Proceedings of Oceans 2013 MTS/IEEE Bergen. From: Oceans 2013 MTS/IEEE Bergen, 10-13 June 2013, Bergen, Norway.

Heron, Mal, Wyatt, Lucy, Atwater, Daniel, and Prytz, Arnstein (2012) The Australian coastal ocean radar network: lessons learned in the establishment phase. In: OCEANS, 2012 - YEOSU. pp. 1-5. From: OCEANS, 2012 - YEOSU, 21-24 May 2012, Yeosu, Korea (South).

Jaffrés, Jasmine B.D., and Heron, Malcolm L. (2011) Wave climate in the Southern Great Barrier Reef, Australia: evaluation of an ocean HF radar system and WaveWatch3. In: Proccedings of OCEANS 2011. pp. 1-6. From: OCEANS 2011 MTS/IEEE Kona, 19-22 September 2011, Waikoloa, HI, USA.

Heron, Mal, Prytz, Arnstein, and Steinberg, Craig (2011) High Resolution Ocean Radar Observations in Ports and Harbours. In: Proceedings of Coasts and Ports 2011. pp. 1-6. From: Coasts and Ports 2011, 28 - 30 September 2011, Perth, WA, Australia.

Mantovanelli, A., Heron, M.L., Prytz, A., Steinberg, C.R., and Wisdom, E. (2011) Validation of radar-based Lagrangian trajectories against surface-drogued drifters in the coral sea, Australia. In: Proceedings of OCEANS 2011. pp. 1-4. From: OCEANS 2011 MTS/IEEE Kona, 19-22 September 2011, Waikoloa, HI, USA.

Jaffrés, Jasmine B.D., and Heron, Mal (2011) Wave Climate off the Perth Coast: evaluation of an ocean HF radar system and WaveWatch3. In: Proceedings of Coasts and Ports 2011. pp. 1-6. From: Coasts and Ports 2011, 28 - 30 September 2011, Perth, WA, Australia.

Heron, M.L., and Prytz, A. (2011) The data archive for the phased array HF radars in the Australian Coastal Ocean Radar Network. In: Proceedings of OCEANS 2011 IEEE Spain. pp. 1-4. From: OCEANS 2011 IEEE Spain, 6-9 June 2011, Santander, Spain.

Heron, M.L. (2009) The Australian coastal ocean radar network facility. In: Proceedings of the Canadian Conference on Electrical and Computer Engineering 2009. pp. 23-26. From: Canadian Conference on Electrical and Computer Engineering 2009, 3-6 May 2009, St John's, NFLD, Canada.

Heron, M.L., and Prytz, A. (2009) HF radar role in an integrated ocean observing system. In: Proceedings of the Oceans 2009 - Europe Conference . pp. 1-4. From: Oceans 2009 - Europe Conference , 11-14 May, 2009, Bremen, Germany.

Wyatt, Lucy R., Green, J. Jim, and Middleditch, Andrew (2008) Directional spectra comparisons between HF radar and a wave model. In: Proceedings of the IEEE/OES/CMTC 9th Working Conference on Current Measurement Technology. pp. 211-216. From: IEEE/OES/CMTC 9th Working Conference on Current Measurement Technology, 17-19 March 2008, Charlston, SC, USA.

Wyatt, L.R., Green, J.J., Middleditch, A., and Waters, J.C. (2008) HF radar directional spectra validation with buoy and model data. In: Proceedings of the 27th International Conference on Offshore Mechanics and Arctic Engineering (4) OMAE2008-57742. pp. 869-877. From: ASME 2008: 27th International Conference on Offshore Mechanics and Arctic Engineering, 15-20 June 2008, Estoril, Portugal.

Baird, Andrew H., Gilmour, James P., Kamiki, Takayuki M., Nonaka, Masanori, Pratchett, Morgan S., Yamamoto, Hiromi H., and Yamasaki, Hideo (2006) Temperature tolerance of symbiotic and non-symbiotic coral larvae. In: Proceedings of the 10th International Coral Reef Symposium. pp. 38-42. From: 10th International Coral Reef Symposium, 28 June - 2 July 2004, Okinawa, Japan.

Willis, Simon L., and Kikkert, Cornelis J. (2005) Radio propagation model for long-range Ad-hoc wireless sensor network. In: Proceedings of the 2005 International Conference on Wireless Networks, Communications and Mobile Computing (1) pp. 1-6. From: 2005 International Conference on Wireless Networks, Communications and Mobile Computing, 13 - 16 June 2005, Maui, Hawaii.

Thesis

Critchell, Kay Lilian (2018) Using hydrodynamic models to understand the impacts and risks of plastic pollution. PhD thesis, James Cook University.

Ramsby, Blake Donald (2018) The effects of a changing marine environment on the bioeroding sponge Cliona orientalis. PhD thesis, James Cook University.

Nicolet, Katia Jane (2017) Vectors and environmental drivers of coral disease dynamics on the Great Barrier Reef. PhD thesis, James Cook University.

Stark, Clair (2016) Spatial and temporal water quality changes during a large scale dredging operation. PhD thesis, James Cook University.

Browne, Nicola (2011) A carbonate and terrigenous sediment budget for inshore turbid reefs on the Great Barrier Reef. PhD thesis, James Cook University.

Jaffrés, Jasmine Bernadette Denise (2011) The oceanographic and geochemical effects of mixed layer depth variability and increasing anthropogenic CO₂ on the inorganic carbon system of the Coral Sea. PhD thesis, James Cook University.

Lee, Anne Michelle (2010) Spatio-temporal factors affecting the growth of cultured silver-lip pearl oyster, Pinctada maxima (Jameson) (Mollusca: Pteriidae) in West Papua, Indonesia. PhD thesis, James Cook University.

Cooper, Timothy F. (2008) Coral bioindicators of environmental conditions on coastal coral reefs. PhD thesis, James Cook University.

Bird, James C. (2005) Modelling sub-reef thermodynamics to predict coral bleaching: a case study at Scott Reef, WA. Masters (Research) thesis, James Cook University.

Doherty, Gregory Brian (2001) Natural and anthropogenic influences upon trace metal geochemistry in sediments of Cleveland Bay and adjacent areas of the Great Barrier Reef Lagoon. PhD thesis, James Cook University.

Rasmussen, Cecily Ellen (1994) Anthropogenic disturbance of environmental signals retained in massive corals. PhD thesis, James Cook University.

Hughes, Rowan David (1993) An investigation of the Coral Sea with an ocean general circulation model. PhD thesis, James Cook University of North Queensland.

Chongprasith, Pornsook (1992) Nutrient release and nitrogen transformations resulting from resuspension of Great Barrier Reef shelf sediments. PhD thesis, James Cook University of North Queensland.