Khalil, Andrew M., Gainsford, Ashton, and van Herwerden, Lynne (2023) DNA barcoding of fresh seafood in Australian markets reveals misleading labelling and sale of endangered species. Journal of Fish Biology, 102 (3). pp. 727-733.

Gulizia, Alexandra M., Patel, Kishan, Philippa, Bronson, Motti, Cherie A., van Herwerden, Lynne, and Vamvounis, George (2023) Understanding plasticiser leaching from polystyrene microplastics. Science of the Total Environment, 857. 159099.

Gurdek-Bas, Rodrigo, Benthuysen, Jessica A., Harrison, Hugo B., Zenger, Kyall R., and van Herwerden, Lynne (2022) The El Niño Southern Oscillation drives multidirectional inter-reef larval connectivity in the Great Barrier Reef. Scientific Reports, 12 (1). 21290.

Santana, Marina F.M., Kroon, Frederieke J., van Herwerden, Lynne, Vamvounis, George, and Motti, Cherie A. (2022) An assessment workflow to recover microplastics from complex biological matrices. Marine Pollution Bulletin, 179. 113676.

Santana, Marina F.M., Dawson, Amanda L., Motti, Cherie, van Herwerden, Lynne, Lefevre, Carine, and Kroon, Frederieke (2021) Ingestion and depuration of microplastics by a planktivorous coral reef fish, Pomacentrus amboinensis. Frontiers in Environmental Science, 9. 641135.

Gainsford, A., Jones, G.P., Gardner, M.G., and van Herwerden, L. (2020) Characterisation and cross-amplification of 42 microsatellite markers in two Amphiprion species (Pomacentridae) and a natural hybrid anemonefish to inform genetic structure within a hybrid zone. Molecular Biology Reports, 47 (2). pp. 1521-1525.

Steinberg, Rosemary K., van der Meer, Martin H., Pratchett, Morgan S., van Herwerden, Lynne, and Hobbs, Jean-Paul A. (2020) Keep your friends close and your anemones closer - ecology of the endemic wideband anemonefish, Amphiprion latezonatus. Environmental Biology of Fishes, 103. pp. 1513-1526.

Gainsford, Ashton, Jones, Geoffrey P., Hobbs, Jean-Paul A., Heindler, Franz Maximilian, and van Herwerden, Lynne (2020) Species integrity, introgression, and genetic variation across a coral reef fish hybrid zone. Ecology and Evolution, 10 (21). pp. 11998-12014.

Ramirez Flores, Omar, Birtles, Alastair, Pazmino, Diana, Zenger, Kyall R., and Van Herwerden, Lynne (2019) Dwarf minke whales from the South Pacific share a matrilineal lineage distinct from Balaenoptera acutorostrata acutorostrata and B. a. scammoni. Australian Mammalogy, 41 (2). pp. 231-240.

Rodríguez-Moreno, Melina, Zapata, Fernando A., Ramírez-Calero, Sandra, van Herwerden, Lynne, and Feldheim, Kevin (2019) Highly polymorphic microsatellite loci for the Acapulco damselfish, Stegastes acapulcoensis, and cross amplification in three congeneric species. Marine Biodiversity, 49 (1). pp. 481-486.

Jones, Karina, Jensen, Michael, Burgess, Graham, Leonhardt, Johanna, van Herwerden, Lynne, Hazel, Julia, Hamann, Mark, Bell, Ian, and Ariel, Ellen (2018) Closing the gap: mixed stock analysis of three foraging populations of green turtles (Chelonia mydas) on the Great Barrier Reef. PeerJ, 6. 5651.

Ma, Ka Yan, van Herwerden, Lynne, Newman, Stephen J., Berumen, Michael L., Choat, John Howard, Chu, Ka Hou, and de Mitcheson, Yvonne Sadovy (2018) Contrasting population genetic structure in three aggregating groupers (Percoidei: Epinephelidae) in the Indo-West Pacific: the importance of reproductive mode. BMC Evolutionary Biology, 18. 180.

Green, Madeline E., D'Anastasi, Blanche R., Hobbs, Jean-Paul A., Feldheim, Kevin, McAuley, Rory, Peverell, Stirling, Stapley, Jason, Johnson, Grant, Appleyard, Sharon A., White, William T., Simpfendorfer, Colin A., and van Herwerden, Lynne (2018) Mixed-marker approach suggests maternal philopatry and sex-biased behaviours of narrow sawfish Anoxypristis cuspidata. Endangered Species Research, 37. pp. 45-54.

Pazmiño, Diana A., Maes, Gregory E., Green, Madeline E., Simpfendorfer, Colin A., Hoyos-Padilla, E. Mauricio, Duffy, Clinton J.A., Meyer, Carl G., Kerwath, Sven E., Salinas-de-Leon, Pelayo, and van Herwerden, Lynne (2018) Strong trans-Pacific break and local conservation units in the Galapagos shark (Carcharhinus galapagensis) revealed by genome-wide cytonuclear markers. Heredity, 120. pp. 407-421.

Heindler, Franz M., Alajmi, Fahad, Huerlimann, Roger, Zeng, Chaoshu, Newman, Stephen J., Vamvounis, George, and van Herwerden, Lynne (2017) Toxic effects of polyethylene terephthalate microparticles and Di(2-ethylhexyl)phthalate on the calanoid copepod, Parvocalanus crassirostris. Ecotoxicology and Environmental Safety, 141. pp. 298-305.

Pazmiño, Diana A., Maes, Gregory E., Simpfendorfer, Colin A., Salinas-de-León, Pelayo, and van Herwerden, Lynne (2017) Genome-wide SNPs reveal low effective population size within confined management units of the highly vagile Galapagos shark (Carcharhinus galapagensis). Conservation Genetics, 18 (5). pp. 1151-1163.

Montanari, Stefano R., Hobbs, Jean-Paul, Pratchett, Morgan S., Bay, Line K., and van Herwerden, Lynne (2017) Naturally occurring hybrids of coral reef butterflyfishes have similar fitness compared to parental species. PLoS ONE, 12 (3). e0173212.

D'Anastasi, B.R., van Herwerden, L., Hobbs, J.A., Simpfendorfer, C.A., and Lukoschek, V. (2016) New range and habitat records for threatened Australian sea snakes raise challenges for conservation. Biological Conservation, 194. pp. 66-70.

Steinberg, Rosemary, van der Meer, Martin, Walker, Emily, Berumen, Michael L., Hobbs, Jean-Paul A., and van Herwerden, Lynne (2016) Genetic connectivity and self-replenishment of inshore and offshore populations of the endemic anemonefish, Amphiprion latezonatus. Coral Reefs, 35 (3). pp. 959-970.

Woodland, Walmiria, Motti, Cherie A., Irving, Paul, Van Herwerden, Lynne, and Vamvounis, George (2016) A colorimetric approach towards polycyclic aromatic hydrocarbon sensing. Australian Journal of Chemistry, 69 (11). CH16176. pp. 1292-1295.

Ma, Ka Yan, Craig, Matthew Thomas, Choat, John Howard, and van Herwerden, Lynne (2016) The historical biogeography of groupers: clade diversification patterns and processes. Molecular Phylogenetics and Evolution, 100. pp. 21-30.

Montanari, Stefano R., Hobbs, Jean-Paul A., Pratchett, Morgan S., and Van Herwerden, Lynne (2016) The importance of ecological and behavioural data in studies of hybridisation among marine fishes. Reviews in Fish Biology and Fisheries, 26 (2). pp. 181-198.

Gainsford, A., Van Herwerden, L., and Jones, G.P. (2015) Hierarchical behaviour, habitat use and species size differences shape evolutionary outcomes of hybridization in a coral reef fish. Journal of Evolutionary Biology, 28 (1). pp. 205-222.

Veilleux, Heather D., Ryu, Taewoo, Donelson, Jennifer M., Van Herwerden, Lynne, Seridi, Loqmane, Ghosheh, Yanal, Berumen, Michael L., Leggat, William, Ravasi, Timothy, and Munday, Philip L. (2015) Molecular processes of transgenerational acclimation to a warming ocean. Nature Climate Change, 5. pp. 1074-1078.

van der Meer, M.H., Berumen, M.L., Hobbs, J.-P.A., and van Herwerden, L. (2015) Population connectivity and the effectiveness of marine protected areas to protect vulnerable, exploited and endemic coral reef fishes at an endemic hotspot. Coral Reefs, 34 (2). pp. 393-402.

Hodge, Jennifer R., Van Herwerden, Lynne , and Bellwood, David R. (2014) Temporal evolution of coral reef fishes: global patterns and disparity in isolated locations. Journal of Biogeography, 41 (11). pp. 2115-2127.

Montanari, Stefano R., Hobbs, Jean-Paul A., Pratchett, Morgan S., Bay, Line K., and Van Herwerden, Lynne (2014) Does genetic distance between parental species influence outcomes of hybridization among coral reef butterflyfishes? Molecular Ecology, 23 (11). pp. 2757-2770.

von der Heyden, Sophie, Beger, Maria, Toonen, Robert J., van Herwerden, Lynne, Juinio-Meñez, Marie Antonette, Ravago-Gotanco, Rachel, Fauvelot, Cecile, and Bernardi, Giacomo (2014) The application of genetics to marine management and conservation: examples from the Indo-Pacific. Bulletin of Marine Science, 90 (1). pp. 123-158.

Hobbs, Jean-Paul A., van Herwerden, Lynne, Pratchett, Morgan S., and Allen, Gerald R. (2014) Hybridisation among butterflyfishes. In: Pratchett , Morgan S., Berumen , Michael L., and Kapoor , B.G., (eds.) Biology of Butterflyfishes. CRC Press, Boca Raton, FL, USA, pp. 48-69.

Duchene, David, Klanten, Selma O., Munday, Philip L., Herler, Jürgen, and van Herwerden, Lynne (2013) Phylogenetic evidence for recent diversification of obligate coral-dwelling gobies compared with their host corals. Molecular Phylogenetics and Evolution, 69 (1). pp. 123-132.

Hodge, Jennifer R., Read, Charmaine I., Bellwood, David R., and van Herwerden, Lynne (2013) Evolution of sympatric species: a case study of the coral reef fish genus Pomacanthus (Pomacanthidae). Journal of Biogeography, 40 (9). pp. 1676-1687.

Montanari, Stefano R., Gardner, Michael G., Hobbs, Jean-Paul A., Pratchett, Morgan S., Bay, Line K., and van Herwerden, Lynne (2013) Isolation and characterization of twenty microsatellite markers for the study of hybridization in butterflyfish of the genus Chaetodon. Conservation Genetics Resources, 5 (3). pp. 783-786.

Horne, John B., Momigliano, Paolo, van Herwerden, Lynne, and Newman, Stephen J. (2013) Murky waters: searching for structure in genetically depauperate blue threadfin populations of Western Australia. Fisheries Research, 146. pp. 1-6.

van der Meer, Martin H., Gardner, Michael G., Berumen, Michael L., Hobbs, Jean-Paul A., and Van Herwerden, Lynne (2013) Identification of seventeen microsatellite loci for conservation genetic studies of the endemic wrasse Coris bulbifrons. Conservation Genetics Resources, 5 (2). pp. 363-366.

van der Meer, Martin H., Horne, John B., Gardner, Michael G., Hobbs, Jean-Paul A., Pratchett, Morgan, and van Herwerden, Lynne (2013) Limited contemporary gene flow and high self-replenishment drives peripheral isolation in an endemic coral reef fish. Ecology and Evolution, 3 (6). pp. 1653-1666.

Hobbs, Jean-Paul, van Herwerden, Lynne, Jerry, Dean R., Jones, Geoffrey P., and Munday, Philip L. (2013) High genetic diversity in geographically remote populations of endemic and widespread coral reef angelfishes (genus: Centropyge). Diversity, 5 (1). pp. 39-50.

Horne, J.B., and van Herwerden, L. (2013) Long-term panmixia in a cosmopolitan Indo-Pacific coral reef fish and a nebulous genetic boundary with its broadly sympatric sister species. Journal of Evolutionary Biology, 26 (4). pp. 783-799.

Horne, John B., van Herwerden, Lynne, Abellana, Sheena, and Mcilwain, Jennifer L. (2013) Observations of migrant exchange and mixing in a coral reef fish metapopulation link scales of marine population connectivity. Journal of Heredity, 104 (4). pp. 532-546.

Veilleux, Heather D., Van Herwerden, Lynne, Cole, Nicholas J., Don, Emily K., De Santis, Christian, Dixson, Danielle L., Wenger, Amelia S., and Munday, Philip L. (2013) Otx2 expression and implications for olfactory imprinting in the anemonefish, Amphiprion percula. Biology Open, 2 (9). 24143277. pp. 907-915.

Harrison, Hugo B., Williamson, David H., Evans, Richard D., Almany, Glenn R., Thorrold, Simon R., Russ, Garry R., Feldheim, Kevin A., van Herwerden, Lynne, Planes, Serge, Srinivasan, Maya, Berumen, Michael L., and Jones, Geoffrey P. (2012) Larval export from marine reserves and the recruitment benefit for fish and fisheries. Current Biology, 22 (11). pp. 1023-1028.

Horne, John B., Momigliano, Paolo, Welch, David J., Newman, Stephen J., and Van Herwerden, Lynne (2012) Searching for common threads in threadfins: phylogeography of Australian polynemids in space and time. Marine Ecology Progress Series, 449. pp. 263-276.

Montanari, Stefano, Van Herwerden, Lynne, Pratchett, Morgan, Hobbs, Jean-Paul, and Fugedi, Anneli (2012) Reef fish hybridization: lessons learnt from butterflyfishes (genus Chaetodon). Ecology and Evolution, 2 (2). pp. 310-328.

Edmunds, Richard C., Smith-Keune, Carolyn, Van Herwerden, Lynne, Fulton, Chris J., and Jerry, Dean R. (2012) Exposing local adaptation: synergistic stressors elicit population-specific lactate dehydrogenase-B (ldh-b) expression profiles in Australian barramundi, Lates calcarifer. Aquatic Sciences, 74 (1). pp. 171-178.

van der Meer, Martin, Hobbs, Jean-Paul, Jones, Geoffrey, and Van Herwerden, Lynne (2012) Genetic Connectivity among and self-replenishment within island populations of a restricted range subtropical reef fish. PLoS ONE, 7 (11). e49660. pp. 1-11.

van der Meer, M.H., Jones, G.P., Hobbs, J.-P.A., and Van Herwerden, L. (2012) Historic hybridization and introgression between two iconic Australian anemonefish and contemporary patterns of population connectivity. Ecology and Evolution, 2 (7). pp. 1592-1604.

van der Meer, Martin H., Gardner, Michael G., Hobbs, Jean-Paul A., Jones, G.P., and van Herwerden, Lynne (2012) Identification of seventeen microsatellite markers for conservation genetic studies of the endemic anemonefish, Amphiprion mccullochi. Conservation Genetics Resources, 4 (2). pp. 247-250.

van der Meer, Martin H., Gardiner, Michael G., Hobbs, Jean-Paul A., Pratchett, Morgan, and van Herwerden, Lynne (2012) Identification of twenty one microsatellite loci for conservation genetic studies of the endemic butterflyfish Chaetodon tricinctus. Conservation Genetics, 4 (2). pp. 243-246.

Choat, John H., Klanten, Oya. S., Van Herwerden, Lynne, Robertson, D. Ross, and Clements, Kendall D. (2012) Patterns and processes in the evolutionary history of parrotfishes (Family Labridae). Biological Journal of the Linnean Society, 107 (3). pp. 529-557.

Hodge, Jennifer R., Read, Charmaine I., Van Herwerden, Lynne, and Bellwood, David R. (2012) The role of peripheral endemism in species diversification: evidence from the coral reef fish genus Anampses (Family: Labridae). Molecular Phylogenetics and Evolution, 62 (2). pp. 653-663.

Leis, Jeffrey M., Van Herwerden, Lynne, and Patterson, Heather (2011) Estimating connectivity in marine fish populations: what works best? In: Gibson, R.N., Atkinson, R.J.A., and Gordon, J.D.M., (eds.) Oceanography and Marine Biology: An Annual Review. Oceanography and Marine Biology: An Annual Review, 49 . CRC Press, Boca Raton, FL, USA, pp. 193-234.

Horne, John B., Momigliano, Paolo, Welch, David J., Newman, Stephen J., and van Herwerden, Lynne (2011) Limited ecological population connectivity suggests low demands on self-recruitment in a tropical inshore marine fish (Eleutheronema tetradactylum: Polynemidae). Molecular Ecology, 20 (11). pp. 2291-2306.

Veilleux, Heather D., van Herwerden, Lynne, Evans, Richard D. , Travers, Michael J. , and Newman, Stephen J. (2011) Strong genetic subdivision generates high genetic variability among eastern and western Australian populations of Lutjanus carponotatus (Richardson). Fisheries Research, 108 (1). pp. 74-80.

Horne, John B., Van Herwerden, Lynne, and Choat, J. Howard (2011) Just because the shoe fits doesn't mean you should wear it: complex evolutionary patterns in the reef fish genus Naso. In: Abstracts from Society for Integrative and Comparative Biology Annual Meeting. p. 1. From: Society for Integrative and Comparative Biology Annual Meeting, 3-7 January 2011, Salt Lake City, UT, USA.

Gaither, Michelle R., Bowen, Brian W., Bordenave, Tiane-Rae, Rocha, Luiz A., Newman, Stephen J., Gomez, Juan A., van Herwerden, Lynne, and Craig, Matthew T. (2011) Phylogeography of the reef fish Cephalopholis argus (Epinephelidae) indicates Pleistocene isolation across the indo-pacific barrier with contemporary overlap in the coral triangle. BMC Evolutionary Biology, 11. 189. pp. 1-15.

Newman, S.J., Pember, M.B., Rome, B.M., Mitsopoulos, G.E.A., Skepper, C.L., Allsop, Q., Saunders, T., Ballagh, A.C., van Herwerden, L., Garrett, R.N., Gribble, N.A., Stapley, J.M., Meeuwig, J.J., Moore, B.R., and Welch, D.J. (2011) Stock structure of blue threadfin Eleutheronema tetradactylum across northern Australia as inferred from stable isotopes in sagittal otolith carbonate. Fisheries Management and Ecology, 18 (3). pp. 246-257.

Newman, Stephen J., Allsop, Quentin, Ballagh, Aaron C., Garrett, Rod N., Gribble, Neil, Meeuwig, Jessica J., Mitsopoulos, Gabby E.A., Moore, Bradley R., Pember, Matthew B., Rome, Ben M., Saunders, Thor, Skepper, Craig L., Stapley, Jason M., van Herwerden, Lynne, and Welch, David J. (2010) Variation in stable isotope (δ18O and δ13C) signatures in the sagittal otolith carbonate of king threadfin, Polydactylus macrochir across northern Australia reveals multifaceted stock structure. Journal of Experimental Marine Biology and Ecology, 396 (1). pp. 53-60.

Welch, D.J., Ballagh, A., Newman, S.J., Lester, R.J., Moore, B., van Herwerden, L., Horne, J., Allsop, Q., Saunders, T., Stapley, J., and Gribble, N.A. (2010) Defining the Stock Structure of Northern Australia's Threadfin Salmon Species. Report. James Cook University, Townsville, QLD, Australia.

Winters, Kate L., van Herwerden, Lynne, Choat, J. Howard, and Robertson, D.R. (2010) Phylogeography of the Indo-Pacific parrotfish Scarus psittacus: isolation generates distinctive peripheral populations in two oceans. Marine Biology, 157 (8). pp. 1679-1691.

Hobbs, Jean-paul, and Van Herwerden, Lynne (2010) Evolutionary novelty at range edges for coral reef organisms. Science, 328 (5985). p. 1558.

Bellwood, D.R., Klanten, S., Cowman, P.F., Pratchett, M.S., Konow, N., and Van Herwerden, L. (2010) Evolutionary history of the butterflyfishes (f: Chaetodontidae) and the rise of coral feeding fishes. Journal of Evolutionary Biology, 23 (2). pp. 335-349.

Evans, R.D., Van Herwerden, L., Russ, G.R., and Frisch, A.J. (2010) Strong genetic but not spatial subdivision of two reef fish species targeted by fishers on the Great Barrier Reef. Fisheries Research, 102 (1-2). pp. 16-25.

Farnsworth, Claire A, Bellwood, David, and Van Herwerden, Lynne (2010) Genetic structure across the GBR: evidence from short-lived gobies. Marine Biology, 157 (5). pp. 945-953.

Edmunds, Richard C., Van Herwerden, Lynne, and Fulton, Christopher J. (2010) Population-specific locomotor phenotypes are displayed by barramundi, Lates calcarifer, in response to thermal stress. Canadian Journal of Fisheries and Aquatic Sciences, 67 (7). pp. 1068-1074.

van Herwerden, Lynne, Aspden, William J., Newman, Stephen J., Pegg, Graham G., Briskey, Leica, and Sinclair, William (2009) A comparison of the population genetics of Lethrinus miniatus and Lutjanus sebae from the east and west coasts of Australia: evidence for panmixia and isolation. Fisheries Research, 100 (2). pp. 148-155.

Edmunds, Richard C., Hillersøy, Grethe, Momigliano, Paolo, and Van Herwerden, Lynne (2009) Classic approach revitalizes genomics: complete characterization of a candidate gene for thermal adaptation in two coral reef fishes. Marine Genomics, 2 (3-4). pp. 215-222.

Cowman, Peter F., Bellwood, David R., and van Herwerden, Lynne (2009) Dating the evolutionary origins of wrasse lineages (Labridae) and the rise of trophic novelty on coral reefs. Molecular Phylogenetics and Evolution, 52 (3). pp. 621-631.

van Herwerden, Lynne, Choat, J. Howard, Newman, Stephen J., Leray, Mattieu, and Hillersoy, Grethe (2009) Complex patterns of population structure and recruitment of Plectropomus leopardus (Pisces: Epinephelidae) in the Indo-West Pacific: implications for fisheries management. Marine Biology, 156 (8). pp. 1595-1607.

Hobbs, Jean-Paul A., Frisch, Ashley J., Allen, Gerald R., and van Herwerden, Lynne (2009) Marine hybrid hotspot at Indo-Pacific biogeographic border. Biology Letters, 5 (2). pp. 258-261.

Puill-Stephan, Eneour, Willis, Bette L., van Herwerden, Lynne, and van Oppen, Madeleine JH (2009) Chimerism in wild adult populations of the broadcast spawning coral Acropora millepora on the Great Barrier Reef. PLoS ONE, 4 (1). p. 7751.

Edmunds, Richard C., van Herwerden, Lynne, Smith-Keune, Carolyn, and Jerry, Dean R. (2009) Comparative characterization of a temperature responsive gene (lactate dehydrogenase-B, ldh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus. International Journal of Biological Sciences, 5 (6). pp. 558-569.

Edmunds, Richard C., van Herwerden, Lynne, Smith-Keune, Carolyn, and Jerry, Dean R. (2009) Comparative characterization of a temperature responsive gene (lactatedehydrogenase-B, ldh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus. International Journal of Biological Sciences, 5 (6). pp. 558-569.

Horne, John B., McIlwain, Jennifer L., and Van Herwerden, Lynne (2009) Isolation of 15 new polymorphic microsatellite markers from the blue-spine unicornfish Naso unicornis. Conservation Genetics Resources, 2. pp. 1-4.

Horne, John B., van Herwerden, Lynne, Choat, J. Howard, and Robertson, D.R. (2008) High population connectivity across the Indo-Pacific: congruent lack of phylogeographic structure in three reef fish congeners. Molecular Phylogenetics and Evolution, 49 (2). pp. 629-638.

Ceccarelli, D., Choat, J.H., Ayling, A., Richards, Z.T., Van Herwerden, L., Ewel, G.D., Hobbs, J-P., and Cuff, B. (2008) Coringa-Herald National Nature Reserve Marine Survey 2007. Report. Department of the Environment, Water, Heritage and the Arts, Canberra, ACT, Australia.

Hobbs, J.P., Choat, J.H., Robbins, W.D., Van Herwerden, Lynne, Feary, D.A., and Ayling, Anthony (2008) Unique fish assemblages at world's southernmost oceanic coral reefs, Elizabeth and Middleton Reefs, Tasman Sea, Australia. Coral Reefs, 27 (1). p. 15.

Marie, A.D., van Herwerden, L., Choat, J.H., and Hobbs, J-P.A. (2007) Hybridization of reef fishes at the Indo-Pacific biogeographic barrier: a case study. Coral Reefs, 26 (4). pp. 841-850.

Munkres, Katherine P., Bay, Line K., Jerry, Dean R., McCormick, Mark I., and van Herwerden, Lynne (2007) Development and characterization of microsatellite markers for parentage analyses of the coral reef damselfish (Pomacentrus amboinensis: Pomacentridae). Conservation Genetics, 8 (4). pp. 987-990.

Klanten, Selma, Choat, J. Howard, and van Herwerden, Lynne (2007) Extreme genetic diversity and temporal rather than spatial partitioning in a widely distributed coral reef fish. Marine Biology, 150 (4). pp. 659-670.

Yaakub, S.M., Bellwood, D.R., and van Herwerden, L. (2007) A rare hybridization event in two common Caribbean wrasses (genus Halichoeres; family Labridae). Coral Reefs, 26 (3). pp. 597-602.

van Herwerden, L., Choat, J.H., Dudgeon, C.L., Carlos, G., Newman, S.J., Frisch, A., and van Oppen, M. (2006) Contrasting patterns of genetic structure in two species of the coral trout Plectropomus (Serranidae) from east and west Australia: introgressive hybridisation or ancestral polymorphisms. Molecular Phylogenetics and Evolution, 41 (2). pp. 420-435.

van Herwerden, Lynne, McIlwain, Jenny, Al-Oufi, Hamed, Al-Amry, Wahida, and Reyes, Alejandro (2006) Development and application of microsatellite markers for Scomberomorus commerson (Perciformes; Teleostei) to a population genetic study of Arabian Peninsula stocks. Fisheries Research, 79 (3). pp. 258-266.

Yaakub, Siti M., Bellwood, David R., van Herwerden, Lynne, and Walsh, Fenton M. (2006) Hybridization in coral reef fishes: introgression and bi-directional gene exchange in Thalassoma (family Labridae). Molecular Phylogenetics and Evolution, 40 (1). pp. 84-100.

Frisch, A., and van Herwerden, L. (2006) Field and experimental studies of hybridization between coral trouts, Plectropomus leopardus and Plectropomus maculatus (Serranidae), on the Great Barrier Reef, Australia. Journal of Fish Biology, 68 (4). pp. 1013-1025.

Read, Charmine I., Bellwood, David R., and van Herwerden, Lynne (2006) Ancient origins of Indo-Pacific coral reef fish biodiversity: a case study of the leopard wrasses (Labridae: Macropharyngodon). Molecular Phylogenetics and Evolution, 38 (3). pp. 808-819.

van Herwerden, L., and Doherty, P.J. (2006) Contrasting genetic structures across two hybrid zones of a tropical reef fish, Acanthochromis polyacanthus (Bleeker 1855). Journal of Evolutionary Biology, 19 (1). pp. 239-252.

Hoolihan, John P., Anandh, Prem, and van Herwerden, Lynne (2006) Mitochondrial DNA analyses of narrow-barred Spanish mackerel (Scomberomorus commerson) suggest a single genetic stock in the ROPME sea area (Arabian Gulf, Gulf of Oman, and Arabian Sea). ICES Journal of Marine Science, 63 (6). pp. 1066-1074.

Messmer, Vanessa, Jones, Geoffrey P., van Herwerden, Lynne, and Munday, Philip L. (2005) Genetic and ecological characterisation of colour dimorphism in a coral reef fish. Environmental Biology of Fishes, 74 (2). pp. 175-183.

Messmer, Vanessa, van Herwerden, Lynne, Munday, Philip L., and Jones, Geoffrey P. (2005) Phylogeography of colour polymorphism in the coral reef fish Pseudochromis fuscus, from Papua New Guinea and the Great Barrier Reef. Coral Reefs, 24. pp. 392-402.

Bellwood, David R., van Herwerden, Lynne, and Konow, Nicolai (2004) Evolution and biogeography of marine angelfishes (Pisces: Pomacanthidae). Molecular Phylogenetics and Evolution, 33 (1). pp. 140-155.

Munday, Philip L., van Herwerden, Lynne, and Dudgeon, Christine L. (2004) Evidence for sympatric speciation by host shift in the sea. Current Biology, 14 (16). pp. 1498-1504.

Klanten, Selma O., van Herwerden, Lynne, Choat, J.Howard, and Blair, David (2004) Patterns of lineage diversification in the Genus Naso (Acanthuridae). Molecular Phylogenetics and Evolution, 32 (1). pp. 221-235.

Bay, L.K., Choat, J.H., van Herwerden, L., and Robertson, D.R. (2004) High genetic diversities and complex genetic structure in an Indo-Pacific tropical reef fish (Chlorurus sordidus): evidence of an unstable evolutionary past? Marine Biology, 144 (4). pp. 757-767.

Klanten, Selma O., Van Herwerden, Lynne, and Choat, J. Howard (2003) Acquiring reef fish DNA sequences from formalin-fixed museum specimens. Bulletin of Marine Science, 73 (3). pp. 771-776.

van Herwerden, L., Benzie, J., and Davies, Campbell (2003) Microsatellite variation and population genetic structure of the red throat emperor on the Great Barrier Reef. Journal of Fish Biology, 62 (5). pp. 987-999.

van Herwerden, Lynne, Caley, M. Julian, and Blair, David (2003) Regulatory motifs are present in the ITS1 of some flatworm species. Journal of Experimental Zoology Part B: molecular and developmental evolution, 296 (1). pp. 80-86.

Van Herwerden, L., Davies, C.R., and Choat, J.H. (2002) Phylogenetic and evolutionary perspectives of the Indo-Pacific grouper Plectropomus species on the Great Barrier Reef, Australia. Journal of Fish Biology, 60 (6). pp. 1591-1596.

Van Herwerden, Lynne, Benzie, John, Peplow, Lesa, and Davies, Campbell (2001) Microsatellite markers for coral trout (Plectropomus laevis) and red throat emperor (Lethrinus miniatus) and their utility in other species of reef fish. Molecular Ecology, 9 (11). pp. 1929-1931.

Van Herwerden, Lynne, Blair, David, and Agatsuma, Takeshi (2000) Multiple lineages of the mitochondrial gene NADH dehydrogenase subunit 1 (ND1) in parasitic helminths: implications for molecular evolutionary studies of facultatively anaerobic eukaryotes. Journal of Molecular Evolution, 51 (4). pp. 339-352.

Van Herwerden, Lynne, Gasser, Robin B., and Blair, David (2000) ITS-1 ribosomal DNA sequence variants are maintained in different species and strains of Echinococcus. International Journal for Parasitology, 30 (2). pp. 157-169.

Van Herwerden, Lynne, Blair, David, and Agatsuma, Takeshi (1999) Genetic diversity in parthenogenetic triploid Paragonimus westermani. International Journal for Parasitology, 29 (9). pp. 1477-1482.

van Herwerden, Lynne, Blair, David, and Agatsuma, Takeshi (1999) Intra- and interindividual variation in ITS1 of Paragonimus westermani (Trematoda: Digenea) and related species: implications for phylogenetic studies. Molecular Phylogenetics and Evolution, 12 (1). pp. 67-73.

Van Herwerden, L., Blair, D., and Agatsuma, T. (1998) Intra- and inter-specific variation in nuclear ribosomal internal transcribed spacer 1 of the Schistosoma japonicum species complex. Parasitology, 116 (4). pp. 311-317.

van Herwerden, Lynne (1998) The trematode genera Paragonimus and Schistosoma in East Asia: molecular evolution, phylogeny and biogeography. PhD thesis, James Cook University.

Kamitani, Atsushi, Wong, Zilla Y.H., Dickson, Phillip, van Herwerden, Lynne, Raven, Joan, Forbes, Andrew B., Abramson, Michael J., Walters, E. Haydn, and Harrap, Stephen B. (1997) Absence of genetic linkage of chromosome 5q31 with asthma and atopy in the general population. Thorax, 52 (9). pp. 816-817.

Wong, Zilla Y.H., Tsonis, Dina, van Herwerden, Lynne, Raven, Joan, Forbes, Andrew, Abramson, Michael J., Walters, E. Haydn, and Harrap, Stephen B. (1997) Linkage analysis of bronchial hyperreactivity and atopy with chromosome 11q13. Electrophoresis, 18 (9). pp. 1641-1645.

Blair, David, van Herwerden, Lynne, Hirai, Hirohisa, Taguchi, Takahiro, Habe, Shigehisa, Hirata, Mizuki, Lai, Karen, Upatham, Suchart, and Agatsuma, Takeshi (1997) Relationships between Schistosoma malayensis and other Asian schistosomes deduced from DNA sequences. Molecular and Biochemical Parasitology, 85 (2). pp. 259-263.

van Herwerden, Lynne, Harrap, Stephen B., Wong, Zilla Y.H., Abrahamson, Michael J., Kutin, Jozica J., Forbes, Andrew B., Raven, Joan, Lanigan, Anna, and Walters, E. Haydn (1995) Linkage of high-affinity IgE receptor gene with bronchial hyperreactivity, even in absence of atopy. Lancet, 346 (8985). pp. 1262-1265.

Reardon, W., van Herwerden, L., Rose, C., Jones, B., Malcolm, S., and Winter, R.M. (1994) Crouzon syndrome is not linked to craniosynostosis loci at 7p and 5qter. Journal of Medical Genetics, 31 (3). pp. 219-221.

van Herwerden, Lynne, Rose, Charlotte S.P., Reardon, William, Brueton, Louise A., Weissenbach, Jean, Malcolm, Sue, and Winter, Robin M. (1994) Evidence for locus heterogeneity in acrocephalosyndactyly: a refined localization for the Saethre-Chotzen syndrome locus on distal chromosome 7p-- and exclusion of Jackson-Weiss syndrome from craniosynostosis loci on 7p and 5q. American Journal of Human Genetics, 54. pp. 669-674.

Chotai, Kokila A., Brueton, Louise A., van Herwerden, Lyn, Garrett, Christine, Hinkel, Georg K., Schinzel, Albert, Mueller, Robert F., Speleman, Frank, and Winter, Robin M. (1994) Six cases of 7p deletion: clinical, cytogenetic, and molecular studies. American Journal of Medical Genetics, 51 (3). pp. 270-276.

Chotai, K.A., Brueton, L., van Herwerden, L., and Winter, R.M. (1992) Eight cases of 7p deletion: clinical features, cytogenetic findings, and molecular studies. Journal of Medical Genetics, 29 (4). pp. 283-284.

Brueton, Louise A., Chotai, Kokila A., van Herwerden, Lynne, Schinzel, Albert, and Winter, Robin M. (1992) The acrocallosal syndrome and Greig syndrome are not allelic disorders. Journal of Medical Genetics, 29 (9). pp. 635-637.

Brueton, L.A., van Herwerden, L., Chotai, K.A., and Winter, R.M. (1992) The mapping of a gene for craniosynostosis: evidence for linkage of the Saethre-Chotzen syndrome to distal chromosome 7p. Journal of Medical Genetics, 29 (10). pp. 681-685.

van Herwerden, Lynne, and Griffiths, C.L. (1991) Human recreational activity along the northwestern shores of False Bay. Transactions of the Royal Society of South Africa, 47 (4-5). pp. 737-748.

van Herwerden, L. (1989) Collection of mussel worms Pseudonereis variegata for bait: a legislative anachronism. South African Journal of Marine Science, 8 (1). pp. 363-366.

van Herwerden, L., Griffiths, C.L., Bally, R., Blaine, M., and du Plessis, C. (1989) Patterns of shore utilization in a metropolitan area: the Cape Peninsula, South Africa. Ocean & Shoreline Management, 12 (4). pp. 331-346.

van Herwerden, L., and Bally, R. (1989) Shoreline utilisation in a rapidly growing coastal metropolitan area: the Cape Peninsula, South Africa. Ocean & Shoreline Management, 12 (2). pp. 169-178.