Article

Lyu, Shiyang, Adegboye, Oyelola, Adhinugraha, kiki, Emeto, Theophilus I., and Tanier, David (2024) Analysing the impact of comorbid conditions and media coverage on online symptom search data: a novel AI-based approach for COVID-19 tracking. Infectious Diseases. (In Press)

Castellanos Reynosa, Maria Eugenia, Caal, Maria Eugenia, Mercado, Danicela, Medina, Narda, Pérez, Juan Carlos, Emeto, Theophilus I., and Arathoon, Eduardo (2024) Clinical characteristics, diagnosis, treatment and outcomes of patients living with HIV and co-infected with tuberculosis and histoplasmosis: a 5-y retrospective case series. Transactions of the Royal Society of Tropical Medicine and Hygiene. trad104. (In Press)

Kuriakose, Aster, Arachchige, Subodhini Puhambugoda, Emeto, Theophilus I., Hiskens, Matthew I., and Hariharan, Gopakumar (2024) Descriptive feedback with targeted education to improve telephonic escalation of care: a simulation-based study. BMC Medical Education, 24. 281.

GBD 2021 Nervous System Disorders Collaborators, (2024) Global, regional, and national burden of disorders affecting the nervous system, 1990–2021: a systematic analysis for the Global Burden of Disease Study 2021. Lancet Neurology, 23 (4). pp. 344-381.

Lyu, Shiyang, Adegboye, Oyelola, Adhinugraha, Kiki, Emeto, Theophilus I., and Taniar, David (2023) Unlocking Insights: Analysing COVID-19 Lockdown Policies and Mobility Data in Victoria, Australia, through a Data-Driven Machine Learning Approach. Data, 9 (1). 3.

Kabantiyok, Dennis, Gyang, Moses, Agada, Godwin, Ogundeji, Alice, Nyam, Daniel, Uhiara, Uchechi, Abiayi, Elmina, Dashe, Yakubu, Ngulukun, Sati, Muhammad, Maryam, Adegboye, Oyelola A., and Emeto, Theophilus I. (2023) Analysis of Retrospective Laboratory Data on the Burden of Bacterial Pathogens Isolated at the National Veterinary Research Institute Nigeria, 2018–2021. Veterinary Sciences, 10 (8). 505.

Gorasso, Vanessa, Morgado, Joana Nazaré, Charalampous, Periklis, Pires, Sara M., Haagsma, Juanita A., Santos, João Vasco, Idavain, Jane, Ngwa, Che Henry, Noguer, Isabel, Padron-Monedero, Alicia, Sarmiento, Rodrigo, Pinheiro, Vera, Von der Lippe, Elena, Jakobsen, Lea Sletting, Devleesschauwer, Brecht, Plass, Dietrich, and COST Action CA18218 participants, (2023) Burden of disease attributable to risk factors in European countries: a scoping literature review. Archives of Public Health, 81. 116.

Charalampous, Periklis, Haagsma, Juanita A., Jakobsen, Lea S., Gorasso, Vanessa, Noguer, Isabel, Padron-Monedero, Alicia, Sarmiento, Rodrigo, Santos, João Vasco, McDonald, Scott A., Plass, Dietrich, Wyper, Grant M.A., Assunção, Ricardo, von der Lippe, Elena, Ádám, Balázs, AlKerwi, Ala'a, Arabloo, Jalal, Baltazar, Ana Lúcia, Bikbov, Boris, Borrell-Pages, Maria, Brus, Iris, Burazeri, Genc, Chaintoutis, Serafeim C., Chen-Xu, José, Chkhaberidze, Nino, Cilovic-Lagarija, Seila, Corso, Barbara, Cuschieri, Sarah, Di Bari, Carlotta, Dopelt, Keren, Economou, Mary, Emeto, Theophilus I., Fantke, Peter, Fischer, Florian, Freitas, Alberto, García-González, Juan Manuel, Gazzelloni, Federica, Gissler, Mika, Gkitakou, Artemis, Gulmez, Hakan, Gunes, Sezgin, Haller, Sebastian, Haneef, Romana, Hincapié, Cesar A., Hynds, Paul, Idavain, Jane, Ilic, Milena, Ilic, Irena, Isola, Gaetano, Kabir, Zubair, Kamusheva, Maria, Kolkhir, Pavel, Konar, Naime Meriç, Kostoulas, Polychronis, Kulimbet, Mukhtar, La Vecchia, Carlo, Lauriola, Paolo, Levi, Miriam, Majer, Marjeta, Mechili, Enkeleint A., Monasta, Lorenzo, Mondello, Stefania, Muñoz Laguna, Javier, Nena, Evangelia, Ng, Edmond S. W., Nguewa, Paul, Niranjan, Vikram, Nola, Iskra Alexandra, O'Caoimh, Rónán, Obradović, Marija, Pallari, Elena, Peyroteo, Mariana, Pinheiro, Vera, Pranjic, Nurka, Reina Ortiz, Miguel, Riva, Silvia, Santoso, Cornelia Melinda Adi, Santric Milicevic, Milena, Schmitt, Tugce, Speybroeck, Niko, Sprügel, Maximilian, Steiropoulos, Paschalis, Stevanovic, Aleksandar, Thygesen, Lau Caspar, Tozija, Fimka, Unim, Brigid, Bektaş Uysal, Hilal, Varga, Orsolya, Vasic, Milena, Vieira, Rafael José, Yigit, Vahit, Devleesschauwer, Brecht, and Pires, Sara M. (2023) Burden of infectious disease studies in Europe and the United Kingdom: a review of methodological design choices. Epidemiology and Infection, 151. e19.

Wockner, R.S., Seethala, R.R., Emeto, T.I., McCaul, J.A., and Subramaniam, S.S. (2023) Epithelial–myoepithelial carcinoma of the maxillofacial and sinonasal region: a systematic review of presenting characteristics, treatment modalities, and associated outcomes. International Journal of Oral and Maxillofacial Surgery, 52 (1).

Mensah, George A., Fuster, Valentin, Murray, Christopher J. L., Roth, Gregory A., Global Burden of Cardiovascular Diseases and Risks Collaborators, , [Emeto, Theophilus I.], [Franklin, Richard Charles], [Obamiro, Kehinde O.], [Peden, Amy E.], and [Seidu, Abdul-Aziz] (2023) Global Burden of Cardiovascular Diseases and Risks, 1990-2022. Journal of the American College of Cardiology, 82 (25). pp. 2350-2473.

GBD 2019 IMID Collaborators, (2023) Global, regional, and national incidence of six major immune-mediated inflammatory diseases: findings from the global burden of disease study 2019. EClinicalMedicine, 64. 102193.

Hu, Marcus, Kim, Anna N.H., Emeto, Theophilus I., Collins, Michael, Chopping, Andrea, and Lin, Charles (2023) Metastatic cutaneous squamous cell carcinoma to the parotid: Adjuvant radiotherapy and treatment outcomes. Journal of Medical Radiation Sciences, 70 (2). pp. 161-170.

Lawal, Saheed Akinmayowa, Okunlola, David Aduragbemi, Adegboye, Oyelola A., and Adedeji, Isaac A. (2023) Mother's education and nutritional status as correlates of child stunting, wasting, underweight, and overweight in Nigeria: Evidence from 2018 Demographic and Health Survey. Nutrition and Health. (In Press)

McNeil, Thomas, Zhang, Frank, Moffatt, Samuel, Emeto, Theophilus I., and Tucker, Emily (2023) Nosocomial COVID‐19 infection in the era of vaccination and antiviral therapy. Internal Medicine Journal. (In Press)

Abdel-Latif, Mohamed E., Adegboye, Oyelola, Nowak, Gen, Elfaki, Faiz, Bajuk, Barbara, Glass, Kathryn, and Harley, David (2023) Variation in hospital morbidities in an Australian neonatal intensive care unit network. Archives of Disease in Childhood: fetal and neonatal. (In Press)

Nath, Karthik, Boles, Rachael, Emeto, Theophilus I., Adegboye, Oyelola A., Castellanos, Maria Eugenia, Alele, Faith O., Pearce, Jessica, Ewart, Barbara, Ward, Kayla, Lai, Hock, Morris, Edward, Hodges, Georgina, and Irving, Ian (2023) A comprehensive study of the epidemiology of haematological malignancies in North Queensland. Internal Medicine Journal, 53 (4). pp. 540-549.

Seidu, Abdul-Aziz, Malau-Aduli, Bunmi S., McBain-Rigg, Kristin, Malau-Aduli, Aduli E.O., and Emeto, Theophilus I. (2023) A mixed-methods study of the awareness and functionality of sexual and reproductive health services among persons with disability in Ghana. Reproductive Health, 20. 162.

Bailey, Liam D., van de Pol, Martijn, Adriaensen, Frank, Arct, Aneta, Barba, Emilio, Bellamy, Paul E., Bonamour, Suzanne, Bouvier, Jean Charles, Burgess, Malcolm D., Charmantier, Anne, Cusimano, Camillo, Doligez, Blandine, Drobniak, Szymon M., Dubiec, Anna, Eens, Marcel, Eeva, Tapio, Ferns, Peter N., Goodenough, Anne E., Hartley, Ian R., Hinsley, Shelley A., Ivankina, Elena, Juškaitis, Rimvydas, Kempenaers, Bart, Kerimov, Anvar B., Lavigne, Claire, Leivits, Agu, Mainwaring, Mark C., Matthysen, Erik, Nilsson, Jan Åke, Orell, Markku, Rytkönen, Seppo, Senar, Juan Carlos, Sheldon, Ben C., Sorace, Alberto, Stenning, Martyn J., Török, János, van Oers, Kees, Vatka, Emma, Vriend, Stefan J.G., and Visser, Marcel E. (2022) Bird populations most exposed to climate change are less sensitive to climatic variation. Nature Communications, 13. 2112.

Alizzi, Mohammed, Rathnayake, Romesh, Sivbalan, Pirathaban, Emeto, Theophilus I., and Norton, Robert (2022) Group B Streptococcal bacteraemia - changing trends in a tropical region of Australia. Internal Medicine Journal, 52 (5). pp. 800-807.

Eisen, Damon P., Hamilton, Elizabeth, Bodilsen, Jacob, Køster-Rasmussen, Rasmus, Stockdale, Alexander J,, Miner, James, Nielsen, Henrik, Dzupova, Olga, Sethi, Varun, Copson, Rachel K., Harings, Miriam, and Adegboye, Oyelola A. (2022) Longer than 2 hours to antibiotics is associated with doubling of mortality in a multinational community-acquired bacterial meningitis cohort. Scientific Reports, 12. 672.

Cavalieri, Jo, and Das, Sourav (2022) Modification of a GnRH-based system to synchronise oestrus in Bos indicus cattle improves pregnancy rates to AI in heifers but not cows. Australian Veterinary Journal, 100 (4). pp. 162-171.

Fay, Rémi, Authier, Matthieu, Hamel, Sandra, Jenouvrier, Stéphanie, van de Pol, Martijn, Cam, Emmanuelle, Gaillard, Jean‐Michel, Yoccoz, Nigel G., Acker, Paul, Allen, Andrew, Aubry, Lise M., Bonenfant, Christophe, Caswell, Hal, Coste, Christophe F.D., Larue, Benjamin, Le Cœur, Christie, Gamelon, Marlène, Macdonald, Kaitlin R., Moiron, Maria, Nicol‐Harper, Alex, Pelletier, Fanie, Rotella, Jay, Teplitsky, Celine, Touzot, Laura, Wells, Caitlin, and Sæther, Bernt‐Erik (2022) Quantifying fixed individual heterogeneity in demographic parameters: performance of correlated random effects for Bernoulli variables. Methods in Ecology and Evolution, 13 (1). pp. 91-104.

Van Irsel, Jurrian, Frauendorf, Magali, Ens, Bruno, Van De Pol, Martijn, Troost, Karen, Oosterbeek, Kees, De Kroon, Hans, Jongejans, Eelke, and Allen, Andrew M. (2022) State-dependent environmental sensitivity of reproductive success and survival in a shorebird. Ibis, 164 (3). pp. 692-710.

Mansell, Victoria E., Emeto, Theophilus I., and Davis, Stephanie (2022) Time taken by individuals with respiratory symptoms to present to primary care: a descriptive study of assessments at Australian General Practitioner-led respiratory clinics. Communicable Diseases Intelligence, 46.

Win, Kyi T.H., Thomas, Benjamin, Emeto, Theophilus I., Fairley, Lachlan, Thavarajah, Harshithaa, Vangaveti, Venkat N., Danda, Nita, Wai, Htet, New, Ru, Munoz, Miguel, Basu, Sonali, and Yadav, Raibhan (2022) A comparison of clinical characteristics and outcomes between Indigenous and non-Indigenous patients presenting to Townsville Hospital Emergency Department with chest pain. Heart, Lung and Circulation, 31 (2). pp. 183-193.

Wibawa, Pierre, Matta, Gabriel, Das, Sourav, Eratne, Dhamidu, Farrand, Sarah, Desmond, Patricia, Velakoulis, Dennis, and Gaillard, Frank (2021) Bringing psychiatrists into the picture: automated measurement of regional MRI brain volume in patients with suspected dementia. Australian and New Zealand Journal of Psychiatry, 55 (8). pp. 799-808.

Frauendorf, Magali, Allen, Andrew M., Verhulst, Simon, Jongejans, Eelke, Ens, Bruno J., van der Kolk, Henk Jan, de Kroon, Hans, Nienhuis, Jeroen, and van de Pol, Martijn (2021) Conceptualizing and quantifying body condition using structural equation modelling: a user guide. Journal of Animal Ecology, 90 (11). pp. 2478-2496.

van de Pol, Martijn, and Brouwer, Lyanne (2021) Cross-lags and the unbiased estimation of life-history and demographic parameters. Journal of Animal Ecology, 90 (10). pp. 2234-2253.

Brown, Simon, Cooke, Delwyn, and Blackwell, Leonard (2020) Expressing the quantity of urinary analytes: a discussion of some issues arising from the monitoring of the menstrual cycle. Open Health, 1 (1). pp. 1-20.

Adegboye, Oyelola A., Adekunle, Adeshina I., and Gayawan, Ezra (2020) Early transmission dynamics of Novel Coronavirus (COVID-19) in Nigeria. International Journal of Environmental Research and Public Health, 17 (9). 3054.

Adegboye, Oyelola, Tomoki, Fijjii, and Leung, Denis H.Y. (2020) Refusal bias in HIV data from the Demographic and Health Surveys: evaluation, critique and recommendations. Statistical Methods in Medical Research, 29 (3). pp. 811-826.

Adegboye, O., Adegboye, M., Saffary, T., Emeto, T., and Elfaki, F. (2020) The increased risk of middle east respiratory syndrome coronavirus: effects of the interaction between temperature variability and dromedary exposure. International Journal of Infectious Diseases, 101 (S1). 0591. pp. 247-248.

Gayawan, Ezra, Awe, Olushina O, Oseni, Bamidele M., Uzochukwu, Ikemefuna C., Adekunle, Adeshina, Samuel, Gbemisola, Eisen, Damon P., and Adegboye, Oyelola A. (2020) The spatio-temporal epidemic dynamics of COVID-19 outbreak in Africa. Epidemiology and Infection, 148. e212.

Cooke, Delwyn, Blackwell, Leonard, and Brown, Simon (2019) On the distribution of urine output in normally cycling women. Biometrical Letters, 56 (1). pp. 71-87.

Borchering, Rebecca K., Huang, Angkana T., Mier-y-Teran-Romero, Luis, Rojas, Diana P., Rodriguez-Barraquer, Isabel, Katzelnick, Leah C., Martinez, Silvio D., King, Gregory D., Cinkovich, Stephanie C., Lessler, Justin, and Cummings, Derek A.T. (2019) Impacts of Zika emergence in Latin America on endemic dengue transmission. Nature Communications, 10. 5730.

Brown, Simon, Cooke, Delwyn G., and Blackwell, Leonard F. (2018) Does the use of ovulation monitors really increase pregnancy rates? Some things women should know. Applied Medical Informatics, 40 (3-4). pp. 81-89.

Adegboye, Oyelola, and Elfaki, Faiz (2018) Network analysis of MERS coronavirus within households, communities, and hospitals to identify most centralized and super-spreading in the Arabian Peninsula, 2012 to 2016. Canadian Journal of Infectious Diseases and Medical Microbiology, 2018. 6725284.

Adegboye, Oyelola A., Leung, Denis H.Y., and Wang, You-Gan (2018) Analysis of spatial data with a nested correlation structure. Journal of the Royal Statistical Society: Series C (Applied Statistics), 67 (2). pp. 329-354.

Wallbridge, Peter, Parry, Selina M., Das, Sourav, Law, Candice, Hammerschlag, Gary, Irving, Louis, Hew, Mark, and Steinfort, Daniel (2018) Parasternal intercostal muscle ultrasound in chronic obstructive pulmonary disease correlates with spirometric severity. Scientific Reports, 8. 15274.

Sun, Kaiyuan, Zhang, Qian, Pastore-Piontti, Ana, Chinazzi, Matteo, Mistry, Dina, Dean, Natalie E., Rojas, Diana Patricia, Merler, Stefano, Poletti, Piero, Rossi, Luca, Halloran, M. Elizabeth, Longini, Ira M., and Vespignani, Alessandro (2018) Quantifying the risk of local Zika virus transmission in the contiguous US during the 2015-2016 ZIKV epidemic. BMC Medicine, 16. 195.

Adegboye, Oyelola A., Gayawan, Ezra, and Hanna, Fahad (2017) Spatial modelling of contribution of individual level risk factors for mortality from Middle East respiratory syndrome coronavirus in the Arabian Peninsula. PLoS ONE, 12 (7). e0181215.

Adegboye, Oyelola A., and Adegboye, Majeed (2017) Spatially correlated time series and ecological niche analysis of cutaneous leishmaniasis in Afghanistan. International Journal of Environmental Research and Public Health, 14 (3). 309.

Adegboye, O.A., Al-Saghir, M., and Leung, D.H.Y. (2017) Joint spatial time-series epidemiological analysis of malaria and cutaneous leishmaniasis infection. Epidemiology and Infection, 145 (4). pp. 685-700.

Oliveira, G.V., Coutinho, F.P., Campello, R.J.G.B., and Naldi, M.C. (2017) Improving k -means through distributed scalable metaheuristics. Neurocomputing, 246. pp. 45-57.

Das, Sourav, Cook, Alex R., Wah, Win, Win, Khin Mar Kyi, Chee, Cynthia Bin Eng, Wang, Yee Tang, and Hsu, Li Yang (2017) Spatial dynamics of TB within a highly urbanised Asian metropolis using point patterns. Scientific Reports, 7. 36.

Goudey, B., Hickson, R.I., Hettiarachchige, C.K.H., Pore, M., Reeves, C., Smith, O.J., and Swan, A. (2017) A framework for optimal health worker allocation in under-resourced regions. IBM Journal of Research and Development, 61 (6). 5. 5:1-5:12.

Kault, David (2017) The maimed Martian, credible intervals and bias against benefit. Evidence-Based Medicine, 22 (2). pp. 49-53.

Khatab, Khaled, Adegboye, Oyelola, and Mohammed, Taofeeq Ibn (2016) Social and demographic factors associated with morbidities in young children in Egypt: a Bayesian geo-additive semi-parametric multinomial model. PLoS ONE, 11 (7). e0159173.

van de Pol, Martijn, Bailey, Liam D., Mclean, Nina, Rijsdijk, Laurie, Lawson, Callum R., and Brouwer, Lyanne (2016) Identifying the best climatic predictors in ecology and evolution. Methods in Ecology and Evolution, 7 (10). pp. 1246-1257.

Sarink, Danja, Nedkoff, Lee, Briffa, Tom, Shaw, Jonathan E., Magliano, Dianna J., Stevenson, Christopher, Mannan, Haider, Knuiman, Matthew, and Peeters, Anna (2016) Projected age- and sex-specific prevalence of cardiovascular diseases in Western Australian adults from 2005-2045. European Journal of Preventative Cardiology, 23 (1). pp. 23-32.

Bailey, Liam D., and van de Pol, Martijn (2016) climwin: an R toolbox for climate window analysis. PLoS ONE, 11. e0167980.

Rojas, Diana Patricia, Dean, Natalie E., Yang, Yang, Kenah, Eben, Quintero, Juliana, Tomasi, Simon, Ramirez, Erika Lorena, Kelly, Yendi, Castro, Carolina, Carrasquilla, Gabriel, Halloran, M. Elizabeth, and Longini, Ira M. (2016) The epidemiology and transmissibility of Zika virus in Girardot and San Andres Island, Colombia, September 2015 to January 2016. Eurosurveillance, 21 (28). 30283.

van de Pol, Martijn (2012) Quantifying individual variation in reaction norms: how study design affects the accuracy, precision and power of random regression models. Methods in Ecology and Evolution, 3 (2). pp. 268-280.

van de Pol, Martijn, and Cockburn, Andrew (2011) Identifying the critical climatic time window that affects trait expression. American Naturalist, 177 (5). pp. 698-707.

van de Pol, Martijn, and Wright, Jonathan (2009) A simple method for distinguishing within- versus between-subject effects using mixed models. Animal Behaviour, 77 (3). pp. 753-758.

van de Pol, M., and Verhulst, S. (2006) Age‐Dependent Traits: A New Statistical Model to Separate Within‐ and Between‐Individual Effects. American Naturalist, 167 (5). pp. 766-773.

Book Chapter

van de Pol, Martijn, and Bailey, Liam D. (2019) Quantifying the climatic sensitivity of individuals, populations, and species. In: Dunn, P.O., and Møller, A.P., (eds.) Effects of Climate Change on Birds. Oxford University Press, Oxford, UK, pp. 44-59.

Amirkhah, Raheleh, Meshkin, Hojjat Naderi, Farazmand, Ali, Rasko, John E.J., and Schmitz, Ulf (2017) Computational and experimental identification of tissue-specific MicroRNA targets. In: Dalmay, Tamas, (ed.) MicroRNA Detection and Target Identification: methods and protocols. Methods in Molecular Biology, 1580 . Humana Press Inc., New York, NY, USA, pp. 127-147.

Conference Item

Araujo Neto, Antonio Cavalcante, Sander, Jörg, Campello, Ricardo J.G.B., and Nascimento, Mario A. (2017) Efficient computation of multiple density-based clustering hierarchies. In: Proceedings of the 17th IEEE International Conference on Data Mining. pp. 991-996. From: ICDM 2017: 17th IEEE International Conference on Data Mining, 18-21 November 2017, New Orleans, LA, USA.

Thesis

McDonald, Sarah Isobel Mary (2021) Metal contaminants in urban stormwater runoff: composition, biological interactions and impacts. PhD thesis, The University of Melbourne.

Other

Bailey, Liam D., and van de Pol, Martijn (2020) Climwin: Climate Window Analysis. Comprehensive R Archive Network (CRAN).

van de Pol, Martijn, Brouwer, Lyanne, and Cockburn, Andrew (2020) R package HIPHOP: parentage assignment using bi-allelic genetic markers. Comprehensive R Archive Network (CRAN).