Article

Okoh, God'spower Richard, Ariel, Ellen, Whitmore, David, and Horwood, Paul F. (2023) Metagenomic and Molecular Detection of Novel Fecal Viruses in Free-Ranging Agile Wallabies. EcoHealth, 20. pp. 427-440.

Volle, Romain, Luo, Lingjie, Razafindratsimandresy, Richter, Sadeuh-Mba, Serge Alain, Gouandjika-Valisache, Ionela, Horwood, Paul, Duong, Veasna, Buchy, Philippe, Joffret, Marie Line, Huang, Zhong, Duizer, Erwin, Martin, Javier, Chakrabarti, Lisa A., Dussart, Philippe, Jouvenet, Nolwenn, Delpeyroux, Francis, and Bessaud, Maël (2023) Neutralization of African enterovirus A71 genogroups by antibodies to canonical genogroups. Journal of General Virology, 104 (11). 001911.

Speck, Peter, Mackenzie, Jason, Bull, Rowena A., Slobedman, Barry, Drummer, Heidi, Fraser, Johanna, Herrero, Lara, Helbig, Karla, Londrigan, Sarah, Moseley, Gregory, Prow, Natalie, Hansman, Grant, Edwards, Robert, Ahlenstiel, Chantelle, Abendroth, Allison, Tscharke, David, Hobson-Peters, Jody, Kriiger-Loterio, Robson, Parry, Rhys, Marsh, Glenn, Harding, Emma, Jacques, David A., Gartner, Matthew J., Lee, Wen Shi, McAuley, Julie, Vaz, Paola, Sainsbury, Frank, Tate, Michelle D., Sinclair, Jane, Imrie, Allison, Rawlinson, Stephen, Harman, Andrew, Carr, Jillian M., Monson, Ebony A., Hibma, Merilyn, Mahony, Timothy J., Tu, Thomas, Center, Robert J., Shrestha, Lok Bahadur, Hall, Robyn, Warner, Morgyn, Ward, Vernon, Anderson, Danielle E., Eyre, Nicholas S., Netzler, Natalie E., Peel, Alison J., Revill, Peter, Beard, Michael, Legione, Alistair R., Spencer, Alexandra J., Idris, Adi, Forwood, Jade, Sarker, Subir, Purcell, Damian F.J., Bartlett, Nathan, Deerain, Joshua M., Brew, Bruce J., Asgari, Sassan, Farrell, Helen, Khromykh, Alexander, Enosi Tuipulotu, Daniel, Anderson, David, Mese, Sevim, Tayyar, Yaman, Edenborough, Kathryn, Uddin, Jasim Muhammad, Hussain, Abrar, Daymond, Connor J.I., Agius, Jacinta, Johnson, Karyn N., Shirmast, Paniz, Abedinzadeshahri, Mahdi, MacDiarmid, Robin, Ashley, Caroline L., Laws, Jay, Furfaro, Lucy L., Burton, Thomas D., Johnson, Stephen M.R., Telikani, Zahra, Petrone, Mary, Roby, Justin A., Samer, Carolyn, Suhrbier, Andreas, Van Der Kamp, April, Cunningham, Anthony, Donato, Celeste, Mahar, Jackie, Black, Wesley D., Vasudevan, Subhash, Lenchine, Roman, Spann, Kirsten, Rawle, Daniel J., Rudd, Penny, Neil, Jessica, Kingston, Richard, Newsome, Timothy P., Kim, Ki Wook, Mak, Johnson, Lowry, Kym, Bryant, Nathan, Meers, Joanne, Roberts, Jason A., McMillan, Nigel, Labzin, Larisa I., Slonchak, Andrii, Hugo, Leon E., Henzeler, Bennett, Newton, Natalee D., David, Cassandra T., Reading, Patrick C., Esneau, Camille, Briody, Tatiana, Nasr, Najla, McNeale, Donna, McSharry, Brian, Fakhri, Omid, Horsburgh, Bethany A., Logan, Grant, Howley, Paul, and Young, Paul (2023) Statement in Support of: “Virology under the Microscope—a Call for Rational Discourse”. mBio, 14 (3). e0081523.

Hoad, Mikayla, Cross, Emily M., Donnelly, Camilla M., Sarker, Subir, Roby, Justin A., and Forwood, Jade K. (2023) Structural Characterization of Porcine Adeno-Associated Virus Capsid Protein with Nuclear Trafficking Protein Importin Alpha Reveals a Bipartite Nuclear Localization Signal. Viruses, 15 (2). 315.

Das, Mithun, Smith, Monique L., Furihata, Tomomi, Sarker, Subir, O’shea, Ross, and Helbig, Karla J. (2022) Astrocyte Control of Zika Infection Is Independent of Interferon Type I and Type III Expression. Biology, 11 (1). 143.

Biancolella, Michela, Colona, Vito Luigi, Mehrian-Shai, Ruty, Watt, Jessica Lee, Luzzatto, Lucio, Novelli, Giuseppe, and Reichardt, Juergen K. V. (2022) COVID-19 2022 update: transition of the pandemic to the endemic phase. Human Genomics, 16. 19.

Seneviratne, Maheesha, Fernando, Malindu E., Kandasamy, Yogavijayan, White, Andrew, Sabesan, Vanaja, and Norton, Robert (2022) Cytomegalovirus infection in a single-centre Australian neonatal cohort. Journal of Paediatrics and Child Health, 58. pp. 1136-1144.

Wong, Yide, Meehan, Michael, Burrows, Scott, Doolan, Denise, and Miles, John (2022) Estimating the global burden of Epstein–Barr virus‑related cancers. Journal of Cancer Research and Clinical Oncology, 148. pp. 31-46.

Coghill, Anna E., Fang, Jianwen, Liu, Zhiwei, Chen, Chien-Jen, Jarrett, Ruth F., Hjalgrim, Henrik, Proietti, Carla, Yu, Kelly J., Hsu, Wan-Lun, Lou, Pei-Jen, Wang, Chen-Ping, Zhao, Yingdong, Doolan, Denise, and Hildesheim, Allan (2022) Identifying Epstein–Barr virus peptide sequences associated with differential IgG antibody response. International Journal of Infectious Diseases, 114. pp. 65-71.

Gupta, N., Wilson, W., Neumayr, A., and Saravu, K. (2022) Kyasanur forest disease: a state-of-the-art review. Quarterly Journal of Medicine, 115 (6). pp. 351-358.

Doolan, Denise, Lu, Shan, Ross, Ted, and Cox, Manon (2022) Meet the fellows: Everything about ISV. Human Vaccines & Immunotherapeutics, 18 (4). 2096964.

Mass Kokolevich, Zoe, Crowe, Melissa, Mendez, Diana, Biros, Erik, and Reznik, Jacqueline Elise (2022) Most Common Long COVID Physical Symptoms in Working Age Adults Who Experienced Mild COVID-19 Infection: A Scoping Review. Healthcare, 10 (12). 2577.

Ronca, Shannon E., Gunter, Sarah M., Kairis, Rebecca Berry, Lino, Allison, Romero, Jonathan, Pautler, Robia G., Nimmo, Alan, and Murray, Kristy O. (2022) A Potential Role for Substance P in West Nile Virus Neuropathogenesis. Viruses, 14 (9). 1961.

Htet, Norah Htet, Naing, Cho Min, Vongpunsawad, Sompong, Win, Thin Thin, and Poovorawan, Yong (2022) Thymosin-ɑ1 for people with chronic hepatitis B. Cochrane Database of Systematic Reviews, 2022 (3). CD014610.

Fulford, Thomas S., Van, Huy, Gherardin, Nicholas A., Zheng, Shuning, Ciula, Marcin, Drummer, Heidi E., Redmond, Samuel, Tan, Hyon-Xhi, Boo, Irene, Center, Rob J., Li, Fan, Grimley, Samantha L., Wines, Bruce D., Nguyen, Thi H.O., Mordant, Francesca L., Ellenberg, Paula, Rowntree, Louise C., Kedzierski, Lukasz, Cheng, Allen C., Doolan, Denise L., Matthews, Gail, Bond, Katherine, Hogarth, P. Mark, McQuilten, Zoe, Subbarao, Kanta, Kedzierska, Katherine, Juno, Jennifer A., Wheatley, Adam K., Kent, Stephen J., Williamson, Deborah A., Purcell, Damian F.J., Anderson, David A., and Godfrey, Dale I. (2021) A point-of-care lateral flow assay for neutralising antibodies against SARS-CoV-2. EBioMedicine, 74. p. 103729.

Sarker, Subir, Isberg, Sally R., Athukorala, Ajani, Mathew, Ravi, Capati, Nolasco, Haque, Md. Hakimul, and Helbig, Karla J. (2021) Characterization of a Complete Genome Sequence of Molluscum Contagiosum Virus from an Adult Woman in Australia. Microbiology Resource Announcements, 10 (1). e00939-20.

Liu, Zhiwei, Sarathkumara, Yomani, Chan, John K.C., Kwong, Yok-Lam, Lam, Tai Hing, Ip, Dennis Kai Ming, Chiu, Brian C.-H., Xu, Jun, Su, Yu-Chieh, Proietti, Carla, Cooper, Martha, Yu, Kelly J., Bassig, Bryan, Liang, Raymond, Hu, Wei, Ji, Bu-Tian, Coghill, Anna E., Pfeiffer, Ruth M., Hildesheim, Allan, Rothman, Nathaniel, Doolan, Denise, and Lan, Qing (2021) Characterization of the humoral immune response to the EBV proteome in extranodal NK/T-cell lymphoma. Scientific Reports, 11. 23664.

Doolan, Denise, Kozlakidis, Zisis, Zhang, Zhongheng, Paessler, Slobodan, Su, Longxiang, Yokota, Yasuko Tsunetsugu, Shioda, Tatsuo, Rodriguez-Palacios, Alexander, Kaynar, Ata Murat, Ahmed, Rukhsana, Samy, Abdallah, Bradby, Hannah, Kalergis, Alexis M., Dutta, Mohan Jyoti, Kogut, Michael, and Zhang, Shen-Ying (2021) Editorial: Coronavirus disease (COVID-19): pathophysiology, epidemiology, clinical management and public health response. Frontiers in Public Health, 9. 807159.

Koutsakos, Marios, Rowntree, Louise C., Hensen, Luca, Chua, Brendon Y., Van De Sandt, Carolien E., Habel, Jennifer R., Zhang, Wuji, Jia, Xiaoxiao, Kedzierski, Lukasz, Ashhurst, Thomas M., Putri, Givanna H., Marsh-Wakefield, Felix, Read, Mark N., Edwards, Davis N., Clemens, E. Bridie, Wong, Chinn Yi, Mordant, Francesca L., Juno, Jennifer A., Amanat, Fatima, Audsley, Jennifer, Holmes, Natasha E., Gordon, Claire L., Smibert, Olivia C., Trubiano, Jason A., Hughes, Carly M., Catton, Mike, Denholm, Justin T., Tong, Steven Y.C., Doolan, Denise L., Kotsimbos, Tom C., Jackson, David C., Krammer, Florian, Godfrey, Dale I., Chung, Amy W., King, Nicholas J.C., Lewin, Sharon R., Wheatley, Adam K., Kent, Stephen J., Subbarao, Kanta, McMahon, James, Thevarajan, Irani, Nguyen, Thi H.O., Cheng, Allen C., and Kedzierska, Katherine (2021) Integrated immune dynamics define correlates of COVID-19 severity and antibody responses. Cell Reports Medicine, 2 (3). 100208.

Rana, Md Sohel, Jahan, Afsana Akter, Kaisar, S. M.Golam, Siddiqi, Umme Ruman, Sarker, Subir, Begum, Mst Ismat Ara, Ghosh, Sumon, Sarker, Sudeb, Ahmed, Be Nazir, and Shamsuzzaman, Abul Khair Mohammad (2021) Knowledge, attitudes and perceptions about rabies among the people in the community, healthcare professionals and veterinary practitioners in Bangladesh. One Health, 13. 100308.

Rowntree, Louise C., Chua, Brendon Y., Nicholson, Suellen, Koutsakos, Marios, Hensen, Luca, Douros, Celia, Selva, Kevin, Mordant, Francesca L., Wong, Chinn Yi, Habel, Jennifer R., Zhang, Wuji, Xiaoxiao, Jia, Allen, Lily, Doolan, Denise L., Jackson, David C., Wheatley, Adam K., Kent, Stephen J., Amanat, Fatima, Krammer, Florian, Subbarao, Kanta, Cheng, Allen C., Chung, Amy W., Catton, Mike, Nguyen, Thi Ho, Sandt, Carolien E., and Kedzierska, Katherine (2021) Robust correlations across six SARS-CoV-2 serology assays detecting distinct antibody features. Clinical & Translational Immunology, 10. e1258.

Selva, Kevin J., Van De Sandt, Carolien E., Lemke, Melissa M., Lee, Christina Y., Shoffner, Suzanne K., Chua, Brendon Y., Davis, Samantha K., Nguyen, Thi, Rowntree, Louise, Hensen, Luca, Koutsakos, Marios, Wong, Chinn Yi, Mordant, Francesca, Jackson, David C., Flanagan, Katie L., Crowe, Jane, Tosif, Shidan, Neeland, Melanie R., Sutton, Philip, Licciardi, Paul V., Crawford, Nigel W., Cheng, Allen C., Doolan, Denise L., Amanat, Fatima, Krammer, Florian, Chappell, Keith, Modhiran, Naphak, Watterson, Daniel, Young, Paul, Lee, Wen Shi, Wines, Bruce D., Hogarth, P. Mark, Esterbauer, Robyn, Kelly, Hannah G., Tan, Hyon-Xhi, Juno, Jennifer A., Wheatley, Adam K., Kent, Stephen J., Arnold, Kelly B., Kedzierska, Katherine, and Chung, Amy W. (2021) Systems serology detects functionally distinct coronavirus antibody features in children and elderly. Nature Communications, 12. 2037.

Kinobe, Robert T., and Owens, Leigh (2021) A systematic review of experimental evidence for antiviral effects of ivermectin and an in silico analysis of ivermectin's possible mode of action against SARS-CoV-2. Fundamental & Clinical Pharmacology, 35 (2). pp. 260-276.

Habel, Jennifer H., Nguyen, Thi H.O., van de Sandt, Carolien E., Juno, Jennifer A., Chaurasia, Priyanka, Wragg, Kathleen, Koutsakos, Marios, Hensen, Luca, Jia, Xiaoxiao, Chua, Brendon, Zhang, Wuji, Tan, Hyon-Xhi, Flanagan, Katie L., Doolan, Denise L., Torresi, Joseph, Chen, Weisan, Wakim, Linda M., Cheng, Allen C., Doherty, Peter C., Petersen, Jan, Rossjohn, Jamie, Wheatley, Adam K., Kent, Stephen J., Rowntree, Louise C., and Kedzierska, Katherine (2020) Suboptimal SARS-CoV-2-specific CD8(+) T cell response associated with the prominent HLA-A*02:01 phenotype. Proceedings of the National Academy of Sciences of the United States of America, 117 (39). pp. 24384-24391.

Simon, Julia, Liu, Zhiwei, Brenner, Nicole, Yu, Kelly J., Hsu, Wan-Lun, Wang, Cheng-Ping, Chien, Yin-Chu, Coghill, Anna E., Chen, Chien-Jen, Butt, Julia, Proietti, Carla, Doolan, Denise L., Hildesheim, Allan, and Waterboer, Tim (2020) Validation of an Epstein-Barr virus antibody risk stratification signature for nasopharyngeal carcinoma by use of multiplex serology. Journal of Clinical Microbiology, 58 (5). e00077-20.

Coghill, Anna, Proietti, Carla, Liu, Zhiwei, Krause, Lutz, Bethony, Jeff, Prokunina-Olsson, Ludmila, Obajemu, Adeola, Nkrumah, Francis, Biggar, Robert J., Bhatia, Kishor, Hildesheim, Allan, Doolan, Denise L., and Mbulaiteye, Sam M. (2020) The association between the comprehensive Epstein-Barr Virus serologic profile and endemic Burkitt lymphoma. Cancer Epidemiology, Biomarkers & Prevention, 29 (1). pp. 57-62.

Vanderven, Hillary A., and Kent, Stephen J. (2020) The protective potential of Fc‐mediated antibody functions against influenza virus and other viral pathogens. Immunology and Cell Biology, 98. pp. 253-263.

Smith, Simon, Russell, Darren, Horne, Peter, and Hanson, Josh (2019) HTLV-1 is rare in Far North Queensland despite a significant burden of classically associated diseases. Pathology, 51 (1). pp. 91-94.

van den Hurk, Andrew F., Pyke, Alyssa T., Mackenzie, John S., Hall-Mendelin, Sonja, and Ritchie, Scott A. (2019) Japanese encephalitis virus in Australia: from known known to known unknown. Tropical Medicine and Infectious Disease, 4 (1). 38.

Cheikh-brahim Ahmed, Mohamed-Lemine, Heukelbach, Jorg, Weddih, Abdellahi, Filali-Maltouf, Abdelkarim, Sidatt, Mariem, Makhalla, Khattry, Dahdi, Sid'Ahmed, Ahmed, Aly Cheybany Cheikh, El-Mami, Mohamed Val, Tate, Jacqueline E., Parashar, Umesh D., and Benhafid, Mohammed (2019) Reduction of hospitalizations with diarrhea among children aged 0-5 years in Nouakchott, Mauritania, following the introduction of rotavirus vaccine. Vaccine, 37 (11). pp. 1407-1411.

Murugananthan, Kalamathy, Subramaniyam, Sivaganesh, Kumanan, Thirunavukarasu, Owens, Leigh, Ketheesan, Natkunam, and Noordeen, Faseeha (2018) Blood group AB is associated with severe forms of dengue virus infection. VirusDisease, 29 (1). pp. 103-105.

Murugananthan, Kalamathy, Coonghe, Pethirupillai A.D., Ketheesan, Natkunam, and Noordeen, Faseeha (2018) Comparison of a rapid immuno-chromatography assay with a standard ELISA for the detection of IgM and IgG antibodies against dengue viruses. VirusDisease, 29 (2). pp. 199-202.

Ramirez Lopez, Ana L., Hall-Mendelin, Sonja, Doggett, Stephen L., Hewitson, Glen R., Mcmahon, Jamie L., Ritchie, Scott A., and van den Hurk, Andrew F. (2018) Mosquito excreta: a sample type with many potential applications for the investigation of Ross River virus and West Nile virus ecology. PLoS Neglected Tropical Diseases, 12 (8). e0006771.

Ramírez, Ana L., van den Hurk, Andrew F., Meyer Steiger, Dagmar B., and Ritchie, Scott A. (2018) Searching for the proverbial needle in a haystack: advances in mosquito-borne arbovirus surveillance. Parasites and Vectors, 11. 320.

Lee, Andrew, Hanson, Josh, Fox, Penny, Spice, Greg, Russell, Darren, and Boyd, Peter (2018) A decentralised, multidisciplinary model of care facilitates treatment of hepatitis C in regional Australia. Journal of Virus Eradication, 4 (3). pp. 160-164.

Martin Munoz De Cote, Gerardo, Webb, Rebecca J., Chen, Carla, Plowright, Raina K., and Skerratt, Lee F. (2017) Microclimates might limit indirect spillover of the bat borne zoonotic Hendra virus. Microbial Ecology, 74 (1). pp. 106-115.

McBride, William J.H., Abhayaratna, Walter P., Barr, Ian, Booy, Robert, Carapetis, Jonathan, Carson, Simon, De Looze, Ferdinandus, Ellis-Pegler, Rod, Heron, Leon, Karrasch, Jeff, Marshall, Helen, Mcvernon, Jodie, Nolan, Terry, Rawlinson, William, Reid, Jim, Richmond, Peter, Shakib, Sepehr, Basser, Russell, Hartel, Gunter F., Lai, Michael H., Rockman, Steven, and Greenberg, Michael E. (2016) Efficacy of a trivalent influenza vaccine against seasonal strains and against 2009 pandemic H1N1: a randomized, placebo-controlled trial. Vaccine, 34 (41). pp. 4991-4997.

de Góes Cavalcanti, Luciano Pamplona, Tauil, Pedro Luiz, Alencar, Carlos Henrique, Oliveira, Wanderson, Teixeira, Mauro Martins, and Heukelbach, Jorg (2016) Zika virus infection, associated microcephaly, and low yellow fever vaccination coverage in Brazil: is there any causal link? Journal of Infection in Developing Countries, 10 (6). pp. 563-566.

Brown, Katy, and Leggat, Peter A. (2016) Human monkeypox: current state of knowledge and implications for the future. Tropical Medicine and Infectious Disease, 1 (1). 8. pp. 1-13.

Valkenburg, Sophie A., Josephs, Tracy M., Clemens, E. Bridie, Grant, Emma J., Nguyen, Thi H.O., Wang, George C., Price, David A., Miller, Adrian, Tong, Steven Y.C., Thomas, Paul G., Doherty, Peter C., Rossjohn, Jamie, Gras, Stephanie, and Kedzierska, Katherine (2016) Molecular basis for universal HLA-A*0201–restricted CD8+ T-cell immunity against influenza viruses. Proceedings of the National Academy of Sciences of the United States of America, 113 (116). pp. 4440-4445.

Clemens, E. Bridie, Grant, Emma J., Wang, Zhongfang, Gras, Stephanie, Tipping, Peta, Rossjohn, Jamie, Miller, Adrian, Tong, Steven Y.C., and Kedzierska, Katherine (2016) Towards identification of immune and genetic correlates of severe influenza disease in Indigenous Australians. Immunology and Cell Biology, 94 (4). pp. 367-377.

Conference Item

Sarker, Subir, Raidal, Shane, Helbig, Karla, and Forwood, Jade (2021) Atomic Structure of the World's Smallest Virus-Like Particles: Pleasant Surprises in Clinical Applications. In: The FASEB Journal (35) 00234. From: Experimental Biology 2021 Meeting, 27-30 April 2021, Online.

Thesis

Sarathkumara, Seekkuge Yomani Dilukshi (2022) Biomarker discovery for EBV-associated cancers and tuberculosis. PhD thesis, James Cook University.