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Catullo, Renee A., Yeap, Heng L., Lee, Siu F., Bragg, Jason G., Cheesman, Jodie, De Faveri, Stefano, Edwards, Owain, Hee, Alvin K.W., Popa, Angel D., Schiffer, Michele, and Oakeshott, John G. (2019) A genome-wide approach for uncovering evolutionary relationships of Australian Bactrocera species complexes (Diptera: Tephritidae). Invertebrate Systematics, 33 (4). pp. 618-627.

D

Dibattista, Joseph D., Alfaro, Michael E., Sorenson, Laurie, Choat, John H., Hobbs, Jean-Paul A., Sinclair-Taylor, Tane H., Rocha, Luiz A., Chang, Jonathan, Luiz, Osmar J., Cowman, Peter F., Friedman, Matt, and Berumen, Michael L. (2018) Ice ages and butterflyfishes: phylogenomics elucidates the ecological and evolutionary history of reef fishes in an endemism hotspot. Ecology and Evolution, 8 (22). pp. 10989-11008.

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Garrigue, Claire, Bonnerville, Claire Daisy, Cleguer, Christophe, and Oremus, Marc (2022) Extremely Low mtDNA Diversity and High Genetic Differentiation Reveal the Precarious Genetic Status of Dugongs in New Caledonia, South Pacific. Journal of Heredity, 113 (5). pp. 516-524.

H

He, Ziwen, Feng, Xiao, Chen, Qipian, Li, Liangwei, Li, Sen, Han, Kai, Guo, Zixiao, Wang, Jiayan, Liu, Min, Shi, Chengcheng, Xu, Shaohua, Shao, Shao, Liu, Xin, Mao, Xiaomeng, Xie, Wei, Wang, Xinfeng, Zhang, Rufan, Li, Guohong, Wu, Weihong, Zheng, Zheng, Zhong, Cairong, Duke, Norman C., Boufford, David E., Fan, Guangyi, Wu, Chung I., Ricklefs, Robert E., and Shi, Suhua (2022) Evolution of coastal forests based on a full set of mangrove genomes. Nature Ecology and Evolution, 6. pp. 738-749.

Hobbs, Jean-Paul A., Richards, Zoe T., Popovic, Iva, Lei, Chuan, Staeudle, Timo M., Montanari, Stefano R., and Dibattista, Joseph D. (2022) Hybridisation and the evolution of coral reef biodiversity. Coral Reefs, 41. pp. 535-549.

Harrison, Hugo B., Berumen, Michael L., Saenz-Agudelo, Pablo, Salas, Eva, Williamson, David H., and Jones, Geoffrey P. (2017) Widespread hybridization and bidirectional introgression in sympatric species of coral reef fish. Molecular Ecology, 26 (20). pp. 5692-5704.

L

Lau, Sally Cheuk Ying (2022) Quaternary evolutionary persistence of Southern Ocean benthic taxa. PhD thesis, James Cook University.

Lau, Sally C. Y., Wilson, Nerida G., Silva, Catarina N. S., and Strugnell, Jan M. (2020) Detecting glacial refugia in the Southern Ocean. Ecography, 43 (11). pp. 1639-1656.

Lau, Quintin, Igawa, Takeshi, Kosch, Tiffany, and Satta, Yoko (2018) Selective constraint acting on TLR2 and TLR4 genes of Japanese Rana frogs. PeerJ, 6.

Liu, Huanle, Stephens, Timothy G., González-Pech, Raúl A., Beltran, Victor H., Lapeyre, Bruno, Bongaerts, Pim, Cooke, Ira, Aranda, Manuel, Bourne, David G., Forêt, Sylvain, Miller, David J., van Oppen, Madeleine J.H., Voolstra, Christian R., Ragan, Mark A., and Chan, Cheong Xin (2018) Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis. Communications Biology, 1. 95.

M

McKnight, Donald T., Carr, Leah J., Bower, Deborah S., Schwarzkopf, Lin, Alford, Ross A., and Zenger, Kyall R. (2020) Infection dynamics, dispersal, and adaptation: understanding the lack of recovery in a remnant frog population following a disease outbreak. Heredity, 125. pp. 110-123.

Malerba, Martino E., Palacios, Maria M., Palacios Delgado, Yussi M., Beardall, John, and Marshall, Dustin J. (2018) Cell size, photosynthesis and the package effect: an artificial selection approach. New Phytologist, 219 (1). pp. 449-461.

Moya, Aurelie, Sakamaki, Kazuhiro, Mason, Benjamin M., Huisman, Lotte, Forêt, Sylvain, Weiss, Yvonne, Bull, Tara, Tomii, Kentaro, Imai, Kenichiro, Hayward, David C., Ball, Eldon E., and Miller, David J. (2016) Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora. BMC Genomics, 17. 62. pp. 1-20.

R

Ritschard, Elena A., Whitelaw, Brooke, Albertin, Caroline B., Cooke, Ira R., Strugnell, Jan M., and Simakov, Oleg (2019) Coupled genomic evolutionary histories as signatures of organismal innovations in Cephalopods co-evolutionary signatures across levels of genome organization may shed light on functional linkage and origin of Cephalopod novelties. BioEssays, 41. 1900073.

Ross, Eric, Blair, David, Guerrero-Hernández, Carlos, and Sánchez Alvarado, Alejandro (2016) Comparative and transcriptome analyses uncover key aspects of coding-and long noncoding RNAs in flatworm mitochondrial genomes. G3 Genes Genomes Genetics, 6 (5). pp. 1191-1200.

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Suryawanshi, Ashwini, Schaefer, Karolin, Holz, Oliver, Apel, David, Lange, Ellen, Hayward, David C., Miller, David J., and Hassel, Monika (2020) What lies beneath: Hydra provides cnidarian perspectives into the evolution of FGFR docking proteins. Development Genes and Evolution, 230. pp. 227-238.

Sanchez, Gustavo, Setiamarga, Davin H.E., Tuanapaya, Surangkana, Tongtherm, Kittichai, Winkelmann, Inger E., Schmidbaur, Hannah, Umino, Tetsuya, Albertin, Caroline, Allcock, Louise, Perales-Raya, Catalina, Gleadall, Ian, Strugnell, Jan M., Simakov, Oleg, and Nabhitabhata, Jaruwat (2018) Genus-level phylogeny of cephalopods using molecular markers: current status and problematic areas. PeerJ, 6. e4331.

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Thomas, Luke, Underwood, Jim N., Rose, Noah H., Fuller, Zachary L., Richards, Zoe T., Dugal, Laurence, Grimaldi, Camille M., Cooke, Ira R., Palumbi, Stephen, and Gilmour, James P. (2022) Spatially varying selection between habitats drives physiological shifts and local adaptation in a broadcast spawning coral on a remote atoll in Western Australia. Science Advances, 8 (17). eabl9185.

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Wang, Jidong, Firth, Cadhla, Amos-Ritchie, Rachel, Davis, Steven S., Yin, Hong, Holmes, Edward C., Blasdell, Kim R., and Walker, Peter J. (2019) Evolutionary history of Simbu serogroup orthobunyaviruses in the Australian episystem. Virology, 535. pp. 32-44.

Y

Yudina, Sophia V., Schelkunov, Mikhail I., Nauheimer, Lars, Crayn, Darren, Chantanaorrapint, Sahut, Hroneš, Michal, Sochor, Michal, Dančák, Martin, Mar, Shek-Shing, Luu, Hong Truong, Nuraliev, Maxim S., and Logacheva, Maria D. (2021) Comparative analysis of plastid genomes in the non-photosynthetic genus Thismia reveals ongoing gene set reduction. Frontiers in Plant Science, 12. 602598.

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Zhang, Xiuping, Blair, David, Wolinska, Justyna, Ma, Xiaolin, Yang, Wenwu, Hu, Wei, and Yin, Mingbo (2021) Genomic regions associated with adaptation to predation in Daphnia often include members of expanded gene families. Proceedings of the Royal Society of London Series B, Biological Sciences, 288 (1955). 20210803.