B

Bailey, Matthew H., Meyerson, William U., Dursi, Lewis Jonathan, Wang, Liang-Bo, Dong, Guanlan, Liang, Wen-Wei, Weerasinghe, Amilia, Li, Shantao, Li, Lize, Kelso, Sean, MC3 Working Group, , PCAWG novel somatic mutation calling methods working group, , Saksena, Gordon, Ellrott, Kyle, Wendl, Michael C., Wheeler, David A., Getz, Gad, Simpson, Jared T., Gerstein, Mark B., Ding, Li, and PCAWG Consortium, (2020) Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications, 11. 4748.

C

Chuang, Yaoyang, Kitahara, Marcelo, Fukami, Hironobu, Tracey, Dianne, Miller, David J., and Chen, Chaolun Allen (2017) Loss and gain of group I introns in the mitochondrial cox1 gene of the scleractinia (cnidaria; anthozoa). Zoological Studies, 56 (9).

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Gruenstaeudl, Michael, Nauheimer, Lars, and Borsch, Thomas (2017) Plastid genome structure and phylogenomics of Nymphaeales: conserved gene order and new insights into relationships. Plant Systematics and Evolution, 303 (9). pp. 1251-1270.

J

Jones, David B., Jerry, Dean R., Khatkar, Mehar, Raadsma, Herman W., van der Steen, Hein, Prochaska, Jeffrey, Fôret, Sylvain, and Zenger, Kyall R. (2017) A comparative integrated gene-based linkage and locus ordering by linkage disequilibrium map for the Pacific white shrimp, Litopenaeus vannamei. Scientific Reports, 7. 10360.

K

Kumar, Ravinder, Singh, Lakhveer, and Zularisam, A. Wahid (2016) Exoelectrogens: Recent advances in molecular drivers involved in extracellular electron transfer and strategies used to improve it for microbial fuel cell applications. Renewable and Sustainable Energy Reviews, 56. pp. 1322-1336.

L

Lerebours, Adélaïde, Chapman, Emma C., Sweet, Michael J., Heupel, Michelle R., and Rotchell, Jeanette M. (2016) Molecular changes in skin pigmented lesions of the coral trout Plectropomus leopardus. Marine Environmental Research, 120. pp. 130-135.

Li, Jia, Bian, Chao, Hu, Yinchang, Mu, Xidong, Shen, Xueyan, Ravi, Vydianathan, Kuznetsova, Inna S., Sun, Ying, Xinxin, You, Qui, Ying, Zhang, Xinhui, Yu, Hui, Huang, Yu, Xu, Pao, Gu, Ruobo, Xu, Junmin, Orban, Laszlo, Venkatesh, Byrappa, and Shi, Qiong (2016) A chromosomelevel genome assembly of the Asian arowana, Scleropages formosus. Scientific Data, 3. 160105.

Lu, Xia, Wang, Hongxia, Li, Yan, and Liu, Baozhong (2016) The impact of selection on population genetic structure in the clam Meretrix petechialis revealed by microsatellite markers. Genetica, 144 (1). pp. 1-8.

Q

Quigley, Kate M., Warner, Patricia A., Bay, Line K., and Willis, Bette L. (2018) Unexpected mixed-mode transmission and moderate genetic regulation of Symbiodinium communities in a brooding coral. Heredity, 121 (6). pp. 524-536.

R

Riginos, Cynthia, Hock, Karlo, Matias, Ambrocio M., Mumby, Peter J., van Oppen, Madeleine J.H., and Lukoschek, Vimoksalehi (2019) Asymmetric dispersal is a critical element of concordance between biophysical dispersal models and spatial genetic structure in Great Barrier Reef corals. Diversity and Distributions, 25 (11). pp. 1684-1696.

Ross, Eric, Blair, David, Guerrero-Hernández, Carlos, and Sánchez Alvarado, Alejandro (2016) Comparative and transcriptome analyses uncover key aspects of coding-and long noncoding RNAs in flatworm mitochondrial genomes. G3 Genes Genomes Genetics, 6 (5). pp. 1191-1200.

S

Schmitz, Ulf, Pinello, Natalia, Jia, Fangzhi, Alasmari, Sultan, Ritchie, William, Keightley, Maria-Cristina, Shini, Shaniko, Lieschke, Graham J., Wong, Justin J-L., and Rasko, John E.J. (2017) Intron retention enhances gene regulatory complexity in vertebrates. Genome Biology, 18. 216.

W

Whitelaw, Brooke L., Jones, David B., Guppy, Jarrod, Morse, Peter, Strugnell, Jan M., Cooke, Ira R., and Zenger, Kyall (2022) High-Density Genetic Linkage Map of the Southern Blue-ringed Octopus (Octopodidae: Hapalochlaena maculosa). Diversity, 14 (12). 1068.

Whitelaw, Brooke (2021) The iridescent enigma: genome evolution and species boundaries of the blue-ringed octopus species complex (Octopodidae: Hapalochlaena). PhD thesis, James Cook University.

Whitelaw, Brooke L., Cooke, Ira R., Finn, Julian, da Fonseca, Rute R., Ritschard, Elena A., Gilbert, M. T. P., Simakov, Oleg, and Strugnell, Jan M. (2020) Adaptive venom evolution and toxicity in octopods is driven by extensive novel gene formation, expansion, and loss. GigaScience, 9 (11). giaa120.

Y

Ying, Hua, Hayward, David C., Cooke, Ira, Wang, Weiwen, Moya, Aurelie, Siemering, Kirby R., Sprungala, Susanne, Ball, Eldon E., Foret, Sylvain, and Miller, David J. (2019) The whole-genome sequence of the coral Acropora millepora. Genome Biology and Evolution, 11 (5). pp. 1374-1379.