A

Arbon, P.M., Andrade Martinez, Maria, Garrett, M. Andrade, Jerry, D.R., and Condon, K. (2024) Determining patterns of tissue tropism for IHHNV, GAV and YHV-7 infection in giant black tiger shrimp (Penaeus monodon) using real-time RT-qPCR. Aquaculture, 584. 740680.

Arbon, P.M., Andrade Martinez, M. Andrade, Jerry, D.R., and Condon, K. (2023) Towards a ‘systems’ approach for viral challenge experiments in shrimp: Reporting guidelines for publication. Reviews in Aquaculture, 16 (2). pp. 923-941.

B

Brazenor, Alexander K., Saunders, Richard J., Miller, Terrance L., and Hutson, Kate S. (2018) Morphological variation in the cosmopolitan fish parasite Neobenedenia girellae (Capsalidae: Monogenea). International Journal for Parasitology, 48 (2). pp. 125-134.

Brazenor, Alexander K.,, Bertozzi, Terry, Miller, Terrence L., Whittington, Ian D., and Hutson, Kate S. (2018) DNA profiling reveals Neobenedenia girellae as the primary culprit in global fisheries and aquaculture. Molecular Phylogenetics and Evolution, 129. pp. 130-137.

Bowater, R.O., Dennis, M.M., Blyde, D., Stone, B., Barnes, A.C., Delamare-Deboutteville, J., Horton, M.A., White, M., Condon, K., and Jones, R. (2018) Epizootics of Streptococcus agalactiae infection in captive rays from Queensland, Australia. Journal of Fish Diseases, 41 (2). pp. 223-232.

Brazenor, Alexander K., Francis, David S., Hutson, Kate S., and Carton, Alexander G. (2017) Biochemical composition of marine monogenean parasite eggs. Molecular and Biochemical Parasitology, 218. pp. 1-3.

Bastos Gomes, G., Jerry, D.R., Miller, T.L., and Hutson, K.S. (2017) Current status of parasitic ciliates Chilodonella spp. (Phyllopharyngea: Chilodonellidae) in freshwater fish aquaculture. Journal of Fish Diseases, 40 (5). pp. 703-715.

Bastos Gomes, Giana, Miller, Terrence L., Vaughan, David B., Jerry, Dean R., McCowan, Christina, Bradley, Tracey L., and Hutson, Kate S. (2017) Evidence of multiple species of Chilodonella (Protozoa, Ciliophora) infecting Australian farmed freshwater fishes. Veterinary Parasitology, 237. pp. 8-16.

Bastos Gomes, Giana, Hutson, Kate S., Domingos, Jose A., Chung, Catherine, Hayward, Scott, Miller, Terrance L., and Jerry, Dean R. (2017) Use of environmental DNA (eDNA) and water quality data to predict protozoan parasites outbreaks in fish farms. Aquaculture, 479. pp. 467-473.

C

Condon, Kelly, Huerlimann, Roger, Charles, Tony, Lowrey, Ryan, Arbon, Phoebe, and Jerry, Dean R. (2022) Using bacterial whole genome sequencing to identify toxin genes associated with disease outbreaks in black tiger shrimp (Penaeus monodon) aquaculture production. Aquaculture, 546. 737255.

Condon, Kelly (2019) Management of Betanodavirus infection in Queensland giant grouper, Epinephelus lanceolatus (Bloch). PhD thesis, James Cook University.

G

Gomes, Giana Bastos, Hutson, Kate S., Domingos, Jose A., Infante Villamil, Sandra, Huerlimann, Roger, Miller, Terrence L., and Jerry, Dean (2019) Parasitic protozoan interactions with bacterial microbiome in a tropical fish farm. Aquaculture, 502. pp. 196-201.

H

Hutson, Kate Suzanne, Mooney, Allan James, Ernst, Ingo, Brazenor, Alexander Karlis, Scheel, Max, and Atalah, Javier (2022) A decision support tool for parasite management in fish aquaculture. Reviews in Aquaculture, 14 (3). pp. 1656-1670.

Hoai, Truong Dinh (2020) Reproductive strategies of parasitic flatworms (Platyhelminthes, Monogenea): the impact on parasite management in aquaculture. Aquaculture International, 28 (1). pp. 421-447.

Hutson, Kate, Cable, Joanne, Grutter, Alexandra S., Paziewska-Harris, Anna, and Barber, Iain (2018) Aquatic parasite cultures and their applications. Trends in Parasitology, 34 (12). pp. 1082-1096.

Hutson, Kate, Brazenor, Alexander, Vaughan, David, and Trujillo Gonzalez, Alejandro (2018) Monogenean parasite cultures: current techniques and recent advances. In: Rollinson, D., and Stothard, J.R., (eds.) Advances in Parasitology. Advances in Parasitology, 99 . Elsevier, London, UK, pp. 61-91.

Hayakijkosol, Orachun, Owens, Leigh, and Picard, Jacqueline (2017) Case report of bacterial infections in a redclaw crayfish (Cherax quadricarinatus) hatchery. Aquaculture, 475. pp. 1-7.

I

Intriago, Pablo, Medina, Andres, Espinoza, Jorge, Enriquez, Xavier, Arteaga, Kelly, Aranguren, Luis Fernando, Shinn, Andrew P., and Romero, Xavier (2023) Acute mortality of Penaeus vannamei larvae in farm hatcheries associated with the presence of Vibrio sp. carrying the VpPirAB toxin genes. Aquaculture International, 31. pp. 3363-3382.

K

Kumanan, Karthiga, von Ammon, Ulla, Fidler, Andrew, Symonds, Jane E., Walker, Seumas P., Carson, Jeremy, and Hutson, Kate S. (2022) Advantages of selective medium for surveillance of Tenacibaculum species in marine fish aquaculture. Aquaculture, 558. 738365.

Kelly, E., Gibson-Kueh, S., Ebner, B.C., Donaldson, J.A., Yang, R., Buller, N., Hair, S., Morgan, D.L., and Lymbery, A.J. (2016) Observations on the health of Tandanus tropicanus (Teleostei: Plotosidae) from an Australian river system. Australian Zoologist, 38 (1). pp. 83-89.

M

Meemetta, Watcharachai, Domingos, Jose A., Dong, Ha Thanh, and Senapin, Saengchan (2020) Development of a SYBR Green quantitative PCR assay for detection of Lates calcarifer herpesvirus (LCHV) in farmed barramundi. Journal of Virological Methods, 285. 113920.

N

Narvaez, Pauline (2022) Cleaning symbiosis and the disease triangle. PhD thesis, James Cook University.

Nghia, Nguyen Huu, Van, Phan Thi, Giang, Pham Thai, Hanh, Nguyen Thi, St‐Hilaire, Sophie, and Domingos, Jose A. (2021) Control of Vibrio parahaemolyticus (AHPND strain) and improvement of water quality using nanobubble technology. Aquaculture Research, 52 (6). pp. 2727-2739.

Noble, Tansyn N., Coman, Gregory J., Wade, Nicholas M., Thomson, Peter C., Raadsma, Herman W., Khatkar, Mehar S., Guppy, Jarrod L., and Jerry, Dean R. (2020) Genetic parameters for tolerance to gill-associated virus under challenge-test conditions in the black tiger shrimp (Penaeus monodon). Aquaculture, 516. 734428.

Noble, Tansyn H., Coman, Gregory J., Wade, Nicholas M., Thomson, Peter, Raadsma, Herman W., Khatkar, Mehar S., Guppy, Jarrod L., and Jerry, Dean R. (2020) Genetic parameters of Gill-associated virus infection and body weight under commercial conditions in black tiger shrimp, Penaeus monodon. Aquaculture, 528. 735580.

Noble, T.H., Coman, G.J., Cowley, J.A., Wade, N., Sellars, M., and Jerry, D.R. (2017) Comparison of methods for uniformly challenging Black Tiger shrimp (Penaeus monodon) with gill-associated virus. Aquaculture, 473. pp. 191-196.

S

Shen, Xueyan, Niu, Yong Chao, Uichanco, Joseph Angelo V., Phua, Norman, Bhandare, Pranjali, Thevasagayam, Natascha May, Prakki, Sai Rama Sridatta, and Orbán, László (2023) Mapping of a major QTL for increased robustness and detection of genome assembly errors in Asian seabass (Lates calcarifer). BMC Genomics, 24. 449.

Shinn, Andrew P., Avenant-Oldewage, Annemarie, Bondad-Reantaso, Melba G., Cruz-Laufer, Armando J., García-Vásquez, Adriana, Hernández-Orts, Jesús S., Kuchta, Roman, Longshaw, Matt, Metselaar, Matthijs, Pariselle, Antoine, Pérez-Ponce de León, Gerardo, Pradhan, Pravata Kumar, Rubio-Godoy, Miguel, Sood, Neeraj, Vanhove, Maarten P.M., and Deveney, Marty R. (2023) A global review of problematic and pathogenic parasites of farmed tilapia. Reviews in Aquaculture, 15 (Suppl.1). pp. 92-153.

Sunarto, Agus, Grimm, Jessica, McColl, Kenneth A., Ariel, Ellen, Krishnankutty Nair, Kiran, Corbeil, Serge, Hardaker, Talia, Tizard, Mark, Strive, Tanja, and Holmes, Bonnie (2022) Bioprospecting for biological control agents for invasive tilapia in Australia. Biological Control, 174. 105020.

Sakuna, Kitikarn, Elliman, Jennifer, and Owens, Leigh (2017) Assessment of a cricket, Acheta domesticus, bioassay for Chequa Iflavirus and bunya-like virus from redclaw crayfish Cherax quadricarinatus. Journal of Invertebrate Pathology, 150. pp. 41-44.

Sakuna, Kitikarn, Elliman, Jennifer, and Owens, Leigh (2017) Discovery of a novel Picornavirales, Chequa iflavirus, from stressed redclaw crayfish (Cherax quadricarinatus) from farms in northern Queensland, Australia. Virus Research, 238. pp. 148-155.

Sharifpour, M.F., Hobbenaghi, R., Alyali, P., and Morvaridi, A. (2014) Squamous cell carcinoma in a black tetra, Gymnocorymbus ternetzi (Boulenger). Journal of Fish Diseases, 37 (11). pp. 985-987.

T

Tsang, Hin Hung, Domingos, Jose A., Westaway, Jacob A.F., Kam, Maximilian H.Y., Huerlimann, Roger, and Bastos Gomes, Giana (2021) Digital droplet PCR-based environmental DNA tool for monitoring Cryptocaryon irritans in a marine fish farm from Hong Kong. Diversity, 13 (8). 350.

Trasvina-Moreno, A.G., Ascencio, F., Angulo, C., Hutson, K.S., Aviles-Quevedo, A., Inohuye-Rivera, R.B., and Perez-Urbiola, J.C. (2019) Plant extracts as a natural treatment against the fish ectoparasite Neobenedenia sp. (Monogenea: Capsalidae). Journal of Helminthology, 93 (1). pp. 57-65.

Trujillo-González, A., Becker, J.A., Vaughan, D.B., and Hutson, K.S. (2018) Monogenean parasites infect ornamental fish imported to Australia. Parasitology Research, 117 (4). pp. 995-1011.

Taylor-Brown, Alyce, Pillonel, Trestan, Bridle, Andrew, Qi, Weihong, Bachmann, Nathan L., Miller, Terrence L., Greub, Gilbert, Nowak, Barbara, Seth-Smith, Helena M.B., Vaughan, Lloyd, and Polkinghorne, Adam (2017) Culture-independent genomics of a novel chlamydial pathogen of fish provides new insight into host-specific adaptations utilized by these intracellular bacteria. Environmental Microbiology, 19 (5). pp. 1899-1913.

V

von Ammon, Ulla, Averink, Tessa, Kumanan, Karthiga, Brosnahan, Cara L., Pochon, Xavier, Hutson, Kate S., and Symonds, Jane E. (2022) An Efficient Tetraplex Surveillance Tool for Salmonid Pathogens. Frontiers In Microbiology, 13. 885585.

Vaughan, David B., Grutter, Alexandra S., and Hutson, Kate S. (2018) Cleaner shrimp are a sustainable option to treat parasitic disease in farmed fish. Scientific Reports, 8. 13959. pp. 1-10.

Vaughan, David B., Grutter, Alexandra S., Ferguson, Hugh W., Jones, Rhondda, and Hutson, Kate S. (2018) Cleaner shrimp are true cleaners of injured fish. Marine Biology, 165. 118.

Vaughan, David B., Grutter, Alexandra S., and Hutson, Kate S. (2018) Cleaner shrimp remove parasite eggs on fish cages. Aquaculture Environment Interactions, 10. pp. 429-436.

Vaughan, David Brendan, Grutter, Alexandra Sara, Costello, Mark John, and Hutson, Kate (2017) Cleaner fish and shrimp diversity and a critical evaluation of cleaning symbiosis. Fish and Fisheries, 18 (4). pp. 698-716.

W

Wilson, Julian R., Saunders, Richard J., and Hutson, Kate S. (2019) Parasites of the invasive tilapia Oreochromis mossambicus: evidence for co-introduction. Aquatic Invasions, 14 (2). pp. 332-349.

Walsh, Ramona, La Fauce, Kathy, Crockford, Melanie , Jones, Brian, and Owens, Leigh (2017) Genomic heterogeneity and prevalence of hepandensovirus in Penaeus esculentus from Western Australia, and P. merguiensis from the Gulf of Carpentaria, Australia. Aquaculture, 471. pp. 43-48.

Wright, Emily E., Nguyen, Hong Uyen, and Owens, Leigh (2017) Preliminary characterization of a Nisin Z bacteriocin with activity against the fish pathogen Streptococcus iniae. Oceanography & Fisheries, 3 (2). pp. 1-13.